Multiple sequence alignment - TraesCS3A01G353200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G353200 chr3A 100.000 7117 0 0 1 7117 601157413 601164529 0.000000e+00 13143.0
1 TraesCS3A01G353200 chr3A 83.531 589 58 17 5832 6387 601325780 601326362 1.370000e-141 514.0
2 TraesCS3A01G353200 chr3A 89.724 399 30 5 311 702 601134727 601135121 3.830000e-137 499.0
3 TraesCS3A01G353200 chr3A 88.739 222 10 4 5665 5886 601606212 601606006 2.550000e-64 257.0
4 TraesCS3A01G353200 chr3A 84.646 254 28 6 419 664 749277791 749278041 7.130000e-60 243.0
5 TraesCS3A01G353200 chr3A 94.079 152 8 1 5875 6026 601604024 601603874 5.550000e-56 230.0
6 TraesCS3A01G353200 chr3A 97.647 85 2 0 6051 6135 601603881 601603797 5.750000e-31 147.0
7 TraesCS3A01G353200 chr3D 95.887 5617 166 32 760 6348 459068009 459073588 0.000000e+00 9033.0
8 TraesCS3A01G353200 chr3D 83.612 598 47 27 5832 6387 459080147 459080735 1.370000e-141 514.0
9 TraesCS3A01G353200 chr3D 91.304 161 13 1 156 315 213157381 213157221 1.200000e-52 219.0
10 TraesCS3A01G353200 chr3D 87.879 165 16 4 2504 2668 463808831 463808671 2.620000e-44 191.0
11 TraesCS3A01G353200 chr3D 87.805 164 15 4 2505 2668 420815239 420815081 3.390000e-43 187.0
12 TraesCS3A01G353200 chr3D 88.235 136 15 1 2525 2660 354613679 354613813 2.050000e-35 161.0
13 TraesCS3A01G353200 chr3B 92.708 2208 97 23 311 2502 606164412 606166571 0.000000e+00 3127.0
14 TraesCS3A01G353200 chr3B 91.148 1446 83 24 3283 4705 606167169 606168592 0.000000e+00 1919.0
15 TraesCS3A01G353200 chr3B 92.773 1107 46 15 5207 6309 606169502 606170578 0.000000e+00 1570.0
16 TraesCS3A01G353200 chr3B 90.741 270 17 2 2975 3236 606166902 606167171 3.160000e-93 353.0
17 TraesCS3A01G353200 chr3B 88.755 249 16 2 5150 5398 606168944 606169180 1.940000e-75 294.0
18 TraesCS3A01G353200 chr3B 93.750 176 11 0 2736 2911 606166702 606166877 1.520000e-66 265.0
19 TraesCS3A01G353200 chr1D 94.545 550 30 0 6562 7111 443714061 443713512 0.000000e+00 850.0
20 TraesCS3A01G353200 chr1D 93.078 549 38 0 6562 7110 476807551 476808099 0.000000e+00 804.0
21 TraesCS3A01G353200 chr1D 96.622 148 5 0 1 148 376287661 376287514 5.510000e-61 246.0
22 TraesCS3A01G353200 chr1D 90.411 146 13 1 2523 2668 394864512 394864368 2.620000e-44 191.0
23 TraesCS3A01G353200 chr1D 87.234 141 17 1 2535 2675 459887813 459887952 7.390000e-35 159.0
24 TraesCS3A01G353200 chr1D 91.379 116 6 4 2503 2618 110779090 110778979 9.560000e-34 156.0
25 TraesCS3A01G353200 chr1D 89.524 105 8 3 2503 2607 459887737 459887838 5.790000e-26 130.0
26 TraesCS3A01G353200 chr1D 95.082 61 2 1 2542 2602 468370532 468370591 2.110000e-15 95.3
27 TraesCS3A01G353200 chr6D 93.478 552 35 1 6565 7116 404321816 404321266 0.000000e+00 819.0
28 TraesCS3A01G353200 chr6D 92.935 552 39 0 6565 7116 36549075 36548524 0.000000e+00 804.0
29 TraesCS3A01G353200 chr6D 93.078 549 38 0 6568 7116 139317946 139317398 0.000000e+00 804.0
30 TraesCS3A01G353200 chr6D 91.176 204 17 1 462 664 348087627 348087830 7.030000e-70 276.0
31 TraesCS3A01G353200 chr6D 91.875 160 13 0 156 315 386057863 386057704 2.580000e-54 224.0
32 TraesCS3A01G353200 chr6D 91.195 159 14 0 156 314 288432546 288432704 4.320000e-52 217.0
33 TraesCS3A01G353200 chr6D 86.585 164 16 6 2502 2665 193250138 193249981 7.340000e-40 176.0
34 TraesCS3A01G353200 chr6D 87.719 114 10 3 6424 6534 68083581 68083693 5.790000e-26 130.0
35 TraesCS3A01G353200 chr5D 93.761 545 33 1 6565 7109 395767352 395766809 0.000000e+00 817.0
36 TraesCS3A01G353200 chr5D 90.338 207 19 1 462 667 443651803 443651597 3.270000e-68 270.0
37 TraesCS3A01G353200 chr5D 91.824 159 12 1 156 314 177985627 177985784 3.340000e-53 220.0
38 TraesCS3A01G353200 chr5D 88.623 167 15 4 2502 2668 508112125 508111963 4.350000e-47 200.0
39 TraesCS3A01G353200 chr5D 81.776 214 34 4 443 651 456598440 456598227 2.640000e-39 174.0
40 TraesCS3A01G353200 chr5D 85.542 166 20 4 2503 2668 559427022 559427183 3.410000e-38 171.0
41 TraesCS3A01G353200 chr5D 97.561 41 1 0 4860 4900 334425734 334425774 3.560000e-08 71.3
42 TraesCS3A01G353200 chr5A 93.153 555 38 0 6562 7116 587425765 587426319 0.000000e+00 815.0
43 TraesCS3A01G353200 chr5A 93.273 550 37 0 6562 7111 425561926 425562475 0.000000e+00 811.0
44 TraesCS3A01G353200 chr7D 93.297 552 34 1 6565 7116 191544754 191544206 0.000000e+00 811.0
45 TraesCS3A01G353200 chr7D 95.395 152 6 1 1 151 46562356 46562507 2.570000e-59 241.0
46 TraesCS3A01G353200 chr7D 91.195 159 14 0 157 315 270700204 270700362 4.320000e-52 217.0
47 TraesCS3A01G353200 chr7D 93.197 147 10 0 166 312 557416026 557415880 4.320000e-52 217.0
48 TraesCS3A01G353200 chr7D 91.096 146 12 1 2523 2668 263946321 263946177 5.630000e-46 196.0
49 TraesCS3A01G353200 chr7D 87.805 164 14 5 2502 2665 409459118 409459275 3.390000e-43 187.0
50 TraesCS3A01G353200 chr5B 90.338 207 19 1 462 667 446430676 446430470 3.270000e-68 270.0
51 TraesCS3A01G353200 chr5B 90.291 206 19 1 463 667 314297440 314297235 1.180000e-67 268.0
52 TraesCS3A01G353200 chr5B 90.955 199 17 1 462 659 447183265 447183463 4.230000e-67 267.0
53 TraesCS3A01G353200 chr7B 90.594 202 18 1 462 662 322488684 322488483 4.230000e-67 267.0
54 TraesCS3A01G353200 chr7B 88.793 116 9 3 6422 6534 228264759 228264645 9.630000e-29 139.0
55 TraesCS3A01G353200 chr4D 90.196 204 19 1 462 664 145579534 145579737 1.520000e-66 265.0
56 TraesCS3A01G353200 chr4D 95.946 148 6 0 1 148 456269632 456269779 2.570000e-59 241.0
57 TraesCS3A01G353200 chr4D 89.820 167 13 4 2503 2668 122200049 122199886 2.010000e-50 211.0
58 TraesCS3A01G353200 chr4D 92.920 113 5 3 2504 2616 478247856 478247965 2.050000e-35 161.0
59 TraesCS3A01G353200 chrUn 96.622 148 5 0 1 148 100333856 100333709 5.510000e-61 246.0
60 TraesCS3A01G353200 chr2D 96.026 151 6 0 1 151 547284199 547284049 5.510000e-61 246.0
61 TraesCS3A01G353200 chr2D 96.644 149 4 1 1 148 627833262 627833114 5.510000e-61 246.0
62 TraesCS3A01G353200 chr2D 96.575 146 5 0 1 146 642841302 642841447 7.130000e-60 243.0
63 TraesCS3A01G353200 chr2D 91.228 171 11 4 2498 2668 628591985 628591819 5.550000e-56 230.0
64 TraesCS3A01G353200 chr2D 91.195 159 14 0 156 314 316662305 316662147 4.320000e-52 217.0
65 TraesCS3A01G353200 chr2D 89.017 173 14 4 2503 2672 634056350 634056180 7.230000e-50 209.0
66 TraesCS3A01G353200 chr2D 88.820 161 13 4 2507 2665 345853167 345853324 7.290000e-45 193.0
67 TraesCS3A01G353200 chr1B 96.622 148 4 1 1 148 170566638 170566784 1.980000e-60 244.0
68 TraesCS3A01G353200 chr1B 85.897 78 8 3 6424 6500 336774181 336774106 5.920000e-11 80.5
69 TraesCS3A01G353200 chr2B 95.946 148 6 0 1 148 695927612 695927759 2.570000e-59 241.0
70 TraesCS3A01G353200 chr2B 87.069 116 11 3 6422 6534 600816961 600817075 2.080000e-25 128.0
71 TraesCS3A01G353200 chr4B 83.740 246 34 4 422 667 611856151 611855912 2.000000e-55 228.0
72 TraesCS3A01G353200 chr2A 91.720 157 11 1 156 312 665831448 665831602 4.320000e-52 217.0
73 TraesCS3A01G353200 chr4A 89.286 168 16 2 156 323 81280835 81281000 7.230000e-50 209.0
74 TraesCS3A01G353200 chr4A 90.184 163 12 4 2503 2665 448515060 448515218 7.230000e-50 209.0
75 TraesCS3A01G353200 chr7A 89.024 164 14 4 2502 2665 469986369 469986528 4.350000e-47 200.0
76 TraesCS3A01G353200 chr6A 89.855 138 13 1 2523 2660 57656736 57656872 7.340000e-40 176.0
77 TraesCS3A01G353200 chr6A 89.655 116 8 3 6422 6534 73489239 73489353 2.070000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G353200 chr3A 601157413 601164529 7116 False 13143.000000 13143 100.000000 1 7117 1 chr3A.!!$F2 7116
1 TraesCS3A01G353200 chr3A 601325780 601326362 582 False 514.000000 514 83.531000 5832 6387 1 chr3A.!!$F3 555
2 TraesCS3A01G353200 chr3A 601603797 601606212 2415 True 211.333333 257 93.488333 5665 6135 3 chr3A.!!$R1 470
3 TraesCS3A01G353200 chr3D 459068009 459073588 5579 False 9033.000000 9033 95.887000 760 6348 1 chr3D.!!$F2 5588
4 TraesCS3A01G353200 chr3D 459080147 459080735 588 False 514.000000 514 83.612000 5832 6387 1 chr3D.!!$F3 555
5 TraesCS3A01G353200 chr3B 606164412 606170578 6166 False 1254.666667 3127 91.645833 311 6309 6 chr3B.!!$F1 5998
6 TraesCS3A01G353200 chr1D 443713512 443714061 549 True 850.000000 850 94.545000 6562 7111 1 chr1D.!!$R4 549
7 TraesCS3A01G353200 chr1D 476807551 476808099 548 False 804.000000 804 93.078000 6562 7110 1 chr1D.!!$F2 548
8 TraesCS3A01G353200 chr6D 404321266 404321816 550 True 819.000000 819 93.478000 6565 7116 1 chr6D.!!$R5 551
9 TraesCS3A01G353200 chr6D 36548524 36549075 551 True 804.000000 804 92.935000 6565 7116 1 chr6D.!!$R1 551
10 TraesCS3A01G353200 chr6D 139317398 139317946 548 True 804.000000 804 93.078000 6568 7116 1 chr6D.!!$R2 548
11 TraesCS3A01G353200 chr5D 395766809 395767352 543 True 817.000000 817 93.761000 6565 7109 1 chr5D.!!$R1 544
12 TraesCS3A01G353200 chr5A 587425765 587426319 554 False 815.000000 815 93.153000 6562 7116 1 chr5A.!!$F2 554
13 TraesCS3A01G353200 chr5A 425561926 425562475 549 False 811.000000 811 93.273000 6562 7111 1 chr5A.!!$F1 549
14 TraesCS3A01G353200 chr7D 191544206 191544754 548 True 811.000000 811 93.297000 6565 7116 1 chr7D.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.036448 TTCCGTCAATTAACCGGGCA 59.964 50.000 6.32 0.0 41.98 5.36 F
103 104 0.625849 ACCGGGCAATTCTCATTCCT 59.374 50.000 6.32 0.0 0.00 3.36 F
104 105 1.005924 ACCGGGCAATTCTCATTCCTT 59.994 47.619 6.32 0.0 0.00 3.36 F
1308 1332 1.035923 CCGATTGCTCTGCTCCTCTA 58.964 55.000 0.00 0.0 0.00 2.43 F
2690 2726 0.461693 CCTTGCTAGAGCCAGTGAGC 60.462 60.000 0.00 0.0 41.18 4.26 F
3243 3374 0.535102 CTGGTCCGCCCCATTGATAC 60.535 60.000 0.00 0.0 33.00 2.24 F
4241 4380 0.846427 TTCAGTTGAGGGAGGGCCAT 60.846 55.000 6.18 0.0 35.15 4.40 F
4525 4679 1.134075 CTTGCGTGCACATGCTCTC 59.866 57.895 18.64 0.0 43.48 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1251 1274 0.252057 TCGATCTGAGTGTTCCCCCA 60.252 55.000 0.00 0.00 0.00 4.96 R
1328 1356 0.464193 CATCCGCATCCACATCCACA 60.464 55.000 0.00 0.00 0.00 4.17 R
1400 1428 2.668280 GCTGACGGCGACCTTGAAC 61.668 63.158 16.62 0.00 0.00 3.18 R
2696 2732 0.104304 AAATAGACTAGGTGCGCCCG 59.896 55.000 14.07 7.21 38.74 6.13 R
4537 4691 0.471617 CAAGGGGACAGGATAGGCTG 59.528 60.000 0.00 0.00 0.00 4.85 R
5178 5345 0.321564 TCACCTCACGGGAATTGCTG 60.322 55.000 3.94 3.94 38.76 4.41 R
5179 5346 0.620556 ATCACCTCACGGGAATTGCT 59.379 50.000 0.00 0.00 38.76 3.91 R
6414 9131 0.243365 ACGCCCGAATACGTTGTGTA 59.757 50.000 0.00 0.00 40.09 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.068881 CCATGTCGGTGGTCAGGT 58.931 61.111 0.00 0.00 34.46 4.00
18 19 1.374947 CCATGTCGGTGGTCAGGTT 59.625 57.895 0.00 0.00 34.46 3.50
19 20 0.955428 CCATGTCGGTGGTCAGGTTG 60.955 60.000 0.00 0.00 34.46 3.77
20 21 0.955428 CATGTCGGTGGTCAGGTTGG 60.955 60.000 0.00 0.00 0.00 3.77
21 22 2.668550 GTCGGTGGTCAGGTTGGC 60.669 66.667 0.00 0.00 0.00 4.52
22 23 3.948719 TCGGTGGTCAGGTTGGCC 61.949 66.667 0.00 0.00 43.98 5.36
28 29 4.265056 GTCAGGTTGGCCGGTGGT 62.265 66.667 1.90 0.00 40.50 4.16
29 30 2.527123 TCAGGTTGGCCGGTGGTA 60.527 61.111 1.90 0.00 40.50 3.25
30 31 2.359478 CAGGTTGGCCGGTGGTAC 60.359 66.667 1.90 0.00 40.50 3.34
31 32 3.643554 AGGTTGGCCGGTGGTACC 61.644 66.667 4.43 4.43 40.50 3.34
32 33 4.728110 GGTTGGCCGGTGGTACCC 62.728 72.222 10.07 0.11 33.75 3.69
33 34 3.956314 GTTGGCCGGTGGTACCCA 61.956 66.667 10.07 0.00 33.75 4.51
34 35 2.936584 TTGGCCGGTGGTACCCAT 60.937 61.111 10.07 0.00 35.28 4.00
35 36 3.275214 TTGGCCGGTGGTACCCATG 62.275 63.158 10.07 0.00 35.28 3.66
36 37 3.723922 GGCCGGTGGTACCCATGT 61.724 66.667 10.07 0.00 35.28 3.21
37 38 2.353573 GCCGGTGGTACCCATGTT 59.646 61.111 10.07 0.00 35.28 2.71
38 39 1.603306 GCCGGTGGTACCCATGTTA 59.397 57.895 10.07 0.00 35.28 2.41
39 40 0.181824 GCCGGTGGTACCCATGTTAT 59.818 55.000 10.07 0.00 35.28 1.89
40 41 1.417145 GCCGGTGGTACCCATGTTATA 59.583 52.381 10.07 0.00 35.28 0.98
41 42 2.039348 GCCGGTGGTACCCATGTTATAT 59.961 50.000 10.07 0.00 35.28 0.86
42 43 3.670625 CCGGTGGTACCCATGTTATATG 58.329 50.000 10.07 0.00 35.28 1.78
43 44 3.558321 CCGGTGGTACCCATGTTATATGG 60.558 52.174 10.07 0.66 35.28 2.74
55 56 7.214467 CCATGTTATATGGGTTGGATTGTAC 57.786 40.000 0.00 0.00 35.58 2.90
56 57 6.208599 CCATGTTATATGGGTTGGATTGTACC 59.791 42.308 0.00 0.00 35.58 3.34
57 58 5.369833 TGTTATATGGGTTGGATTGTACCG 58.630 41.667 0.00 0.00 35.19 4.02
58 59 3.502123 ATATGGGTTGGATTGTACCGG 57.498 47.619 0.00 0.00 35.19 5.28
59 60 0.996583 ATGGGTTGGATTGTACCGGT 59.003 50.000 13.98 13.98 35.19 5.28
60 61 0.772384 TGGGTTGGATTGTACCGGTT 59.228 50.000 15.04 0.00 35.19 4.44
61 62 1.145325 TGGGTTGGATTGTACCGGTTT 59.855 47.619 15.04 0.00 35.19 3.27
62 63 2.241160 GGGTTGGATTGTACCGGTTTT 58.759 47.619 15.04 0.00 35.19 2.43
63 64 3.181436 TGGGTTGGATTGTACCGGTTTTA 60.181 43.478 15.04 0.00 35.19 1.52
64 65 3.441222 GGGTTGGATTGTACCGGTTTTAG 59.559 47.826 15.04 0.00 35.19 1.85
65 66 3.119743 GGTTGGATTGTACCGGTTTTAGC 60.120 47.826 15.04 0.01 0.00 3.09
66 67 2.713877 TGGATTGTACCGGTTTTAGCC 58.286 47.619 15.04 11.24 0.00 3.93
67 68 2.306512 TGGATTGTACCGGTTTTAGCCT 59.693 45.455 15.04 0.00 0.00 4.58
68 69 2.681344 GGATTGTACCGGTTTTAGCCTG 59.319 50.000 15.04 0.00 0.00 4.85
69 70 2.188062 TTGTACCGGTTTTAGCCTGG 57.812 50.000 15.04 0.00 0.00 4.45
70 71 1.058284 TGTACCGGTTTTAGCCTGGT 58.942 50.000 15.04 0.00 38.37 4.00
71 72 1.420891 TGTACCGGTTTTAGCCTGGTT 59.579 47.619 15.04 0.00 36.96 3.67
72 73 2.158638 TGTACCGGTTTTAGCCTGGTTT 60.159 45.455 15.04 0.00 36.96 3.27
73 74 2.076207 ACCGGTTTTAGCCTGGTTTT 57.924 45.000 0.00 0.00 33.77 2.43
74 75 1.958579 ACCGGTTTTAGCCTGGTTTTC 59.041 47.619 0.00 0.00 33.77 2.29
75 76 1.271379 CCGGTTTTAGCCTGGTTTTCC 59.729 52.381 0.00 0.00 41.14 3.13
76 77 1.068816 CGGTTTTAGCCTGGTTTTCCG 60.069 52.381 0.00 0.00 44.36 4.30
77 78 1.958579 GGTTTTAGCCTGGTTTTCCGT 59.041 47.619 0.00 0.00 44.36 4.69
78 79 2.030540 GGTTTTAGCCTGGTTTTCCGTC 60.031 50.000 0.00 0.00 44.36 4.79
79 80 2.619646 GTTTTAGCCTGGTTTTCCGTCA 59.380 45.455 0.00 0.00 44.36 4.35
80 81 2.642154 TTAGCCTGGTTTTCCGTCAA 57.358 45.000 0.00 0.00 44.36 3.18
81 82 2.871096 TAGCCTGGTTTTCCGTCAAT 57.129 45.000 0.00 0.00 44.36 2.57
82 83 1.995376 AGCCTGGTTTTCCGTCAATT 58.005 45.000 0.00 0.00 44.36 2.32
83 84 3.149005 AGCCTGGTTTTCCGTCAATTA 57.851 42.857 0.00 0.00 44.36 1.40
84 85 3.492337 AGCCTGGTTTTCCGTCAATTAA 58.508 40.909 0.00 0.00 44.36 1.40
85 86 3.254903 AGCCTGGTTTTCCGTCAATTAAC 59.745 43.478 0.00 0.00 44.36 2.01
86 87 3.613193 GCCTGGTTTTCCGTCAATTAACC 60.613 47.826 0.00 0.00 44.36 2.85
87 88 3.365565 CCTGGTTTTCCGTCAATTAACCG 60.366 47.826 0.00 0.00 44.36 4.44
88 89 2.553172 TGGTTTTCCGTCAATTAACCGG 59.447 45.455 0.00 0.00 44.36 5.28
89 90 2.095110 GGTTTTCCGTCAATTAACCGGG 60.095 50.000 6.32 0.00 41.98 5.73
90 91 1.166989 TTTCCGTCAATTAACCGGGC 58.833 50.000 6.32 0.00 41.98 6.13
91 92 0.036448 TTCCGTCAATTAACCGGGCA 59.964 50.000 6.32 0.00 41.98 5.36
92 93 0.036448 TCCGTCAATTAACCGGGCAA 59.964 50.000 6.32 0.00 41.98 4.52
93 94 1.099689 CCGTCAATTAACCGGGCAAT 58.900 50.000 6.32 0.96 38.09 3.56
94 95 1.474879 CCGTCAATTAACCGGGCAATT 59.525 47.619 6.32 8.10 38.09 2.32
95 96 2.478879 CCGTCAATTAACCGGGCAATTC 60.479 50.000 6.32 0.00 38.09 2.17
96 97 2.422127 CGTCAATTAACCGGGCAATTCT 59.578 45.455 6.32 0.00 0.00 2.40
97 98 3.486875 CGTCAATTAACCGGGCAATTCTC 60.487 47.826 6.32 5.39 0.00 2.87
98 99 3.442273 GTCAATTAACCGGGCAATTCTCA 59.558 43.478 6.32 0.00 0.00 3.27
99 100 4.097892 GTCAATTAACCGGGCAATTCTCAT 59.902 41.667 6.32 0.00 0.00 2.90
100 101 4.709397 TCAATTAACCGGGCAATTCTCATT 59.291 37.500 6.32 0.00 0.00 2.57
101 102 4.918810 ATTAACCGGGCAATTCTCATTC 57.081 40.909 6.32 0.00 0.00 2.67
102 103 1.474330 AACCGGGCAATTCTCATTCC 58.526 50.000 6.32 0.00 0.00 3.01
103 104 0.625849 ACCGGGCAATTCTCATTCCT 59.374 50.000 6.32 0.00 0.00 3.36
104 105 1.005924 ACCGGGCAATTCTCATTCCTT 59.994 47.619 6.32 0.00 0.00 3.36
105 106 1.678101 CCGGGCAATTCTCATTCCTTC 59.322 52.381 0.00 0.00 0.00 3.46
106 107 2.648059 CGGGCAATTCTCATTCCTTCT 58.352 47.619 0.00 0.00 0.00 2.85
107 108 3.019564 CGGGCAATTCTCATTCCTTCTT 58.980 45.455 0.00 0.00 0.00 2.52
108 109 4.199310 CGGGCAATTCTCATTCCTTCTTA 58.801 43.478 0.00 0.00 0.00 2.10
109 110 4.640201 CGGGCAATTCTCATTCCTTCTTAA 59.360 41.667 0.00 0.00 0.00 1.85
110 111 5.300286 CGGGCAATTCTCATTCCTTCTTAAT 59.700 40.000 0.00 0.00 0.00 1.40
111 112 6.514048 CGGGCAATTCTCATTCCTTCTTAATC 60.514 42.308 0.00 0.00 0.00 1.75
112 113 6.322201 GGGCAATTCTCATTCCTTCTTAATCA 59.678 38.462 0.00 0.00 0.00 2.57
113 114 7.147846 GGGCAATTCTCATTCCTTCTTAATCAA 60.148 37.037 0.00 0.00 0.00 2.57
114 115 8.419442 GGCAATTCTCATTCCTTCTTAATCAAT 58.581 33.333 0.00 0.00 0.00 2.57
115 116 9.245962 GCAATTCTCATTCCTTCTTAATCAATG 57.754 33.333 0.00 0.00 0.00 2.82
123 124 8.823818 CATTCCTTCTTAATCAATGAAAATGGC 58.176 33.333 0.00 0.00 0.00 4.40
124 125 7.479352 TCCTTCTTAATCAATGAAAATGGCA 57.521 32.000 0.00 0.00 0.00 4.92
125 126 7.905265 TCCTTCTTAATCAATGAAAATGGCAA 58.095 30.769 0.00 0.00 0.00 4.52
126 127 8.036575 TCCTTCTTAATCAATGAAAATGGCAAG 58.963 33.333 0.00 0.00 0.00 4.01
127 128 7.820872 CCTTCTTAATCAATGAAAATGGCAAGT 59.179 33.333 0.00 0.00 0.00 3.16
128 129 8.761575 TTCTTAATCAATGAAAATGGCAAGTC 57.238 30.769 0.00 0.00 0.00 3.01
129 130 8.125978 TCTTAATCAATGAAAATGGCAAGTCT 57.874 30.769 0.00 0.00 0.00 3.24
130 131 8.587608 TCTTAATCAATGAAAATGGCAAGTCTT 58.412 29.630 0.00 0.00 0.00 3.01
131 132 9.211485 CTTAATCAATGAAAATGGCAAGTCTTT 57.789 29.630 0.00 0.00 0.00 2.52
132 133 9.558396 TTAATCAATGAAAATGGCAAGTCTTTT 57.442 25.926 0.00 0.00 0.00 2.27
133 134 6.847956 TCAATGAAAATGGCAAGTCTTTTG 57.152 33.333 1.54 4.22 0.00 2.44
134 135 5.236911 TCAATGAAAATGGCAAGTCTTTTGC 59.763 36.000 1.54 3.39 44.22 3.68
141 142 2.492019 GCAAGTCTTTTGCCTCGTTT 57.508 45.000 0.54 0.00 39.38 3.60
142 143 2.385315 GCAAGTCTTTTGCCTCGTTTC 58.615 47.619 0.54 0.00 39.38 2.78
143 144 2.223479 GCAAGTCTTTTGCCTCGTTTCA 60.223 45.455 0.54 0.00 39.38 2.69
144 145 3.733684 GCAAGTCTTTTGCCTCGTTTCAA 60.734 43.478 0.54 0.00 39.38 2.69
145 146 4.420168 CAAGTCTTTTGCCTCGTTTCAAA 58.580 39.130 0.00 0.00 0.00 2.69
146 147 4.712122 AGTCTTTTGCCTCGTTTCAAAA 57.288 36.364 9.63 9.63 39.13 2.44
147 148 5.066968 AGTCTTTTGCCTCGTTTCAAAAA 57.933 34.783 10.66 0.00 40.36 1.94
148 149 4.862574 AGTCTTTTGCCTCGTTTCAAAAAC 59.137 37.500 10.66 10.92 40.36 2.43
149 150 4.623595 GTCTTTTGCCTCGTTTCAAAAACA 59.376 37.500 3.72 2.04 40.36 2.83
150 151 5.290885 GTCTTTTGCCTCGTTTCAAAAACAT 59.709 36.000 3.72 0.00 40.36 2.71
151 152 5.872070 TCTTTTGCCTCGTTTCAAAAACATT 59.128 32.000 3.72 0.00 40.36 2.71
152 153 5.710613 TTTGCCTCGTTTCAAAAACATTC 57.289 34.783 3.72 0.00 30.19 2.67
153 154 4.377839 TGCCTCGTTTCAAAAACATTCA 57.622 36.364 3.72 0.00 0.00 2.57
154 155 4.109050 TGCCTCGTTTCAAAAACATTCAC 58.891 39.130 3.72 0.00 0.00 3.18
155 156 4.109050 GCCTCGTTTCAAAAACATTCACA 58.891 39.130 3.72 0.00 0.00 3.58
156 157 4.564769 GCCTCGTTTCAAAAACATTCACAA 59.435 37.500 3.72 0.00 0.00 3.33
157 158 5.062809 GCCTCGTTTCAAAAACATTCACAAA 59.937 36.000 3.72 0.00 0.00 2.83
158 159 6.238076 GCCTCGTTTCAAAAACATTCACAAAT 60.238 34.615 3.72 0.00 0.00 2.32
159 160 7.336975 CCTCGTTTCAAAAACATTCACAAATC 58.663 34.615 3.72 0.00 0.00 2.17
160 161 6.917059 TCGTTTCAAAAACATTCACAAATCG 58.083 32.000 3.72 0.00 0.00 3.34
161 162 6.747739 TCGTTTCAAAAACATTCACAAATCGA 59.252 30.769 3.72 0.00 0.00 3.59
162 163 7.433719 TCGTTTCAAAAACATTCACAAATCGAT 59.566 29.630 0.00 0.00 0.00 3.59
163 164 8.686418 CGTTTCAAAAACATTCACAAATCGATA 58.314 29.630 0.00 0.00 0.00 2.92
166 167 9.905171 TTCAAAAACATTCACAAATCGATATCA 57.095 25.926 0.00 0.00 0.00 2.15
174 175 9.486857 CATTCACAAATCGATATCATTAGATGC 57.513 33.333 0.00 0.00 35.67 3.91
175 176 7.281991 TCACAAATCGATATCATTAGATGCG 57.718 36.000 0.00 0.00 35.67 4.73
176 177 6.868339 TCACAAATCGATATCATTAGATGCGT 59.132 34.615 0.00 0.00 35.90 5.24
177 178 7.062255 TCACAAATCGATATCATTAGATGCGTC 59.938 37.037 0.00 0.00 35.90 5.19
178 179 6.868339 ACAAATCGATATCATTAGATGCGTCA 59.132 34.615 8.99 0.00 35.90 4.35
179 180 7.547019 ACAAATCGATATCATTAGATGCGTCAT 59.453 33.333 8.99 0.00 35.90 3.06
180 181 7.460751 AATCGATATCATTAGATGCGTCATG 57.539 36.000 8.99 4.33 35.90 3.07
181 182 6.194796 TCGATATCATTAGATGCGTCATGA 57.805 37.500 8.99 9.84 35.90 3.07
182 183 6.030228 TCGATATCATTAGATGCGTCATGAC 58.970 40.000 16.21 16.21 35.90 3.06
183 184 6.032717 CGATATCATTAGATGCGTCATGACT 58.967 40.000 22.95 4.97 35.67 3.41
184 185 6.529477 CGATATCATTAGATGCGTCATGACTT 59.471 38.462 22.95 8.27 35.67 3.01
185 186 7.253585 CGATATCATTAGATGCGTCATGACTTC 60.254 40.741 22.95 15.99 35.67 3.01
186 187 5.009854 TCATTAGATGCGTCATGACTTCA 57.990 39.130 22.95 19.37 0.00 3.02
187 188 5.418676 TCATTAGATGCGTCATGACTTCAA 58.581 37.500 22.95 13.06 0.00 2.69
188 189 6.051074 TCATTAGATGCGTCATGACTTCAAT 58.949 36.000 22.95 14.69 0.00 2.57
189 190 6.539826 TCATTAGATGCGTCATGACTTCAATT 59.460 34.615 22.95 14.08 0.00 2.32
190 191 6.741992 TTAGATGCGTCATGACTTCAATTT 57.258 33.333 22.95 12.13 0.00 1.82
191 192 5.633830 AGATGCGTCATGACTTCAATTTT 57.366 34.783 22.95 6.43 0.00 1.82
192 193 5.634896 AGATGCGTCATGACTTCAATTTTC 58.365 37.500 22.95 13.76 0.00 2.29
193 194 4.827304 TGCGTCATGACTTCAATTTTCA 57.173 36.364 22.95 4.84 0.00 2.69
194 195 5.375417 TGCGTCATGACTTCAATTTTCAT 57.625 34.783 22.95 0.00 0.00 2.57
195 196 6.493449 TGCGTCATGACTTCAATTTTCATA 57.507 33.333 22.95 0.00 0.00 2.15
196 197 7.087409 TGCGTCATGACTTCAATTTTCATAT 57.913 32.000 22.95 0.00 0.00 1.78
197 198 8.207521 TGCGTCATGACTTCAATTTTCATATA 57.792 30.769 22.95 0.00 0.00 0.86
198 199 8.337532 TGCGTCATGACTTCAATTTTCATATAG 58.662 33.333 22.95 3.02 0.00 1.31
199 200 8.338259 GCGTCATGACTTCAATTTTCATATAGT 58.662 33.333 22.95 0.00 0.00 2.12
222 223 8.848474 AGTACAACTTTAGCATTGTAGATGTT 57.152 30.769 0.00 0.00 40.90 2.71
223 224 8.721478 AGTACAACTTTAGCATTGTAGATGTTG 58.279 33.333 0.00 0.00 40.90 3.33
224 225 7.744087 ACAACTTTAGCATTGTAGATGTTGA 57.256 32.000 15.30 0.00 37.27 3.18
225 226 8.340618 ACAACTTTAGCATTGTAGATGTTGAT 57.659 30.769 15.30 0.00 37.27 2.57
226 227 9.448438 ACAACTTTAGCATTGTAGATGTTGATA 57.552 29.630 15.30 0.00 37.27 2.15
234 235 8.959548 AGCATTGTAGATGTTGATATTTGTTCA 58.040 29.630 0.00 0.00 0.00 3.18
235 236 9.740239 GCATTGTAGATGTTGATATTTGTTCAT 57.260 29.630 0.00 0.00 0.00 2.57
279 280 5.674933 GAAGTTTGACTTCGGACAATTCT 57.325 39.130 5.20 0.00 44.22 2.40
280 281 6.061231 GAAGTTTGACTTCGGACAATTCTT 57.939 37.500 5.20 0.00 44.22 2.52
281 282 7.186021 GAAGTTTGACTTCGGACAATTCTTA 57.814 36.000 5.20 0.00 44.22 2.10
282 283 7.745620 AAGTTTGACTTCGGACAATTCTTAT 57.254 32.000 0.00 0.00 31.77 1.73
283 284 8.842358 AAGTTTGACTTCGGACAATTCTTATA 57.158 30.769 0.00 0.00 31.77 0.98
284 285 9.449719 AAGTTTGACTTCGGACAATTCTTATAT 57.550 29.630 0.00 0.00 31.77 0.86
285 286 8.883731 AGTTTGACTTCGGACAATTCTTATATG 58.116 33.333 0.00 0.00 30.77 1.78
286 287 6.844696 TGACTTCGGACAATTCTTATATGC 57.155 37.500 0.00 0.00 0.00 3.14
287 288 6.345298 TGACTTCGGACAATTCTTATATGCA 58.655 36.000 0.00 0.00 0.00 3.96
288 289 6.479990 TGACTTCGGACAATTCTTATATGCAG 59.520 38.462 0.00 0.00 0.00 4.41
289 290 6.582636 ACTTCGGACAATTCTTATATGCAGA 58.417 36.000 0.00 0.00 0.00 4.26
290 291 6.703607 ACTTCGGACAATTCTTATATGCAGAG 59.296 38.462 0.00 0.00 0.00 3.35
291 292 6.161855 TCGGACAATTCTTATATGCAGAGT 57.838 37.500 0.00 0.00 0.00 3.24
292 293 7.284919 TCGGACAATTCTTATATGCAGAGTA 57.715 36.000 0.00 0.00 0.00 2.59
293 294 7.722363 TCGGACAATTCTTATATGCAGAGTAA 58.278 34.615 0.00 0.00 0.00 2.24
294 295 8.201464 TCGGACAATTCTTATATGCAGAGTAAA 58.799 33.333 0.00 0.00 0.00 2.01
295 296 8.826710 CGGACAATTCTTATATGCAGAGTAAAA 58.173 33.333 0.00 0.00 0.00 1.52
301 302 8.732746 TTCTTATATGCAGAGTAAAAAGGACC 57.267 34.615 0.00 0.00 0.00 4.46
302 303 6.984474 TCTTATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
303 304 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
304 305 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
305 306 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
321 322 3.299340 CGGAGGAAGTATTATGGGACG 57.701 52.381 0.00 0.00 0.00 4.79
406 409 2.527497 TCTCCCAGCATGCATGAAAAA 58.473 42.857 30.64 9.63 31.97 1.94
577 580 9.069078 GGATTCATCATTGCATATATTTTCACG 57.931 33.333 0.00 0.00 0.00 4.35
714 717 2.116238 ACATATTGTCACGGGGTAGCT 58.884 47.619 0.00 0.00 0.00 3.32
715 718 2.504175 ACATATTGTCACGGGGTAGCTT 59.496 45.455 0.00 0.00 0.00 3.74
750 753 1.208535 CTGTCACGGGGTAGCCAATTA 59.791 52.381 14.06 0.00 0.00 1.40
751 754 1.841277 TGTCACGGGGTAGCCAATTAT 59.159 47.619 14.06 0.00 0.00 1.28
752 755 2.240160 TGTCACGGGGTAGCCAATTATT 59.760 45.455 14.06 0.00 0.00 1.40
753 756 3.284617 GTCACGGGGTAGCCAATTATTT 58.715 45.455 14.06 0.00 0.00 1.40
754 757 3.314357 GTCACGGGGTAGCCAATTATTTC 59.686 47.826 14.06 0.00 0.00 2.17
755 758 2.621526 CACGGGGTAGCCAATTATTTCC 59.378 50.000 14.06 0.00 0.00 3.13
756 759 2.512476 ACGGGGTAGCCAATTATTTCCT 59.488 45.455 14.06 0.00 0.00 3.36
757 760 3.717913 ACGGGGTAGCCAATTATTTCCTA 59.282 43.478 14.06 0.00 0.00 2.94
797 800 1.078426 GTGCGTGATTAGGCCCTGT 60.078 57.895 0.00 0.00 36.89 4.00
806 809 1.989706 TTAGGCCCTGTTTCAACACC 58.010 50.000 0.00 0.00 34.70 4.16
808 811 2.561037 GGCCCTGTTTCAACACCGG 61.561 63.158 0.00 0.00 34.70 5.28
819 822 1.979308 TCAACACCGGGATTCCTTACA 59.021 47.619 6.32 0.00 0.00 2.41
832 835 1.140852 TCCTTACAAGATCATGGCCCG 59.859 52.381 0.00 0.00 0.00 6.13
1000 1023 4.179599 CTCCCCTCCCCTCCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
1037 1060 4.506255 GCCCGAATCCCACCCCAG 62.506 72.222 0.00 0.00 0.00 4.45
1063 1086 1.652012 CGAGCTAGAAGGAGGAGCG 59.348 63.158 0.00 0.00 41.23 5.03
1281 1305 4.158579 ACACTCAGATCGAAGCTGTCAATA 59.841 41.667 15.55 0.00 34.98 1.90
1298 1322 3.070018 CAATACCCTCATCCGATTGCTC 58.930 50.000 0.00 0.00 0.00 4.26
1308 1332 1.035923 CCGATTGCTCTGCTCCTCTA 58.964 55.000 0.00 0.00 0.00 2.43
1316 1340 3.838317 TGCTCTGCTCCTCTAACCTTTTA 59.162 43.478 0.00 0.00 0.00 1.52
1319 1343 5.883115 GCTCTGCTCCTCTAACCTTTTATTT 59.117 40.000 0.00 0.00 0.00 1.40
1400 1428 2.794282 CGAGAAGGAGCTCAACGATCTG 60.794 54.545 17.19 3.21 34.56 2.90
1453 1481 0.988678 GTTGGTATGGCCTCCTCCCT 60.989 60.000 3.32 0.00 38.35 4.20
1541 1569 8.805175 TGGATATGAAGTTGTTGTGAATTGATT 58.195 29.630 0.00 0.00 0.00 2.57
1575 1604 3.130516 CGGTAGTATGGAAGTGCTTCTGA 59.869 47.826 11.18 0.45 39.45 3.27
1588 1617 6.491714 AGTGCTTCTGATAATACTGGTGAT 57.508 37.500 0.00 0.00 0.00 3.06
1702 1731 5.927689 TGAAATTGCAATGTTTCATCAGGAC 59.072 36.000 19.44 0.00 38.88 3.85
1934 1970 6.038271 ACAAGCGTGATGGAGGTAAATAAATC 59.962 38.462 6.65 0.00 0.00 2.17
2518 2554 1.707427 AGCCCATGGATTATGAGTCCC 59.293 52.381 15.22 0.00 39.21 4.46
2522 2558 2.040813 CCATGGATTATGAGTCCCAGGG 59.959 54.545 5.56 0.00 43.04 4.45
2606 2642 4.103365 AGTCTATGAGTCGCAACTTCAG 57.897 45.455 0.00 0.00 35.28 3.02
2607 2643 3.508012 AGTCTATGAGTCGCAACTTCAGT 59.492 43.478 0.00 0.00 35.28 3.41
2653 2689 9.547753 TTATGCTTAAGTCTATGATTCTCAACC 57.452 33.333 4.02 0.00 0.00 3.77
2665 2701 4.020218 TGATTCTCAACCTCGGAATGACTT 60.020 41.667 0.00 0.00 30.98 3.01
2685 2721 3.334583 TGTAAACCTTGCTAGAGCCAG 57.665 47.619 0.00 0.00 41.18 4.85
2686 2722 2.637872 TGTAAACCTTGCTAGAGCCAGT 59.362 45.455 0.00 0.00 41.18 4.00
2687 2723 2.191128 AAACCTTGCTAGAGCCAGTG 57.809 50.000 0.00 0.00 41.18 3.66
2688 2724 1.352083 AACCTTGCTAGAGCCAGTGA 58.648 50.000 0.00 0.00 41.18 3.41
2689 2725 0.901124 ACCTTGCTAGAGCCAGTGAG 59.099 55.000 0.00 0.00 41.18 3.51
2690 2726 0.461693 CCTTGCTAGAGCCAGTGAGC 60.462 60.000 0.00 0.00 41.18 4.26
2691 2727 0.461693 CTTGCTAGAGCCAGTGAGCC 60.462 60.000 0.00 0.00 41.18 4.70
2692 2728 1.194121 TTGCTAGAGCCAGTGAGCCA 61.194 55.000 0.00 0.00 41.18 4.75
2696 2732 1.407258 CTAGAGCCAGTGAGCCACTAC 59.593 57.143 7.41 4.17 43.43 2.73
2901 3024 7.327761 ACGTAGTAACTAAACACACTTGCTATG 59.672 37.037 0.00 0.00 41.94 2.23
2961 3084 6.787085 AGCGGATTTACTCACTTATATTGC 57.213 37.500 0.00 0.00 0.00 3.56
3033 3157 5.827568 ACATTTTTCATCGTGTTTGCATC 57.172 34.783 0.00 0.00 0.00 3.91
3034 3158 5.288015 ACATTTTTCATCGTGTTTGCATCA 58.712 33.333 0.00 0.00 0.00 3.07
3125 3256 7.928307 ATAAACTTGCATTGTCTCACTATGT 57.072 32.000 0.00 0.00 34.56 2.29
3243 3374 0.535102 CTGGTCCGCCCCATTGATAC 60.535 60.000 0.00 0.00 33.00 2.24
3575 3706 3.515602 AAATCCTTCCTGTCTGCAACT 57.484 42.857 0.00 0.00 0.00 3.16
3652 3784 7.116948 CGTGACATTCTCTACTTCTTGTTCATT 59.883 37.037 0.00 0.00 0.00 2.57
3857 3989 6.214005 AGCCCTTGTGGTACTTAATGTAACTA 59.786 38.462 0.00 0.00 39.50 2.24
3966 4098 1.040646 AGACGTGAAGAGCCACAAGA 58.959 50.000 0.00 0.00 36.89 3.02
4021 4153 5.813080 ACTAAATCGGCTGTTTATTCACC 57.187 39.130 0.00 0.00 0.00 4.02
4105 4237 4.760204 TGGCCTTTAGAACAAGAAAGCTAC 59.240 41.667 3.32 0.00 32.37 3.58
4175 4313 1.065199 TCATAGTTTCTGCTGCCCCAG 60.065 52.381 0.00 0.00 34.12 4.45
4193 4331 5.627135 CCCCAGAAACTTCCAAAGTAGTTA 58.373 41.667 0.00 0.00 41.91 2.24
4204 4343 5.061179 TCCAAAGTAGTTACCTTGAGTTGC 58.939 41.667 2.90 0.00 31.02 4.17
4241 4380 0.846427 TTCAGTTGAGGGAGGGCCAT 60.846 55.000 6.18 0.00 35.15 4.40
4323 4464 9.143631 CAAATTTTCTTGGCTACTCCTTTTATG 57.856 33.333 0.00 0.00 35.26 1.90
4352 4493 6.859112 TGATCTGACTAGTTTAGCCTTTCT 57.141 37.500 0.00 0.00 0.00 2.52
4465 4618 7.288158 GTGGTATCAACTAGGACTCCTCTAATT 59.712 40.741 0.00 0.00 34.61 1.40
4473 4626 8.325477 ACTAGGACTCCTCTAATTTAGCAATT 57.675 34.615 0.00 0.00 34.42 2.32
4509 4663 1.821088 AGACTCCAACAGGTTCCCTT 58.179 50.000 0.00 0.00 0.00 3.95
4525 4679 1.134075 CTTGCGTGCACATGCTCTC 59.866 57.895 18.64 0.00 43.48 3.20
4537 4691 5.639506 TGCACATGCTCTCTTTAACTACTTC 59.360 40.000 5.31 0.00 42.66 3.01
4540 4694 5.872070 ACATGCTCTCTTTAACTACTTCAGC 59.128 40.000 0.00 0.00 0.00 4.26
4642 4796 7.472334 AAAGAAGAAATATGTGAAGCACCAT 57.528 32.000 0.00 0.00 32.73 3.55
4828 4984 1.937191 CCCATAAGGTTTGCCCAGTT 58.063 50.000 0.00 0.00 34.66 3.16
4858 5014 6.153680 TGAGGTGGTGTTATTCTTTTGTTGTT 59.846 34.615 0.00 0.00 0.00 2.83
4986 5153 3.077359 GGGGCTCCATGAAGAAATATCG 58.923 50.000 0.00 0.00 0.00 2.92
5178 5345 3.877559 TCCATCAACATCATGTCTGGTC 58.122 45.455 11.73 0.00 0.00 4.02
5179 5346 3.263937 TCCATCAACATCATGTCTGGTCA 59.736 43.478 11.73 0.00 0.00 4.02
5359 6037 9.194972 TCATCTTGCATTTAATTTGGTACCATA 57.805 29.630 17.17 12.04 0.00 2.74
5360 6038 9.985730 CATCTTGCATTTAATTTGGTACCATAT 57.014 29.630 17.17 14.09 0.00 1.78
5481 6159 9.614792 ATCTAGTGGTAAGAATTGGAATTGTAC 57.385 33.333 0.00 0.00 0.00 2.90
5482 6160 8.598916 TCTAGTGGTAAGAATTGGAATTGTACA 58.401 33.333 0.00 0.00 0.00 2.90
5504 6182 4.374843 TGTGTTATGGATTCAATGCTGC 57.625 40.909 0.00 0.00 0.00 5.25
5522 6200 7.733402 ATGCTGCAAAGTTTTTGTTATTCAT 57.267 28.000 6.36 0.00 0.00 2.57
5724 6406 0.842635 CCTCTAATGGCAAGGAGGCT 59.157 55.000 16.68 0.00 44.55 4.58
5808 6490 0.106708 AACTCGAAGCAAGCCTGTCA 59.893 50.000 0.00 0.00 0.00 3.58
5829 6511 5.858581 GTCAAGAACTTCCATTCAAATTCGG 59.141 40.000 0.00 0.00 0.00 4.30
5924 8603 4.690122 TCGGCCTACTTGCTTTATTAGAC 58.310 43.478 0.00 0.00 0.00 2.59
5999 8682 3.009363 TCATCATCTGTTTTGAGGGAGCA 59.991 43.478 0.00 0.00 0.00 4.26
6032 8715 2.905075 TGATGCCCAGTGTTAAGATCG 58.095 47.619 0.00 0.00 0.00 3.69
6125 8809 2.350484 GCACCAACGTTTTTCTAGCCTC 60.350 50.000 0.00 0.00 0.00 4.70
6140 8824 2.629051 AGCCTCGTGCAAAACCTATAC 58.371 47.619 0.00 0.00 44.83 1.47
6198 8897 4.398358 GGCCCAGGATTGTAGTCTTTTTAC 59.602 45.833 0.00 0.00 0.00 2.01
6255 8958 1.855213 CTTGGGGTGTGTGTGCATCG 61.855 60.000 0.00 0.00 0.00 3.84
6310 9015 8.626093 TTTGTAAATTCCATTTTGCTTTTTGC 57.374 26.923 0.00 0.00 36.60 3.68
6315 9020 8.774890 AAATTCCATTTTGCTTTTTGCTTTTT 57.225 23.077 0.00 0.00 43.37 1.94
6387 9104 1.134965 CGAGAACCAGGGCTTACTCAG 60.135 57.143 0.00 0.00 0.00 3.35
6388 9105 2.180276 GAGAACCAGGGCTTACTCAGA 58.820 52.381 0.00 0.00 0.00 3.27
6389 9106 2.769095 GAGAACCAGGGCTTACTCAGAT 59.231 50.000 0.00 0.00 0.00 2.90
6390 9107 2.503356 AGAACCAGGGCTTACTCAGATG 59.497 50.000 0.00 0.00 0.00 2.90
6391 9108 1.958288 ACCAGGGCTTACTCAGATGT 58.042 50.000 0.00 0.00 0.00 3.06
6392 9109 1.834263 ACCAGGGCTTACTCAGATGTC 59.166 52.381 0.00 0.00 0.00 3.06
6393 9110 1.833630 CCAGGGCTTACTCAGATGTCA 59.166 52.381 0.00 0.00 0.00 3.58
6394 9111 2.158986 CCAGGGCTTACTCAGATGTCAG 60.159 54.545 0.00 0.00 0.00 3.51
6395 9112 2.762887 CAGGGCTTACTCAGATGTCAGA 59.237 50.000 0.00 0.00 0.00 3.27
6396 9113 3.196469 CAGGGCTTACTCAGATGTCAGAA 59.804 47.826 0.00 0.00 0.00 3.02
6397 9114 4.036518 AGGGCTTACTCAGATGTCAGAAT 58.963 43.478 0.00 0.00 0.00 2.40
6398 9115 4.125703 GGGCTTACTCAGATGTCAGAATG 58.874 47.826 0.00 0.00 37.54 2.67
6399 9116 3.559242 GGCTTACTCAGATGTCAGAATGC 59.441 47.826 0.00 0.00 34.76 3.56
6400 9117 4.186926 GCTTACTCAGATGTCAGAATGCA 58.813 43.478 0.00 0.00 34.76 3.96
6401 9118 4.633126 GCTTACTCAGATGTCAGAATGCAA 59.367 41.667 0.00 0.00 34.76 4.08
6402 9119 5.447010 GCTTACTCAGATGTCAGAATGCAAC 60.447 44.000 0.00 0.00 34.76 4.17
6403 9120 2.998670 ACTCAGATGTCAGAATGCAACG 59.001 45.455 0.00 0.00 34.76 4.10
6404 9121 2.998670 CTCAGATGTCAGAATGCAACGT 59.001 45.455 0.00 0.00 34.76 3.99
6405 9122 2.738314 TCAGATGTCAGAATGCAACGTG 59.262 45.455 0.00 0.00 34.76 4.49
6406 9123 2.481568 CAGATGTCAGAATGCAACGTGT 59.518 45.455 0.00 0.00 34.76 4.49
6407 9124 2.481568 AGATGTCAGAATGCAACGTGTG 59.518 45.455 0.00 0.00 34.76 3.82
6408 9125 1.662517 TGTCAGAATGCAACGTGTGT 58.337 45.000 0.00 0.00 34.76 3.72
6409 9126 1.597195 TGTCAGAATGCAACGTGTGTC 59.403 47.619 0.00 0.00 34.76 3.67
6410 9127 1.597195 GTCAGAATGCAACGTGTGTCA 59.403 47.619 0.00 0.00 34.76 3.58
6411 9128 1.866601 TCAGAATGCAACGTGTGTCAG 59.133 47.619 0.00 0.00 34.76 3.51
6412 9129 0.588252 AGAATGCAACGTGTGTCAGC 59.412 50.000 0.00 0.00 0.00 4.26
6413 9130 0.307453 GAATGCAACGTGTGTCAGCA 59.693 50.000 0.00 0.00 41.37 4.41
6414 9131 0.953727 AATGCAACGTGTGTCAGCAT 59.046 45.000 0.00 0.00 45.81 3.79
6415 9132 1.807139 ATGCAACGTGTGTCAGCATA 58.193 45.000 0.00 0.00 43.60 3.14
6416 9133 0.865111 TGCAACGTGTGTCAGCATAC 59.135 50.000 0.00 0.00 35.09 2.39
6417 9134 0.865111 GCAACGTGTGTCAGCATACA 59.135 50.000 0.00 0.00 36.66 2.29
6418 9135 6.602865 AATGCAACGTGTGTCAGCATACAC 62.603 45.833 13.10 13.10 44.21 2.90
6428 9145 3.610677 TGTCAGCATACACAACGTATTCG 59.389 43.478 0.00 0.00 38.85 3.34
6429 9146 3.000078 GTCAGCATACACAACGTATTCGG 60.000 47.826 0.00 0.00 38.85 4.30
6430 9147 2.284150 CAGCATACACAACGTATTCGGG 59.716 50.000 0.00 0.00 38.85 5.14
6431 9148 1.004292 GCATACACAACGTATTCGGGC 60.004 52.381 0.00 0.00 38.85 6.13
6432 9149 1.256895 CATACACAACGTATTCGGGCG 59.743 52.381 0.00 0.00 38.85 6.13
6433 9150 0.243365 TACACAACGTATTCGGGCGT 59.757 50.000 0.00 0.00 43.64 5.68
6434 9151 1.286354 ACACAACGTATTCGGGCGTG 61.286 55.000 0.00 8.24 41.42 5.34
6435 9152 1.005867 ACAACGTATTCGGGCGTGT 60.006 52.632 0.00 0.00 41.42 4.49
6436 9153 0.600782 ACAACGTATTCGGGCGTGTT 60.601 50.000 0.00 0.00 41.42 3.32
6437 9154 0.513820 CAACGTATTCGGGCGTGTTT 59.486 50.000 0.00 0.00 41.42 2.83
6438 9155 0.792031 AACGTATTCGGGCGTGTTTC 59.208 50.000 0.00 0.00 41.42 2.78
6439 9156 1.342473 CGTATTCGGGCGTGTTTCG 59.658 57.895 0.00 0.00 43.12 3.46
6440 9157 1.711500 GTATTCGGGCGTGTTTCGG 59.289 57.895 0.00 0.00 40.26 4.30
6447 9164 4.626225 GCGTGTTTCGGCACAAAT 57.374 50.000 6.52 0.00 39.19 2.32
6448 9165 2.880091 GCGTGTTTCGGCACAAATT 58.120 47.368 6.52 0.00 39.19 1.82
6449 9166 0.502275 GCGTGTTTCGGCACAAATTG 59.498 50.000 0.00 0.00 39.19 2.32
6450 9167 1.862008 GCGTGTTTCGGCACAAATTGA 60.862 47.619 0.00 0.00 39.19 2.57
6451 9168 2.455032 CGTGTTTCGGCACAAATTGAA 58.545 42.857 0.00 0.00 39.19 2.69
6452 9169 2.215363 CGTGTTTCGGCACAAATTGAAC 59.785 45.455 0.00 0.00 39.19 3.18
6453 9170 3.182967 GTGTTTCGGCACAAATTGAACA 58.817 40.909 0.00 0.00 39.07 3.18
6454 9171 3.801594 GTGTTTCGGCACAAATTGAACAT 59.198 39.130 0.00 0.00 39.07 2.71
6455 9172 4.979197 GTGTTTCGGCACAAATTGAACATA 59.021 37.500 0.00 0.00 39.07 2.29
6456 9173 5.460419 GTGTTTCGGCACAAATTGAACATAA 59.540 36.000 0.00 0.00 39.07 1.90
6457 9174 5.689514 TGTTTCGGCACAAATTGAACATAAG 59.310 36.000 0.00 0.00 0.00 1.73
6458 9175 3.832276 TCGGCACAAATTGAACATAAGC 58.168 40.909 0.00 0.00 0.00 3.09
6459 9176 3.505680 TCGGCACAAATTGAACATAAGCT 59.494 39.130 0.00 0.00 0.00 3.74
6460 9177 4.697828 TCGGCACAAATTGAACATAAGCTA 59.302 37.500 0.00 0.00 0.00 3.32
6461 9178 5.356751 TCGGCACAAATTGAACATAAGCTAT 59.643 36.000 0.00 0.00 0.00 2.97
6462 9179 6.035843 CGGCACAAATTGAACATAAGCTATT 58.964 36.000 0.00 0.00 0.00 1.73
6463 9180 6.531240 CGGCACAAATTGAACATAAGCTATTT 59.469 34.615 0.00 0.00 0.00 1.40
6464 9181 7.063308 CGGCACAAATTGAACATAAGCTATTTT 59.937 33.333 0.00 0.00 0.00 1.82
6465 9182 8.720562 GGCACAAATTGAACATAAGCTATTTTT 58.279 29.630 0.00 0.00 0.00 1.94
6649 9366 1.299541 CTAAATGCCCGCTCGACATT 58.700 50.000 5.20 5.20 35.59 2.71
6700 9417 1.072331 GTGGGAGTTCTTGCCTCTTGA 59.928 52.381 0.00 0.00 38.31 3.02
6769 9486 4.119556 TGCCATCTGCTAGGTAGTATCT 57.880 45.455 0.00 0.00 42.00 1.98
6833 9550 5.003804 GGAGAATGACCTTCAACAAGCTTA 58.996 41.667 0.00 0.00 36.24 3.09
6888 9605 4.202441 GTCATTGTGAGTTCCTGGCATAT 58.798 43.478 0.00 0.00 0.00 1.78
6931 9648 1.192146 AGGTCGTGTGTGGCCACTAT 61.192 55.000 34.75 10.18 42.34 2.12
6955 9672 2.663520 TACCACACTGCAACCGCG 60.664 61.111 0.00 0.00 42.97 6.46
6983 9700 1.063717 CCTTTGTACATCCCCTGCCAT 60.064 52.381 0.00 0.00 0.00 4.40
7098 9815 2.875672 GCAGTGTCTTCAGCATTGGGTA 60.876 50.000 0.00 0.00 0.00 3.69
7102 9819 4.009675 GTGTCTTCAGCATTGGGTAATCA 58.990 43.478 0.00 0.00 0.00 2.57
7111 9828 7.342581 TCAGCATTGGGTAATCACAAGTATTA 58.657 34.615 0.00 0.00 40.49 0.98
7116 9833 6.052405 TGGGTAATCACAAGTATTACGGTT 57.948 37.500 0.00 0.00 39.61 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.955428 CAACCTGACCACCGACATGG 60.955 60.000 0.00 0.00 46.10 3.66
1 2 0.955428 CCAACCTGACCACCGACATG 60.955 60.000 0.00 0.00 0.00 3.21
2 3 1.374947 CCAACCTGACCACCGACAT 59.625 57.895 0.00 0.00 0.00 3.06
3 4 2.825982 CCAACCTGACCACCGACA 59.174 61.111 0.00 0.00 0.00 4.35
4 5 2.668550 GCCAACCTGACCACCGAC 60.669 66.667 0.00 0.00 0.00 4.79
5 6 3.948719 GGCCAACCTGACCACCGA 61.949 66.667 0.00 0.00 0.00 4.69
8 9 4.265056 ACCGGCCAACCTGACCAC 62.265 66.667 0.00 0.00 0.00 4.16
9 10 4.263572 CACCGGCCAACCTGACCA 62.264 66.667 0.00 0.00 0.00 4.02
11 12 2.886134 TACCACCGGCCAACCTGAC 61.886 63.158 0.00 0.00 0.00 3.51
12 13 2.527123 TACCACCGGCCAACCTGA 60.527 61.111 0.00 0.00 0.00 3.86
13 14 2.359478 GTACCACCGGCCAACCTG 60.359 66.667 0.00 0.00 0.00 4.00
14 15 3.643554 GGTACCACCGGCCAACCT 61.644 66.667 7.15 0.00 0.00 3.50
31 32 6.208599 GGTACAATCCAACCCATATAACATGG 59.791 42.308 0.00 0.00 38.88 3.66
32 33 6.072728 CGGTACAATCCAACCCATATAACATG 60.073 42.308 0.00 0.00 31.68 3.21
33 34 6.001460 CGGTACAATCCAACCCATATAACAT 58.999 40.000 0.00 0.00 31.68 2.71
34 35 5.369833 CGGTACAATCCAACCCATATAACA 58.630 41.667 0.00 0.00 31.68 2.41
35 36 4.758165 CCGGTACAATCCAACCCATATAAC 59.242 45.833 0.00 0.00 31.68 1.89
36 37 4.412858 ACCGGTACAATCCAACCCATATAA 59.587 41.667 4.49 0.00 31.68 0.98
37 38 3.975312 ACCGGTACAATCCAACCCATATA 59.025 43.478 4.49 0.00 31.68 0.86
38 39 2.781174 ACCGGTACAATCCAACCCATAT 59.219 45.455 4.49 0.00 31.68 1.78
39 40 2.198336 ACCGGTACAATCCAACCCATA 58.802 47.619 4.49 0.00 31.68 2.74
40 41 0.996583 ACCGGTACAATCCAACCCAT 59.003 50.000 4.49 0.00 31.68 4.00
41 42 0.772384 AACCGGTACAATCCAACCCA 59.228 50.000 8.00 0.00 31.68 4.51
42 43 1.913778 AAACCGGTACAATCCAACCC 58.086 50.000 8.00 0.00 31.68 4.11
43 44 3.119743 GCTAAAACCGGTACAATCCAACC 60.120 47.826 8.00 0.00 0.00 3.77
44 45 3.119743 GGCTAAAACCGGTACAATCCAAC 60.120 47.826 8.00 0.00 0.00 3.77
45 46 3.083293 GGCTAAAACCGGTACAATCCAA 58.917 45.455 8.00 0.00 0.00 3.53
46 47 2.306512 AGGCTAAAACCGGTACAATCCA 59.693 45.455 8.00 0.00 33.69 3.41
47 48 2.681344 CAGGCTAAAACCGGTACAATCC 59.319 50.000 8.00 7.30 33.69 3.01
48 49 2.681344 CCAGGCTAAAACCGGTACAATC 59.319 50.000 8.00 0.00 33.69 2.67
49 50 2.040679 ACCAGGCTAAAACCGGTACAAT 59.959 45.455 8.00 0.00 35.66 2.71
50 51 1.420891 ACCAGGCTAAAACCGGTACAA 59.579 47.619 8.00 0.00 35.66 2.41
51 52 1.058284 ACCAGGCTAAAACCGGTACA 58.942 50.000 8.00 0.00 35.66 2.90
52 53 2.189594 AACCAGGCTAAAACCGGTAC 57.810 50.000 8.00 0.00 36.16 3.34
53 54 2.955342 AAACCAGGCTAAAACCGGTA 57.045 45.000 8.00 0.00 36.16 4.02
54 55 1.958579 GAAAACCAGGCTAAAACCGGT 59.041 47.619 0.00 0.00 37.95 5.28
55 56 1.271379 GGAAAACCAGGCTAAAACCGG 59.729 52.381 0.00 0.00 33.69 5.28
56 57 1.068816 CGGAAAACCAGGCTAAAACCG 60.069 52.381 0.00 0.00 33.69 4.44
57 58 1.958579 ACGGAAAACCAGGCTAAAACC 59.041 47.619 0.00 0.00 0.00 3.27
58 59 2.619646 TGACGGAAAACCAGGCTAAAAC 59.380 45.455 0.00 0.00 0.00 2.43
59 60 2.933573 TGACGGAAAACCAGGCTAAAA 58.066 42.857 0.00 0.00 0.00 1.52
60 61 2.642154 TGACGGAAAACCAGGCTAAA 57.358 45.000 0.00 0.00 0.00 1.85
61 62 2.642154 TTGACGGAAAACCAGGCTAA 57.358 45.000 0.00 0.00 0.00 3.09
62 63 2.871096 ATTGACGGAAAACCAGGCTA 57.129 45.000 0.00 0.00 0.00 3.93
63 64 1.995376 AATTGACGGAAAACCAGGCT 58.005 45.000 0.00 0.00 0.00 4.58
64 65 3.571571 GTTAATTGACGGAAAACCAGGC 58.428 45.455 0.00 0.00 0.00 4.85
65 66 3.365565 CGGTTAATTGACGGAAAACCAGG 60.366 47.826 2.16 0.00 39.66 4.45
66 67 3.817238 CGGTTAATTGACGGAAAACCAG 58.183 45.455 2.16 0.00 39.66 4.00
67 68 3.900388 CGGTTAATTGACGGAAAACCA 57.100 42.857 2.16 0.00 39.66 3.67
74 75 1.099689 ATTGCCCGGTTAATTGACGG 58.900 50.000 0.00 9.49 46.79 4.79
75 76 2.422127 AGAATTGCCCGGTTAATTGACG 59.578 45.455 15.42 0.00 0.00 4.35
76 77 3.442273 TGAGAATTGCCCGGTTAATTGAC 59.558 43.478 15.42 10.39 0.00 3.18
77 78 3.691575 TGAGAATTGCCCGGTTAATTGA 58.308 40.909 15.42 0.71 0.00 2.57
78 79 4.654091 ATGAGAATTGCCCGGTTAATTG 57.346 40.909 15.42 0.00 0.00 2.32
79 80 4.099419 GGAATGAGAATTGCCCGGTTAATT 59.901 41.667 11.61 11.61 0.00 1.40
80 81 3.636764 GGAATGAGAATTGCCCGGTTAAT 59.363 43.478 0.00 0.00 0.00 1.40
81 82 3.020984 GGAATGAGAATTGCCCGGTTAA 58.979 45.455 0.00 0.00 0.00 2.01
82 83 2.241176 AGGAATGAGAATTGCCCGGTTA 59.759 45.455 0.00 0.00 0.00 2.85
83 84 1.005924 AGGAATGAGAATTGCCCGGTT 59.994 47.619 0.00 0.00 0.00 4.44
84 85 0.625849 AGGAATGAGAATTGCCCGGT 59.374 50.000 0.00 0.00 0.00 5.28
85 86 1.678101 GAAGGAATGAGAATTGCCCGG 59.322 52.381 0.00 0.00 0.00 5.73
86 87 2.648059 AGAAGGAATGAGAATTGCCCG 58.352 47.619 0.00 0.00 0.00 6.13
87 88 6.322201 TGATTAAGAAGGAATGAGAATTGCCC 59.678 38.462 0.00 0.00 0.00 5.36
88 89 7.338800 TGATTAAGAAGGAATGAGAATTGCC 57.661 36.000 0.00 0.00 0.00 4.52
89 90 9.245962 CATTGATTAAGAAGGAATGAGAATTGC 57.754 33.333 0.00 0.00 0.00 3.56
97 98 8.823818 GCCATTTTCATTGATTAAGAAGGAATG 58.176 33.333 0.00 0.00 0.00 2.67
98 99 8.542080 TGCCATTTTCATTGATTAAGAAGGAAT 58.458 29.630 0.00 0.00 0.00 3.01
99 100 7.905265 TGCCATTTTCATTGATTAAGAAGGAA 58.095 30.769 0.00 0.00 0.00 3.36
100 101 7.479352 TGCCATTTTCATTGATTAAGAAGGA 57.521 32.000 0.00 0.00 0.00 3.36
101 102 7.820872 ACTTGCCATTTTCATTGATTAAGAAGG 59.179 33.333 0.00 0.00 0.00 3.46
102 103 8.767478 ACTTGCCATTTTCATTGATTAAGAAG 57.233 30.769 0.00 0.00 0.00 2.85
103 104 8.587608 AGACTTGCCATTTTCATTGATTAAGAA 58.412 29.630 0.00 0.00 0.00 2.52
104 105 8.125978 AGACTTGCCATTTTCATTGATTAAGA 57.874 30.769 0.00 0.00 0.00 2.10
105 106 8.767478 AAGACTTGCCATTTTCATTGATTAAG 57.233 30.769 0.00 0.00 0.00 1.85
106 107 9.558396 AAAAGACTTGCCATTTTCATTGATTAA 57.442 25.926 0.00 0.00 0.00 1.40
107 108 8.991026 CAAAAGACTTGCCATTTTCATTGATTA 58.009 29.630 0.00 0.00 0.00 1.75
108 109 7.520937 GCAAAAGACTTGCCATTTTCATTGATT 60.521 33.333 0.00 0.00 39.38 2.57
109 110 6.072893 GCAAAAGACTTGCCATTTTCATTGAT 60.073 34.615 0.00 0.00 39.38 2.57
110 111 5.236911 GCAAAAGACTTGCCATTTTCATTGA 59.763 36.000 0.00 0.00 39.38 2.57
111 112 5.445845 GCAAAAGACTTGCCATTTTCATTG 58.554 37.500 0.00 0.00 39.38 2.82
112 113 5.678132 GCAAAAGACTTGCCATTTTCATT 57.322 34.783 0.00 0.00 39.38 2.57
122 123 2.223479 TGAAACGAGGCAAAAGACTTGC 60.223 45.455 0.78 0.78 44.22 4.01
123 124 3.691049 TGAAACGAGGCAAAAGACTTG 57.309 42.857 0.00 0.00 0.00 3.16
124 125 4.712122 TTTGAAACGAGGCAAAAGACTT 57.288 36.364 0.00 0.00 31.64 3.01
125 126 4.712122 TTTTGAAACGAGGCAAAAGACT 57.288 36.364 0.00 0.00 38.60 3.24
126 127 4.623595 TGTTTTTGAAACGAGGCAAAAGAC 59.376 37.500 11.51 12.29 42.71 3.01
127 128 4.810790 TGTTTTTGAAACGAGGCAAAAGA 58.189 34.783 11.51 4.09 42.71 2.52
128 129 5.717038 ATGTTTTTGAAACGAGGCAAAAG 57.283 34.783 11.51 0.00 42.71 2.27
129 130 5.639506 TGAATGTTTTTGAAACGAGGCAAAA 59.360 32.000 0.00 0.00 40.89 2.44
130 131 5.062809 GTGAATGTTTTTGAAACGAGGCAAA 59.937 36.000 0.00 0.00 32.63 3.68
131 132 4.564769 GTGAATGTTTTTGAAACGAGGCAA 59.435 37.500 0.00 0.00 0.00 4.52
132 133 4.109050 GTGAATGTTTTTGAAACGAGGCA 58.891 39.130 0.00 0.00 0.00 4.75
133 134 4.109050 TGTGAATGTTTTTGAAACGAGGC 58.891 39.130 0.00 0.00 0.00 4.70
134 135 6.639671 TTTGTGAATGTTTTTGAAACGAGG 57.360 33.333 0.00 0.00 0.00 4.63
135 136 7.044380 TCGATTTGTGAATGTTTTTGAAACGAG 60.044 33.333 0.00 0.00 0.00 4.18
136 137 6.747739 TCGATTTGTGAATGTTTTTGAAACGA 59.252 30.769 0.00 0.00 0.00 3.85
137 138 6.917059 TCGATTTGTGAATGTTTTTGAAACG 58.083 32.000 0.00 0.00 0.00 3.60
140 141 9.905171 TGATATCGATTTGTGAATGTTTTTGAA 57.095 25.926 1.71 0.00 0.00 2.69
148 149 9.486857 GCATCTAATGATATCGATTTGTGAATG 57.513 33.333 1.71 0.58 0.00 2.67
149 150 8.385858 CGCATCTAATGATATCGATTTGTGAAT 58.614 33.333 1.71 0.00 33.02 2.57
150 151 7.384932 ACGCATCTAATGATATCGATTTGTGAA 59.615 33.333 1.71 0.00 34.35 3.18
151 152 6.868339 ACGCATCTAATGATATCGATTTGTGA 59.132 34.615 1.71 0.00 34.35 3.58
152 153 7.053710 ACGCATCTAATGATATCGATTTGTG 57.946 36.000 1.71 4.78 34.35 3.33
153 154 6.868339 TGACGCATCTAATGATATCGATTTGT 59.132 34.615 1.71 0.00 34.35 2.83
154 155 7.281991 TGACGCATCTAATGATATCGATTTG 57.718 36.000 1.71 1.64 34.35 2.32
155 156 7.761249 TCATGACGCATCTAATGATATCGATTT 59.239 33.333 1.71 0.00 34.35 2.17
156 157 7.221645 GTCATGACGCATCTAATGATATCGATT 59.778 37.037 10.69 2.50 34.35 3.34
157 158 6.694844 GTCATGACGCATCTAATGATATCGAT 59.305 38.462 10.69 2.16 34.35 3.59
158 159 6.030228 GTCATGACGCATCTAATGATATCGA 58.970 40.000 10.69 0.00 34.35 3.59
159 160 6.032717 AGTCATGACGCATCTAATGATATCG 58.967 40.000 19.85 0.00 35.47 2.92
160 161 7.543520 TGAAGTCATGACGCATCTAATGATATC 59.456 37.037 19.85 0.00 36.20 1.63
161 162 7.381323 TGAAGTCATGACGCATCTAATGATAT 58.619 34.615 19.85 0.00 36.20 1.63
162 163 6.748132 TGAAGTCATGACGCATCTAATGATA 58.252 36.000 19.85 0.80 36.20 2.15
163 164 5.604565 TGAAGTCATGACGCATCTAATGAT 58.395 37.500 19.85 0.00 36.20 2.45
164 165 5.009854 TGAAGTCATGACGCATCTAATGA 57.990 39.130 19.85 2.05 36.20 2.57
165 166 5.723492 TTGAAGTCATGACGCATCTAATG 57.277 39.130 19.85 0.00 36.20 1.90
166 167 6.932356 AATTGAAGTCATGACGCATCTAAT 57.068 33.333 19.85 15.96 36.20 1.73
167 168 6.741992 AAATTGAAGTCATGACGCATCTAA 57.258 33.333 19.85 14.77 36.20 2.10
168 169 6.371271 TGAAAATTGAAGTCATGACGCATCTA 59.629 34.615 19.85 15.60 36.20 1.98
169 170 5.181811 TGAAAATTGAAGTCATGACGCATCT 59.818 36.000 19.85 9.94 36.20 2.90
170 171 5.393124 TGAAAATTGAAGTCATGACGCATC 58.607 37.500 19.85 18.32 36.20 3.91
171 172 5.375417 TGAAAATTGAAGTCATGACGCAT 57.625 34.783 19.85 10.57 36.20 4.73
172 173 4.827304 TGAAAATTGAAGTCATGACGCA 57.173 36.364 19.85 18.26 36.20 5.24
173 174 8.338259 ACTATATGAAAATTGAAGTCATGACGC 58.662 33.333 19.85 15.99 34.01 5.19
196 197 9.938280 AACATCTACAATGCTAAAGTTGTACTA 57.062 29.630 0.00 0.00 39.18 1.82
197 198 8.721478 CAACATCTACAATGCTAAAGTTGTACT 58.279 33.333 0.00 0.00 39.18 2.73
198 199 8.717821 TCAACATCTACAATGCTAAAGTTGTAC 58.282 33.333 0.00 0.00 39.18 2.90
199 200 8.840833 TCAACATCTACAATGCTAAAGTTGTA 57.159 30.769 0.00 0.00 39.18 2.41
200 201 7.744087 TCAACATCTACAATGCTAAAGTTGT 57.256 32.000 0.00 0.00 41.16 3.32
208 209 8.959548 TGAACAAATATCAACATCTACAATGCT 58.040 29.630 0.00 0.00 0.00 3.79
209 210 9.740239 ATGAACAAATATCAACATCTACAATGC 57.260 29.630 0.00 0.00 0.00 3.56
258 259 7.745620 ATAAGAATTGTCCGAAGTCAAACTT 57.254 32.000 0.00 0.00 41.95 2.66
259 260 8.883731 CATATAAGAATTGTCCGAAGTCAAACT 58.116 33.333 0.00 0.00 0.00 2.66
260 261 7.640240 GCATATAAGAATTGTCCGAAGTCAAAC 59.360 37.037 0.00 0.00 0.00 2.93
261 262 7.335673 TGCATATAAGAATTGTCCGAAGTCAAA 59.664 33.333 0.00 0.00 0.00 2.69
262 263 6.821160 TGCATATAAGAATTGTCCGAAGTCAA 59.179 34.615 0.00 0.00 0.00 3.18
263 264 6.345298 TGCATATAAGAATTGTCCGAAGTCA 58.655 36.000 0.00 0.00 0.00 3.41
264 265 6.701841 TCTGCATATAAGAATTGTCCGAAGTC 59.298 38.462 0.00 0.00 0.00 3.01
265 266 6.582636 TCTGCATATAAGAATTGTCCGAAGT 58.417 36.000 0.00 0.00 0.00 3.01
266 267 6.703607 ACTCTGCATATAAGAATTGTCCGAAG 59.296 38.462 0.00 0.00 0.00 3.79
267 268 6.582636 ACTCTGCATATAAGAATTGTCCGAA 58.417 36.000 0.00 0.00 0.00 4.30
268 269 6.161855 ACTCTGCATATAAGAATTGTCCGA 57.838 37.500 0.00 0.00 0.00 4.55
269 270 7.946655 TTACTCTGCATATAAGAATTGTCCG 57.053 36.000 0.00 0.00 0.00 4.79
275 276 9.343539 GGTCCTTTTTACTCTGCATATAAGAAT 57.656 33.333 0.00 0.00 0.00 2.40
276 277 7.494625 CGGTCCTTTTTACTCTGCATATAAGAA 59.505 37.037 0.00 0.00 0.00 2.52
277 278 6.984474 CGGTCCTTTTTACTCTGCATATAAGA 59.016 38.462 0.00 0.00 0.00 2.10
278 279 6.202954 CCGGTCCTTTTTACTCTGCATATAAG 59.797 42.308 0.00 0.00 0.00 1.73
279 280 6.053005 CCGGTCCTTTTTACTCTGCATATAA 58.947 40.000 0.00 0.00 0.00 0.98
280 281 5.364446 TCCGGTCCTTTTTACTCTGCATATA 59.636 40.000 0.00 0.00 0.00 0.86
281 282 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
282 283 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
283 284 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
284 285 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
285 286 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
286 287 2.565834 TCCTCCGGTCCTTTTTACTCTG 59.434 50.000 0.00 0.00 0.00 3.35
287 288 2.898662 TCCTCCGGTCCTTTTTACTCT 58.101 47.619 0.00 0.00 0.00 3.24
288 289 3.007723 ACTTCCTCCGGTCCTTTTTACTC 59.992 47.826 0.00 0.00 0.00 2.59
289 290 2.977580 ACTTCCTCCGGTCCTTTTTACT 59.022 45.455 0.00 0.00 0.00 2.24
290 291 3.413846 ACTTCCTCCGGTCCTTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
291 292 5.767277 AATACTTCCTCCGGTCCTTTTTA 57.233 39.130 0.00 0.00 0.00 1.52
292 293 4.652679 AATACTTCCTCCGGTCCTTTTT 57.347 40.909 0.00 0.00 0.00 1.94
293 294 5.397559 CCATAATACTTCCTCCGGTCCTTTT 60.398 44.000 0.00 0.00 0.00 2.27
294 295 4.102681 CCATAATACTTCCTCCGGTCCTTT 59.897 45.833 0.00 0.00 0.00 3.11
295 296 3.646637 CCATAATACTTCCTCCGGTCCTT 59.353 47.826 0.00 0.00 0.00 3.36
296 297 3.240302 CCATAATACTTCCTCCGGTCCT 58.760 50.000 0.00 0.00 0.00 3.85
297 298 2.302157 CCCATAATACTTCCTCCGGTCC 59.698 54.545 0.00 0.00 0.00 4.46
298 299 3.006644 GTCCCATAATACTTCCTCCGGTC 59.993 52.174 0.00 0.00 0.00 4.79
299 300 2.970640 GTCCCATAATACTTCCTCCGGT 59.029 50.000 0.00 0.00 0.00 5.28
300 301 2.029290 CGTCCCATAATACTTCCTCCGG 60.029 54.545 0.00 0.00 0.00 5.14
301 302 2.029290 CCGTCCCATAATACTTCCTCCG 60.029 54.545 0.00 0.00 0.00 4.63
302 303 3.236896 TCCGTCCCATAATACTTCCTCC 58.763 50.000 0.00 0.00 0.00 4.30
303 304 4.150359 TCTCCGTCCCATAATACTTCCTC 58.850 47.826 0.00 0.00 0.00 3.71
304 305 4.194678 TCTCCGTCCCATAATACTTCCT 57.805 45.455 0.00 0.00 0.00 3.36
305 306 5.715753 ACTATCTCCGTCCCATAATACTTCC 59.284 44.000 0.00 0.00 0.00 3.46
306 307 6.837471 ACTATCTCCGTCCCATAATACTTC 57.163 41.667 0.00 0.00 0.00 3.01
307 308 8.896722 AATACTATCTCCGTCCCATAATACTT 57.103 34.615 0.00 0.00 0.00 2.24
308 309 8.896722 AAATACTATCTCCGTCCCATAATACT 57.103 34.615 0.00 0.00 0.00 2.12
356 359 3.795688 AGTGTGAATTGATGAGGTGGT 57.204 42.857 0.00 0.00 0.00 4.16
390 393 6.140303 AGTAGTATTTTTCATGCATGCTGG 57.860 37.500 22.25 11.00 0.00 4.85
669 672 9.846248 GTTAGCTTTGACATGTCTCAAAAATAT 57.154 29.630 25.55 11.40 39.19 1.28
671 674 7.715657 TGTTAGCTTTGACATGTCTCAAAAAT 58.284 30.769 25.55 12.62 39.19 1.82
724 727 2.543687 CTACCCCGTGACAGTGCTCG 62.544 65.000 0.00 0.00 0.00 5.03
725 728 1.215647 CTACCCCGTGACAGTGCTC 59.784 63.158 0.00 0.00 0.00 4.26
732 735 2.632987 ATAATTGGCTACCCCGTGAC 57.367 50.000 0.00 0.00 35.87 3.67
750 753 4.023536 GCTCTCGACGAGAATCTAGGAAAT 60.024 45.833 26.42 0.00 42.62 2.17
751 754 3.312973 GCTCTCGACGAGAATCTAGGAAA 59.687 47.826 26.42 2.46 42.62 3.13
752 755 2.873472 GCTCTCGACGAGAATCTAGGAA 59.127 50.000 26.42 3.18 42.62 3.36
753 756 2.485903 GCTCTCGACGAGAATCTAGGA 58.514 52.381 26.42 4.16 42.62 2.94
754 757 1.533731 GGCTCTCGACGAGAATCTAGG 59.466 57.143 26.42 15.49 42.62 3.02
755 758 1.533731 GGGCTCTCGACGAGAATCTAG 59.466 57.143 26.42 16.15 42.62 2.43
756 759 1.134189 TGGGCTCTCGACGAGAATCTA 60.134 52.381 26.42 16.54 42.62 1.98
757 760 0.394488 TGGGCTCTCGACGAGAATCT 60.394 55.000 26.42 0.00 42.62 2.40
797 800 2.668144 AAGGAATCCCGGTGTTGAAA 57.332 45.000 0.00 0.00 37.58 2.69
806 809 4.067896 CCATGATCTTGTAAGGAATCCCG 58.932 47.826 7.73 0.00 37.58 5.14
808 811 3.823304 GGCCATGATCTTGTAAGGAATCC 59.177 47.826 0.00 0.00 0.00 3.01
819 822 1.570857 TTGGGTCGGGCCATGATCTT 61.571 55.000 4.39 0.00 39.65 2.40
998 1021 4.856607 GGAAGAGGACGCCGCGAG 62.857 72.222 21.79 3.30 0.00 5.03
1042 1065 1.455959 TCCTCCTTCTAGCTCGGCC 60.456 63.158 0.00 0.00 0.00 6.13
1043 1066 2.037871 CTCCTCCTTCTAGCTCGGC 58.962 63.158 0.00 0.00 0.00 5.54
1251 1274 0.252057 TCGATCTGAGTGTTCCCCCA 60.252 55.000 0.00 0.00 0.00 4.96
1252 1275 0.902531 TTCGATCTGAGTGTTCCCCC 59.097 55.000 0.00 0.00 0.00 5.40
1281 1305 0.467384 CAGAGCAATCGGATGAGGGT 59.533 55.000 0.00 0.00 0.00 4.34
1298 1322 8.341892 AGAAAAATAAAAGGTTAGAGGAGCAG 57.658 34.615 0.00 0.00 0.00 4.24
1308 1332 9.679661 ATCCACAAACAAGAAAAATAAAAGGTT 57.320 25.926 0.00 0.00 0.00 3.50
1316 1340 6.232581 TCCACATCCACAAACAAGAAAAAT 57.767 33.333 0.00 0.00 0.00 1.82
1319 1343 4.501229 GCATCCACATCCACAAACAAGAAA 60.501 41.667 0.00 0.00 0.00 2.52
1328 1356 0.464193 CATCCGCATCCACATCCACA 60.464 55.000 0.00 0.00 0.00 4.17
1400 1428 2.668280 GCTGACGGCGACCTTGAAC 61.668 63.158 16.62 0.00 0.00 3.18
1453 1481 3.426615 ACACTCAAAACTGGGTGACAAA 58.573 40.909 11.95 0.00 34.28 2.83
1541 1569 6.788598 TCCATACTACCGTATACACCAAAA 57.211 37.500 3.32 0.00 34.63 2.44
1543 1572 5.893255 ACTTCCATACTACCGTATACACCAA 59.107 40.000 3.32 0.00 34.63 3.67
1575 1604 8.469200 CAAATCAACACCAATCACCAGTATTAT 58.531 33.333 0.00 0.00 0.00 1.28
1588 1617 7.721842 TCCTACATTAGAACAAATCAACACCAA 59.278 33.333 0.00 0.00 0.00 3.67
1677 1706 6.424509 GTCCTGATGAAACATTGCAATTTCAA 59.575 34.615 24.48 13.14 45.34 2.69
1678 1707 5.927689 GTCCTGATGAAACATTGCAATTTCA 59.072 36.000 23.46 23.46 46.03 2.69
1697 1726 4.906618 ACTACCAGTACCAAAATGTCCTG 58.093 43.478 0.00 0.00 0.00 3.86
1702 1731 7.033530 TGAACAAACTACCAGTACCAAAATG 57.966 36.000 0.00 0.00 0.00 2.32
1934 1970 8.029642 ACTCCAATACGAAAGAAGTAACAATG 57.970 34.615 0.00 0.00 0.00 2.82
1952 1988 5.711976 ACCGAGAAAATTGAATGACTCCAAT 59.288 36.000 0.00 0.00 34.75 3.16
2653 2689 4.378459 GCAAGGTTTACAAGTCATTCCGAG 60.378 45.833 0.00 0.00 0.00 4.63
2665 2701 2.637872 ACTGGCTCTAGCAAGGTTTACA 59.362 45.455 11.03 0.00 46.30 2.41
2690 2726 3.426117 CTAGGTGCGCCCGTAGTGG 62.426 68.421 14.07 0.00 38.74 4.00
2691 2727 2.104331 CTAGGTGCGCCCGTAGTG 59.896 66.667 14.07 0.00 38.74 2.74
2692 2728 2.362120 ACTAGGTGCGCCCGTAGT 60.362 61.111 17.66 17.66 38.74 2.73
2696 2732 0.104304 AAATAGACTAGGTGCGCCCG 59.896 55.000 14.07 7.21 38.74 6.13
2755 2878 1.990563 CGGCCTACAGAAGTTACAACG 59.009 52.381 0.00 0.00 0.00 4.10
2901 3024 8.100508 ACAGAACCTCTTTAATGAGTTTTAGC 57.899 34.615 15.14 0.00 32.50 3.09
3033 3157 7.655732 TGATTATGTCGTCATAACAGGGTTATG 59.344 37.037 15.67 18.45 45.45 1.90
3034 3158 7.732025 TGATTATGTCGTCATAACAGGGTTAT 58.268 34.615 15.67 0.00 45.45 1.89
3125 3256 6.708949 GTGTCCTATGAGTGTTGTCCTTTAAA 59.291 38.462 0.00 0.00 0.00 1.52
3243 3374 7.465513 GCATTCCTAATTTCACTTAGTGGTACG 60.466 40.741 12.79 0.00 33.87 3.67
3575 3706 4.635765 CAGACAAGGAACAAGAGTTTCACA 59.364 41.667 0.00 0.00 38.30 3.58
3626 3757 5.920840 TGAACAAGAAGTAGAGAATGTCACG 59.079 40.000 0.00 0.00 0.00 4.35
3652 3784 2.566913 TGAACCTTTCTGCGCTGTTAA 58.433 42.857 9.73 6.69 0.00 2.01
3809 3941 5.056480 TCACAGGTCAAAACATGTCACTAG 58.944 41.667 0.00 0.00 46.88 2.57
3966 4098 6.407639 GGAAATTTTAACCTGTTCCTGGTTGT 60.408 38.462 13.76 0.00 43.63 3.32
4021 4153 9.888878 GGATATTTGTAATTGATCATCACACTG 57.111 33.333 0.00 0.00 0.00 3.66
4204 4343 7.824289 TCAACTGAAAATCTAGTCCATAACAGG 59.176 37.037 0.00 0.00 0.00 4.00
4300 4440 7.182060 TCCATAAAAGGAGTAGCCAAGAAAAT 58.818 34.615 0.00 0.00 40.02 1.82
4323 4464 5.755861 GGCTAAACTAGTCAGATCATGTTCC 59.244 44.000 0.00 0.00 0.00 3.62
4380 4528 9.886132 AGTTAAGATGATTTAGGTCGTTACATT 57.114 29.630 0.00 0.00 0.00 2.71
4465 4618 7.452880 AATTTAGCTGTGACAGAATTGCTAA 57.547 32.000 18.18 13.82 40.00 3.09
4473 4626 5.480422 TGGAGTCTAATTTAGCTGTGACAGA 59.520 40.000 18.18 0.00 32.44 3.41
4509 4663 0.886043 AAAGAGAGCATGTGCACGCA 60.886 50.000 17.36 0.00 45.16 5.24
4525 4679 6.879400 ACAGGATAGGCTGAAGTAGTTAAAG 58.121 40.000 0.00 0.00 0.00 1.85
4537 4691 0.471617 CAAGGGGACAGGATAGGCTG 59.528 60.000 0.00 0.00 0.00 4.85
4540 4694 1.584724 ACACAAGGGGACAGGATAGG 58.415 55.000 0.00 0.00 0.00 2.57
4642 4796 8.006298 ACAAAAAGTACAAATCACATCAGGAA 57.994 30.769 0.00 0.00 0.00 3.36
4803 4959 1.066929 GGCAAACCTTATGGGCAACAG 60.067 52.381 0.00 0.00 39.10 3.16
4828 4984 3.189606 AGAATAACACCACCTCATCCCA 58.810 45.455 0.00 0.00 0.00 4.37
4959 5126 1.283029 TCTTCATGGAGCCCCTTCTTG 59.717 52.381 0.00 0.00 0.00 3.02
5079 5246 7.761249 CCAAATTGATTTCTGGTCAACCTATTC 59.239 37.037 0.00 0.00 38.31 1.75
5086 5253 5.185635 CCTAGCCAAATTGATTTCTGGTCAA 59.814 40.000 0.00 0.00 39.65 3.18
5178 5345 0.321564 TCACCTCACGGGAATTGCTG 60.322 55.000 3.94 3.94 38.76 4.41
5179 5346 0.620556 ATCACCTCACGGGAATTGCT 59.379 50.000 0.00 0.00 38.76 3.91
5481 6159 4.743151 GCAGCATTGAATCCATAACACATG 59.257 41.667 0.00 0.00 0.00 3.21
5482 6160 4.403113 TGCAGCATTGAATCCATAACACAT 59.597 37.500 0.00 0.00 0.00 3.21
5522 6200 6.311723 GCAAATCGCTTTAAACTAGCACTAA 58.688 36.000 0.00 0.00 38.55 2.24
5587 6265 2.416547 GTGTAGATCAGCGTGCATGTTT 59.583 45.455 7.93 0.00 0.00 2.83
5590 6268 1.643880 TGTGTAGATCAGCGTGCATG 58.356 50.000 0.09 0.09 0.00 4.06
5596 6274 7.003939 TGAATAACATTTGTGTAGATCAGCG 57.996 36.000 0.00 0.00 0.00 5.18
5724 6406 0.683412 CATCATCCGGCTCCTCATCA 59.317 55.000 0.00 0.00 0.00 3.07
5735 6417 6.974048 GTCATCATCTAGATCTTCATCATCCG 59.026 42.308 1.03 0.00 33.72 4.18
5808 6490 5.076873 TCCCGAATTTGAATGGAAGTTCTT 58.923 37.500 2.25 0.00 0.00 2.52
5829 6511 1.208165 ATGTCCCCTCACCTGGTTCC 61.208 60.000 0.00 0.00 0.00 3.62
5924 8603 3.071874 TCTATGCTCCACCCTTTTGTG 57.928 47.619 0.00 0.00 35.98 3.33
5999 8682 5.301045 CACTGGGCATCATCAGTTAATCATT 59.699 40.000 0.00 0.00 41.71 2.57
6032 8715 4.624024 CACAGGAAACATCAAATGTCATGC 59.376 41.667 0.00 0.00 44.07 4.06
6125 8809 4.153256 GTTTTCCGTATAGGTTTTGCACG 58.847 43.478 0.00 0.00 41.99 5.34
6140 8824 1.894756 TCCGCACCAAGGTTTTCCG 60.895 57.895 0.00 0.00 46.35 4.30
6198 8897 6.223120 CACAAATTCTCTTAAACAAAGGGGG 58.777 40.000 0.00 0.00 36.22 5.40
6255 8958 4.217118 ACCAACAGAAATGTGCTGATTCTC 59.783 41.667 0.00 0.00 36.86 2.87
6315 9020 8.455682 GTCATTGAGTAAATCGTGGGAAAATAA 58.544 33.333 0.00 0.00 0.00 1.40
6320 9025 3.930229 CGTCATTGAGTAAATCGTGGGAA 59.070 43.478 0.00 0.00 0.00 3.97
6322 9027 2.607635 CCGTCATTGAGTAAATCGTGGG 59.392 50.000 0.00 0.00 0.00 4.61
6367 9084 0.895530 TGAGTAAGCCCTGGTTCTCG 59.104 55.000 0.00 0.00 0.00 4.04
6387 9104 2.224079 ACACACGTTGCATTCTGACATC 59.776 45.455 0.00 0.00 0.00 3.06
6388 9105 2.221169 ACACACGTTGCATTCTGACAT 58.779 42.857 0.00 0.00 0.00 3.06
6389 9106 1.597195 GACACACGTTGCATTCTGACA 59.403 47.619 0.00 0.00 0.00 3.58
6390 9107 1.597195 TGACACACGTTGCATTCTGAC 59.403 47.619 0.00 0.00 0.00 3.51
6391 9108 1.866601 CTGACACACGTTGCATTCTGA 59.133 47.619 0.00 0.00 0.00 3.27
6392 9109 1.661178 GCTGACACACGTTGCATTCTG 60.661 52.381 0.00 0.00 0.00 3.02
6393 9110 0.588252 GCTGACACACGTTGCATTCT 59.412 50.000 0.00 0.00 0.00 2.40
6394 9111 0.307453 TGCTGACACACGTTGCATTC 59.693 50.000 0.00 0.00 32.45 2.67
6395 9112 0.953727 ATGCTGACACACGTTGCATT 59.046 45.000 0.00 0.00 40.39 3.56
6396 9113 1.464608 GTATGCTGACACACGTTGCAT 59.535 47.619 0.00 0.00 43.35 3.96
6397 9114 0.865111 GTATGCTGACACACGTTGCA 59.135 50.000 0.00 0.00 38.58 4.08
6398 9115 0.865111 TGTATGCTGACACACGTTGC 59.135 50.000 0.00 0.00 0.00 4.17
6405 9122 4.490319 CGAATACGTTGTGTATGCTGACAC 60.490 45.833 12.99 12.99 43.04 3.67
6406 9123 3.610677 CGAATACGTTGTGTATGCTGACA 59.389 43.478 0.00 0.00 43.04 3.58
6407 9124 3.000078 CCGAATACGTTGTGTATGCTGAC 60.000 47.826 0.00 0.00 43.04 3.51
6408 9125 3.183754 CCGAATACGTTGTGTATGCTGA 58.816 45.455 0.00 0.00 43.04 4.26
6409 9126 2.284150 CCCGAATACGTTGTGTATGCTG 59.716 50.000 0.00 0.00 43.04 4.41
6410 9127 2.546778 CCCGAATACGTTGTGTATGCT 58.453 47.619 0.00 0.00 43.04 3.79
6411 9128 1.004292 GCCCGAATACGTTGTGTATGC 60.004 52.381 0.00 0.00 43.04 3.14
6412 9129 1.256895 CGCCCGAATACGTTGTGTATG 59.743 52.381 0.00 0.00 43.04 2.39
6413 9130 1.135024 ACGCCCGAATACGTTGTGTAT 60.135 47.619 0.00 0.00 45.81 2.29
6414 9131 0.243365 ACGCCCGAATACGTTGTGTA 59.757 50.000 0.00 0.00 40.09 2.90
6415 9132 1.005867 ACGCCCGAATACGTTGTGT 60.006 52.632 0.00 0.00 40.09 3.72
6416 9133 1.286354 ACACGCCCGAATACGTTGTG 61.286 55.000 0.00 0.00 41.32 3.33
6417 9134 0.600782 AACACGCCCGAATACGTTGT 60.601 50.000 0.00 0.00 41.32 3.32
6418 9135 0.513820 AAACACGCCCGAATACGTTG 59.486 50.000 0.00 0.00 41.32 4.10
6419 9136 0.792031 GAAACACGCCCGAATACGTT 59.208 50.000 0.00 0.00 41.32 3.99
6420 9137 1.346378 CGAAACACGCCCGAATACGT 61.346 55.000 0.00 0.00 44.75 3.57
6421 9138 1.342473 CGAAACACGCCCGAATACG 59.658 57.895 0.00 0.00 35.68 3.06
6422 9139 1.711500 CCGAAACACGCCCGAATAC 59.289 57.895 0.00 0.00 41.07 1.89
6423 9140 2.101835 GCCGAAACACGCCCGAATA 61.102 57.895 0.00 0.00 41.07 1.75
6424 9141 3.428282 GCCGAAACACGCCCGAAT 61.428 61.111 0.00 0.00 41.07 3.34
6425 9142 4.912485 TGCCGAAACACGCCCGAA 62.912 61.111 0.00 0.00 41.07 4.30
6428 9145 2.414840 ATTTGTGCCGAAACACGCCC 62.415 55.000 0.00 0.00 43.74 6.13
6429 9146 0.596341 AATTTGTGCCGAAACACGCC 60.596 50.000 0.00 0.00 43.74 5.68
6430 9147 0.502275 CAATTTGTGCCGAAACACGC 59.498 50.000 0.00 0.00 43.74 5.34
6431 9148 2.112475 TCAATTTGTGCCGAAACACG 57.888 45.000 0.00 0.00 43.74 4.49
6432 9149 3.182967 TGTTCAATTTGTGCCGAAACAC 58.817 40.909 0.00 0.00 41.10 3.32
6433 9150 3.510388 TGTTCAATTTGTGCCGAAACA 57.490 38.095 0.00 0.00 0.00 2.83
6434 9151 5.388371 GCTTATGTTCAATTTGTGCCGAAAC 60.388 40.000 0.00 0.00 0.00 2.78
6435 9152 4.683781 GCTTATGTTCAATTTGTGCCGAAA 59.316 37.500 0.00 0.00 0.00 3.46
6436 9153 4.022416 AGCTTATGTTCAATTTGTGCCGAA 60.022 37.500 0.00 0.00 0.00 4.30
6437 9154 3.505680 AGCTTATGTTCAATTTGTGCCGA 59.494 39.130 0.00 0.00 0.00 5.54
6438 9155 3.836949 AGCTTATGTTCAATTTGTGCCG 58.163 40.909 0.00 0.00 0.00 5.69
6439 9156 7.832503 AAATAGCTTATGTTCAATTTGTGCC 57.167 32.000 0.00 0.00 0.00 5.01
6555 9272 9.199982 GTCAAAAGATCAAATGTGTGATGAAAT 57.800 29.630 0.00 0.00 38.38 2.17
6556 9273 7.652909 GGTCAAAAGATCAAATGTGTGATGAAA 59.347 33.333 0.00 0.00 38.38 2.69
6557 9274 7.147312 GGTCAAAAGATCAAATGTGTGATGAA 58.853 34.615 0.00 0.00 38.38 2.57
6558 9275 6.264970 TGGTCAAAAGATCAAATGTGTGATGA 59.735 34.615 0.00 0.00 38.38 2.92
6559 9276 6.448852 TGGTCAAAAGATCAAATGTGTGATG 58.551 36.000 0.00 0.00 38.38 3.07
6560 9277 6.294899 CCTGGTCAAAAGATCAAATGTGTGAT 60.295 38.462 0.00 0.00 41.01 3.06
6604 9321 5.000591 TGCTCCAATCTCGATTTGTTGTTA 58.999 37.500 7.28 0.00 0.00 2.41
6649 9366 0.837691 TCAGGAGGCTTGCAGGAAGA 60.838 55.000 5.73 0.00 32.82 2.87
6700 9417 8.354711 TGTGAAGACTATCTCAAACTCTGTAT 57.645 34.615 0.00 0.00 0.00 2.29
6769 9486 1.302192 GGGCGGCACTACAACAAGA 60.302 57.895 12.47 0.00 0.00 3.02
6833 9550 1.073897 GTGCTCCCCTGTCTTTGCT 59.926 57.895 0.00 0.00 0.00 3.91
6888 9605 3.157087 GGATTTGGCACTCCTTCTTTGA 58.843 45.455 7.82 0.00 0.00 2.69
6931 9648 2.484770 GGTTGCAGTGTGGTACTTGAGA 60.485 50.000 0.00 0.00 37.60 3.27
6956 9673 0.451783 GGATGTACAAAGGCGCCAAG 59.548 55.000 31.54 19.97 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.