Multiple sequence alignment - TraesCS3A01G352900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G352900 chr3A 100.000 3487 0 0 1 3487 600929921 600926435 0.000000e+00 6440
1 TraesCS3A01G352900 chr3A 97.386 153 4 0 1 153 217823350 217823198 9.600000e-66 261
2 TraesCS3A01G352900 chr3D 90.545 2972 151 66 220 3101 458627457 458624526 0.000000e+00 3812
3 TraesCS3A01G352900 chr3D 95.985 274 8 3 3086 3357 111256769 111257041 3.190000e-120 442
4 TraesCS3A01G352900 chr3D 98.485 132 0 1 3356 3487 458624530 458624401 7.530000e-57 231
5 TraesCS3A01G352900 chr3B 91.749 2545 108 43 626 3101 605668575 605666064 0.000000e+00 3443
6 TraesCS3A01G352900 chr3B 92.593 216 11 4 148 363 605676050 605675840 4.370000e-79 305
7 TraesCS3A01G352900 chr3B 99.242 132 1 0 3356 3487 605666068 605665937 4.500000e-59 239
8 TraesCS3A01G352900 chr3B 78.325 203 28 11 417 614 605675724 605675533 2.200000e-22 117
9 TraesCS3A01G352900 chr1A 97.070 273 7 1 3094 3365 508965816 508966088 3.170000e-125 459
10 TraesCS3A01G352900 chr1A 96.981 265 8 0 3094 3358 31856683 31856419 2.470000e-121 446
11 TraesCS3A01G352900 chr1A 98.658 149 2 0 1 149 494815560 494815412 7.420000e-67 265
12 TraesCS3A01G352900 chr1A 89.000 200 17 5 1003 1199 485363000 485362803 3.480000e-60 243
13 TraesCS3A01G352900 chr1A 84.186 215 20 12 992 1198 579141037 579140829 2.750000e-46 196
14 TraesCS3A01G352900 chr7D 97.727 264 6 0 3095 3358 182347415 182347678 4.100000e-124 455
15 TraesCS3A01G352900 chr2B 97.719 263 6 0 3097 3359 72134669 72134407 1.480000e-123 453
16 TraesCS3A01G352900 chr4B 97.338 263 7 0 3097 3359 43088720 43088982 6.870000e-122 448
17 TraesCS3A01G352900 chr1B 97.338 263 7 0 3097 3359 295614846 295615108 6.870000e-122 448
18 TraesCS3A01G352900 chr1B 88.835 206 17 6 1003 1205 518186121 518185919 7.470000e-62 248
19 TraesCS3A01G352900 chr7A 97.004 267 5 3 3097 3363 730579836 730580099 2.470000e-121 446
20 TraesCS3A01G352900 chr7A 98.658 149 2 0 1 149 47626319 47626467 7.420000e-67 265
21 TraesCS3A01G352900 chr7A 98.649 148 2 0 1 148 589994068 589994215 2.670000e-66 263
22 TraesCS3A01G352900 chr7A 98.000 150 3 0 1 150 521961199 521961348 9.600000e-66 261
23 TraesCS3A01G352900 chr6B 96.958 263 8 0 3096 3358 262375546 262375808 3.190000e-120 442
24 TraesCS3A01G352900 chr6A 98.013 151 3 0 1 151 1829871 1830021 2.670000e-66 263
25 TraesCS3A01G352900 chr7B 98.639 147 2 0 1 147 730811992 730812138 9.600000e-66 261
26 TraesCS3A01G352900 chr2A 96.774 155 4 1 1 155 709834504 709834351 1.240000e-64 257
27 TraesCS3A01G352900 chr2A 84.834 211 19 8 992 1194 274139655 274139860 2.120000e-47 200
28 TraesCS3A01G352900 chr5A 95.031 161 8 0 1 161 371027862 371028022 1.610000e-63 254
29 TraesCS3A01G352900 chr5A 84.651 215 19 11 992 1198 75979854 75979646 5.900000e-48 202
30 TraesCS3A01G352900 chr1D 89.000 200 17 5 1003 1199 385812595 385812398 3.480000e-60 243
31 TraesCS3A01G352900 chr5B 88.272 162 17 2 1037 1197 629217212 629217052 3.550000e-45 193


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G352900 chr3A 600926435 600929921 3486 True 6440.0 6440 100.0000 1 3487 1 chr3A.!!$R2 3486
1 TraesCS3A01G352900 chr3D 458624401 458627457 3056 True 2021.5 3812 94.5150 220 3487 2 chr3D.!!$R1 3267
2 TraesCS3A01G352900 chr3B 605665937 605668575 2638 True 1841.0 3443 95.4955 626 3487 2 chr3B.!!$R1 2861
3 TraesCS3A01G352900 chr3B 605675533 605676050 517 True 211.0 305 85.4590 148 614 2 chr3B.!!$R2 466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
959 1070 0.107703 TGACGAATCCATGGCCTGAC 60.108 55.0 6.96 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2682 2850 3.189618 TCTGCTATGATTCAGCACAGG 57.81 47.619 10.8 0.0 43.9 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
41 42 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
42 43 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
43 44 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
44 45 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
46 47 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
47 48 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
85 86 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
86 87 4.757149 AGTGTAGGTTCACTCATTTTGCTC 59.243 41.667 0.00 0.00 44.07 4.26
87 88 4.072131 TGTAGGTTCACTCATTTTGCTCC 58.928 43.478 0.00 0.00 0.00 4.70
88 89 2.154462 AGGTTCACTCATTTTGCTCCG 58.846 47.619 0.00 0.00 0.00 4.63
89 90 1.880027 GGTTCACTCATTTTGCTCCGT 59.120 47.619 0.00 0.00 0.00 4.69
90 91 3.071479 GGTTCACTCATTTTGCTCCGTA 58.929 45.455 0.00 0.00 0.00 4.02
91 92 3.689649 GGTTCACTCATTTTGCTCCGTAT 59.310 43.478 0.00 0.00 0.00 3.06
92 93 4.437390 GGTTCACTCATTTTGCTCCGTATG 60.437 45.833 0.00 0.00 0.00 2.39
93 94 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
94 95 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
95 96 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
96 97 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
97 98 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
98 99 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
99 100 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
100 101 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
101 102 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
102 103 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
103 104 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
104 105 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
105 106 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
106 107 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
107 108 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
108 109 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
109 110 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
110 111 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
111 112 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
112 113 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
113 114 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
114 115 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
115 116 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
116 117 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
117 118 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
118 119 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
119 120 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
120 121 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
121 122 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
122 123 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
123 124 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
124 125 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
125 126 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
126 127 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
127 128 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
128 129 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
129 130 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
130 131 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
133 134 9.959721 AATGCCTAGAAAGACAAGTATTTAAGA 57.040 29.630 0.00 0.00 0.00 2.10
134 135 9.959721 ATGCCTAGAAAGACAAGTATTTAAGAA 57.040 29.630 0.00 0.00 0.00 2.52
135 136 9.216117 TGCCTAGAAAGACAAGTATTTAAGAAC 57.784 33.333 0.00 0.00 0.00 3.01
136 137 8.381387 GCCTAGAAAGACAAGTATTTAAGAACG 58.619 37.037 0.00 0.00 0.00 3.95
137 138 8.870879 CCTAGAAAGACAAGTATTTAAGAACGG 58.129 37.037 0.00 0.00 0.00 4.44
138 139 9.635520 CTAGAAAGACAAGTATTTAAGAACGGA 57.364 33.333 0.00 0.00 0.00 4.69
139 140 8.535690 AGAAAGACAAGTATTTAAGAACGGAG 57.464 34.615 0.00 0.00 0.00 4.63
140 141 7.603024 AGAAAGACAAGTATTTAAGAACGGAGG 59.397 37.037 0.00 0.00 0.00 4.30
141 142 5.731591 AGACAAGTATTTAAGAACGGAGGG 58.268 41.667 0.00 0.00 0.00 4.30
142 143 5.482878 AGACAAGTATTTAAGAACGGAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
143 144 5.731591 ACAAGTATTTAAGAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
144 145 5.247792 ACAAGTATTTAAGAACGGAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
145 146 6.438425 ACAAGTATTTAAGAACGGAGGGAGTA 59.562 38.462 0.00 0.00 0.00 2.59
146 147 6.712179 AGTATTTAAGAACGGAGGGAGTAG 57.288 41.667 0.00 0.00 0.00 2.57
147 148 6.430007 AGTATTTAAGAACGGAGGGAGTAGA 58.570 40.000 0.00 0.00 0.00 2.59
148 149 6.894103 AGTATTTAAGAACGGAGGGAGTAGAA 59.106 38.462 0.00 0.00 0.00 2.10
149 150 5.656213 TTTAAGAACGGAGGGAGTAGAAG 57.344 43.478 0.00 0.00 0.00 2.85
150 151 3.453059 AAGAACGGAGGGAGTAGAAGA 57.547 47.619 0.00 0.00 0.00 2.87
151 152 2.725637 AGAACGGAGGGAGTAGAAGAC 58.274 52.381 0.00 0.00 0.00 3.01
152 153 2.041350 AGAACGGAGGGAGTAGAAGACA 59.959 50.000 0.00 0.00 0.00 3.41
153 154 2.599408 ACGGAGGGAGTAGAAGACAA 57.401 50.000 0.00 0.00 0.00 3.18
154 155 3.103080 ACGGAGGGAGTAGAAGACAAT 57.897 47.619 0.00 0.00 0.00 2.71
188 189 3.093717 ACTATCACCGCCTGATTTACG 57.906 47.619 0.00 0.00 40.38 3.18
192 193 2.980568 TCACCGCCTGATTTACGATTT 58.019 42.857 0.00 0.00 0.00 2.17
212 213 6.376018 CGATTTCCCAGTTAACATTTCCCTTA 59.624 38.462 8.61 0.00 0.00 2.69
214 215 7.916077 TTTCCCAGTTAACATTTCCCTTAAA 57.084 32.000 8.61 0.00 0.00 1.52
234 235 3.668141 AGTATGGATTTGGTGATGGCA 57.332 42.857 0.00 0.00 0.00 4.92
263 264 2.097142 GCAGCAATTTAGGCAGACTCTG 59.903 50.000 1.21 1.21 34.12 3.35
264 265 3.341823 CAGCAATTTAGGCAGACTCTGT 58.658 45.455 7.89 0.00 33.43 3.41
285 286 4.756642 TGTAGATTTGATGATGGCGATTCC 59.243 41.667 0.00 0.00 0.00 3.01
428 491 7.406031 ACAGTGAAAACGAAGATAGATCCTA 57.594 36.000 0.00 0.00 0.00 2.94
513 600 7.569240 AGGGGTGATTGTTTTCTAGATTAGAG 58.431 38.462 0.00 0.00 35.96 2.43
541 628 0.466922 ATGATGTAGCCCAAGCAGCC 60.467 55.000 0.00 0.00 43.56 4.85
543 630 0.394899 GATGTAGCCCAAGCAGCCTT 60.395 55.000 0.00 0.00 43.56 4.35
545 632 0.609131 TGTAGCCCAAGCAGCCTTTC 60.609 55.000 0.00 0.00 43.56 2.62
546 633 1.000896 TAGCCCAAGCAGCCTTTCC 60.001 57.895 0.00 0.00 43.56 3.13
566 654 0.756294 TGTTTCGAGAACAGAGCCCA 59.244 50.000 8.47 0.00 0.00 5.36
567 655 1.140052 TGTTTCGAGAACAGAGCCCAA 59.860 47.619 8.47 0.00 0.00 4.12
570 658 2.169832 TCGAGAACAGAGCCCAAAAG 57.830 50.000 0.00 0.00 0.00 2.27
620 708 5.437060 ACGAAAGAAGCCCATATAACATGT 58.563 37.500 0.00 0.00 0.00 3.21
623 711 6.469782 AAAGAAGCCCATATAACATGTTGG 57.530 37.500 21.42 13.93 0.00 3.77
640 728 1.668826 TGGTAGAAGAAGCCCACCAT 58.331 50.000 0.00 0.00 34.40 3.55
641 729 2.840511 TGGTAGAAGAAGCCCACCATA 58.159 47.619 0.00 0.00 34.40 2.74
789 877 3.068691 TCCCCTTCTCCAGCGTCG 61.069 66.667 0.00 0.00 0.00 5.12
929 1023 4.220163 CGATCCCTCCCCTCCCGA 62.220 72.222 0.00 0.00 0.00 5.14
930 1024 2.533964 GATCCCTCCCCTCCCGAT 59.466 66.667 0.00 0.00 0.00 4.18
950 1061 4.812476 CGCGCCCTGACGAATCCA 62.812 66.667 0.00 0.00 34.06 3.41
951 1062 2.203070 GCGCCCTGACGAATCCAT 60.203 61.111 0.00 0.00 34.06 3.41
952 1063 2.537560 GCGCCCTGACGAATCCATG 61.538 63.158 0.00 0.00 34.06 3.66
953 1064 1.889105 CGCCCTGACGAATCCATGG 60.889 63.158 4.97 4.97 34.06 3.66
954 1065 2.189499 GCCCTGACGAATCCATGGC 61.189 63.158 6.96 0.00 37.96 4.40
955 1066 1.526917 CCCTGACGAATCCATGGCC 60.527 63.158 6.96 0.00 0.00 5.36
956 1067 1.528824 CCTGACGAATCCATGGCCT 59.471 57.895 6.96 0.00 0.00 5.19
957 1068 0.816825 CCTGACGAATCCATGGCCTG 60.817 60.000 6.96 0.00 0.00 4.85
958 1069 0.178767 CTGACGAATCCATGGCCTGA 59.821 55.000 6.96 0.00 0.00 3.86
959 1070 0.107703 TGACGAATCCATGGCCTGAC 60.108 55.000 6.96 0.00 0.00 3.51
960 1071 0.815615 GACGAATCCATGGCCTGACC 60.816 60.000 6.96 0.00 39.84 4.02
961 1072 1.526917 CGAATCCATGGCCTGACCC 60.527 63.158 6.96 0.00 37.83 4.46
997 1108 4.851179 CTAGGGTTTCGGGGCGCC 62.851 72.222 21.18 21.18 0.00 6.53
1274 1395 4.368543 GAACGAACTCGGCCGGGT 62.369 66.667 28.95 28.95 44.95 5.28
1284 1405 2.732016 GGCCGGGTTGGTTTTGTC 59.268 61.111 2.18 0.00 41.21 3.18
1286 1407 1.396607 GGCCGGGTTGGTTTTGTCTT 61.397 55.000 2.18 0.00 41.21 3.01
1287 1408 0.249280 GCCGGGTTGGTTTTGTCTTG 60.249 55.000 2.18 0.00 41.21 3.02
1330 1458 1.339151 TGTGGTTTGGTTTGGTTTGGC 60.339 47.619 0.00 0.00 0.00 4.52
1482 1610 2.554142 TGTAATCATGGCTCTTGCTCG 58.446 47.619 0.00 0.00 39.59 5.03
1486 1614 2.823147 ATGGCTCTTGCTCGCTGC 60.823 61.111 0.00 0.00 43.25 5.25
1487 1615 3.326646 ATGGCTCTTGCTCGCTGCT 62.327 57.895 0.00 0.00 43.37 4.24
1488 1616 3.497932 GGCTCTTGCTCGCTGCTG 61.498 66.667 0.00 0.00 43.37 4.41
1489 1617 2.741598 GCTCTTGCTCGCTGCTGT 60.742 61.111 0.00 0.00 43.37 4.40
1492 1620 0.997932 CTCTTGCTCGCTGCTGTTAG 59.002 55.000 0.00 0.00 43.37 2.34
1618 1751 9.553064 GAGGTATGTGATCTTGTAATCAATTCT 57.447 33.333 0.00 0.00 37.41 2.40
1619 1752 9.911788 AGGTATGTGATCTTGTAATCAATTCTT 57.088 29.630 0.00 0.00 37.41 2.52
1654 1787 3.313249 CGGCATGCTATTGATTCACTGAA 59.687 43.478 18.92 0.00 0.00 3.02
1656 1789 5.506815 CGGCATGCTATTGATTCACTGAAAT 60.507 40.000 18.92 0.00 0.00 2.17
1657 1790 6.278363 GGCATGCTATTGATTCACTGAAATT 58.722 36.000 18.92 0.00 0.00 1.82
1722 1856 7.722285 TCCTAGTTTAAACATAGCCACAAAAGT 59.278 33.333 20.06 0.00 0.00 2.66
1723 1857 9.005777 CCTAGTTTAAACATAGCCACAAAAGTA 57.994 33.333 20.06 0.00 0.00 2.24
1724 1858 9.821662 CTAGTTTAAACATAGCCACAAAAGTAC 57.178 33.333 20.06 0.00 0.00 2.73
1725 1859 7.654568 AGTTTAAACATAGCCACAAAAGTACC 58.345 34.615 20.06 0.00 0.00 3.34
1730 1868 0.112412 AGCCACAAAAGTACCCCTGG 59.888 55.000 0.00 0.00 0.00 4.45
1733 1871 1.247567 CACAAAAGTACCCCTGGCTG 58.752 55.000 0.00 0.00 0.00 4.85
1756 1908 2.638480 AGGCCGCATAATTTGAGCTA 57.362 45.000 0.00 0.00 0.00 3.32
1843 1995 1.291877 ATGCAAGTTCCTCGCGTGAC 61.292 55.000 10.21 0.54 0.00 3.67
1860 2012 3.492337 GTGACCACCTGAATAAAACCCA 58.508 45.455 0.00 0.00 0.00 4.51
1864 2016 4.488770 ACCACCTGAATAAAACCCACATT 58.511 39.130 0.00 0.00 0.00 2.71
1916 2068 1.927487 AGTTGCATTCATGAAGGCCA 58.073 45.000 34.56 25.19 46.35 5.36
2056 2212 5.615289 AGCTTCTGTTTCTATCTTGTGTGT 58.385 37.500 0.00 0.00 0.00 3.72
2299 2457 3.565764 TTAGATGGTTCAGCATGGAGG 57.434 47.619 0.00 0.00 36.16 4.30
2346 2504 3.820557 CAACCCCAGGTAACCTATCATG 58.179 50.000 0.00 0.00 33.12 3.07
2354 2512 3.073062 AGGTAACCTATCATGCCATCACC 59.927 47.826 0.00 0.00 28.47 4.02
2376 2534 6.823689 CACCTGCCATTACAACTCTATACTTT 59.176 38.462 0.00 0.00 0.00 2.66
2557 2715 7.326063 GGTAATTTTGTTGTACTGACAAGCATC 59.674 37.037 12.78 6.82 46.20 3.91
2558 2716 4.829064 TTTGTTGTACTGACAAGCATCC 57.171 40.909 12.78 0.00 46.20 3.51
2745 2913 5.596836 TGTTTCATGCTTCCTGTTTCTTT 57.403 34.783 0.00 0.00 0.00 2.52
2788 2956 9.681692 CTGTCAGTATTTTGAACAAATTCATCA 57.318 29.630 0.82 0.00 44.36 3.07
2865 3037 5.360591 TCTCGAATCTCTTGAATTAAGGGC 58.639 41.667 0.00 0.00 36.78 5.19
2887 3059 4.433615 CTGACTCTTATGGTACGTGCAAT 58.566 43.478 5.86 1.66 0.00 3.56
2921 3093 7.679783 TCTCTAGAATGTGTTTCTTTGATGGA 58.320 34.615 0.00 0.00 42.15 3.41
2949 3121 7.309499 CGAATTGTATGAGAATCCCTAGCTACT 60.309 40.741 0.00 0.00 0.00 2.57
3029 3201 3.439129 GCTGTGGGTTTCAGTATGGTTAC 59.561 47.826 0.00 0.00 36.16 2.50
3101 3273 6.749923 AAATCTGCAACTCTGAAATACTCC 57.250 37.500 0.00 0.00 0.00 3.85
3102 3274 4.207891 TCTGCAACTCTGAAATACTCCC 57.792 45.455 0.00 0.00 0.00 4.30
3103 3275 3.840666 TCTGCAACTCTGAAATACTCCCT 59.159 43.478 0.00 0.00 0.00 4.20
3104 3276 4.081420 TCTGCAACTCTGAAATACTCCCTC 60.081 45.833 0.00 0.00 0.00 4.30
3105 3277 3.055094 TGCAACTCTGAAATACTCCCTCC 60.055 47.826 0.00 0.00 0.00 4.30
3106 3278 3.786635 CAACTCTGAAATACTCCCTCCG 58.213 50.000 0.00 0.00 0.00 4.63
3107 3279 3.103080 ACTCTGAAATACTCCCTCCGT 57.897 47.619 0.00 0.00 0.00 4.69
3108 3280 3.442076 ACTCTGAAATACTCCCTCCGTT 58.558 45.455 0.00 0.00 0.00 4.44
3109 3281 3.838903 ACTCTGAAATACTCCCTCCGTTT 59.161 43.478 0.00 0.00 0.00 3.60
3110 3282 4.081586 ACTCTGAAATACTCCCTCCGTTTC 60.082 45.833 0.00 0.00 0.00 2.78
3111 3283 4.094476 TCTGAAATACTCCCTCCGTTTCT 58.906 43.478 0.00 0.00 31.79 2.52
3112 3284 4.530946 TCTGAAATACTCCCTCCGTTTCTT 59.469 41.667 0.00 0.00 31.79 2.52
3113 3285 5.012768 TCTGAAATACTCCCTCCGTTTCTTT 59.987 40.000 0.00 0.00 31.79 2.52
3114 3286 5.627135 TGAAATACTCCCTCCGTTTCTTTT 58.373 37.500 0.00 0.00 31.79 2.27
3115 3287 6.066032 TGAAATACTCCCTCCGTTTCTTTTT 58.934 36.000 0.00 0.00 31.79 1.94
3116 3288 7.225725 TGAAATACTCCCTCCGTTTCTTTTTA 58.774 34.615 0.00 0.00 31.79 1.52
3117 3289 7.389607 TGAAATACTCCCTCCGTTTCTTTTTAG 59.610 37.037 0.00 0.00 31.79 1.85
3118 3290 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
3119 3291 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
3120 3292 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
3121 3293 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
3122 3294 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
3123 3295 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
3124 3296 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
3125 3297 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
3126 3298 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
3127 3299 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
3128 3300 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
3129 3301 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
3130 3302 8.122952 CCGTTTCTTTTTAGTCTGCATATAAGG 58.877 37.037 0.00 0.00 0.00 2.69
3131 3303 8.665685 CGTTTCTTTTTAGTCTGCATATAAGGT 58.334 33.333 0.00 0.00 0.00 3.50
3135 3307 8.956426 TCTTTTTAGTCTGCATATAAGGTTTGG 58.044 33.333 0.00 0.00 0.00 3.28
3136 3308 8.644374 TTTTTAGTCTGCATATAAGGTTTGGT 57.356 30.769 0.00 0.00 0.00 3.67
3137 3309 7.859325 TTTAGTCTGCATATAAGGTTTGGTC 57.141 36.000 0.00 0.00 0.00 4.02
3138 3310 5.435686 AGTCTGCATATAAGGTTTGGTCA 57.564 39.130 0.00 0.00 0.00 4.02
3139 3311 5.815581 AGTCTGCATATAAGGTTTGGTCAA 58.184 37.500 0.00 0.00 0.00 3.18
3140 3312 6.245408 AGTCTGCATATAAGGTTTGGTCAAA 58.755 36.000 0.00 0.00 0.00 2.69
3141 3313 6.375455 AGTCTGCATATAAGGTTTGGTCAAAG 59.625 38.462 0.00 0.00 0.00 2.77
3142 3314 6.151144 GTCTGCATATAAGGTTTGGTCAAAGT 59.849 38.462 0.00 0.00 0.00 2.66
3143 3315 6.374333 TCTGCATATAAGGTTTGGTCAAAGTC 59.626 38.462 0.00 0.00 0.00 3.01
3144 3316 6.007076 TGCATATAAGGTTTGGTCAAAGTCA 58.993 36.000 0.00 0.00 0.00 3.41
3145 3317 6.491745 TGCATATAAGGTTTGGTCAAAGTCAA 59.508 34.615 0.00 0.00 0.00 3.18
3146 3318 7.029563 GCATATAAGGTTTGGTCAAAGTCAAG 58.970 38.462 0.00 0.00 0.00 3.02
3147 3319 3.801114 AAGGTTTGGTCAAAGTCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
3148 3320 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
3149 3321 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
3223 3395 8.694581 TGAAATCAATATTATCAGATGCACCA 57.305 30.769 0.00 0.00 0.00 4.17
3224 3396 8.570488 TGAAATCAATATTATCAGATGCACCAC 58.430 33.333 0.00 0.00 0.00 4.16
3225 3397 8.467963 AAATCAATATTATCAGATGCACCACA 57.532 30.769 0.00 0.00 0.00 4.17
3226 3398 8.467963 AATCAATATTATCAGATGCACCACAA 57.532 30.769 0.00 0.00 0.00 3.33
3227 3399 7.878547 TCAATATTATCAGATGCACCACAAA 57.121 32.000 0.00 0.00 0.00 2.83
3228 3400 8.291191 TCAATATTATCAGATGCACCACAAAA 57.709 30.769 0.00 0.00 0.00 2.44
3229 3401 8.916062 TCAATATTATCAGATGCACCACAAAAT 58.084 29.630 0.00 0.00 0.00 1.82
3230 3402 8.974408 CAATATTATCAGATGCACCACAAAATG 58.026 33.333 0.00 0.00 0.00 2.32
3231 3403 5.981088 TTATCAGATGCACCACAAAATGT 57.019 34.783 0.00 0.00 0.00 2.71
3232 3404 7.643569 ATTATCAGATGCACCACAAAATGTA 57.356 32.000 0.00 0.00 0.00 2.29
3233 3405 7.643569 TTATCAGATGCACCACAAAATGTAT 57.356 32.000 0.00 0.00 0.00 2.29
3234 3406 5.981088 TCAGATGCACCACAAAATGTATT 57.019 34.783 0.00 0.00 0.00 1.89
3235 3407 6.343716 TCAGATGCACCACAAAATGTATTT 57.656 33.333 0.00 0.00 0.00 1.40
3236 3408 6.757237 TCAGATGCACCACAAAATGTATTTT 58.243 32.000 0.00 0.00 40.37 1.82
3237 3409 6.867816 TCAGATGCACCACAAAATGTATTTTC 59.132 34.615 0.00 0.00 37.86 2.29
3238 3410 6.645827 CAGATGCACCACAAAATGTATTTTCA 59.354 34.615 0.00 0.00 37.86 2.69
3239 3411 7.332430 CAGATGCACCACAAAATGTATTTTCAT 59.668 33.333 0.00 0.88 37.86 2.57
3240 3412 8.530311 AGATGCACCACAAAATGTATTTTCATA 58.470 29.630 0.00 0.00 37.86 2.15
3241 3413 7.881643 TGCACCACAAAATGTATTTTCATAC 57.118 32.000 0.00 0.00 37.86 2.39
3242 3414 7.665690 TGCACCACAAAATGTATTTTCATACT 58.334 30.769 0.00 0.00 37.86 2.12
3243 3415 8.797438 TGCACCACAAAATGTATTTTCATACTA 58.203 29.630 0.00 0.00 37.86 1.82
3244 3416 9.801873 GCACCACAAAATGTATTTTCATACTAT 57.198 29.630 0.00 0.00 37.86 2.12
3318 3490 6.190954 ACTTTGTGTAGTTTGACTTTGACC 57.809 37.500 0.00 0.00 0.00 4.02
3319 3491 5.708230 ACTTTGTGTAGTTTGACTTTGACCA 59.292 36.000 0.00 0.00 0.00 4.02
3320 3492 6.207810 ACTTTGTGTAGTTTGACTTTGACCAA 59.792 34.615 0.00 0.00 0.00 3.67
3321 3493 6.576662 TTGTGTAGTTTGACTTTGACCAAA 57.423 33.333 0.00 0.00 0.00 3.28
3322 3494 6.767524 TGTGTAGTTTGACTTTGACCAAAT 57.232 33.333 0.00 0.00 35.14 2.32
3323 3495 6.791303 TGTGTAGTTTGACTTTGACCAAATC 58.209 36.000 0.00 0.00 35.14 2.17
3324 3496 6.601613 TGTGTAGTTTGACTTTGACCAAATCT 59.398 34.615 0.00 0.00 35.14 2.40
3325 3497 7.122055 TGTGTAGTTTGACTTTGACCAAATCTT 59.878 33.333 0.00 0.00 35.14 2.40
3326 3498 8.617809 GTGTAGTTTGACTTTGACCAAATCTTA 58.382 33.333 0.00 0.00 35.14 2.10
3327 3499 9.349713 TGTAGTTTGACTTTGACCAAATCTTAT 57.650 29.630 0.00 0.00 35.14 1.73
3331 3503 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
3332 3504 7.015226 TGACTTTGACCAAATCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
3333 3505 6.038161 TGACTTTGACCAAATCTTATATGCGG 59.962 38.462 0.00 0.00 0.00 5.69
3334 3506 6.119536 ACTTTGACCAAATCTTATATGCGGA 58.880 36.000 0.00 0.00 0.00 5.54
3335 3507 6.260936 ACTTTGACCAAATCTTATATGCGGAG 59.739 38.462 0.00 0.00 0.00 4.63
3336 3508 5.290493 TGACCAAATCTTATATGCGGAGT 57.710 39.130 0.00 0.00 0.00 3.85
3337 3509 6.413783 TGACCAAATCTTATATGCGGAGTA 57.586 37.500 0.00 0.00 0.00 2.59
3338 3510 6.822442 TGACCAAATCTTATATGCGGAGTAA 58.178 36.000 0.00 0.00 0.00 2.24
3339 3511 7.276658 TGACCAAATCTTATATGCGGAGTAAA 58.723 34.615 0.00 0.00 0.00 2.01
3340 3512 7.771361 TGACCAAATCTTATATGCGGAGTAAAA 59.229 33.333 0.00 0.00 0.00 1.52
3341 3513 8.514330 ACCAAATCTTATATGCGGAGTAAAAA 57.486 30.769 0.00 0.00 0.00 1.94
3342 3514 8.621286 ACCAAATCTTATATGCGGAGTAAAAAG 58.379 33.333 0.00 0.00 0.00 2.27
3343 3515 8.836413 CCAAATCTTATATGCGGAGTAAAAAGA 58.164 33.333 0.00 0.00 0.00 2.52
3347 3519 7.902032 TCTTATATGCGGAGTAAAAAGAAACG 58.098 34.615 0.00 0.00 0.00 3.60
3348 3520 3.824414 ATGCGGAGTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
3349 3521 2.836262 TGCGGAGTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
3350 3522 2.803956 TGCGGAGTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
3351 3523 2.159037 GCGGAGTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
3352 3524 2.740447 CGGAGTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
3353 3525 3.555586 CGGAGTAAAAAGAAACGGAGGGA 60.556 47.826 0.00 0.00 0.00 4.20
3354 3526 4.001652 GGAGTAAAAAGAAACGGAGGGAG 58.998 47.826 0.00 0.00 0.00 4.30
3355 3527 4.504514 GGAGTAAAAAGAAACGGAGGGAGT 60.505 45.833 0.00 0.00 0.00 3.85
3356 3528 5.279657 GGAGTAAAAAGAAACGGAGGGAGTA 60.280 44.000 0.00 0.00 0.00 2.59
3357 3529 5.545588 AGTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
3358 3530 4.701651 AAAAAGAAACGGAGGGAGTACT 57.298 40.909 0.00 0.00 0.00 2.73
3359 3531 3.957591 AAAGAAACGGAGGGAGTACTC 57.042 47.619 14.87 14.87 36.76 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
15 16 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
16 17 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
17 18 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
18 19 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
19 20 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
20 21 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
21 22 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
50 51 9.036980 AGTGAACCTACACTCTAAAATATGTCT 57.963 33.333 0.00 0.00 46.36 3.41
64 65 4.083271 GGAGCAAAATGAGTGAACCTACAC 60.083 45.833 0.00 0.00 40.60 2.90
65 66 4.072131 GGAGCAAAATGAGTGAACCTACA 58.928 43.478 0.00 0.00 0.00 2.74
66 67 3.125316 CGGAGCAAAATGAGTGAACCTAC 59.875 47.826 0.00 0.00 0.00 3.18
67 68 3.244422 ACGGAGCAAAATGAGTGAACCTA 60.244 43.478 0.00 0.00 0.00 3.08
68 69 2.154462 CGGAGCAAAATGAGTGAACCT 58.846 47.619 0.00 0.00 0.00 3.50
69 70 1.880027 ACGGAGCAAAATGAGTGAACC 59.120 47.619 0.00 0.00 0.00 3.62
70 71 4.154195 ACATACGGAGCAAAATGAGTGAAC 59.846 41.667 0.00 0.00 0.00 3.18
71 72 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
72 73 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
73 74 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
74 75 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
75 76 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
76 77 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
77 78 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
78 79 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
79 80 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
80 81 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
81 82 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
82 83 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
83 84 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
84 85 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
85 86 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
86 87 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
87 88 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
88 89 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
89 90 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
90 91 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
91 92 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
92 93 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
93 94 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
94 95 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
95 96 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
96 97 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
97 98 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
98 99 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
99 100 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
100 101 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
101 102 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
102 103 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
103 104 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
104 105 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
107 108 9.959721 TCTTAAATACTTGTCTTTCTAGGCATT 57.040 29.630 0.00 0.00 35.56 3.56
108 109 9.959721 TTCTTAAATACTTGTCTTTCTAGGCAT 57.040 29.630 0.00 0.00 35.56 4.40
109 110 9.216117 GTTCTTAAATACTTGTCTTTCTAGGCA 57.784 33.333 0.00 0.00 33.22 4.75
110 111 8.381387 CGTTCTTAAATACTTGTCTTTCTAGGC 58.619 37.037 0.00 0.00 0.00 3.93
111 112 8.870879 CCGTTCTTAAATACTTGTCTTTCTAGG 58.129 37.037 0.00 0.00 0.00 3.02
112 113 9.635520 TCCGTTCTTAAATACTTGTCTTTCTAG 57.364 33.333 0.00 0.00 0.00 2.43
113 114 9.635520 CTCCGTTCTTAAATACTTGTCTTTCTA 57.364 33.333 0.00 0.00 0.00 2.10
114 115 7.603024 CCTCCGTTCTTAAATACTTGTCTTTCT 59.397 37.037 0.00 0.00 0.00 2.52
115 116 7.148457 CCCTCCGTTCTTAAATACTTGTCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
116 117 6.653740 CCCTCCGTTCTTAAATACTTGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
117 118 6.013984 TCCCTCCGTTCTTAAATACTTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
118 119 5.482878 TCCCTCCGTTCTTAAATACTTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
119 120 5.727434 TCCCTCCGTTCTTAAATACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
120 121 5.247792 ACTCCCTCCGTTCTTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
121 122 5.731591 ACTCCCTCCGTTCTTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
122 123 6.894103 TCTACTCCCTCCGTTCTTAAATACTT 59.106 38.462 0.00 0.00 0.00 2.24
123 124 6.430007 TCTACTCCCTCCGTTCTTAAATACT 58.570 40.000 0.00 0.00 0.00 2.12
124 125 6.705863 TCTACTCCCTCCGTTCTTAAATAC 57.294 41.667 0.00 0.00 0.00 1.89
125 126 7.067981 GTCTTCTACTCCCTCCGTTCTTAAATA 59.932 40.741 0.00 0.00 0.00 1.40
126 127 5.956563 TCTTCTACTCCCTCCGTTCTTAAAT 59.043 40.000 0.00 0.00 0.00 1.40
127 128 5.184671 GTCTTCTACTCCCTCCGTTCTTAAA 59.815 44.000 0.00 0.00 0.00 1.52
128 129 4.704057 GTCTTCTACTCCCTCCGTTCTTAA 59.296 45.833 0.00 0.00 0.00 1.85
129 130 4.263639 TGTCTTCTACTCCCTCCGTTCTTA 60.264 45.833 0.00 0.00 0.00 2.10
130 131 3.090790 GTCTTCTACTCCCTCCGTTCTT 58.909 50.000 0.00 0.00 0.00 2.52
131 132 2.041350 TGTCTTCTACTCCCTCCGTTCT 59.959 50.000 0.00 0.00 0.00 3.01
132 133 2.444421 TGTCTTCTACTCCCTCCGTTC 58.556 52.381 0.00 0.00 0.00 3.95
133 134 2.599408 TGTCTTCTACTCCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
134 135 2.599408 TTGTCTTCTACTCCCTCCGT 57.401 50.000 0.00 0.00 0.00 4.69
135 136 4.473477 AAATTGTCTTCTACTCCCTCCG 57.527 45.455 0.00 0.00 0.00 4.63
168 169 2.691526 TCGTAAATCAGGCGGTGATAGT 59.308 45.455 0.89 0.00 45.89 2.12
176 177 2.285083 TGGGAAATCGTAAATCAGGCG 58.715 47.619 0.00 0.00 0.00 5.52
177 178 3.279434 ACTGGGAAATCGTAAATCAGGC 58.721 45.455 0.00 0.00 0.00 4.85
188 189 6.605471 AAGGGAAATGTTAACTGGGAAATC 57.395 37.500 7.22 0.00 0.00 2.17
192 193 6.616577 ACTTTAAGGGAAATGTTAACTGGGA 58.383 36.000 7.22 0.00 0.00 4.37
212 213 4.352009 TGCCATCACCAAATCCATACTTT 58.648 39.130 0.00 0.00 0.00 2.66
214 215 3.668141 TGCCATCACCAAATCCATACT 57.332 42.857 0.00 0.00 0.00 2.12
234 235 3.258872 TGCCTAAATTGCTGCTCACAATT 59.741 39.130 0.00 6.40 46.85 2.32
263 264 4.756642 TGGAATCGCCATCATCAAATCTAC 59.243 41.667 0.00 0.00 43.33 2.59
264 265 4.971939 TGGAATCGCCATCATCAAATCTA 58.028 39.130 0.00 0.00 43.33 1.98
285 286 3.430895 GCAATGCTTGAACTGGATGTTTG 59.569 43.478 0.00 0.00 39.30 2.93
286 287 3.555586 GGCAATGCTTGAACTGGATGTTT 60.556 43.478 4.82 0.00 39.30 2.83
403 443 6.702329 AGGATCTATCTTCGTTTTCACTGTT 58.298 36.000 0.00 0.00 0.00 3.16
407 447 8.475331 TTTGTAGGATCTATCTTCGTTTTCAC 57.525 34.615 0.00 0.00 0.00 3.18
408 448 9.496873 TTTTTGTAGGATCTATCTTCGTTTTCA 57.503 29.630 0.00 0.00 0.00 2.69
513 600 5.509670 GCTTGGGCTACATCATAAATTTCCC 60.510 44.000 0.00 0.00 35.22 3.97
521 608 1.202806 GGCTGCTTGGGCTACATCATA 60.203 52.381 0.00 0.00 39.59 2.15
525 612 0.040204 AAAGGCTGCTTGGGCTACAT 59.960 50.000 0.00 0.00 41.31 2.29
528 615 1.000896 GGAAAGGCTGCTTGGGCTA 60.001 57.895 0.00 0.00 41.31 3.93
541 628 3.185391 GCTCTGTTCTCGAAACAGGAAAG 59.815 47.826 26.05 20.52 45.66 2.62
543 630 2.548067 GGCTCTGTTCTCGAAACAGGAA 60.548 50.000 26.05 15.20 45.66 3.36
545 632 1.433534 GGCTCTGTTCTCGAAACAGG 58.566 55.000 26.05 20.61 45.66 4.00
546 633 1.270305 TGGGCTCTGTTCTCGAAACAG 60.270 52.381 23.24 23.24 46.67 3.16
566 654 0.698818 ACATTCGGAGGGCCTCTTTT 59.301 50.000 31.39 12.53 0.00 2.27
567 655 0.698818 AACATTCGGAGGGCCTCTTT 59.301 50.000 31.39 12.19 0.00 2.52
570 658 0.035439 TGAAACATTCGGAGGGCCTC 60.035 55.000 25.80 25.80 0.00 4.70
620 708 1.440618 TGGTGGGCTTCTTCTACCAA 58.559 50.000 0.00 0.00 38.39 3.67
623 711 2.170607 TGCTATGGTGGGCTTCTTCTAC 59.829 50.000 0.00 0.00 0.00 2.59
640 728 1.340600 CCCGGGGATTGAAAAGTGCTA 60.341 52.381 14.71 0.00 0.00 3.49
641 729 0.611896 CCCGGGGATTGAAAAGTGCT 60.612 55.000 14.71 0.00 0.00 4.40
770 858 1.682684 GACGCTGGAGAAGGGGAGA 60.683 63.158 0.00 0.00 43.07 3.71
771 859 2.896443 GACGCTGGAGAAGGGGAG 59.104 66.667 0.00 0.00 43.07 4.30
774 862 2.356818 GATCCGACGCTGGAGAAGGG 62.357 65.000 2.46 0.00 42.45 3.95
789 877 1.720077 GGGTGGGGAATGGGAGATCC 61.720 65.000 0.00 0.00 34.85 3.36
848 937 2.042843 GCGGAGGGGAGAGAAGGA 60.043 66.667 0.00 0.00 0.00 3.36
882 971 1.176838 CACCTTATAAAAACGCGCGC 58.823 50.000 32.58 23.91 0.00 6.86
883 972 1.176838 GCACCTTATAAAAACGCGCG 58.823 50.000 30.96 30.96 0.00 6.86
933 1044 4.812476 TGGATTCGTCAGGGCGCG 62.812 66.667 0.00 0.00 0.00 6.86
949 1060 2.008268 GCAAATCGGGTCAGGCCATG 62.008 60.000 5.01 0.00 39.65 3.66
950 1061 1.754234 GCAAATCGGGTCAGGCCAT 60.754 57.895 5.01 0.00 39.65 4.40
951 1062 2.361104 GCAAATCGGGTCAGGCCA 60.361 61.111 5.01 0.00 39.65 5.36
952 1063 2.044946 AGCAAATCGGGTCAGGCC 60.045 61.111 0.00 0.00 0.00 5.19
953 1064 3.502572 GAGCAAATCGGGTCAGGC 58.497 61.111 0.00 0.00 35.43 4.85
1005 1116 4.477975 CTCCCGCTGTCGTCGTCC 62.478 72.222 0.00 0.00 0.00 4.79
1252 1373 1.301479 GGCCGAGTTCGTTCAAGGT 60.301 57.895 0.48 0.00 37.74 3.50
1256 1377 4.367023 CCCGGCCGAGTTCGTTCA 62.367 66.667 30.73 0.00 37.74 3.18
1274 1395 1.395826 CCGGCCCAAGACAAAACCAA 61.396 55.000 0.00 0.00 0.00 3.67
1284 1405 1.966451 GTCACAACTCCGGCCCAAG 60.966 63.158 0.00 0.00 0.00 3.61
1286 1407 1.990160 AAAGTCACAACTCCGGCCCA 61.990 55.000 0.00 0.00 33.48 5.36
1287 1408 0.822121 AAAAGTCACAACTCCGGCCC 60.822 55.000 0.00 0.00 33.48 5.80
1330 1458 3.052082 CACTTGTCGCTGGCCCTG 61.052 66.667 0.00 0.00 0.00 4.45
1482 1610 5.356882 TTGTCATTTGTACTAACAGCAGC 57.643 39.130 0.00 0.00 36.83 5.25
1510 1642 6.655003 GGTGAGATGGAGATACAAAACAAGAA 59.345 38.462 0.00 0.00 0.00 2.52
1618 1751 3.951037 AGCATGCCGATGGTATTACAAAA 59.049 39.130 15.66 0.00 38.56 2.44
1619 1752 3.550820 AGCATGCCGATGGTATTACAAA 58.449 40.909 15.66 0.00 38.56 2.83
1620 1753 3.207265 AGCATGCCGATGGTATTACAA 57.793 42.857 15.66 0.00 38.56 2.41
1621 1754 2.928801 AGCATGCCGATGGTATTACA 57.071 45.000 15.66 0.00 38.56 2.41
1626 1759 3.701205 ATCAATAGCATGCCGATGGTA 57.299 42.857 15.66 0.00 44.59 3.25
1627 1760 2.574006 ATCAATAGCATGCCGATGGT 57.426 45.000 15.66 3.94 42.93 3.55
1628 1761 2.815503 TGAATCAATAGCATGCCGATGG 59.184 45.455 15.66 6.14 0.00 3.51
1629 1762 3.501062 AGTGAATCAATAGCATGCCGATG 59.499 43.478 15.66 10.90 0.00 3.84
1630 1763 3.501062 CAGTGAATCAATAGCATGCCGAT 59.499 43.478 15.66 8.82 0.00 4.18
1631 1764 2.874086 CAGTGAATCAATAGCATGCCGA 59.126 45.455 15.66 6.62 0.00 5.54
1632 1765 2.874086 TCAGTGAATCAATAGCATGCCG 59.126 45.455 15.66 0.36 0.00 5.69
1633 1766 4.906065 TTCAGTGAATCAATAGCATGCC 57.094 40.909 15.66 0.00 0.00 4.40
1634 1767 7.766219 AAATTTCAGTGAATCAATAGCATGC 57.234 32.000 10.51 10.51 0.00 4.06
1712 1846 1.532604 GCCAGGGGTACTTTTGTGGC 61.533 60.000 8.71 8.71 43.43 5.01
1722 1856 2.375345 GCCTAAGCAGCCAGGGGTA 61.375 63.158 11.75 0.00 39.53 3.69
1723 1857 3.732849 GCCTAAGCAGCCAGGGGT 61.733 66.667 11.75 0.00 39.53 4.95
1733 1871 2.605580 GCTCAAATTATGCGGCCTAAGC 60.606 50.000 0.00 0.00 38.76 3.09
1756 1908 7.830848 ACTATATACCTGATTAAAGGGCCAT 57.169 36.000 6.18 0.00 42.11 4.40
1843 1995 4.772100 AGAATGTGGGTTTTATTCAGGTGG 59.228 41.667 0.00 0.00 34.18 4.61
1860 2012 8.906867 CATGGTATATGAAACTGGAAAGAATGT 58.093 33.333 0.00 0.00 0.00 2.71
1864 2016 9.177608 CTTTCATGGTATATGAAACTGGAAAGA 57.822 33.333 10.14 0.00 41.46 2.52
2088 2245 6.970043 CAGGAAAGTAATAGACAAGAGAGTCG 59.030 42.308 0.00 0.00 43.24 4.18
2299 2457 4.235731 CCATCCCTTGGGCGTAAC 57.764 61.111 0.00 0.00 42.33 2.50
2354 2512 8.668510 ATCAAAGTATAGAGTTGTAATGGCAG 57.331 34.615 0.00 0.00 0.00 4.85
2376 2534 9.013229 ACTGTATCATGTTTAGCTTCAAAATCA 57.987 29.630 0.00 0.00 0.00 2.57
2557 2715 6.426328 GTCTCTGAATTTGCCTCACATATAGG 59.574 42.308 0.00 0.00 37.17 2.57
2558 2716 6.988580 TGTCTCTGAATTTGCCTCACATATAG 59.011 38.462 0.00 0.00 0.00 1.31
2682 2850 3.189618 TCTGCTATGATTCAGCACAGG 57.810 47.619 10.80 0.00 43.90 4.00
2865 3037 3.503827 TGCACGTACCATAAGAGTCAG 57.496 47.619 0.00 0.00 0.00 3.51
2887 3059 9.249053 AGAAACACATTCTAGAGATTCTAGTGA 57.751 33.333 11.67 4.46 46.65 3.41
2908 3080 8.397906 TCATACAATTCGATCCATCAAAGAAAC 58.602 33.333 0.00 0.00 0.00 2.78
2921 3093 6.212388 AGCTAGGGATTCTCATACAATTCGAT 59.788 38.462 0.00 0.00 0.00 3.59
2949 3121 3.804036 CGGGCCATGTTTCTCAAGTATA 58.196 45.455 4.39 0.00 0.00 1.47
3009 3181 3.071312 ACGTAACCATACTGAAACCCACA 59.929 43.478 0.00 0.00 0.00 4.17
3010 3182 3.434299 CACGTAACCATACTGAAACCCAC 59.566 47.826 0.00 0.00 0.00 4.61
3029 3201 5.629020 CCAATGTAGGTTGAACAATTTCACG 59.371 40.000 0.00 0.00 41.64 4.35
3101 3273 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
3102 3274 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
3103 3275 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
3104 3276 8.122952 CCTTATATGCAGACTAAAAAGAAACGG 58.877 37.037 0.00 0.00 0.00 4.44
3105 3277 8.665685 ACCTTATATGCAGACTAAAAAGAAACG 58.334 33.333 0.00 0.00 0.00 3.60
3109 3281 8.956426 CCAAACCTTATATGCAGACTAAAAAGA 58.044 33.333 0.00 0.00 0.00 2.52
3110 3282 8.739972 ACCAAACCTTATATGCAGACTAAAAAG 58.260 33.333 0.00 0.00 0.00 2.27
3111 3283 8.644374 ACCAAACCTTATATGCAGACTAAAAA 57.356 30.769 0.00 0.00 0.00 1.94
3112 3284 7.885922 TGACCAAACCTTATATGCAGACTAAAA 59.114 33.333 0.00 0.00 0.00 1.52
3113 3285 7.398829 TGACCAAACCTTATATGCAGACTAAA 58.601 34.615 0.00 0.00 0.00 1.85
3114 3286 6.953101 TGACCAAACCTTATATGCAGACTAA 58.047 36.000 0.00 0.00 0.00 2.24
3115 3287 6.553953 TGACCAAACCTTATATGCAGACTA 57.446 37.500 0.00 0.00 0.00 2.59
3116 3288 5.435686 TGACCAAACCTTATATGCAGACT 57.564 39.130 0.00 0.00 0.00 3.24
3117 3289 6.151144 ACTTTGACCAAACCTTATATGCAGAC 59.849 38.462 0.00 0.00 0.00 3.51
3118 3290 6.245408 ACTTTGACCAAACCTTATATGCAGA 58.755 36.000 0.00 0.00 0.00 4.26
3119 3291 6.150976 TGACTTTGACCAAACCTTATATGCAG 59.849 38.462 0.00 0.00 0.00 4.41
3120 3292 6.007076 TGACTTTGACCAAACCTTATATGCA 58.993 36.000 0.00 0.00 0.00 3.96
3121 3293 6.509418 TGACTTTGACCAAACCTTATATGC 57.491 37.500 0.00 0.00 0.00 3.14
3122 3294 7.029563 GCTTGACTTTGACCAAACCTTATATG 58.970 38.462 0.00 0.00 0.00 1.78
3123 3295 6.948309 AGCTTGACTTTGACCAAACCTTATAT 59.052 34.615 0.00 0.00 0.00 0.86
3124 3296 6.303839 AGCTTGACTTTGACCAAACCTTATA 58.696 36.000 0.00 0.00 0.00 0.98
3125 3297 5.140454 AGCTTGACTTTGACCAAACCTTAT 58.860 37.500 0.00 0.00 0.00 1.73
3126 3298 4.532834 AGCTTGACTTTGACCAAACCTTA 58.467 39.130 0.00 0.00 0.00 2.69
3127 3299 3.365472 AGCTTGACTTTGACCAAACCTT 58.635 40.909 0.00 0.00 0.00 3.50
3128 3300 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
3129 3301 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
3142 3314 8.276252 AGTTAGTCAAACTTTACAAAGCTTGA 57.724 30.769 13.75 13.75 46.61 3.02
3197 3369 9.304335 TGGTGCATCTGATAATATTGATTTCAT 57.696 29.630 0.00 0.00 0.00 2.57
3198 3370 8.570488 GTGGTGCATCTGATAATATTGATTTCA 58.430 33.333 0.00 0.00 0.00 2.69
3199 3371 8.570488 TGTGGTGCATCTGATAATATTGATTTC 58.430 33.333 0.00 0.00 0.00 2.17
3200 3372 8.467963 TGTGGTGCATCTGATAATATTGATTT 57.532 30.769 0.00 0.00 0.00 2.17
3201 3373 8.467963 TTGTGGTGCATCTGATAATATTGATT 57.532 30.769 0.00 0.00 0.00 2.57
3202 3374 8.467963 TTTGTGGTGCATCTGATAATATTGAT 57.532 30.769 0.00 0.00 0.00 2.57
3203 3375 7.878547 TTTGTGGTGCATCTGATAATATTGA 57.121 32.000 0.00 0.00 0.00 2.57
3204 3376 8.974408 CATTTTGTGGTGCATCTGATAATATTG 58.026 33.333 0.00 0.00 0.00 1.90
3205 3377 8.698210 ACATTTTGTGGTGCATCTGATAATATT 58.302 29.630 0.00 0.00 0.00 1.28
3206 3378 8.241497 ACATTTTGTGGTGCATCTGATAATAT 57.759 30.769 0.00 0.00 0.00 1.28
3207 3379 7.643569 ACATTTTGTGGTGCATCTGATAATA 57.356 32.000 0.00 0.00 0.00 0.98
3208 3380 6.534475 ACATTTTGTGGTGCATCTGATAAT 57.466 33.333 0.00 0.00 0.00 1.28
3209 3381 5.981088 ACATTTTGTGGTGCATCTGATAA 57.019 34.783 0.00 0.00 0.00 1.75
3210 3382 7.643569 AATACATTTTGTGGTGCATCTGATA 57.356 32.000 0.00 0.00 0.00 2.15
3211 3383 6.534475 AATACATTTTGTGGTGCATCTGAT 57.466 33.333 0.00 0.00 0.00 2.90
3212 3384 5.981088 AATACATTTTGTGGTGCATCTGA 57.019 34.783 0.00 0.00 0.00 3.27
3213 3385 6.645827 TGAAAATACATTTTGTGGTGCATCTG 59.354 34.615 4.70 0.00 39.86 2.90
3214 3386 6.757237 TGAAAATACATTTTGTGGTGCATCT 58.243 32.000 4.70 0.00 39.86 2.90
3215 3387 7.599630 ATGAAAATACATTTTGTGGTGCATC 57.400 32.000 4.70 0.00 39.86 3.91
3216 3388 8.313292 AGTATGAAAATACATTTTGTGGTGCAT 58.687 29.630 4.70 4.18 39.86 3.96
3217 3389 7.665690 AGTATGAAAATACATTTTGTGGTGCA 58.334 30.769 4.70 0.00 39.86 4.57
3218 3390 9.801873 ATAGTATGAAAATACATTTTGTGGTGC 57.198 29.630 4.70 0.00 39.86 5.01
3294 3466 6.207810 TGGTCAAAGTCAAACTACACAAAGTT 59.792 34.615 0.00 0.00 41.46 2.66
3295 3467 5.708230 TGGTCAAAGTCAAACTACACAAAGT 59.292 36.000 0.00 0.00 0.00 2.66
3296 3468 6.189677 TGGTCAAAGTCAAACTACACAAAG 57.810 37.500 0.00 0.00 0.00 2.77
3297 3469 6.576662 TTGGTCAAAGTCAAACTACACAAA 57.423 33.333 0.00 0.00 0.00 2.83
3298 3470 6.576662 TTTGGTCAAAGTCAAACTACACAA 57.423 33.333 0.00 0.00 0.00 3.33
3299 3471 6.601613 AGATTTGGTCAAAGTCAAACTACACA 59.398 34.615 2.55 0.00 35.97 3.72
3300 3472 7.027778 AGATTTGGTCAAAGTCAAACTACAC 57.972 36.000 2.55 0.00 35.97 2.90
3301 3473 7.639113 AAGATTTGGTCAAAGTCAAACTACA 57.361 32.000 2.55 0.00 35.97 2.74
3305 3477 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
3306 3478 7.967854 CGCATATAAGATTTGGTCAAAGTCAAA 59.032 33.333 2.55 0.00 37.29 2.69
3307 3479 7.415095 CCGCATATAAGATTTGGTCAAAGTCAA 60.415 37.037 2.55 0.00 33.32 3.18
3308 3480 6.038161 CCGCATATAAGATTTGGTCAAAGTCA 59.962 38.462 2.55 0.00 33.32 3.41
3309 3481 6.260050 TCCGCATATAAGATTTGGTCAAAGTC 59.740 38.462 2.55 1.51 33.32 3.01
3310 3482 6.119536 TCCGCATATAAGATTTGGTCAAAGT 58.880 36.000 2.55 0.00 33.32 2.66
3311 3483 6.260936 ACTCCGCATATAAGATTTGGTCAAAG 59.739 38.462 2.55 0.00 33.32 2.77
3312 3484 6.119536 ACTCCGCATATAAGATTTGGTCAAA 58.880 36.000 0.00 0.00 34.46 2.69
3313 3485 5.680619 ACTCCGCATATAAGATTTGGTCAA 58.319 37.500 0.00 0.00 0.00 3.18
3314 3486 5.290493 ACTCCGCATATAAGATTTGGTCA 57.710 39.130 0.00 0.00 0.00 4.02
3315 3487 7.724305 TTTACTCCGCATATAAGATTTGGTC 57.276 36.000 0.00 0.00 0.00 4.02
3316 3488 8.514330 TTTTTACTCCGCATATAAGATTTGGT 57.486 30.769 0.00 0.00 0.00 3.67
3317 3489 8.836413 TCTTTTTACTCCGCATATAAGATTTGG 58.164 33.333 0.00 0.00 0.00 3.28
3321 3493 8.548721 CGTTTCTTTTTACTCCGCATATAAGAT 58.451 33.333 0.00 0.00 0.00 2.40
3322 3494 7.010738 CCGTTTCTTTTTACTCCGCATATAAGA 59.989 37.037 0.00 0.00 0.00 2.10
3323 3495 7.010738 TCCGTTTCTTTTTACTCCGCATATAAG 59.989 37.037 0.00 0.00 0.00 1.73
3324 3496 6.817641 TCCGTTTCTTTTTACTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
3325 3497 6.339730 TCCGTTTCTTTTTACTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
3326 3498 5.180271 TCCGTTTCTTTTTACTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
3327 3499 4.567971 TCCGTTTCTTTTTACTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
3328 3500 3.404899 TCCGTTTCTTTTTACTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
3329 3501 2.803956 CTCCGTTTCTTTTTACTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
3330 3502 2.159037 CCTCCGTTTCTTTTTACTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
3331 3503 2.740447 CCCTCCGTTTCTTTTTACTCCG 59.260 50.000 0.00 0.00 0.00 4.63
3332 3504 4.001652 CTCCCTCCGTTTCTTTTTACTCC 58.998 47.826 0.00 0.00 0.00 3.85
3333 3505 4.639334 ACTCCCTCCGTTTCTTTTTACTC 58.361 43.478 0.00 0.00 0.00 2.59
3334 3506 4.701651 ACTCCCTCCGTTTCTTTTTACT 57.298 40.909 0.00 0.00 0.00 2.24
3335 3507 5.545588 AGTACTCCCTCCGTTTCTTTTTAC 58.454 41.667 0.00 0.00 0.00 2.01
3336 3508 5.541484 AGAGTACTCCCTCCGTTTCTTTTTA 59.459 40.000 19.38 0.00 31.53 1.52
3337 3509 4.347292 AGAGTACTCCCTCCGTTTCTTTTT 59.653 41.667 19.38 0.00 31.53 1.94
3338 3510 3.902467 AGAGTACTCCCTCCGTTTCTTTT 59.098 43.478 19.38 0.00 31.53 2.27
3339 3511 3.508426 AGAGTACTCCCTCCGTTTCTTT 58.492 45.455 19.38 0.00 31.53 2.52
3340 3512 3.172471 AGAGTACTCCCTCCGTTTCTT 57.828 47.619 19.38 0.00 31.53 2.52
3341 3513 2.903375 AGAGTACTCCCTCCGTTTCT 57.097 50.000 19.38 0.00 31.53 2.52
3342 3514 6.897706 ATTATAGAGTACTCCCTCCGTTTC 57.102 41.667 19.38 0.00 31.53 2.78
3343 3515 7.525165 ACTATTATAGAGTACTCCCTCCGTTT 58.475 38.462 19.38 0.74 31.53 3.60
3344 3516 7.089106 ACTATTATAGAGTACTCCCTCCGTT 57.911 40.000 19.38 1.50 31.53 4.44
3345 3517 6.700845 ACTATTATAGAGTACTCCCTCCGT 57.299 41.667 19.38 2.25 31.53 4.69
3346 3518 7.575343 GCAAACTATTATAGAGTACTCCCTCCG 60.575 44.444 19.38 5.16 31.53 4.63
3347 3519 7.232941 TGCAAACTATTATAGAGTACTCCCTCC 59.767 40.741 19.38 0.00 31.53 4.30
3348 3520 8.083462 GTGCAAACTATTATAGAGTACTCCCTC 58.917 40.741 19.38 0.00 0.00 4.30
3349 3521 7.563924 TGTGCAAACTATTATAGAGTACTCCCT 59.436 37.037 19.38 9.43 0.00 4.20
3350 3522 7.723324 TGTGCAAACTATTATAGAGTACTCCC 58.277 38.462 19.38 0.00 0.00 4.30
3351 3523 9.595823 TTTGTGCAAACTATTATAGAGTACTCC 57.404 33.333 19.38 1.81 0.00 3.85
3354 3526 9.685005 CGTTTTGTGCAAACTATTATAGAGTAC 57.315 33.333 6.21 5.97 42.51 2.73
3355 3527 8.385111 GCGTTTTGTGCAAACTATTATAGAGTA 58.615 33.333 6.21 0.00 42.51 2.59
3356 3528 7.094975 TGCGTTTTGTGCAAACTATTATAGAGT 60.095 33.333 6.21 0.00 42.51 3.24
3357 3529 7.240674 TGCGTTTTGTGCAAACTATTATAGAG 58.759 34.615 6.21 0.00 42.51 2.43
3358 3530 7.135089 TGCGTTTTGTGCAAACTATTATAGA 57.865 32.000 6.21 0.00 42.51 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.