Multiple sequence alignment - TraesCS3A01G353600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G353600 chr3A 100.000 2150 0 0 1 2150 601381654 601379505 0.000000e+00 3971.0
1 TraesCS3A01G353600 chr3A 83.938 386 30 20 869 1246 601386366 601386005 7.350000e-90 340.0
2 TraesCS3A01G353600 chr3A 90.909 253 20 3 983 1232 601374568 601374316 9.510000e-89 337.0
3 TraesCS3A01G353600 chr3A 89.520 229 16 5 523 751 601375084 601374864 1.260000e-72 283.0
4 TraesCS3A01G353600 chr3A 90.728 151 11 1 1354 1501 601374083 601373933 4.680000e-47 198.0
5 TraesCS3A01G353600 chr3A 78.679 333 33 26 809 1137 601368470 601368172 1.010000e-43 187.0
6 TraesCS3A01G353600 chr3A 83.824 136 22 0 992 1127 601342620 601342485 1.730000e-26 130.0
7 TraesCS3A01G353600 chr3A 88.889 108 9 1 1247 1354 601374227 601374123 1.730000e-26 130.0
8 TraesCS3A01G353600 chr3A 80.311 193 20 6 1251 1428 601385938 601385749 1.730000e-26 130.0
9 TraesCS3A01G353600 chr3A 90.141 71 6 1 1887 1957 601373899 601373830 8.170000e-15 91.6
10 TraesCS3A01G353600 chr3A 97.143 35 1 0 1531 1565 601373934 601373900 2.300000e-05 60.2
11 TraesCS3A01G353600 chr3D 85.276 1107 98 31 73 1153 459160928 459159861 0.000000e+00 1081.0
12 TraesCS3A01G353600 chr3D 84.988 433 32 20 814 1238 459195041 459194634 1.990000e-110 409.0
13 TraesCS3A01G353600 chr3D 84.636 371 37 10 260 620 459195587 459195227 3.400000e-93 351.0
14 TraesCS3A01G353600 chr3D 91.713 181 8 1 1891 2064 459159420 459159240 5.930000e-61 244.0
15 TraesCS3A01G353600 chr3D 89.865 148 12 1 1357 1501 459159604 459159457 1.010000e-43 187.0
16 TraesCS3A01G353600 chr3D 85.906 149 9 7 621 769 459195192 459195056 4.780000e-32 148.0
17 TraesCS3A01G353600 chr3D 87.037 108 9 2 1247 1354 459159749 459159647 1.350000e-22 117.0
18 TraesCS3A01G353600 chr3D 97.222 36 1 0 1531 1566 459159458 459159423 6.410000e-06 62.1
19 TraesCS3A01G353600 chr3B 82.582 1154 92 43 106 1232 606421765 606420694 0.000000e+00 917.0
20 TraesCS3A01G353600 chr3B 80.580 1035 84 54 260 1246 606559531 606558566 0.000000e+00 689.0
21 TraesCS3A01G353600 chr3B 90.728 151 11 1 1354 1501 606420461 606420311 4.680000e-47 198.0
22 TraesCS3A01G353600 chr3B 85.185 108 13 2 1247 1354 606420605 606420501 8.110000e-20 108.0
23 TraesCS3A01G353600 chr3B 87.671 73 7 1 865 937 606224114 606224044 1.370000e-12 84.2
24 TraesCS3A01G353600 chr3B 100.000 35 0 0 1531 1565 606420312 606420278 4.950000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G353600 chr3A 601379505 601381654 2149 True 3971.000000 3971 100.000000 1 2150 1 chr3A.!!$R3 2149
1 TraesCS3A01G353600 chr3A 601385749 601386366 617 True 235.000000 340 82.124500 869 1428 2 chr3A.!!$R5 559
2 TraesCS3A01G353600 chr3D 459159240 459160928 1688 True 338.220000 1081 90.222600 73 2064 5 chr3D.!!$R1 1991
3 TraesCS3A01G353600 chr3D 459194634 459195587 953 True 302.666667 409 85.176667 260 1238 3 chr3D.!!$R2 978
4 TraesCS3A01G353600 chr3B 606558566 606559531 965 True 689.000000 689 80.580000 260 1246 1 chr3B.!!$R2 986
5 TraesCS3A01G353600 chr3B 606420278 606421765 1487 True 322.200000 917 89.623750 106 1565 4 chr3B.!!$R3 1459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 725 0.096628 CCTCCTCGACGAGTGTTACG 59.903 60.0 22.61 7.12 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 2015 0.035739 GGGAACTGGGAACAACGCTA 59.964 55.0 0.0 0.0 42.06 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.700831 ATTAATAATCATATAAAGGGGTGGAGC 57.299 33.333 0.00 0.00 0.00 4.70
40 41 6.718593 ATAATCATATAAAGGGGTGGAGCA 57.281 37.500 0.00 0.00 0.00 4.26
41 42 3.857157 TCATATAAAGGGGTGGAGCAC 57.143 47.619 0.00 0.00 0.00 4.40
53 54 4.344865 GAGCACCCCCGAGCCAAA 62.345 66.667 0.00 0.00 0.00 3.28
54 55 3.860930 GAGCACCCCCGAGCCAAAA 62.861 63.158 0.00 0.00 0.00 2.44
55 56 2.915137 GCACCCCCGAGCCAAAAA 60.915 61.111 0.00 0.00 0.00 1.94
85 86 3.584848 ACACATCCCTAATCTATCCCAGC 59.415 47.826 0.00 0.00 0.00 4.85
92 93 4.202503 CCCTAATCTATCCCAGCACATTGT 60.203 45.833 0.00 0.00 0.00 2.71
95 96 3.548745 TCTATCCCAGCACATTGTCAG 57.451 47.619 0.00 0.00 0.00 3.51
100 101 3.877559 TCCCAGCACATTGTCAGAATAG 58.122 45.455 0.00 0.00 0.00 1.73
104 105 4.093998 CCAGCACATTGTCAGAATAGTCAC 59.906 45.833 0.00 0.00 0.00 3.67
134 135 2.654079 CGAGACTCAGCCCAGCCTT 61.654 63.158 2.82 0.00 0.00 4.35
145 146 0.748005 CCCAGCCTTACCCACATTCG 60.748 60.000 0.00 0.00 0.00 3.34
147 148 1.208535 CCAGCCTTACCCACATTCGTA 59.791 52.381 0.00 0.00 0.00 3.43
163 164 9.153721 CCACATTCGTACCTTTTACACTTATTA 57.846 33.333 0.00 0.00 0.00 0.98
168 169 9.926158 TTCGTACCTTTTACACTTATTATGTCA 57.074 29.630 0.00 0.00 0.00 3.58
204 205 5.875359 CAGGTACTCCCTCTGTAAACAAATC 59.125 44.000 0.00 0.00 43.86 2.17
205 206 5.785940 AGGTACTCCCTCTGTAAACAAATCT 59.214 40.000 0.00 0.00 40.71 2.40
208 209 8.098912 GGTACTCCCTCTGTAAACAAATCTAAA 58.901 37.037 0.00 0.00 0.00 1.85
210 211 8.392372 ACTCCCTCTGTAAACAAATCTAAAAC 57.608 34.615 0.00 0.00 0.00 2.43
211 212 8.218488 ACTCCCTCTGTAAACAAATCTAAAACT 58.782 33.333 0.00 0.00 0.00 2.66
212 213 8.617290 TCCCTCTGTAAACAAATCTAAAACTC 57.383 34.615 0.00 0.00 0.00 3.01
213 214 8.215050 TCCCTCTGTAAACAAATCTAAAACTCA 58.785 33.333 0.00 0.00 0.00 3.41
214 215 9.014297 CCCTCTGTAAACAAATCTAAAACTCAT 57.986 33.333 0.00 0.00 0.00 2.90
286 297 0.832983 AGGCCGTACTACCAACCACA 60.833 55.000 0.00 0.00 0.00 4.17
299 310 0.105224 AACCACATGACACGGTCGAA 59.895 50.000 0.00 0.00 34.95 3.71
301 312 0.319555 CCACATGACACGGTCGAAGT 60.320 55.000 0.00 0.00 34.95 3.01
358 370 4.380531 TGTTTTGTTTTGTCACCAGCAAA 58.619 34.783 0.00 0.00 34.47 3.68
377 397 2.990740 AAAACCCTTGGCCAGATACA 57.009 45.000 5.11 0.00 0.00 2.29
379 399 2.736670 AACCCTTGGCCAGATACATC 57.263 50.000 5.11 0.00 0.00 3.06
460 488 3.108376 AGGTTCTTCAGCCCTACCTAAG 58.892 50.000 0.00 0.00 37.45 2.18
482 510 2.912366 GCACAGTTGCGTTACTTAACC 58.088 47.619 0.00 0.00 39.50 2.85
491 519 3.243134 TGCGTTACTTAACCCAAAAGCAC 60.243 43.478 0.00 0.00 32.69 4.40
508 536 2.036733 AGCACGTCCACTTAGCACTAAA 59.963 45.455 0.00 0.00 0.00 1.85
519 547 7.232534 TCCACTTAGCACTAAACAATGGATTTT 59.767 33.333 7.67 0.00 0.00 1.82
567 595 1.450848 CGTGCATCTGGCTCCACAT 60.451 57.895 0.00 0.00 45.15 3.21
587 615 1.592669 CAGCCGGCCGTCTAATCTG 60.593 63.158 26.15 15.82 0.00 2.90
588 616 2.280186 GCCGGCCGTCTAATCTGG 60.280 66.667 26.12 6.10 0.00 3.86
589 617 2.792947 GCCGGCCGTCTAATCTGGA 61.793 63.158 26.12 0.00 0.00 3.86
590 618 2.050269 CCGGCCGTCTAATCTGGAT 58.950 57.895 26.12 0.00 0.00 3.41
591 619 0.393077 CCGGCCGTCTAATCTGGATT 59.607 55.000 26.12 1.40 34.93 3.01
630 692 1.413077 CTCCCTAATCCCTTCACGGAC 59.587 57.143 0.00 0.00 33.77 4.79
663 725 0.096628 CCTCCTCGACGAGTGTTACG 59.903 60.000 22.61 7.12 0.00 3.18
685 755 0.457681 GAGAGCCGAGAGTGACAAGC 60.458 60.000 0.00 0.00 0.00 4.01
705 775 3.046087 CTCTGCACGCACCCACAG 61.046 66.667 0.00 0.00 0.00 3.66
745 815 2.033299 CACACGACTCCAAACAAAGCAT 59.967 45.455 0.00 0.00 0.00 3.79
754 824 7.903431 CGACTCCAAACAAAGCATACTTATTAC 59.097 37.037 0.00 0.00 34.05 1.89
761 831 3.679824 AGCATACTTATTACTCCCGGC 57.320 47.619 0.00 0.00 0.00 6.13
781 851 0.250640 CCCCCAGTAGATGCAGATGC 60.251 60.000 0.00 0.00 42.50 3.91
904 983 0.610174 TGCTCACTCTCCATCCACAC 59.390 55.000 0.00 0.00 0.00 3.82
971 1067 1.682684 GCACGGAGAGGAGGAGGAA 60.683 63.158 0.00 0.00 0.00 3.36
1163 1280 1.451927 GATGATGGCTTGACCGGCA 60.452 57.895 0.00 0.00 43.94 5.69
1178 1295 1.870055 CGGCAAGGACAAGCAAGCAT 61.870 55.000 0.00 0.00 0.00 3.79
1179 1296 0.108945 GGCAAGGACAAGCAAGCATC 60.109 55.000 0.00 0.00 0.00 3.91
1180 1297 0.886563 GCAAGGACAAGCAAGCATCT 59.113 50.000 0.00 0.00 0.00 2.90
1181 1298 1.271656 GCAAGGACAAGCAAGCATCTT 59.728 47.619 0.00 0.00 0.00 2.40
1185 1302 3.080319 AGGACAAGCAAGCATCTTCTTC 58.920 45.455 0.00 0.00 0.00 2.87
1186 1303 2.159599 GGACAAGCAAGCATCTTCTTCG 60.160 50.000 0.00 0.00 0.00 3.79
1187 1304 1.808945 ACAAGCAAGCATCTTCTTCGG 59.191 47.619 0.00 0.00 0.00 4.30
1189 1306 1.028868 AGCAAGCATCTTCTTCGGCC 61.029 55.000 0.00 0.00 0.00 6.13
1191 1308 0.731417 CAAGCATCTTCTTCGGCCAG 59.269 55.000 2.24 0.00 0.00 4.85
1192 1309 0.326264 AAGCATCTTCTTCGGCCAGT 59.674 50.000 2.24 0.00 0.00 4.00
1222 1347 1.455383 GGTGTGGTTCTGGTGCTTGG 61.455 60.000 0.00 0.00 0.00 3.61
1225 1350 1.827789 TGGTTCTGGTGCTTGGTGC 60.828 57.895 0.00 0.00 43.25 5.01
1243 1373 0.101759 GCGTACAGGGATTGCGTAGA 59.898 55.000 0.00 0.00 0.00 2.59
1249 1449 4.755266 ACAGGGATTGCGTAGATTTAGT 57.245 40.909 0.00 0.00 0.00 2.24
1259 1459 3.430374 GCGTAGATTTAGTCCCTGCTTGA 60.430 47.826 0.00 0.00 0.00 3.02
1264 1464 4.400567 AGATTTAGTCCCTGCTTGATTTGC 59.599 41.667 0.00 0.00 0.00 3.68
1273 1473 1.063031 GCTTGATTTGCGGTTTGCTC 58.937 50.000 0.00 0.00 46.63 4.26
1328 1528 3.093717 GTTGTCCACGAGTGAAGAAGA 57.906 47.619 4.59 0.00 0.00 2.87
1347 1547 3.798202 AGAAATGTACGGAGATTGGAGC 58.202 45.455 0.00 0.00 0.00 4.70
1349 1549 3.914426 AATGTACGGAGATTGGAGCTT 57.086 42.857 0.00 0.00 0.00 3.74
1371 1611 6.458478 GCTTCATGTTCTGATTCTGAGATTGG 60.458 42.308 0.00 0.00 32.72 3.16
1403 1646 4.552355 CTCTTGCTGCATTTGATTTGTCA 58.448 39.130 1.84 0.00 0.00 3.58
1436 1679 7.716799 AGTCTCTGAACTGAATGAATAGACT 57.283 36.000 0.00 0.00 37.06 3.24
1440 1683 4.517285 TGAACTGAATGAATAGACTGGCC 58.483 43.478 0.00 0.00 0.00 5.36
1442 1685 4.148128 ACTGAATGAATAGACTGGCCTG 57.852 45.455 8.29 8.29 0.00 4.85
1473 1716 1.809619 CGGACGGTACATGCCACAG 60.810 63.158 0.00 0.00 0.00 3.66
1499 1742 1.092921 TTTGCCTGACGCGTGTTTCT 61.093 50.000 20.70 0.00 42.08 2.52
1500 1743 1.092921 TTGCCTGACGCGTGTTTCTT 61.093 50.000 20.70 0.00 42.08 2.52
1501 1744 1.082756 GCCTGACGCGTGTTTCTTG 60.083 57.895 20.70 0.00 0.00 3.02
1502 1745 1.569493 CCTGACGCGTGTTTCTTGG 59.431 57.895 20.70 5.20 0.00 3.61
1503 1746 1.157870 CCTGACGCGTGTTTCTTGGT 61.158 55.000 20.70 0.00 0.00 3.67
1504 1747 0.232303 CTGACGCGTGTTTCTTGGTC 59.768 55.000 20.70 0.00 0.00 4.02
1505 1748 0.179094 TGACGCGTGTTTCTTGGTCT 60.179 50.000 20.70 0.00 0.00 3.85
1506 1749 0.507358 GACGCGTGTTTCTTGGTCTC 59.493 55.000 20.70 0.00 0.00 3.36
1507 1750 0.179094 ACGCGTGTTTCTTGGTCTCA 60.179 50.000 12.93 0.00 0.00 3.27
1508 1751 0.508641 CGCGTGTTTCTTGGTCTCAG 59.491 55.000 0.00 0.00 0.00 3.35
1509 1752 0.235926 GCGTGTTTCTTGGTCTCAGC 59.764 55.000 0.00 0.00 0.00 4.26
1510 1753 1.871080 CGTGTTTCTTGGTCTCAGCT 58.129 50.000 0.00 0.00 0.00 4.24
1511 1754 1.795286 CGTGTTTCTTGGTCTCAGCTC 59.205 52.381 0.00 0.00 0.00 4.09
1512 1755 2.147150 GTGTTTCTTGGTCTCAGCTCC 58.853 52.381 0.00 0.00 0.00 4.70
1513 1756 1.768275 TGTTTCTTGGTCTCAGCTCCA 59.232 47.619 0.00 0.00 0.00 3.86
1514 1757 2.147150 GTTTCTTGGTCTCAGCTCCAC 58.853 52.381 0.00 0.00 33.12 4.02
1515 1758 0.687354 TTCTTGGTCTCAGCTCCACC 59.313 55.000 0.00 0.00 33.12 4.61
1516 1759 0.471780 TCTTGGTCTCAGCTCCACCA 60.472 55.000 4.15 4.15 38.48 4.17
1517 1760 0.617413 CTTGGTCTCAGCTCCACCAT 59.383 55.000 8.45 0.00 39.97 3.55
1518 1761 0.325933 TTGGTCTCAGCTCCACCATG 59.674 55.000 8.45 0.00 39.97 3.66
1519 1762 1.222936 GGTCTCAGCTCCACCATGG 59.777 63.158 11.19 11.19 39.43 3.66
1520 1763 1.451028 GTCTCAGCTCCACCATGGC 60.451 63.158 13.04 0.00 37.47 4.40
1521 1764 2.513204 CTCAGCTCCACCATGGCG 60.513 66.667 13.04 0.90 37.47 5.69
1526 1769 4.776322 CTCCACCATGGCGCGGAA 62.776 66.667 13.04 0.13 37.47 4.30
1527 1770 4.776322 TCCACCATGGCGCGGAAG 62.776 66.667 13.04 0.00 37.47 3.46
1528 1771 4.776322 CCACCATGGCGCGGAAGA 62.776 66.667 13.04 0.00 0.00 2.87
1529 1772 3.197790 CACCATGGCGCGGAAGAG 61.198 66.667 13.04 0.00 0.00 2.85
1566 1809 2.046604 GTCCGGCAGTGGTTACCC 60.047 66.667 0.00 0.00 0.00 3.69
1567 1810 2.203877 TCCGGCAGTGGTTACCCT 60.204 61.111 0.00 0.00 0.00 4.34
1568 1811 1.844289 TCCGGCAGTGGTTACCCTT 60.844 57.895 0.00 0.00 0.00 3.95
1569 1812 1.376812 CCGGCAGTGGTTACCCTTC 60.377 63.158 0.00 0.00 0.00 3.46
1570 1813 1.740296 CGGCAGTGGTTACCCTTCG 60.740 63.158 0.00 0.00 0.00 3.79
1571 1814 2.038837 GGCAGTGGTTACCCTTCGC 61.039 63.158 0.00 0.00 0.00 4.70
1572 1815 2.038837 GCAGTGGTTACCCTTCGCC 61.039 63.158 0.00 0.00 0.00 5.54
1573 1816 1.740296 CAGTGGTTACCCTTCGCCG 60.740 63.158 0.00 0.00 0.00 6.46
1574 1817 3.122971 GTGGTTACCCTTCGCCGC 61.123 66.667 0.00 0.00 0.00 6.53
1575 1818 4.397832 TGGTTACCCTTCGCCGCC 62.398 66.667 0.00 0.00 0.00 6.13
1577 1820 4.440127 GTTACCCTTCGCCGCCGA 62.440 66.667 0.00 0.00 42.66 5.54
1578 1821 3.463585 TTACCCTTCGCCGCCGAT 61.464 61.111 0.00 0.00 43.97 4.18
1579 1822 3.726595 TTACCCTTCGCCGCCGATG 62.727 63.158 0.00 0.00 43.97 3.84
1591 1834 3.945434 CCGATGCAGCGCCATGAC 61.945 66.667 20.85 0.00 0.00 3.06
1592 1835 3.197092 CGATGCAGCGCCATGACA 61.197 61.111 13.01 0.00 0.00 3.58
1593 1836 2.406401 GATGCAGCGCCATGACAC 59.594 61.111 2.29 0.00 0.00 3.67
1594 1837 3.444717 GATGCAGCGCCATGACACG 62.445 63.158 2.29 0.00 0.00 4.49
1595 1838 3.956305 ATGCAGCGCCATGACACGA 62.956 57.895 2.29 0.00 0.00 4.35
1596 1839 3.857854 GCAGCGCCATGACACGAG 61.858 66.667 2.29 0.00 0.00 4.18
1597 1840 2.433145 CAGCGCCATGACACGAGT 60.433 61.111 2.29 0.00 0.00 4.18
1598 1841 2.125912 AGCGCCATGACACGAGTC 60.126 61.111 2.29 6.00 45.19 3.36
1615 1858 2.661866 CGATCGATCGGGGTTGCC 60.662 66.667 34.54 2.44 45.93 4.52
1616 1859 2.504032 GATCGATCGGGGTTGCCA 59.496 61.111 16.41 0.00 0.00 4.92
1617 1860 1.153249 GATCGATCGGGGTTGCCAA 60.153 57.895 16.41 0.00 0.00 4.52
1618 1861 0.535102 GATCGATCGGGGTTGCCAAT 60.535 55.000 16.41 0.00 0.00 3.16
1619 1862 0.106719 ATCGATCGGGGTTGCCAATT 60.107 50.000 16.41 0.00 0.00 2.32
1620 1863 0.322997 TCGATCGGGGTTGCCAATTT 60.323 50.000 16.41 0.00 0.00 1.82
1621 1864 0.179140 CGATCGGGGTTGCCAATTTG 60.179 55.000 7.38 0.00 0.00 2.32
1622 1865 0.460109 GATCGGGGTTGCCAATTTGC 60.460 55.000 0.00 0.00 0.00 3.68
1623 1866 1.898330 ATCGGGGTTGCCAATTTGCC 61.898 55.000 0.00 0.00 0.00 4.52
1624 1867 2.876945 CGGGGTTGCCAATTTGCCA 61.877 57.895 0.00 0.00 0.00 4.92
1625 1868 1.453669 GGGGTTGCCAATTTGCCAA 59.546 52.632 0.00 0.00 0.00 4.52
1626 1869 0.038021 GGGGTTGCCAATTTGCCAAT 59.962 50.000 0.00 0.00 0.00 3.16
1627 1870 1.547449 GGGGTTGCCAATTTGCCAATT 60.547 47.619 0.00 0.00 32.36 2.32
1628 1871 1.540707 GGGTTGCCAATTTGCCAATTG 59.459 47.619 14.71 14.71 46.29 2.32
1642 1885 9.950680 AATTTGCCAATTGATACGATTAAGTAG 57.049 29.630 7.12 0.00 30.89 2.57
1643 1886 6.539649 TGCCAATTGATACGATTAAGTAGC 57.460 37.500 7.12 0.00 33.96 3.58
1644 1887 6.052360 TGCCAATTGATACGATTAAGTAGCA 58.948 36.000 7.12 0.00 40.66 3.49
1650 1893 7.562640 TTGATACGATTAAGTAGCAATAGCG 57.437 36.000 4.06 0.00 44.71 4.26
1651 1894 6.089016 TTGATACGATTAAGTAGCAATAGCGC 59.911 38.462 0.00 0.00 44.71 5.92
1652 1895 8.972734 TTGATACGATTAAGTAGCAATAGCGCG 61.973 40.741 0.00 0.00 44.71 6.86
1659 1902 4.360101 GCAATAGCGCGTTTCCAC 57.640 55.556 8.43 0.00 0.00 4.02
1660 1903 1.499949 GCAATAGCGCGTTTCCACA 59.500 52.632 8.43 0.00 0.00 4.17
1661 1904 0.109964 GCAATAGCGCGTTTCCACAA 60.110 50.000 8.43 0.00 0.00 3.33
1662 1905 1.664588 GCAATAGCGCGTTTCCACAAA 60.665 47.619 8.43 0.00 0.00 2.83
1663 1906 2.862512 CAATAGCGCGTTTCCACAAAT 58.137 42.857 8.43 0.00 0.00 2.32
1664 1907 3.729462 GCAATAGCGCGTTTCCACAAATA 60.729 43.478 8.43 0.00 0.00 1.40
1665 1908 4.407818 CAATAGCGCGTTTCCACAAATAA 58.592 39.130 8.43 0.00 0.00 1.40
1666 1909 4.688511 ATAGCGCGTTTCCACAAATAAA 57.311 36.364 8.43 0.00 0.00 1.40
1667 1910 2.657184 AGCGCGTTTCCACAAATAAAC 58.343 42.857 8.43 0.00 33.26 2.01
1668 1911 2.292292 AGCGCGTTTCCACAAATAAACT 59.708 40.909 8.43 0.00 34.21 2.66
1669 1912 2.655001 GCGCGTTTCCACAAATAAACTC 59.345 45.455 8.43 0.00 34.21 3.01
1670 1913 3.231160 CGCGTTTCCACAAATAAACTCC 58.769 45.455 0.00 0.00 34.21 3.85
1671 1914 3.304123 CGCGTTTCCACAAATAAACTCCA 60.304 43.478 0.00 0.00 34.21 3.86
1672 1915 3.978855 GCGTTTCCACAAATAAACTCCAC 59.021 43.478 0.00 0.00 34.21 4.02
1673 1916 4.498345 GCGTTTCCACAAATAAACTCCACA 60.498 41.667 0.00 0.00 34.21 4.17
1674 1917 5.212194 CGTTTCCACAAATAAACTCCACAG 58.788 41.667 0.00 0.00 34.21 3.66
1675 1918 5.008217 CGTTTCCACAAATAAACTCCACAGA 59.992 40.000 0.00 0.00 34.21 3.41
1676 1919 6.293955 CGTTTCCACAAATAAACTCCACAGAT 60.294 38.462 0.00 0.00 34.21 2.90
1677 1920 7.094975 CGTTTCCACAAATAAACTCCACAGATA 60.095 37.037 0.00 0.00 34.21 1.98
1678 1921 8.573035 GTTTCCACAAATAAACTCCACAGATAA 58.427 33.333 0.00 0.00 33.71 1.75
1679 1922 7.681939 TCCACAAATAAACTCCACAGATAAC 57.318 36.000 0.00 0.00 0.00 1.89
1680 1923 7.227873 TCCACAAATAAACTCCACAGATAACA 58.772 34.615 0.00 0.00 0.00 2.41
1681 1924 7.174253 TCCACAAATAAACTCCACAGATAACAC 59.826 37.037 0.00 0.00 0.00 3.32
1682 1925 7.040755 CCACAAATAAACTCCACAGATAACACA 60.041 37.037 0.00 0.00 0.00 3.72
1683 1926 8.349245 CACAAATAAACTCCACAGATAACACAA 58.651 33.333 0.00 0.00 0.00 3.33
1684 1927 8.908903 ACAAATAAACTCCACAGATAACACAAA 58.091 29.630 0.00 0.00 0.00 2.83
1685 1928 9.180678 CAAATAAACTCCACAGATAACACAAAC 57.819 33.333 0.00 0.00 0.00 2.93
1686 1929 8.458573 AATAAACTCCACAGATAACACAAACA 57.541 30.769 0.00 0.00 0.00 2.83
1687 1930 6.377327 AAACTCCACAGATAACACAAACAG 57.623 37.500 0.00 0.00 0.00 3.16
1688 1931 5.036117 ACTCCACAGATAACACAAACAGT 57.964 39.130 0.00 0.00 0.00 3.55
1689 1932 6.169557 ACTCCACAGATAACACAAACAGTA 57.830 37.500 0.00 0.00 0.00 2.74
1690 1933 6.588204 ACTCCACAGATAACACAAACAGTAA 58.412 36.000 0.00 0.00 0.00 2.24
1691 1934 6.706270 ACTCCACAGATAACACAAACAGTAAG 59.294 38.462 0.00 0.00 0.00 2.34
1692 1935 6.588204 TCCACAGATAACACAAACAGTAAGT 58.412 36.000 0.00 0.00 0.00 2.24
1693 1936 7.728148 TCCACAGATAACACAAACAGTAAGTA 58.272 34.615 0.00 0.00 0.00 2.24
1694 1937 7.654520 TCCACAGATAACACAAACAGTAAGTAC 59.345 37.037 0.00 0.00 0.00 2.73
1695 1938 7.358931 CCACAGATAACACAAACAGTAAGTACG 60.359 40.741 0.00 0.00 0.00 3.67
1696 1939 6.145048 ACAGATAACACAAACAGTAAGTACGC 59.855 38.462 0.00 0.00 0.00 4.42
1697 1940 6.365247 CAGATAACACAAACAGTAAGTACGCT 59.635 38.462 0.00 0.00 0.00 5.07
1698 1941 6.927381 AGATAACACAAACAGTAAGTACGCTT 59.073 34.615 0.00 0.00 38.66 4.68
1699 1942 4.789095 ACACAAACAGTAAGTACGCTTG 57.211 40.909 0.00 0.00 36.22 4.01
1700 1943 3.001939 ACACAAACAGTAAGTACGCTTGC 59.998 43.478 0.00 0.00 37.55 4.01
1701 1944 3.001838 CACAAACAGTAAGTACGCTTGCA 59.998 43.478 0.00 0.00 39.36 4.08
1702 1945 3.001939 ACAAACAGTAAGTACGCTTGCAC 59.998 43.478 0.00 0.00 39.36 4.57
1703 1946 1.415374 ACAGTAAGTACGCTTGCACG 58.585 50.000 0.00 0.00 39.36 5.34
1704 1947 0.093026 CAGTAAGTACGCTTGCACGC 59.907 55.000 4.85 4.85 39.36 5.34
1705 1948 0.038526 AGTAAGTACGCTTGCACGCT 60.039 50.000 13.78 3.22 39.36 5.07
1706 1949 0.365859 GTAAGTACGCTTGCACGCTC 59.634 55.000 13.78 3.96 37.30 5.03
1707 1950 1.068832 TAAGTACGCTTGCACGCTCG 61.069 55.000 13.78 0.95 36.22 5.03
1708 1951 2.742710 AAGTACGCTTGCACGCTCGA 62.743 55.000 13.78 0.00 36.19 4.04
1709 1952 2.158959 GTACGCTTGCACGCTCGAT 61.159 57.895 13.78 0.00 36.19 3.59
1710 1953 1.872234 TACGCTTGCACGCTCGATC 60.872 57.895 13.78 0.00 36.19 3.69
1711 1954 2.266376 TACGCTTGCACGCTCGATCT 62.266 55.000 13.78 0.00 36.19 2.75
1712 1955 2.854214 CGCTTGCACGCTCGATCTC 61.854 63.158 13.78 0.00 0.00 2.75
1713 1956 1.518133 GCTTGCACGCTCGATCTCT 60.518 57.895 8.12 0.00 0.00 3.10
1714 1957 1.080995 GCTTGCACGCTCGATCTCTT 61.081 55.000 8.12 0.00 0.00 2.85
1715 1958 0.644331 CTTGCACGCTCGATCTCTTG 59.356 55.000 0.00 0.00 0.00 3.02
1716 1959 0.038251 TTGCACGCTCGATCTCTTGT 60.038 50.000 0.00 0.00 0.00 3.16
1717 1960 0.038251 TGCACGCTCGATCTCTTGTT 60.038 50.000 0.00 0.00 0.00 2.83
1718 1961 0.642800 GCACGCTCGATCTCTTGTTC 59.357 55.000 0.00 0.00 0.00 3.18
1719 1962 1.734047 GCACGCTCGATCTCTTGTTCT 60.734 52.381 0.00 0.00 0.00 3.01
1720 1963 2.600731 CACGCTCGATCTCTTGTTCTT 58.399 47.619 0.00 0.00 0.00 2.52
1721 1964 2.596419 CACGCTCGATCTCTTGTTCTTC 59.404 50.000 0.00 0.00 0.00 2.87
1722 1965 2.490115 ACGCTCGATCTCTTGTTCTTCT 59.510 45.455 0.00 0.00 0.00 2.85
1723 1966 3.105203 CGCTCGATCTCTTGTTCTTCTC 58.895 50.000 0.00 0.00 0.00 2.87
1724 1967 3.426829 CGCTCGATCTCTTGTTCTTCTCA 60.427 47.826 0.00 0.00 0.00 3.27
1725 1968 4.489810 GCTCGATCTCTTGTTCTTCTCAA 58.510 43.478 0.00 0.00 0.00 3.02
1726 1969 4.926238 GCTCGATCTCTTGTTCTTCTCAAA 59.074 41.667 0.00 0.00 0.00 2.69
1727 1970 5.062058 GCTCGATCTCTTGTTCTTCTCAAAG 59.938 44.000 0.00 0.00 0.00 2.77
1728 1971 6.332735 TCGATCTCTTGTTCTTCTCAAAGA 57.667 37.500 0.00 0.00 39.78 2.52
1729 1972 6.749139 TCGATCTCTTGTTCTTCTCAAAGAA 58.251 36.000 0.00 0.00 46.72 2.52
1739 1982 6.610741 TTCTTCTCAAAGAAAAGAGCACTC 57.389 37.500 0.00 0.00 46.09 3.51
1740 1983 5.059833 TCTTCTCAAAGAAAAGAGCACTCC 58.940 41.667 0.00 0.00 38.58 3.85
1741 1984 4.422073 TCTCAAAGAAAAGAGCACTCCA 57.578 40.909 0.00 0.00 0.00 3.86
1742 1985 4.978099 TCTCAAAGAAAAGAGCACTCCAT 58.022 39.130 0.00 0.00 0.00 3.41
1743 1986 4.999950 TCTCAAAGAAAAGAGCACTCCATC 59.000 41.667 0.00 0.00 0.00 3.51
1744 1987 4.074970 TCAAAGAAAAGAGCACTCCATCC 58.925 43.478 0.00 0.00 0.00 3.51
1745 1988 2.797177 AGAAAAGAGCACTCCATCCC 57.203 50.000 0.00 0.00 0.00 3.85
1746 1989 1.988107 AGAAAAGAGCACTCCATCCCA 59.012 47.619 0.00 0.00 0.00 4.37
1747 1990 2.579860 AGAAAAGAGCACTCCATCCCAT 59.420 45.455 0.00 0.00 0.00 4.00
1748 1991 2.431954 AAAGAGCACTCCATCCCATG 57.568 50.000 0.00 0.00 0.00 3.66
1749 1992 1.293062 AAGAGCACTCCATCCCATGT 58.707 50.000 0.00 0.00 0.00 3.21
1750 1993 1.293062 AGAGCACTCCATCCCATGTT 58.707 50.000 0.00 0.00 0.00 2.71
1751 1994 2.481441 AGAGCACTCCATCCCATGTTA 58.519 47.619 0.00 0.00 0.00 2.41
1752 1995 2.171448 AGAGCACTCCATCCCATGTTAC 59.829 50.000 0.00 0.00 0.00 2.50
1753 1996 1.212935 AGCACTCCATCCCATGTTACC 59.787 52.381 0.00 0.00 0.00 2.85
1754 1997 1.064758 GCACTCCATCCCATGTTACCA 60.065 52.381 0.00 0.00 0.00 3.25
1755 1998 2.620367 GCACTCCATCCCATGTTACCAA 60.620 50.000 0.00 0.00 0.00 3.67
1756 1999 3.902218 CACTCCATCCCATGTTACCAAT 58.098 45.455 0.00 0.00 0.00 3.16
1757 2000 4.688597 GCACTCCATCCCATGTTACCAATA 60.689 45.833 0.00 0.00 0.00 1.90
1758 2001 5.634118 CACTCCATCCCATGTTACCAATAT 58.366 41.667 0.00 0.00 0.00 1.28
1759 2002 6.070656 CACTCCATCCCATGTTACCAATATT 58.929 40.000 0.00 0.00 0.00 1.28
1760 2003 6.550854 CACTCCATCCCATGTTACCAATATTT 59.449 38.462 0.00 0.00 0.00 1.40
1761 2004 7.069826 CACTCCATCCCATGTTACCAATATTTT 59.930 37.037 0.00 0.00 0.00 1.82
1762 2005 7.069826 ACTCCATCCCATGTTACCAATATTTTG 59.930 37.037 0.00 0.00 0.00 2.44
1763 2006 7.128751 TCCATCCCATGTTACCAATATTTTGA 58.871 34.615 0.00 0.00 34.60 2.69
1764 2007 7.287466 TCCATCCCATGTTACCAATATTTTGAG 59.713 37.037 0.00 0.00 34.60 3.02
1765 2008 6.463995 TCCCATGTTACCAATATTTTGAGC 57.536 37.500 0.00 0.00 34.60 4.26
1766 2009 6.194235 TCCCATGTTACCAATATTTTGAGCT 58.806 36.000 0.00 0.00 34.60 4.09
1767 2010 6.321181 TCCCATGTTACCAATATTTTGAGCTC 59.679 38.462 6.82 6.82 34.60 4.09
1768 2011 6.322201 CCCATGTTACCAATATTTTGAGCTCT 59.678 38.462 16.19 0.00 34.60 4.09
1769 2012 7.420800 CCATGTTACCAATATTTTGAGCTCTC 58.579 38.462 16.19 0.00 34.60 3.20
1770 2013 7.284034 CCATGTTACCAATATTTTGAGCTCTCT 59.716 37.037 16.19 0.00 34.60 3.10
1771 2014 7.849804 TGTTACCAATATTTTGAGCTCTCTC 57.150 36.000 16.19 0.00 39.78 3.20
1772 2015 7.624549 TGTTACCAATATTTTGAGCTCTCTCT 58.375 34.615 16.19 0.01 40.03 3.10
1773 2016 8.758829 TGTTACCAATATTTTGAGCTCTCTCTA 58.241 33.333 16.19 2.39 40.03 2.43
1774 2017 9.255304 GTTACCAATATTTTGAGCTCTCTCTAG 57.745 37.037 16.19 0.00 40.03 2.43
1775 2018 6.287525 ACCAATATTTTGAGCTCTCTCTAGC 58.712 40.000 16.19 0.00 43.11 3.42
1783 2026 1.915952 GCTCTCTCTAGCGTTGTTCC 58.084 55.000 0.00 0.00 31.76 3.62
1784 2027 1.470112 GCTCTCTCTAGCGTTGTTCCC 60.470 57.143 0.00 0.00 31.76 3.97
1785 2028 1.819288 CTCTCTCTAGCGTTGTTCCCA 59.181 52.381 0.00 0.00 0.00 4.37
1786 2029 1.819288 TCTCTCTAGCGTTGTTCCCAG 59.181 52.381 0.00 0.00 0.00 4.45
1787 2030 1.546476 CTCTCTAGCGTTGTTCCCAGT 59.454 52.381 0.00 0.00 0.00 4.00
1788 2031 1.968493 TCTCTAGCGTTGTTCCCAGTT 59.032 47.619 0.00 0.00 0.00 3.16
1789 2032 2.029290 TCTCTAGCGTTGTTCCCAGTTC 60.029 50.000 0.00 0.00 0.00 3.01
1790 2033 1.001633 TCTAGCGTTGTTCCCAGTTCC 59.998 52.381 0.00 0.00 0.00 3.62
1791 2034 0.035739 TAGCGTTGTTCCCAGTTCCC 59.964 55.000 0.00 0.00 0.00 3.97
1792 2035 1.527380 GCGTTGTTCCCAGTTCCCA 60.527 57.895 0.00 0.00 0.00 4.37
1793 2036 1.792118 GCGTTGTTCCCAGTTCCCAC 61.792 60.000 0.00 0.00 0.00 4.61
1794 2037 1.170290 CGTTGTTCCCAGTTCCCACC 61.170 60.000 0.00 0.00 0.00 4.61
1795 2038 0.106419 GTTGTTCCCAGTTCCCACCA 60.106 55.000 0.00 0.00 0.00 4.17
1796 2039 0.106419 TTGTTCCCAGTTCCCACCAC 60.106 55.000 0.00 0.00 0.00 4.16
1797 2040 0.991355 TGTTCCCAGTTCCCACCACT 60.991 55.000 0.00 0.00 0.00 4.00
1798 2041 0.185175 GTTCCCAGTTCCCACCACTT 59.815 55.000 0.00 0.00 0.00 3.16
1799 2042 0.184933 TTCCCAGTTCCCACCACTTG 59.815 55.000 0.00 0.00 0.00 3.16
1800 2043 0.991355 TCCCAGTTCCCACCACTTGT 60.991 55.000 0.00 0.00 0.00 3.16
1801 2044 0.823356 CCCAGTTCCCACCACTTGTG 60.823 60.000 0.00 0.00 45.01 3.33
1802 2045 0.106719 CCAGTTCCCACCACTTGTGT 60.107 55.000 0.00 0.00 43.85 3.72
1803 2046 1.684869 CCAGTTCCCACCACTTGTGTT 60.685 52.381 0.00 0.00 43.85 3.32
1804 2047 2.099405 CAGTTCCCACCACTTGTGTTT 58.901 47.619 0.00 0.00 43.85 2.83
1805 2048 2.495669 CAGTTCCCACCACTTGTGTTTT 59.504 45.455 0.00 0.00 43.85 2.43
1806 2049 2.495669 AGTTCCCACCACTTGTGTTTTG 59.504 45.455 0.00 0.00 43.85 2.44
1807 2050 0.820871 TCCCACCACTTGTGTTTTGC 59.179 50.000 0.00 0.00 43.85 3.68
1808 2051 0.527385 CCCACCACTTGTGTTTTGCG 60.527 55.000 0.00 0.00 43.85 4.85
1809 2052 1.145162 CCACCACTTGTGTTTTGCGC 61.145 55.000 0.00 0.00 43.85 6.09
1810 2053 0.457509 CACCACTTGTGTTTTGCGCA 60.458 50.000 5.66 5.66 40.26 6.09
1811 2054 0.244994 ACCACTTGTGTTTTGCGCAA 59.755 45.000 21.02 21.02 44.38 4.85
1812 2055 0.644843 CCACTTGTGTTTTGCGCAAC 59.355 50.000 24.99 14.42 42.05 4.17
1813 2056 1.627879 CACTTGTGTTTTGCGCAACT 58.372 45.000 24.99 0.00 42.05 3.16
1814 2057 2.478709 CCACTTGTGTTTTGCGCAACTA 60.479 45.455 24.99 11.46 42.05 2.24
1815 2058 2.529894 CACTTGTGTTTTGCGCAACTAC 59.470 45.455 24.99 22.88 42.05 2.73
1816 2059 2.422127 ACTTGTGTTTTGCGCAACTACT 59.578 40.909 24.99 4.99 42.05 2.57
1817 2060 3.623960 ACTTGTGTTTTGCGCAACTACTA 59.376 39.130 24.99 16.55 42.05 1.82
1818 2061 3.870723 TGTGTTTTGCGCAACTACTAG 57.129 42.857 24.99 0.00 34.22 2.57
1819 2062 2.032377 TGTGTTTTGCGCAACTACTAGC 60.032 45.455 24.99 10.59 34.22 3.42
1828 2071 3.447918 GCAACTACTAGCGGTATTGGA 57.552 47.619 2.45 0.00 0.00 3.53
1829 2072 3.381949 GCAACTACTAGCGGTATTGGAG 58.618 50.000 2.45 0.00 0.00 3.86
1830 2073 3.181478 GCAACTACTAGCGGTATTGGAGT 60.181 47.826 2.45 0.00 0.00 3.85
1831 2074 4.037208 GCAACTACTAGCGGTATTGGAGTA 59.963 45.833 2.45 0.00 0.00 2.59
1832 2075 5.278858 GCAACTACTAGCGGTATTGGAGTAT 60.279 44.000 2.45 0.00 0.00 2.12
1833 2076 6.737899 GCAACTACTAGCGGTATTGGAGTATT 60.738 42.308 2.45 0.00 0.00 1.89
1834 2077 7.522725 GCAACTACTAGCGGTATTGGAGTATTA 60.523 40.741 2.45 0.00 0.00 0.98
1835 2078 8.521176 CAACTACTAGCGGTATTGGAGTATTAT 58.479 37.037 2.45 0.00 0.00 1.28
1836 2079 8.647256 ACTACTAGCGGTATTGGAGTATTATT 57.353 34.615 2.45 0.00 0.00 1.40
1837 2080 9.086758 ACTACTAGCGGTATTGGAGTATTATTT 57.913 33.333 2.45 0.00 0.00 1.40
1838 2081 9.924650 CTACTAGCGGTATTGGAGTATTATTTT 57.075 33.333 0.00 0.00 0.00 1.82
1839 2082 8.828688 ACTAGCGGTATTGGAGTATTATTTTC 57.171 34.615 0.00 0.00 0.00 2.29
1840 2083 8.648693 ACTAGCGGTATTGGAGTATTATTTTCT 58.351 33.333 0.00 0.00 0.00 2.52
1841 2084 9.490379 CTAGCGGTATTGGAGTATTATTTTCTT 57.510 33.333 0.00 0.00 0.00 2.52
1842 2085 8.747538 AGCGGTATTGGAGTATTATTTTCTTT 57.252 30.769 0.00 0.00 0.00 2.52
1843 2086 9.841295 AGCGGTATTGGAGTATTATTTTCTTTA 57.159 29.630 0.00 0.00 0.00 1.85
1872 2115 6.651755 TTTATTAGTTGTACCTAACAGCGC 57.348 37.500 0.00 0.00 43.55 5.92
1873 2116 3.663995 TTAGTTGTACCTAACAGCGCA 57.336 42.857 11.47 0.00 43.55 6.09
1874 2117 2.536761 AGTTGTACCTAACAGCGCAA 57.463 45.000 11.47 0.00 43.55 4.85
1875 2118 3.053831 AGTTGTACCTAACAGCGCAAT 57.946 42.857 11.47 0.00 43.55 3.56
1876 2119 3.408634 AGTTGTACCTAACAGCGCAATT 58.591 40.909 11.47 5.68 43.55 2.32
1877 2120 3.818773 AGTTGTACCTAACAGCGCAATTT 59.181 39.130 11.47 1.17 43.55 1.82
1878 2121 3.822594 TGTACCTAACAGCGCAATTTG 57.177 42.857 11.47 0.29 33.01 2.32
1879 2122 2.095466 TGTACCTAACAGCGCAATTTGC 60.095 45.455 11.47 11.42 35.15 3.68
1880 2123 0.958091 ACCTAACAGCGCAATTTGCA 59.042 45.000 20.56 0.00 45.36 4.08
1881 2124 1.545582 ACCTAACAGCGCAATTTGCAT 59.454 42.857 20.56 6.25 45.36 3.96
1882 2125 2.029110 ACCTAACAGCGCAATTTGCATT 60.029 40.909 20.56 11.13 45.36 3.56
1883 2126 3.192422 ACCTAACAGCGCAATTTGCATTA 59.808 39.130 20.56 11.59 45.36 1.90
1884 2127 3.792956 CCTAACAGCGCAATTTGCATTAG 59.207 43.478 20.56 18.29 45.36 1.73
1885 2128 3.302365 AACAGCGCAATTTGCATTAGT 57.698 38.095 20.56 10.30 45.36 2.24
1886 2129 3.302365 ACAGCGCAATTTGCATTAGTT 57.698 38.095 20.56 0.27 45.36 2.24
1887 2130 2.988493 ACAGCGCAATTTGCATTAGTTG 59.012 40.909 20.56 13.83 45.36 3.16
1888 2131 3.244156 CAGCGCAATTTGCATTAGTTGA 58.756 40.909 20.56 0.00 45.36 3.18
1889 2132 3.302434 CAGCGCAATTTGCATTAGTTGAG 59.698 43.478 20.56 2.90 45.36 3.02
1922 2165 4.139038 GGCCCCTTAGCGATAACAAATTA 58.861 43.478 0.00 0.00 0.00 1.40
1934 2177 8.784043 AGCGATAACAAATTAACAATAGATCCC 58.216 33.333 0.00 0.00 0.00 3.85
1950 2193 9.040259 CAATAGATCCCTACATTATCCTGAGAA 57.960 37.037 0.00 0.00 0.00 2.87
1955 2198 6.322931 TCCCTACATTATCCTGAGAATGCTA 58.677 40.000 12.97 5.85 42.11 3.49
1990 2233 2.871637 GCCGGCATGTCTATCTTGCATA 60.872 50.000 24.80 0.00 45.28 3.14
1994 2237 4.142966 CGGCATGTCTATCTTGCATACATG 60.143 45.833 8.91 8.91 46.44 3.21
1995 2238 4.758674 GGCATGTCTATCTTGCATACATGT 59.241 41.667 2.69 2.69 45.79 3.21
2064 2314 2.751166 ATTCTCTGGTGTTGAGACGG 57.249 50.000 0.00 0.00 39.90 4.79
2065 2315 0.033504 TTCTCTGGTGTTGAGACGGC 59.966 55.000 0.00 0.00 39.90 5.68
2066 2316 1.734477 CTCTGGTGTTGAGACGGCG 60.734 63.158 4.80 4.80 33.68 6.46
2067 2317 3.414700 CTGGTGTTGAGACGGCGC 61.415 66.667 6.90 0.00 0.00 6.53
2068 2318 3.865929 CTGGTGTTGAGACGGCGCT 62.866 63.158 6.90 4.93 0.00 5.92
2069 2319 3.112709 GGTGTTGAGACGGCGCTC 61.113 66.667 19.62 19.62 35.46 5.03
2070 2320 2.049063 GTGTTGAGACGGCGCTCT 60.049 61.111 24.21 18.31 35.91 4.09
2071 2321 2.049156 TGTTGAGACGGCGCTCTG 60.049 61.111 24.21 0.00 35.91 3.35
2072 2322 2.258591 GTTGAGACGGCGCTCTGA 59.741 61.111 24.21 12.06 35.91 3.27
2073 2323 1.372997 GTTGAGACGGCGCTCTGAA 60.373 57.895 24.21 16.22 35.91 3.02
2074 2324 1.080501 TTGAGACGGCGCTCTGAAG 60.081 57.895 24.21 0.00 35.91 3.02
2075 2325 2.202676 GAGACGGCGCTCTGAAGG 60.203 66.667 19.31 0.00 32.16 3.46
2076 2326 2.992114 AGACGGCGCTCTGAAGGT 60.992 61.111 6.90 0.00 0.00 3.50
2077 2327 2.811317 GACGGCGCTCTGAAGGTG 60.811 66.667 6.90 0.00 0.00 4.00
2078 2328 3.282745 GACGGCGCTCTGAAGGTGA 62.283 63.158 6.90 0.00 0.00 4.02
2079 2329 2.507992 CGGCGCTCTGAAGGTGAG 60.508 66.667 7.64 0.00 34.87 3.51
2092 2342 3.990318 AAGGTGAGCAGCTTGTAAAAC 57.010 42.857 13.50 0.00 46.17 2.43
2093 2343 3.214696 AGGTGAGCAGCTTGTAAAACT 57.785 42.857 0.00 0.00 35.28 2.66
2094 2344 2.880890 AGGTGAGCAGCTTGTAAAACTG 59.119 45.455 0.00 0.00 35.28 3.16
2095 2345 2.878406 GGTGAGCAGCTTGTAAAACTGA 59.122 45.455 0.00 0.00 33.10 3.41
2096 2346 3.304057 GGTGAGCAGCTTGTAAAACTGAC 60.304 47.826 0.00 0.00 33.10 3.51
2097 2347 2.878406 TGAGCAGCTTGTAAAACTGACC 59.122 45.455 0.00 0.00 33.10 4.02
2098 2348 3.142174 GAGCAGCTTGTAAAACTGACCT 58.858 45.455 0.00 0.00 33.10 3.85
2099 2349 2.880890 AGCAGCTTGTAAAACTGACCTG 59.119 45.455 0.00 0.00 33.10 4.00
2100 2350 2.618709 GCAGCTTGTAAAACTGACCTGT 59.381 45.455 0.00 0.00 33.10 4.00
2101 2351 3.548818 GCAGCTTGTAAAACTGACCTGTG 60.549 47.826 0.00 0.00 33.10 3.66
2102 2352 3.003689 CAGCTTGTAAAACTGACCTGTGG 59.996 47.826 0.00 0.00 33.10 4.17
2103 2353 2.293399 GCTTGTAAAACTGACCTGTGGG 59.707 50.000 0.00 0.00 38.88 4.61
2112 2362 5.216275 AACTGACCTGTGGGTGTCTGTTT 62.216 47.826 8.49 0.00 45.45 2.83
2113 2363 5.911349 AACTGACCTGTGGGTGTCTGTTTA 61.911 45.833 8.49 0.00 45.45 2.01
2114 2364 2.632987 ACCTGTGGGTGTCTGTTTAC 57.367 50.000 0.00 0.00 45.43 2.01
2115 2365 1.142262 ACCTGTGGGTGTCTGTTTACC 59.858 52.381 0.00 0.00 45.43 2.85
2116 2366 1.142060 CCTGTGGGTGTCTGTTTACCA 59.858 52.381 0.00 0.00 38.74 3.25
2117 2367 2.224769 CCTGTGGGTGTCTGTTTACCAT 60.225 50.000 0.00 0.00 38.74 3.55
2118 2368 3.008594 CCTGTGGGTGTCTGTTTACCATA 59.991 47.826 0.00 0.00 38.74 2.74
2119 2369 4.253685 CTGTGGGTGTCTGTTTACCATAG 58.746 47.826 0.00 0.00 38.74 2.23
2120 2370 3.904965 TGTGGGTGTCTGTTTACCATAGA 59.095 43.478 0.00 0.00 38.74 1.98
2121 2371 4.348461 TGTGGGTGTCTGTTTACCATAGAA 59.652 41.667 0.00 0.00 38.74 2.10
2122 2372 5.013704 TGTGGGTGTCTGTTTACCATAGAAT 59.986 40.000 0.00 0.00 38.74 2.40
2123 2373 6.213802 TGTGGGTGTCTGTTTACCATAGAATA 59.786 38.462 0.00 0.00 38.74 1.75
2124 2374 6.537660 GTGGGTGTCTGTTTACCATAGAATAC 59.462 42.308 0.00 0.00 38.74 1.89
2125 2375 6.213802 TGGGTGTCTGTTTACCATAGAATACA 59.786 38.462 0.00 0.00 38.74 2.29
2126 2376 6.537660 GGGTGTCTGTTTACCATAGAATACAC 59.462 42.308 0.00 0.00 38.74 2.90
2127 2377 7.101054 GGTGTCTGTTTACCATAGAATACACA 58.899 38.462 0.00 0.00 36.94 3.72
2128 2378 7.277981 GGTGTCTGTTTACCATAGAATACACAG 59.722 40.741 0.00 0.00 36.94 3.66
2129 2379 6.816640 TGTCTGTTTACCATAGAATACACAGC 59.183 38.462 0.00 0.00 32.18 4.40
2130 2380 7.042335 GTCTGTTTACCATAGAATACACAGCT 58.958 38.462 0.00 0.00 32.18 4.24
2131 2381 7.222999 GTCTGTTTACCATAGAATACACAGCTC 59.777 40.741 0.00 0.00 32.18 4.09
2132 2382 7.124298 TCTGTTTACCATAGAATACACAGCTCT 59.876 37.037 0.00 0.00 32.18 4.09
2133 2383 7.041721 TGTTTACCATAGAATACACAGCTCTG 58.958 38.462 0.00 0.00 0.00 3.35
2134 2384 4.065321 ACCATAGAATACACAGCTCTGC 57.935 45.455 0.00 0.00 0.00 4.26
2135 2385 3.452264 ACCATAGAATACACAGCTCTGCA 59.548 43.478 0.00 0.00 0.00 4.41
2136 2386 4.056740 CCATAGAATACACAGCTCTGCAG 58.943 47.826 7.63 7.63 0.00 4.41
2137 2387 4.442612 CCATAGAATACACAGCTCTGCAGT 60.443 45.833 14.67 0.00 0.00 4.40
2138 2388 3.244033 AGAATACACAGCTCTGCAGTC 57.756 47.619 14.67 7.11 0.00 3.51
2139 2389 2.830923 AGAATACACAGCTCTGCAGTCT 59.169 45.455 14.67 9.44 0.00 3.24
2140 2390 2.957491 ATACACAGCTCTGCAGTCTC 57.043 50.000 14.67 4.10 0.00 3.36
2141 2391 0.891373 TACACAGCTCTGCAGTCTCC 59.109 55.000 14.67 0.67 0.00 3.71
2142 2392 1.117749 ACACAGCTCTGCAGTCTCCA 61.118 55.000 14.67 0.00 0.00 3.86
2143 2393 0.249676 CACAGCTCTGCAGTCTCCAT 59.750 55.000 14.67 0.00 0.00 3.41
2144 2394 0.982704 ACAGCTCTGCAGTCTCCATT 59.017 50.000 14.67 0.00 0.00 3.16
2145 2395 1.066286 ACAGCTCTGCAGTCTCCATTC 60.066 52.381 14.67 0.00 0.00 2.67
2146 2396 1.207570 CAGCTCTGCAGTCTCCATTCT 59.792 52.381 14.67 0.00 0.00 2.40
2147 2397 1.907936 AGCTCTGCAGTCTCCATTCTT 59.092 47.619 14.67 0.00 0.00 2.52
2148 2398 2.008329 GCTCTGCAGTCTCCATTCTTG 58.992 52.381 14.67 0.00 0.00 3.02
2149 2399 2.614987 GCTCTGCAGTCTCCATTCTTGT 60.615 50.000 14.67 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.700831 GCTCCACCCCTTTATATGATTATTAAT 57.299 33.333 0.00 0.00 0.00 1.40
14 15 8.674173 TGCTCCACCCCTTTATATGATTATTAA 58.326 33.333 0.00 0.00 0.00 1.40
15 16 8.107095 GTGCTCCACCCCTTTATATGATTATTA 58.893 37.037 0.00 0.00 0.00 0.98
16 17 6.948309 GTGCTCCACCCCTTTATATGATTATT 59.052 38.462 0.00 0.00 0.00 1.40
17 18 6.485171 GTGCTCCACCCCTTTATATGATTAT 58.515 40.000 0.00 0.00 0.00 1.28
18 19 5.876357 GTGCTCCACCCCTTTATATGATTA 58.124 41.667 0.00 0.00 0.00 1.75
19 20 4.729868 GTGCTCCACCCCTTTATATGATT 58.270 43.478 0.00 0.00 0.00 2.57
20 21 4.373156 GTGCTCCACCCCTTTATATGAT 57.627 45.455 0.00 0.00 0.00 2.45
21 22 3.857157 GTGCTCCACCCCTTTATATGA 57.143 47.619 0.00 0.00 0.00 2.15
36 37 3.860930 TTTTGGCTCGGGGGTGCTC 62.861 63.158 0.00 0.00 0.00 4.26
37 38 3.444818 TTTTTGGCTCGGGGGTGCT 62.445 57.895 0.00 0.00 0.00 4.40
38 39 2.915137 TTTTTGGCTCGGGGGTGC 60.915 61.111 0.00 0.00 0.00 5.01
59 60 6.980577 TGGGATAGATTAGGGATGTGTTTTT 58.019 36.000 0.00 0.00 0.00 1.94
60 61 6.590656 TGGGATAGATTAGGGATGTGTTTT 57.409 37.500 0.00 0.00 0.00 2.43
61 62 5.456763 GCTGGGATAGATTAGGGATGTGTTT 60.457 44.000 0.00 0.00 0.00 2.83
62 63 4.042187 GCTGGGATAGATTAGGGATGTGTT 59.958 45.833 0.00 0.00 0.00 3.32
63 64 3.584848 GCTGGGATAGATTAGGGATGTGT 59.415 47.826 0.00 0.00 0.00 3.72
64 65 3.584406 TGCTGGGATAGATTAGGGATGTG 59.416 47.826 0.00 0.00 0.00 3.21
65 66 3.584848 GTGCTGGGATAGATTAGGGATGT 59.415 47.826 0.00 0.00 0.00 3.06
66 67 3.584406 TGTGCTGGGATAGATTAGGGATG 59.416 47.826 0.00 0.00 0.00 3.51
67 68 3.874316 TGTGCTGGGATAGATTAGGGAT 58.126 45.455 0.00 0.00 0.00 3.85
68 69 3.344535 TGTGCTGGGATAGATTAGGGA 57.655 47.619 0.00 0.00 0.00 4.20
69 70 4.202503 ACAATGTGCTGGGATAGATTAGGG 60.203 45.833 0.00 0.00 0.00 3.53
70 71 4.978099 ACAATGTGCTGGGATAGATTAGG 58.022 43.478 0.00 0.00 0.00 2.69
71 72 5.614308 TGACAATGTGCTGGGATAGATTAG 58.386 41.667 0.00 0.00 0.00 1.73
82 83 4.201656 CGTGACTATTCTGACAATGTGCTG 60.202 45.833 0.00 0.00 0.00 4.41
85 86 5.405269 TGTTCGTGACTATTCTGACAATGTG 59.595 40.000 0.00 0.00 0.00 3.21
92 93 4.156190 GTCTCCTGTTCGTGACTATTCTGA 59.844 45.833 0.00 0.00 0.00 3.27
95 96 3.731264 CGGTCTCCTGTTCGTGACTATTC 60.731 52.174 0.00 0.00 0.00 1.75
100 101 0.109689 CTCGGTCTCCTGTTCGTGAC 60.110 60.000 0.00 0.00 0.00 3.67
104 105 0.448593 GAGTCTCGGTCTCCTGTTCG 59.551 60.000 0.00 0.00 0.00 3.95
134 135 5.011943 AGTGTAAAAGGTACGAATGTGGGTA 59.988 40.000 0.00 0.00 0.00 3.69
163 164 7.817962 GGAGTACCTGCGTTTTATATATGACAT 59.182 37.037 0.00 0.00 0.00 3.06
164 165 7.149973 GGAGTACCTGCGTTTTATATATGACA 58.850 38.462 0.00 0.00 0.00 3.58
165 166 6.589139 GGGAGTACCTGCGTTTTATATATGAC 59.411 42.308 0.00 0.00 35.85 3.06
182 183 6.051179 AGATTTGTTTACAGAGGGAGTACC 57.949 41.667 0.00 0.00 40.67 3.34
228 230 7.266400 GTCGAGGAAACCTAAGATCTTACATT 58.734 38.462 11.24 5.95 31.76 2.71
249 259 1.336517 CCTCTTTTGGCAGTACGTCGA 60.337 52.381 0.00 0.00 0.00 4.20
286 297 2.250646 TCGACTTCGACCGTGTCAT 58.749 52.632 0.00 0.00 44.22 3.06
315 326 5.388654 ACATGTCAAGGGAAACAGAAATCT 58.611 37.500 0.00 0.00 0.00 2.40
358 370 2.990740 TGTATCTGGCCAAGGGTTTT 57.009 45.000 7.01 0.00 0.00 2.43
370 382 4.327982 AGTGATGGGAACGATGTATCTG 57.672 45.455 0.00 0.00 0.00 2.90
371 383 5.359194 AAAGTGATGGGAACGATGTATCT 57.641 39.130 0.00 0.00 0.00 1.98
377 397 4.630069 CGAAACTAAAGTGATGGGAACGAT 59.370 41.667 0.00 0.00 0.00 3.73
379 399 3.744426 ACGAAACTAAAGTGATGGGAACG 59.256 43.478 0.00 0.00 0.00 3.95
472 500 4.530388 GACGTGCTTTTGGGTTAAGTAAC 58.470 43.478 0.00 0.00 35.50 2.50
482 510 1.069227 GCTAAGTGGACGTGCTTTTGG 60.069 52.381 8.99 5.92 0.00 3.28
491 519 4.142902 CCATTGTTTAGTGCTAAGTGGACG 60.143 45.833 8.03 0.00 42.15 4.79
539 567 2.288457 GCCAGATGCACGCTAGATTCTA 60.288 50.000 0.00 0.00 40.77 2.10
567 595 3.733344 GATTAGACGGCCGGCTGCA 62.733 63.158 43.54 29.59 43.89 4.41
587 615 4.662145 CAGTTAATCTCGTGGCAAAATCC 58.338 43.478 0.00 0.00 0.00 3.01
588 616 4.098416 GCAGTTAATCTCGTGGCAAAATC 58.902 43.478 0.00 0.00 0.00 2.17
589 617 3.758554 AGCAGTTAATCTCGTGGCAAAAT 59.241 39.130 0.00 0.00 0.00 1.82
590 618 3.146066 AGCAGTTAATCTCGTGGCAAAA 58.854 40.909 0.00 0.00 0.00 2.44
591 619 2.742053 GAGCAGTTAATCTCGTGGCAAA 59.258 45.455 0.00 0.00 0.00 3.68
630 692 3.157949 GAGGGAGGGAGGGAAGCG 61.158 72.222 0.00 0.00 0.00 4.68
663 725 1.244697 TGTCACTCTCGGCTCTCACC 61.245 60.000 0.00 0.00 0.00 4.02
685 755 4.662961 TGGGTGCGTGCAGAGTCG 62.663 66.667 0.00 0.00 0.00 4.18
705 775 1.899142 TGGGGTAAAATTTGCTCCTGC 59.101 47.619 13.70 0.00 36.76 4.85
745 815 1.720781 GGGGCCGGGAGTAATAAGTA 58.279 55.000 2.18 0.00 0.00 2.24
971 1067 0.590195 CTTTGCTTGCTTGCTCGTCT 59.410 50.000 3.47 0.00 0.00 4.18
1131 1240 3.693085 GCCATCATCTTCTGAAGCTGAAA 59.307 43.478 23.03 6.58 37.22 2.69
1163 1280 3.151912 AGAAGATGCTTGCTTGTCCTT 57.848 42.857 0.00 0.00 0.00 3.36
1178 1295 1.005569 TCCTAGACTGGCCGAAGAAGA 59.994 52.381 0.00 0.00 0.00 2.87
1179 1296 1.407258 CTCCTAGACTGGCCGAAGAAG 59.593 57.143 0.00 0.00 0.00 2.85
1180 1297 1.475403 CTCCTAGACTGGCCGAAGAA 58.525 55.000 0.00 0.00 0.00 2.52
1181 1298 1.038130 GCTCCTAGACTGGCCGAAGA 61.038 60.000 0.00 0.00 0.00 2.87
1185 1302 1.068753 CATGCTCCTAGACTGGCCG 59.931 63.158 0.00 0.00 0.00 6.13
1186 1303 1.341156 ACCATGCTCCTAGACTGGCC 61.341 60.000 0.00 0.00 0.00 5.36
1187 1304 0.179062 CACCATGCTCCTAGACTGGC 60.179 60.000 0.00 0.00 0.00 4.85
1189 1306 1.134580 CCACACCATGCTCCTAGACTG 60.135 57.143 0.00 0.00 0.00 3.51
1191 1308 0.905357 ACCACACCATGCTCCTAGAC 59.095 55.000 0.00 0.00 0.00 2.59
1192 1309 1.555075 GAACCACACCATGCTCCTAGA 59.445 52.381 0.00 0.00 0.00 2.43
1222 1347 0.458889 TACGCAATCCCTGTACGCAC 60.459 55.000 0.00 0.00 0.00 5.34
1225 1350 2.795175 ATCTACGCAATCCCTGTACG 57.205 50.000 0.00 0.00 0.00 3.67
1243 1373 3.129287 CGCAAATCAAGCAGGGACTAAAT 59.871 43.478 0.00 0.00 36.02 1.40
1249 1449 0.539438 AACCGCAAATCAAGCAGGGA 60.539 50.000 0.00 0.00 32.52 4.20
1259 1459 4.641989 AGATCTAATGAGCAAACCGCAAAT 59.358 37.500 0.00 0.00 46.13 2.32
1264 1464 2.219674 GCGAGATCTAATGAGCAAACCG 59.780 50.000 0.00 0.00 0.00 4.44
1273 1473 3.906014 TCGAGGAAGCGAGATCTAATG 57.094 47.619 0.00 0.00 35.01 1.90
1326 1526 3.452627 AGCTCCAATCTCCGTACATTTCT 59.547 43.478 0.00 0.00 0.00 2.52
1327 1527 3.798202 AGCTCCAATCTCCGTACATTTC 58.202 45.455 0.00 0.00 0.00 2.17
1328 1528 3.914426 AGCTCCAATCTCCGTACATTT 57.086 42.857 0.00 0.00 0.00 2.32
1347 1547 6.598457 ACCAATCTCAGAATCAGAACATGAAG 59.402 38.462 0.00 0.00 42.53 3.02
1349 1549 5.878669 CACCAATCTCAGAATCAGAACATGA 59.121 40.000 0.00 0.00 43.70 3.07
1403 1646 5.860941 TCAGTTCAGAGACTTCAGAGTTT 57.139 39.130 0.00 0.00 35.88 2.66
1436 1679 1.990424 CAGTACACCCATCAGGCCA 59.010 57.895 5.01 0.00 40.58 5.36
1440 1683 0.460284 GTCCGCAGTACACCCATCAG 60.460 60.000 0.00 0.00 0.00 2.90
1442 1685 1.518572 CGTCCGCAGTACACCCATC 60.519 63.158 0.00 0.00 0.00 3.51
1499 1742 0.325933 CATGGTGGAGCTGAGACCAA 59.674 55.000 11.18 0.00 42.96 3.67
1500 1743 1.556373 CCATGGTGGAGCTGAGACCA 61.556 60.000 2.57 9.86 40.96 4.02
1501 1744 1.222936 CCATGGTGGAGCTGAGACC 59.777 63.158 2.57 0.00 40.96 3.85
1502 1745 1.451028 GCCATGGTGGAGCTGAGAC 60.451 63.158 14.67 0.00 40.96 3.36
1503 1746 2.993008 GCCATGGTGGAGCTGAGA 59.007 61.111 14.67 0.00 40.96 3.27
1504 1747 2.513204 CGCCATGGTGGAGCTGAG 60.513 66.667 18.06 0.00 40.96 3.35
1509 1752 4.776322 TTCCGCGCCATGGTGGAG 62.776 66.667 26.23 13.68 46.51 3.86
1510 1753 4.776322 CTTCCGCGCCATGGTGGA 62.776 66.667 26.23 20.53 44.51 4.02
1511 1754 4.776322 TCTTCCGCGCCATGGTGG 62.776 66.667 26.23 18.65 41.55 4.61
1512 1755 3.197790 CTCTTCCGCGCCATGGTG 61.198 66.667 21.43 21.43 0.00 4.17
1513 1756 1.895020 TAACTCTTCCGCGCCATGGT 61.895 55.000 14.67 0.00 0.00 3.55
1514 1757 1.153449 TAACTCTTCCGCGCCATGG 60.153 57.895 7.63 7.63 0.00 3.66
1515 1758 1.429148 GGTAACTCTTCCGCGCCATG 61.429 60.000 0.00 0.00 0.00 3.66
1516 1759 1.153429 GGTAACTCTTCCGCGCCAT 60.153 57.895 0.00 0.00 0.00 4.40
1517 1760 2.263540 GGTAACTCTTCCGCGCCA 59.736 61.111 0.00 0.00 0.00 5.69
1518 1761 1.810030 CTGGTAACTCTTCCGCGCC 60.810 63.158 0.00 0.00 37.61 6.53
1519 1762 2.453638 GCTGGTAACTCTTCCGCGC 61.454 63.158 0.00 0.00 37.61 6.86
1520 1763 1.810030 GGCTGGTAACTCTTCCGCG 60.810 63.158 0.00 0.00 37.61 6.46
1521 1764 0.460459 GAGGCTGGTAACTCTTCCGC 60.460 60.000 0.00 0.00 37.61 5.54
1522 1765 0.179134 CGAGGCTGGTAACTCTTCCG 60.179 60.000 0.00 0.00 37.61 4.30
1523 1766 0.460459 GCGAGGCTGGTAACTCTTCC 60.460 60.000 0.00 0.00 37.61 3.46
1524 1767 0.802607 CGCGAGGCTGGTAACTCTTC 60.803 60.000 0.00 0.00 37.61 2.87
1525 1768 1.215647 CGCGAGGCTGGTAACTCTT 59.784 57.895 0.00 0.00 37.61 2.85
1526 1769 2.885861 CGCGAGGCTGGTAACTCT 59.114 61.111 0.00 0.00 37.61 3.24
1527 1770 2.886124 GCGCGAGGCTGGTAACTC 60.886 66.667 12.10 0.00 39.11 3.01
1528 1771 4.796231 CGCGCGAGGCTGGTAACT 62.796 66.667 28.94 0.00 40.44 2.24
1574 1817 3.945434 GTCATGGCGCTGCATCGG 61.945 66.667 12.41 0.00 0.00 4.18
1575 1818 3.197092 TGTCATGGCGCTGCATCG 61.197 61.111 7.64 5.40 0.00 3.84
1576 1819 2.406401 GTGTCATGGCGCTGCATC 59.594 61.111 7.64 0.00 0.00 3.91
1577 1820 3.502455 CGTGTCATGGCGCTGCAT 61.502 61.111 7.64 0.00 0.00 3.96
1578 1821 4.678499 TCGTGTCATGGCGCTGCA 62.678 61.111 7.64 0.00 0.00 4.41
1579 1822 3.857854 CTCGTGTCATGGCGCTGC 61.858 66.667 7.64 0.00 0.00 5.25
1580 1823 2.433145 ACTCGTGTCATGGCGCTG 60.433 61.111 7.64 0.00 0.00 5.18
1581 1824 2.125912 GACTCGTGTCATGGCGCT 60.126 61.111 7.64 0.00 42.48 5.92
1582 1825 3.545481 CGACTCGTGTCATGGCGC 61.545 66.667 17.02 0.00 43.06 6.53
1583 1826 1.202973 GATCGACTCGTGTCATGGCG 61.203 60.000 17.02 4.13 43.06 5.69
1584 1827 1.202973 CGATCGACTCGTGTCATGGC 61.203 60.000 10.26 0.00 43.06 4.40
1585 1828 2.860051 CGATCGACTCGTGTCATGG 58.140 57.895 10.26 7.71 43.06 3.66
1599 1842 0.535102 ATTGGCAACCCCGATCGATC 60.535 55.000 18.66 15.68 31.60 3.69
1600 1843 0.106719 AATTGGCAACCCCGATCGAT 60.107 50.000 18.66 0.00 36.65 3.59
1601 1844 0.322997 AAATTGGCAACCCCGATCGA 60.323 50.000 18.66 0.00 36.65 3.59
1602 1845 0.179140 CAAATTGGCAACCCCGATCG 60.179 55.000 8.51 8.51 36.65 3.69
1603 1846 0.460109 GCAAATTGGCAACCCCGATC 60.460 55.000 0.00 0.00 36.65 3.69
1604 1847 1.596408 GCAAATTGGCAACCCCGAT 59.404 52.632 0.00 0.00 39.57 4.18
1605 1848 2.578714 GGCAAATTGGCAACCCCGA 61.579 57.895 14.91 0.00 43.14 5.14
1606 1849 2.047370 GGCAAATTGGCAACCCCG 60.047 61.111 14.91 0.00 43.14 5.73
1616 1859 9.950680 CTACTTAATCGTATCAATTGGCAAATT 57.049 29.630 3.01 0.00 36.39 1.82
1617 1860 8.076178 GCTACTTAATCGTATCAATTGGCAAAT 58.924 33.333 3.01 0.00 0.00 2.32
1618 1861 7.066404 TGCTACTTAATCGTATCAATTGGCAAA 59.934 33.333 3.01 0.00 0.00 3.68
1619 1862 6.540551 TGCTACTTAATCGTATCAATTGGCAA 59.459 34.615 0.68 0.68 0.00 4.52
1620 1863 6.052360 TGCTACTTAATCGTATCAATTGGCA 58.948 36.000 5.42 0.00 0.00 4.92
1621 1864 6.539649 TGCTACTTAATCGTATCAATTGGC 57.460 37.500 5.42 0.00 0.00 4.52
1623 1866 9.746711 GCTATTGCTACTTAATCGTATCAATTG 57.253 33.333 0.00 0.00 37.39 2.32
1624 1867 8.648097 CGCTATTGCTACTTAATCGTATCAATT 58.352 33.333 8.40 0.00 37.39 2.32
1625 1868 7.201444 GCGCTATTGCTACTTAATCGTATCAAT 60.201 37.037 0.00 8.25 38.77 2.57
1626 1869 6.089016 GCGCTATTGCTACTTAATCGTATCAA 59.911 38.462 0.00 0.00 36.97 2.57
1627 1870 5.571741 GCGCTATTGCTACTTAATCGTATCA 59.428 40.000 0.00 0.00 36.97 2.15
1628 1871 5.275326 CGCGCTATTGCTACTTAATCGTATC 60.275 44.000 5.56 0.00 36.97 2.24
1629 1872 4.557690 CGCGCTATTGCTACTTAATCGTAT 59.442 41.667 5.56 0.00 36.97 3.06
1630 1873 3.910170 CGCGCTATTGCTACTTAATCGTA 59.090 43.478 5.56 0.00 36.97 3.43
1631 1874 2.724690 CGCGCTATTGCTACTTAATCGT 59.275 45.455 5.56 0.00 36.97 3.73
1632 1875 2.724690 ACGCGCTATTGCTACTTAATCG 59.275 45.455 5.73 0.00 36.97 3.34
1633 1876 4.710528 AACGCGCTATTGCTACTTAATC 57.289 40.909 5.73 0.00 36.97 1.75
1634 1877 4.025145 GGAAACGCGCTATTGCTACTTAAT 60.025 41.667 5.73 0.00 36.97 1.40
1635 1878 3.307782 GGAAACGCGCTATTGCTACTTAA 59.692 43.478 5.73 0.00 36.97 1.85
1636 1879 2.861935 GGAAACGCGCTATTGCTACTTA 59.138 45.455 5.73 0.00 36.97 2.24
1637 1880 1.664151 GGAAACGCGCTATTGCTACTT 59.336 47.619 5.73 0.00 36.97 2.24
1638 1881 1.287425 GGAAACGCGCTATTGCTACT 58.713 50.000 5.73 0.00 36.97 2.57
1639 1882 1.003851 TGGAAACGCGCTATTGCTAC 58.996 50.000 5.73 0.00 36.97 3.58
1640 1883 1.003851 GTGGAAACGCGCTATTGCTA 58.996 50.000 5.73 0.00 36.97 3.49
1641 1884 0.953471 TGTGGAAACGCGCTATTGCT 60.953 50.000 5.73 0.00 46.31 3.91
1642 1885 0.109964 TTGTGGAAACGCGCTATTGC 60.110 50.000 5.73 5.12 46.31 3.56
1643 1886 2.323939 TTTGTGGAAACGCGCTATTG 57.676 45.000 5.73 0.00 46.31 1.90
1644 1887 4.688511 TTATTTGTGGAAACGCGCTATT 57.311 36.364 5.73 0.00 46.31 1.73
1645 1888 4.155280 AGTTTATTTGTGGAAACGCGCTAT 59.845 37.500 5.73 0.00 46.31 2.97
1646 1889 3.499157 AGTTTATTTGTGGAAACGCGCTA 59.501 39.130 5.73 0.00 46.31 4.26
1647 1890 2.292292 AGTTTATTTGTGGAAACGCGCT 59.708 40.909 5.73 0.00 46.31 5.92
1648 1891 2.655001 GAGTTTATTTGTGGAAACGCGC 59.345 45.455 5.73 0.00 46.31 6.86
1649 1892 3.231160 GGAGTTTATTTGTGGAAACGCG 58.769 45.455 3.53 3.53 46.31 6.01
1650 1893 3.978855 GTGGAGTTTATTTGTGGAAACGC 59.021 43.478 0.00 0.00 42.66 4.84
1651 1894 5.008217 TCTGTGGAGTTTATTTGTGGAAACG 59.992 40.000 0.00 0.00 0.00 3.60
1652 1895 6.385649 TCTGTGGAGTTTATTTGTGGAAAC 57.614 37.500 0.00 0.00 0.00 2.78
1653 1896 8.573035 GTTATCTGTGGAGTTTATTTGTGGAAA 58.427 33.333 0.00 0.00 0.00 3.13
1654 1897 7.721842 TGTTATCTGTGGAGTTTATTTGTGGAA 59.278 33.333 0.00 0.00 0.00 3.53
1655 1898 7.174253 GTGTTATCTGTGGAGTTTATTTGTGGA 59.826 37.037 0.00 0.00 0.00 4.02
1656 1899 7.040755 TGTGTTATCTGTGGAGTTTATTTGTGG 60.041 37.037 0.00 0.00 0.00 4.17
1657 1900 7.870826 TGTGTTATCTGTGGAGTTTATTTGTG 58.129 34.615 0.00 0.00 0.00 3.33
1658 1901 8.458573 TTGTGTTATCTGTGGAGTTTATTTGT 57.541 30.769 0.00 0.00 0.00 2.83
1659 1902 9.180678 GTTTGTGTTATCTGTGGAGTTTATTTG 57.819 33.333 0.00 0.00 0.00 2.32
1660 1903 8.908903 TGTTTGTGTTATCTGTGGAGTTTATTT 58.091 29.630 0.00 0.00 0.00 1.40
1661 1904 8.458573 TGTTTGTGTTATCTGTGGAGTTTATT 57.541 30.769 0.00 0.00 0.00 1.40
1662 1905 7.719633 ACTGTTTGTGTTATCTGTGGAGTTTAT 59.280 33.333 0.00 0.00 0.00 1.40
1663 1906 7.051623 ACTGTTTGTGTTATCTGTGGAGTTTA 58.948 34.615 0.00 0.00 0.00 2.01
1664 1907 5.885912 ACTGTTTGTGTTATCTGTGGAGTTT 59.114 36.000 0.00 0.00 0.00 2.66
1665 1908 5.437060 ACTGTTTGTGTTATCTGTGGAGTT 58.563 37.500 0.00 0.00 0.00 3.01
1666 1909 5.036117 ACTGTTTGTGTTATCTGTGGAGT 57.964 39.130 0.00 0.00 0.00 3.85
1667 1910 6.706270 ACTTACTGTTTGTGTTATCTGTGGAG 59.294 38.462 0.00 0.00 0.00 3.86
1668 1911 6.588204 ACTTACTGTTTGTGTTATCTGTGGA 58.412 36.000 0.00 0.00 0.00 4.02
1669 1912 6.861065 ACTTACTGTTTGTGTTATCTGTGG 57.139 37.500 0.00 0.00 0.00 4.17
1670 1913 7.499046 CGTACTTACTGTTTGTGTTATCTGTG 58.501 38.462 0.00 0.00 0.00 3.66
1671 1914 6.145048 GCGTACTTACTGTTTGTGTTATCTGT 59.855 38.462 0.00 0.00 0.00 3.41
1672 1915 6.365247 AGCGTACTTACTGTTTGTGTTATCTG 59.635 38.462 0.00 0.00 0.00 2.90
1673 1916 6.453092 AGCGTACTTACTGTTTGTGTTATCT 58.547 36.000 0.00 0.00 0.00 1.98
1674 1917 6.701432 AGCGTACTTACTGTTTGTGTTATC 57.299 37.500 0.00 0.00 0.00 1.75
1675 1918 6.565247 GCAAGCGTACTTACTGTTTGTGTTAT 60.565 38.462 0.00 0.00 33.74 1.89
1676 1919 5.276963 GCAAGCGTACTTACTGTTTGTGTTA 60.277 40.000 0.00 0.00 33.74 2.41
1677 1920 4.495184 GCAAGCGTACTTACTGTTTGTGTT 60.495 41.667 0.00 0.00 33.74 3.32
1678 1921 3.001939 GCAAGCGTACTTACTGTTTGTGT 59.998 43.478 0.00 0.00 33.74 3.72
1679 1922 3.001838 TGCAAGCGTACTTACTGTTTGTG 59.998 43.478 0.00 0.00 33.74 3.33
1680 1923 3.001939 GTGCAAGCGTACTTACTGTTTGT 59.998 43.478 0.00 0.00 33.74 2.83
1681 1924 3.541711 GTGCAAGCGTACTTACTGTTTG 58.458 45.455 0.00 0.00 33.74 2.93
1682 1925 2.220133 CGTGCAAGCGTACTTACTGTTT 59.780 45.455 0.00 0.00 33.74 2.83
1683 1926 1.790623 CGTGCAAGCGTACTTACTGTT 59.209 47.619 0.00 0.00 33.74 3.16
1684 1927 1.415374 CGTGCAAGCGTACTTACTGT 58.585 50.000 0.00 0.00 33.74 3.55
1685 1928 0.093026 GCGTGCAAGCGTACTTACTG 59.907 55.000 9.33 0.00 33.74 2.74
1686 1929 0.038526 AGCGTGCAAGCGTACTTACT 60.039 50.000 18.93 0.00 43.00 2.24
1687 1930 0.365859 GAGCGTGCAAGCGTACTTAC 59.634 55.000 18.93 2.84 43.00 2.34
1688 1931 1.068832 CGAGCGTGCAAGCGTACTTA 61.069 55.000 18.93 0.00 43.00 2.24
1689 1932 2.372690 CGAGCGTGCAAGCGTACTT 61.373 57.895 18.93 0.47 43.00 2.24
1690 1933 2.543687 ATCGAGCGTGCAAGCGTACT 62.544 55.000 18.93 0.89 43.00 2.73
1691 1934 2.067453 GATCGAGCGTGCAAGCGTAC 62.067 60.000 18.93 13.00 43.00 3.67
1692 1935 1.872234 GATCGAGCGTGCAAGCGTA 60.872 57.895 18.93 8.85 43.00 4.42
1693 1936 3.181967 GATCGAGCGTGCAAGCGT 61.182 61.111 18.93 7.59 43.00 5.07
1694 1937 2.854214 GAGATCGAGCGTGCAAGCG 61.854 63.158 18.93 5.60 43.00 4.68
1695 1938 1.080995 AAGAGATCGAGCGTGCAAGC 61.081 55.000 17.43 17.43 37.41 4.01
1696 1939 0.644331 CAAGAGATCGAGCGTGCAAG 59.356 55.000 0.00 0.00 0.00 4.01
1697 1940 0.038251 ACAAGAGATCGAGCGTGCAA 60.038 50.000 0.00 0.00 0.00 4.08
1698 1941 0.038251 AACAAGAGATCGAGCGTGCA 60.038 50.000 0.00 0.00 0.00 4.57
1699 1942 0.642800 GAACAAGAGATCGAGCGTGC 59.357 55.000 0.00 0.00 0.00 5.34
1700 1943 2.270275 AGAACAAGAGATCGAGCGTG 57.730 50.000 0.00 0.00 0.00 5.34
1701 1944 2.490115 AGAAGAACAAGAGATCGAGCGT 59.510 45.455 0.00 0.00 0.00 5.07
1702 1945 3.105203 GAGAAGAACAAGAGATCGAGCG 58.895 50.000 0.00 0.00 0.00 5.03
1703 1946 4.103365 TGAGAAGAACAAGAGATCGAGC 57.897 45.455 0.00 0.00 0.00 5.03
1704 1947 6.385843 TCTTTGAGAAGAACAAGAGATCGAG 58.614 40.000 0.00 0.00 38.91 4.04
1705 1948 6.332735 TCTTTGAGAAGAACAAGAGATCGA 57.667 37.500 0.00 0.00 38.91 3.59
1717 1960 5.059833 GGAGTGCTCTTTTCTTTGAGAAGA 58.940 41.667 0.00 1.59 40.07 2.87
1718 1961 4.818546 TGGAGTGCTCTTTTCTTTGAGAAG 59.181 41.667 0.00 0.00 35.37 2.85
1719 1962 4.780815 TGGAGTGCTCTTTTCTTTGAGAA 58.219 39.130 0.00 0.00 31.28 2.87
1720 1963 4.422073 TGGAGTGCTCTTTTCTTTGAGA 57.578 40.909 0.00 0.00 32.44 3.27
1721 1964 4.155644 GGATGGAGTGCTCTTTTCTTTGAG 59.844 45.833 0.00 0.00 0.00 3.02
1722 1965 4.074970 GGATGGAGTGCTCTTTTCTTTGA 58.925 43.478 0.00 0.00 0.00 2.69
1723 1966 3.192212 GGGATGGAGTGCTCTTTTCTTTG 59.808 47.826 0.00 0.00 0.00 2.77
1724 1967 3.181429 TGGGATGGAGTGCTCTTTTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
1725 1968 2.376518 TGGGATGGAGTGCTCTTTTCTT 59.623 45.455 0.00 0.00 0.00 2.52
1726 1969 1.988107 TGGGATGGAGTGCTCTTTTCT 59.012 47.619 0.00 0.00 0.00 2.52
1727 1970 2.496899 TGGGATGGAGTGCTCTTTTC 57.503 50.000 0.00 0.00 0.00 2.29
1728 1971 2.042162 ACATGGGATGGAGTGCTCTTTT 59.958 45.455 0.00 0.00 33.60 2.27
1729 1972 1.637553 ACATGGGATGGAGTGCTCTTT 59.362 47.619 0.00 0.00 33.60 2.52
1730 1973 1.293062 ACATGGGATGGAGTGCTCTT 58.707 50.000 0.00 0.00 33.60 2.85
1731 1974 1.293062 AACATGGGATGGAGTGCTCT 58.707 50.000 0.00 0.00 33.60 4.09
1732 1975 2.565841 GTAACATGGGATGGAGTGCTC 58.434 52.381 0.00 0.00 33.60 4.26
1733 1976 1.212935 GGTAACATGGGATGGAGTGCT 59.787 52.381 0.00 0.00 33.60 4.40
1734 1977 1.064758 TGGTAACATGGGATGGAGTGC 60.065 52.381 0.00 0.00 46.17 4.40
1745 1988 8.341173 GAGAGAGCTCAAAATATTGGTAACATG 58.659 37.037 17.77 0.00 43.68 3.21
1746 1989 8.270744 AGAGAGAGCTCAAAATATTGGTAACAT 58.729 33.333 17.77 0.00 45.60 2.71
1747 1990 7.624549 AGAGAGAGCTCAAAATATTGGTAACA 58.375 34.615 17.77 0.00 44.95 2.41
1748 1991 9.255304 CTAGAGAGAGCTCAAAATATTGGTAAC 57.745 37.037 17.77 0.00 43.81 2.50
1749 1992 7.928706 GCTAGAGAGAGCTCAAAATATTGGTAA 59.071 37.037 17.77 0.00 43.81 2.85
1750 1993 7.437748 GCTAGAGAGAGCTCAAAATATTGGTA 58.562 38.462 17.77 0.00 43.81 3.25
1751 1994 6.287525 GCTAGAGAGAGCTCAAAATATTGGT 58.712 40.000 17.77 0.00 43.81 3.67
1752 1995 5.404968 CGCTAGAGAGAGCTCAAAATATTGG 59.595 44.000 17.77 0.00 43.81 3.16
1753 1996 5.982516 ACGCTAGAGAGAGCTCAAAATATTG 59.017 40.000 17.77 2.47 43.81 1.90
1754 1997 6.155475 ACGCTAGAGAGAGCTCAAAATATT 57.845 37.500 17.77 0.00 43.81 1.28
1755 1998 5.782893 ACGCTAGAGAGAGCTCAAAATAT 57.217 39.130 17.77 0.00 43.81 1.28
1756 1999 5.105716 ACAACGCTAGAGAGAGCTCAAAATA 60.106 40.000 17.77 2.65 43.81 1.40
1757 2000 4.180057 CAACGCTAGAGAGAGCTCAAAAT 58.820 43.478 17.77 1.46 43.81 1.82
1758 2001 3.005897 ACAACGCTAGAGAGAGCTCAAAA 59.994 43.478 17.77 0.00 43.81 2.44
1759 2002 2.558795 ACAACGCTAGAGAGAGCTCAAA 59.441 45.455 17.77 0.00 43.81 2.69
1760 2003 2.163509 ACAACGCTAGAGAGAGCTCAA 58.836 47.619 17.77 0.00 43.81 3.02
1761 2004 1.827681 ACAACGCTAGAGAGAGCTCA 58.172 50.000 17.77 0.00 43.81 4.26
1762 2005 2.478879 GGAACAACGCTAGAGAGAGCTC 60.479 54.545 5.27 5.27 40.51 4.09
1763 2006 1.474879 GGAACAACGCTAGAGAGAGCT 59.525 52.381 0.00 0.00 40.51 4.09
1764 2007 1.470112 GGGAACAACGCTAGAGAGAGC 60.470 57.143 0.00 0.00 39.20 4.09
1765 2008 1.819288 TGGGAACAACGCTAGAGAGAG 59.181 52.381 0.00 0.00 37.44 3.20
1766 2009 1.819288 CTGGGAACAACGCTAGAGAGA 59.181 52.381 0.00 0.00 42.06 3.10
1767 2010 1.546476 ACTGGGAACAACGCTAGAGAG 59.454 52.381 0.00 0.00 42.06 3.20
1768 2011 1.629043 ACTGGGAACAACGCTAGAGA 58.371 50.000 0.00 0.00 42.06 3.10
1769 2012 2.338500 GAACTGGGAACAACGCTAGAG 58.662 52.381 0.00 0.00 42.06 2.43
1770 2013 1.001633 GGAACTGGGAACAACGCTAGA 59.998 52.381 0.00 0.00 42.06 2.43
1771 2014 1.439679 GGAACTGGGAACAACGCTAG 58.560 55.000 0.00 0.00 42.06 3.42
1772 2015 0.035739 GGGAACTGGGAACAACGCTA 59.964 55.000 0.00 0.00 42.06 4.26
1773 2016 1.228154 GGGAACTGGGAACAACGCT 60.228 57.895 0.00 0.00 42.06 5.07
1774 2017 1.527380 TGGGAACTGGGAACAACGC 60.527 57.895 0.00 0.00 42.06 4.84
1775 2018 1.170290 GGTGGGAACTGGGAACAACG 61.170 60.000 0.00 0.00 42.06 4.10
1776 2019 0.106419 TGGTGGGAACTGGGAACAAC 60.106 55.000 0.00 0.00 42.06 3.32
1777 2020 0.106419 GTGGTGGGAACTGGGAACAA 60.106 55.000 0.00 0.00 42.06 2.83
1778 2021 0.991355 AGTGGTGGGAACTGGGAACA 60.991 55.000 0.00 0.00 39.59 3.18
1779 2022 0.185175 AAGTGGTGGGAACTGGGAAC 59.815 55.000 0.00 0.00 0.00 3.62
1780 2023 0.184933 CAAGTGGTGGGAACTGGGAA 59.815 55.000 0.00 0.00 0.00 3.97
1781 2024 0.991355 ACAAGTGGTGGGAACTGGGA 60.991 55.000 0.00 0.00 0.00 4.37
1782 2025 0.823356 CACAAGTGGTGGGAACTGGG 60.823 60.000 0.00 0.00 44.04 4.45
1783 2026 2.719376 CACAAGTGGTGGGAACTGG 58.281 57.895 0.00 0.00 44.04 4.00
1792 2035 0.244994 TTGCGCAAAACACAAGTGGT 59.755 45.000 22.78 0.00 34.19 4.16
1793 2036 0.644843 GTTGCGCAAAACACAAGTGG 59.355 50.000 26.87 0.00 34.19 4.00
1794 2037 1.627879 AGTTGCGCAAAACACAAGTG 58.372 45.000 26.87 0.00 32.21 3.16
1795 2038 2.422127 AGTAGTTGCGCAAAACACAAGT 59.578 40.909 26.87 6.47 32.21 3.16
1796 2039 3.065019 AGTAGTTGCGCAAAACACAAG 57.935 42.857 26.87 0.00 32.21 3.16
1797 2040 3.547214 GCTAGTAGTTGCGCAAAACACAA 60.547 43.478 26.87 13.71 32.21 3.33
1798 2041 2.032377 GCTAGTAGTTGCGCAAAACACA 60.032 45.455 26.87 15.64 32.21 3.72
1799 2042 2.571206 GCTAGTAGTTGCGCAAAACAC 58.429 47.619 26.87 21.20 32.21 3.32
1800 2043 1.193650 CGCTAGTAGTTGCGCAAAACA 59.806 47.619 26.87 10.06 45.50 2.83
1801 2044 1.865725 CGCTAGTAGTTGCGCAAAAC 58.134 50.000 26.87 24.37 45.50 2.43
1808 2051 3.181478 ACTCCAATACCGCTAGTAGTTGC 60.181 47.826 0.00 0.00 33.42 4.17
1809 2052 4.650754 ACTCCAATACCGCTAGTAGTTG 57.349 45.455 0.00 0.00 33.42 3.16
1810 2053 6.973460 AATACTCCAATACCGCTAGTAGTT 57.027 37.500 0.00 0.00 33.42 2.24
1811 2054 8.647256 AATAATACTCCAATACCGCTAGTAGT 57.353 34.615 0.00 0.00 33.42 2.73
1812 2055 9.924650 AAAATAATACTCCAATACCGCTAGTAG 57.075 33.333 0.00 0.00 33.42 2.57
1813 2056 9.918630 GAAAATAATACTCCAATACCGCTAGTA 57.081 33.333 0.00 0.00 34.76 1.82
1814 2057 8.648693 AGAAAATAATACTCCAATACCGCTAGT 58.351 33.333 0.00 0.00 0.00 2.57
1815 2058 9.490379 AAGAAAATAATACTCCAATACCGCTAG 57.510 33.333 0.00 0.00 0.00 3.42
1816 2059 9.841295 AAAGAAAATAATACTCCAATACCGCTA 57.159 29.630 0.00 0.00 0.00 4.26
1817 2060 8.747538 AAAGAAAATAATACTCCAATACCGCT 57.252 30.769 0.00 0.00 0.00 5.52
1846 2089 8.819974 GCGCTGTTAGGTACAACTAATAAATTA 58.180 33.333 0.00 0.00 36.02 1.40
1847 2090 7.334921 TGCGCTGTTAGGTACAACTAATAAATT 59.665 33.333 9.73 0.00 36.02 1.82
1848 2091 6.819649 TGCGCTGTTAGGTACAACTAATAAAT 59.180 34.615 9.73 0.00 36.02 1.40
1849 2092 6.164876 TGCGCTGTTAGGTACAACTAATAAA 58.835 36.000 9.73 0.00 36.02 1.40
1850 2093 5.722263 TGCGCTGTTAGGTACAACTAATAA 58.278 37.500 9.73 0.00 36.02 1.40
1851 2094 5.327616 TGCGCTGTTAGGTACAACTAATA 57.672 39.130 9.73 0.00 36.02 0.98
1852 2095 4.196626 TGCGCTGTTAGGTACAACTAAT 57.803 40.909 9.73 0.00 36.02 1.73
1853 2096 3.663995 TGCGCTGTTAGGTACAACTAA 57.336 42.857 9.73 0.00 36.02 2.24
1854 2097 3.663995 TTGCGCTGTTAGGTACAACTA 57.336 42.857 9.73 0.00 36.02 2.24
1855 2098 2.536761 TTGCGCTGTTAGGTACAACT 57.463 45.000 9.73 0.00 36.02 3.16
1856 2099 3.824414 AATTGCGCTGTTAGGTACAAC 57.176 42.857 9.73 0.00 36.02 3.32
1857 2100 3.610585 GCAAATTGCGCTGTTAGGTACAA 60.611 43.478 9.73 0.00 32.30 2.41
1858 2101 2.095466 GCAAATTGCGCTGTTAGGTACA 60.095 45.455 9.73 0.00 31.71 2.90
1859 2102 2.515912 GCAAATTGCGCTGTTAGGTAC 58.484 47.619 9.73 0.00 31.71 3.34
1860 2103 2.911819 GCAAATTGCGCTGTTAGGTA 57.088 45.000 9.73 0.00 31.71 3.08
1861 2104 3.792716 GCAAATTGCGCTGTTAGGT 57.207 47.368 9.73 0.00 31.71 3.08
1871 2114 6.128742 CCTTTGACTCAACTAATGCAAATTGC 60.129 38.462 11.58 11.58 45.29 3.56
1872 2115 6.128742 GCCTTTGACTCAACTAATGCAAATTG 60.129 38.462 0.00 0.00 0.00 2.32
1873 2116 5.928264 GCCTTTGACTCAACTAATGCAAATT 59.072 36.000 0.00 0.00 0.00 1.82
1874 2117 5.010922 TGCCTTTGACTCAACTAATGCAAAT 59.989 36.000 0.00 0.00 0.00 2.32
1875 2118 4.340666 TGCCTTTGACTCAACTAATGCAAA 59.659 37.500 0.00 0.00 0.00 3.68
1876 2119 3.888323 TGCCTTTGACTCAACTAATGCAA 59.112 39.130 0.00 0.00 0.00 4.08
1877 2120 3.485394 TGCCTTTGACTCAACTAATGCA 58.515 40.909 0.00 0.00 0.00 3.96
1878 2121 3.119708 CCTGCCTTTGACTCAACTAATGC 60.120 47.826 0.00 0.00 0.00 3.56
1879 2122 3.441572 CCCTGCCTTTGACTCAACTAATG 59.558 47.826 0.00 0.00 0.00 1.90
1880 2123 3.690460 CCCTGCCTTTGACTCAACTAAT 58.310 45.455 0.00 0.00 0.00 1.73
1881 2124 2.814097 GCCCTGCCTTTGACTCAACTAA 60.814 50.000 0.00 0.00 0.00 2.24
1882 2125 1.271379 GCCCTGCCTTTGACTCAACTA 60.271 52.381 0.00 0.00 0.00 2.24
1883 2126 0.538287 GCCCTGCCTTTGACTCAACT 60.538 55.000 0.00 0.00 0.00 3.16
1884 2127 1.527433 GGCCCTGCCTTTGACTCAAC 61.527 60.000 0.00 0.00 46.69 3.18
1885 2128 1.228552 GGCCCTGCCTTTGACTCAA 60.229 57.895 0.00 0.00 46.69 3.02
1886 2129 2.436109 GGCCCTGCCTTTGACTCA 59.564 61.111 0.00 0.00 46.69 3.41
1922 2165 8.742125 TCAGGATAATGTAGGGATCTATTGTT 57.258 34.615 0.00 0.00 0.00 2.83
1934 2177 7.601886 CCTTGTAGCATTCTCAGGATAATGTAG 59.398 40.741 8.56 1.73 35.86 2.74
1938 2181 6.506538 ACCTTGTAGCATTCTCAGGATAAT 57.493 37.500 0.00 0.00 0.00 1.28
1950 2193 1.134491 GCCGGTCTTACCTTGTAGCAT 60.134 52.381 1.90 0.00 35.66 3.79
1955 2198 2.660802 CGGCCGGTCTTACCTTGT 59.339 61.111 20.10 0.00 35.66 3.16
1990 2233 2.703536 TGCTCCCCGTGATAATACATGT 59.296 45.455 2.69 2.69 0.00 3.21
1994 2237 3.963428 ATCTGCTCCCCGTGATAATAC 57.037 47.619 0.00 0.00 0.00 1.89
1995 2238 4.346709 TCAAATCTGCTCCCCGTGATAATA 59.653 41.667 0.00 0.00 0.00 0.98
2067 2317 1.270732 ACAAGCTGCTCACCTTCAGAG 60.271 52.381 1.00 0.00 36.21 3.35
2068 2318 0.761187 ACAAGCTGCTCACCTTCAGA 59.239 50.000 1.00 0.00 32.26 3.27
2069 2319 2.462456 TACAAGCTGCTCACCTTCAG 57.538 50.000 1.00 0.00 0.00 3.02
2070 2320 2.928801 TTACAAGCTGCTCACCTTCA 57.071 45.000 1.00 0.00 0.00 3.02
2071 2321 3.565902 AGTTTTACAAGCTGCTCACCTTC 59.434 43.478 1.00 0.00 0.00 3.46
2072 2322 3.316308 CAGTTTTACAAGCTGCTCACCTT 59.684 43.478 1.00 0.00 0.00 3.50
2073 2323 2.880890 CAGTTTTACAAGCTGCTCACCT 59.119 45.455 1.00 0.00 0.00 4.00
2074 2324 2.878406 TCAGTTTTACAAGCTGCTCACC 59.122 45.455 1.00 0.00 0.00 4.02
2075 2325 3.304057 GGTCAGTTTTACAAGCTGCTCAC 60.304 47.826 1.00 0.00 0.00 3.51
2076 2326 2.878406 GGTCAGTTTTACAAGCTGCTCA 59.122 45.455 1.00 0.00 0.00 4.26
2077 2327 3.058639 CAGGTCAGTTTTACAAGCTGCTC 60.059 47.826 1.00 0.00 31.39 4.26
2078 2328 2.880890 CAGGTCAGTTTTACAAGCTGCT 59.119 45.455 0.00 0.00 31.39 4.24
2079 2329 2.618709 ACAGGTCAGTTTTACAAGCTGC 59.381 45.455 0.00 0.00 40.08 5.25
2080 2330 3.003689 CCACAGGTCAGTTTTACAAGCTG 59.996 47.826 0.00 0.00 41.69 4.24
2081 2331 3.214328 CCACAGGTCAGTTTTACAAGCT 58.786 45.455 0.00 0.00 0.00 3.74
2082 2332 2.293399 CCCACAGGTCAGTTTTACAAGC 59.707 50.000 0.00 0.00 0.00 4.01
2083 2333 3.315191 CACCCACAGGTCAGTTTTACAAG 59.685 47.826 0.00 0.00 46.45 3.16
2084 2334 3.283751 CACCCACAGGTCAGTTTTACAA 58.716 45.455 0.00 0.00 46.45 2.41
2085 2335 2.240160 ACACCCACAGGTCAGTTTTACA 59.760 45.455 0.00 0.00 46.45 2.41
2086 2336 2.876550 GACACCCACAGGTCAGTTTTAC 59.123 50.000 0.00 0.00 46.45 2.01
2087 2337 2.775384 AGACACCCACAGGTCAGTTTTA 59.225 45.455 0.00 0.00 46.45 1.52
2088 2338 1.564348 AGACACCCACAGGTCAGTTTT 59.436 47.619 0.00 0.00 46.45 2.43
2089 2339 1.134098 CAGACACCCACAGGTCAGTTT 60.134 52.381 0.00 0.00 46.45 2.66
2090 2340 0.469917 CAGACACCCACAGGTCAGTT 59.530 55.000 0.00 0.00 46.45 3.16
2091 2341 0.691078 ACAGACACCCACAGGTCAGT 60.691 55.000 0.00 0.00 46.45 3.41
2092 2342 0.469917 AACAGACACCCACAGGTCAG 59.530 55.000 0.00 0.00 46.45 3.51
2093 2343 0.916086 AAACAGACACCCACAGGTCA 59.084 50.000 0.00 0.00 46.45 4.02
2094 2344 2.490991 GTAAACAGACACCCACAGGTC 58.509 52.381 0.00 0.00 46.45 3.85
2096 2346 1.142060 TGGTAAACAGACACCCACAGG 59.858 52.381 0.00 0.00 40.04 4.00
2097 2347 2.631160 TGGTAAACAGACACCCACAG 57.369 50.000 0.00 0.00 33.61 3.66
2098 2348 3.904965 TCTATGGTAAACAGACACCCACA 59.095 43.478 0.00 0.00 33.61 4.17
2099 2349 4.546829 TCTATGGTAAACAGACACCCAC 57.453 45.455 0.00 0.00 33.61 4.61
2100 2350 5.772393 ATTCTATGGTAAACAGACACCCA 57.228 39.130 0.00 0.00 33.61 4.51
2101 2351 6.537660 GTGTATTCTATGGTAAACAGACACCC 59.462 42.308 0.00 0.00 33.61 4.61
2102 2352 7.101054 TGTGTATTCTATGGTAAACAGACACC 58.899 38.462 0.00 0.00 35.24 4.16
2103 2353 7.201530 GCTGTGTATTCTATGGTAAACAGACAC 60.202 40.741 6.84 0.00 36.71 3.67
2104 2354 6.816640 GCTGTGTATTCTATGGTAAACAGACA 59.183 38.462 6.84 0.00 36.71 3.41
2105 2355 7.042335 AGCTGTGTATTCTATGGTAAACAGAC 58.958 38.462 6.84 0.16 36.71 3.51
2106 2356 7.124298 AGAGCTGTGTATTCTATGGTAAACAGA 59.876 37.037 0.00 0.00 36.71 3.41
2107 2357 7.223582 CAGAGCTGTGTATTCTATGGTAAACAG 59.776 40.741 1.91 0.00 37.45 3.16
2108 2358 7.041721 CAGAGCTGTGTATTCTATGGTAAACA 58.958 38.462 1.91 0.00 0.00 2.83
2109 2359 6.018669 GCAGAGCTGTGTATTCTATGGTAAAC 60.019 42.308 13.05 0.00 0.00 2.01
2110 2360 6.049149 GCAGAGCTGTGTATTCTATGGTAAA 58.951 40.000 13.05 0.00 0.00 2.01
2111 2361 5.128663 TGCAGAGCTGTGTATTCTATGGTAA 59.871 40.000 13.05 0.00 0.00 2.85
2112 2362 4.649218 TGCAGAGCTGTGTATTCTATGGTA 59.351 41.667 13.05 0.00 0.00 3.25
2113 2363 3.452264 TGCAGAGCTGTGTATTCTATGGT 59.548 43.478 13.05 0.00 0.00 3.55
2114 2364 4.056740 CTGCAGAGCTGTGTATTCTATGG 58.943 47.826 8.42 0.00 0.00 2.74
2115 2365 4.691175 ACTGCAGAGCTGTGTATTCTATG 58.309 43.478 23.35 0.00 39.15 2.23
2116 2366 4.648762 AGACTGCAGAGCTGTGTATTCTAT 59.351 41.667 23.35 0.00 40.59 1.98
2117 2367 4.019858 AGACTGCAGAGCTGTGTATTCTA 58.980 43.478 23.35 0.00 40.59 2.10
2118 2368 2.830923 AGACTGCAGAGCTGTGTATTCT 59.169 45.455 23.35 14.30 40.59 2.40
2119 2369 3.186119 GAGACTGCAGAGCTGTGTATTC 58.814 50.000 23.35 11.63 40.59 1.75
2120 2370 2.093764 GGAGACTGCAGAGCTGTGTATT 60.094 50.000 23.35 1.64 40.59 1.89
2121 2371 1.480137 GGAGACTGCAGAGCTGTGTAT 59.520 52.381 23.35 0.00 40.59 2.29
2122 2372 0.891373 GGAGACTGCAGAGCTGTGTA 59.109 55.000 23.35 7.14 40.59 2.90
2123 2373 1.117749 TGGAGACTGCAGAGCTGTGT 61.118 55.000 23.35 0.00 40.59 3.72
2124 2374 0.249676 ATGGAGACTGCAGAGCTGTG 59.750 55.000 23.35 6.48 40.59 3.66
2125 2375 0.982704 AATGGAGACTGCAGAGCTGT 59.017 50.000 23.35 0.00 43.03 4.40
2126 2376 1.207570 AGAATGGAGACTGCAGAGCTG 59.792 52.381 23.35 0.00 0.00 4.24
2127 2377 1.570803 AGAATGGAGACTGCAGAGCT 58.429 50.000 23.35 16.97 0.00 4.09
2128 2378 2.008329 CAAGAATGGAGACTGCAGAGC 58.992 52.381 23.35 12.03 0.00 4.09
2129 2379 3.331478 ACAAGAATGGAGACTGCAGAG 57.669 47.619 23.35 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.