Multiple sequence alignment - TraesCS3A01G352200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G352200 chr3A 100.000 5047 0 0 1 5047 600320906 600315860 0.000000e+00 9321.0
1 TraesCS3A01G352200 chr3A 83.271 269 28 14 1081 1342 549265047 549265305 1.090000e-56 231.0
2 TraesCS3A01G352200 chr3D 90.206 1848 119 29 1434 3245 457406013 457404192 0.000000e+00 2353.0
3 TraesCS3A01G352200 chr3D 86.957 1403 64 42 3 1387 457407402 457406101 0.000000e+00 1467.0
4 TraesCS3A01G352200 chr3D 89.933 894 60 13 3423 4294 457403943 457403058 0.000000e+00 1125.0
5 TraesCS3A01G352200 chr3D 91.582 594 29 4 4468 5047 457402928 457402342 0.000000e+00 800.0
6 TraesCS3A01G352200 chr3D 94.681 188 10 0 3237 3424 457404160 457403973 4.940000e-75 292.0
7 TraesCS3A01G352200 chr3D 82.143 280 33 14 1087 1359 94721511 94721242 1.830000e-54 224.0
8 TraesCS3A01G352200 chr3D 90.351 114 7 2 4375 4484 457403059 457402946 4.070000e-31 147.0
9 TraesCS3A01G352200 chr3D 96.471 85 2 1 4293 4376 279927710 279927794 6.810000e-29 139.0
10 TraesCS3A01G352200 chr3D 94.872 39 1 1 1229 1267 549490356 549490393 5.460000e-05 60.2
11 TraesCS3A01G352200 chr3B 94.404 1376 66 7 2055 3424 605016252 605014882 0.000000e+00 2104.0
12 TraesCS3A01G352200 chr3B 87.325 1357 81 47 64 1399 605018331 605017045 0.000000e+00 1469.0
13 TraesCS3A01G352200 chr3B 86.860 898 87 17 3423 4294 605014853 605013961 0.000000e+00 976.0
14 TraesCS3A01G352200 chr3B 89.635 685 45 5 4375 5047 605013962 605013292 0.000000e+00 848.0
15 TraesCS3A01G352200 chr3B 84.882 635 55 15 1434 2049 605016971 605016359 2.010000e-168 603.0
16 TraesCS3A01G352200 chr3B 82.900 269 29 14 1081 1342 145362453 145362711 5.080000e-55 226.0
17 TraesCS3A01G352200 chr7B 95.506 89 2 2 4290 4376 443080823 443080911 1.890000e-29 141.0
18 TraesCS3A01G352200 chr5A 76.680 253 54 4 1081 1332 458525109 458524861 8.810000e-28 135.0
19 TraesCS3A01G352200 chr6A 94.186 86 4 1 4292 4376 457397515 457397430 4.100000e-26 130.0
20 TraesCS3A01G352200 chr4B 90.625 96 5 2 4285 4376 660583552 660583457 1.910000e-24 124.0
21 TraesCS3A01G352200 chr7A 91.765 85 7 0 4292 4376 50004225 50004309 8.880000e-23 119.0
22 TraesCS3A01G352200 chr1D 75.926 270 43 17 1102 1363 72906880 72906625 8.880000e-23 119.0
23 TraesCS3A01G352200 chr1D 76.555 209 30 16 1105 1307 73054355 73054160 4.160000e-16 97.1
24 TraesCS3A01G352200 chr2D 90.698 86 6 2 4293 4376 545944762 545944847 4.130000e-21 113.0
25 TraesCS3A01G352200 chr4A 89.773 88 8 1 4290 4376 318044418 318044505 1.490000e-20 111.0
26 TraesCS3A01G352200 chr6D 86.000 100 11 3 4278 4376 414526270 414526173 2.490000e-18 104.0
27 TraesCS3A01G352200 chr2B 87.234 94 9 3 4285 4376 210826729 210826637 2.490000e-18 104.0
28 TraesCS3A01G352200 chr5B 75.000 228 46 10 1136 1359 421861495 421861275 1.500000e-15 95.3
29 TraesCS3A01G352200 chr5D 88.136 59 6 1 1431 1488 357080045 357079987 9.070000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G352200 chr3A 600315860 600320906 5046 True 9321.000000 9321 100.000000 1 5047 1 chr3A.!!$R1 5046
1 TraesCS3A01G352200 chr3D 457402342 457407402 5060 True 1030.666667 2353 90.618333 3 5047 6 chr3D.!!$R2 5044
2 TraesCS3A01G352200 chr3B 605013292 605018331 5039 True 1200.000000 2104 88.621200 64 5047 5 chr3B.!!$R1 4983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 842 0.027907 TAGCTCCTCCCCTCCTCCTA 60.028 60.0 0.0 0.0 0.00 2.94 F
1414 1439 0.033920 TTCAGTCAGCAGCGTCACAT 59.966 50.0 0.0 0.0 0.00 3.21 F
1415 1440 0.033920 TCAGTCAGCAGCGTCACATT 59.966 50.0 0.0 0.0 0.00 2.71 F
1695 1765 0.043940 ACTGGCTGGAGAGATTCCCT 59.956 55.0 0.0 0.0 46.19 4.20 F
2439 2641 0.251077 GGATTCTATGGGCAGGCAGG 60.251 60.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2602 2805 0.256177 GGACCAATTGGACCCTCCTC 59.744 60.000 31.22 15.21 42.93 3.71 R
2856 3065 3.818961 AAGCATCACGTTTCATGTCAG 57.181 42.857 0.00 0.00 0.00 3.51 R
3339 3588 7.025620 ACCTGAATACCCATATCTTGATACCT 58.974 38.462 0.00 0.00 0.00 3.08 R
3485 3765 0.239347 GTCAGCCATGCAGAACACAC 59.761 55.000 0.00 0.00 0.00 3.82 R
4356 4661 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 50 2.742372 CCCCTTTCGTCCACAGCG 60.742 66.667 0.00 0.00 0.00 5.18
161 165 2.185350 CCGCCACTGCCAGTCTAG 59.815 66.667 0.00 0.00 0.00 2.43
373 381 2.608090 GCACCGCACCTAATTTAGTCTC 59.392 50.000 2.88 0.00 0.00 3.36
382 390 5.062308 CACCTAATTTAGTCTCGCAAGTCAC 59.938 44.000 2.88 0.00 39.48 3.67
386 394 0.888619 TAGTCTCGCAAGTCACCCAG 59.111 55.000 0.00 0.00 39.48 4.45
387 395 2.029844 GTCTCGCAAGTCACCCAGC 61.030 63.158 0.00 0.00 39.48 4.85
388 396 2.743928 CTCGCAAGTCACCCAGCC 60.744 66.667 0.00 0.00 39.48 4.85
389 397 4.329545 TCGCAAGTCACCCAGCCC 62.330 66.667 0.00 0.00 39.48 5.19
390 398 4.641645 CGCAAGTCACCCAGCCCA 62.642 66.667 0.00 0.00 0.00 5.36
391 399 2.674380 GCAAGTCACCCAGCCCAG 60.674 66.667 0.00 0.00 0.00 4.45
433 441 2.287668 CCAAGTACACGATCCGATCCTC 60.288 54.545 2.69 0.00 0.00 3.71
434 442 1.606903 AGTACACGATCCGATCCTCC 58.393 55.000 2.69 0.00 0.00 4.30
435 443 1.143277 AGTACACGATCCGATCCTCCT 59.857 52.381 2.69 0.00 0.00 3.69
497 505 2.052414 GCAGCTCAATCATCGCGC 60.052 61.111 0.00 0.00 0.00 6.86
499 507 1.886313 CAGCTCAATCATCGCGCCT 60.886 57.895 0.00 0.00 0.00 5.52
505 513 2.182842 AATCATCGCGCCTCCAAGC 61.183 57.895 0.00 0.00 0.00 4.01
516 524 1.009829 CCTCCAAGCGGAAAATCTCG 58.990 55.000 0.00 0.00 42.21 4.04
586 601 3.753434 CGCGCTGGTCAGAGGAGT 61.753 66.667 5.56 0.00 0.00 3.85
599 614 2.100584 CAGAGGAGTCGAATGAGAAGGG 59.899 54.545 0.00 0.00 0.00 3.95
601 616 2.761208 GAGGAGTCGAATGAGAAGGGAA 59.239 50.000 0.00 0.00 0.00 3.97
602 617 3.379452 AGGAGTCGAATGAGAAGGGAAT 58.621 45.455 0.00 0.00 0.00 3.01
603 618 3.133721 AGGAGTCGAATGAGAAGGGAATG 59.866 47.826 0.00 0.00 0.00 2.67
604 619 3.118592 GGAGTCGAATGAGAAGGGAATGT 60.119 47.826 0.00 0.00 0.00 2.71
605 620 3.866651 AGTCGAATGAGAAGGGAATGTG 58.133 45.455 0.00 0.00 0.00 3.21
606 621 3.515502 AGTCGAATGAGAAGGGAATGTGA 59.484 43.478 0.00 0.00 0.00 3.58
607 622 3.619038 GTCGAATGAGAAGGGAATGTGAC 59.381 47.826 0.00 0.00 0.00 3.67
608 623 2.604914 CGAATGAGAAGGGAATGTGACG 59.395 50.000 0.00 0.00 0.00 4.35
609 624 3.676049 CGAATGAGAAGGGAATGTGACGA 60.676 47.826 0.00 0.00 0.00 4.20
612 627 2.897326 TGAGAAGGGAATGTGACGAGAA 59.103 45.455 0.00 0.00 0.00 2.87
629 644 1.064017 AGAAGAGATCGGCTGTCCTCT 60.064 52.381 11.78 11.78 37.58 3.69
630 645 1.336755 GAAGAGATCGGCTGTCCTCTC 59.663 57.143 15.99 13.93 35.16 3.20
632 647 0.753479 GAGATCGGCTGTCCTCTCCA 60.753 60.000 9.84 0.00 31.09 3.86
633 648 0.105760 AGATCGGCTGTCCTCTCCAT 60.106 55.000 0.00 0.00 0.00 3.41
635 650 0.105760 ATCGGCTGTCCTCTCCATCT 60.106 55.000 0.00 0.00 0.00 2.90
636 651 0.753479 TCGGCTGTCCTCTCCATCTC 60.753 60.000 0.00 0.00 0.00 2.75
637 652 1.743321 CGGCTGTCCTCTCCATCTCC 61.743 65.000 0.00 0.00 0.00 3.71
655 670 4.253685 TCTCCATTTCTTTAGTGCTTCCG 58.746 43.478 0.00 0.00 0.00 4.30
660 675 2.743636 TCTTTAGTGCTTCCGTCCAG 57.256 50.000 0.00 0.00 0.00 3.86
664 679 2.449967 TAGTGCTTCCGTCCAGGGGA 62.450 60.000 0.00 0.00 41.52 4.81
719 735 1.473257 GCTGTCATGGCGTAAGGATCA 60.473 52.381 0.00 0.00 38.28 2.92
720 736 2.477825 CTGTCATGGCGTAAGGATCAG 58.522 52.381 0.00 0.00 38.28 2.90
724 740 4.130118 GTCATGGCGTAAGGATCAGAAAT 58.870 43.478 0.00 0.00 38.28 2.17
733 749 5.239525 CGTAAGGATCAGAAATCAAATCCCC 59.760 44.000 0.00 0.00 38.78 4.81
734 750 5.478503 AAGGATCAGAAATCAAATCCCCT 57.521 39.130 0.00 0.00 38.78 4.79
735 751 4.801164 AGGATCAGAAATCAAATCCCCTG 58.199 43.478 0.00 0.00 38.78 4.45
768 784 1.606885 AATCCATGCAAGCAACCCGG 61.607 55.000 0.00 0.00 0.00 5.73
769 785 2.786512 ATCCATGCAAGCAACCCGGT 62.787 55.000 0.00 0.00 0.00 5.28
771 787 1.973281 CATGCAAGCAACCCGGTCT 60.973 57.895 0.00 0.00 0.00 3.85
772 788 1.675641 ATGCAAGCAACCCGGTCTC 60.676 57.895 0.00 0.00 0.00 3.36
774 790 2.750350 CAAGCAACCCGGTCTCCT 59.250 61.111 0.00 0.00 0.00 3.69
776 792 0.955919 CAAGCAACCCGGTCTCCTTC 60.956 60.000 0.00 0.00 0.00 3.46
777 793 2.046217 GCAACCCGGTCTCCTTCC 60.046 66.667 0.00 0.00 0.00 3.46
778 794 2.669240 CAACCCGGTCTCCTTCCC 59.331 66.667 0.00 0.00 0.00 3.97
779 795 1.918800 CAACCCGGTCTCCTTCCCT 60.919 63.158 0.00 0.00 0.00 4.20
780 796 1.612739 AACCCGGTCTCCTTCCCTC 60.613 63.158 0.00 0.00 0.00 4.30
804 820 3.901844 TGGTGGCCCTCAGTATCTTATAC 59.098 47.826 0.00 0.00 0.00 1.47
805 821 3.901844 GGTGGCCCTCAGTATCTTATACA 59.098 47.826 0.00 0.00 0.00 2.29
806 822 4.021016 GGTGGCCCTCAGTATCTTATACAG 60.021 50.000 0.00 0.00 0.00 2.74
807 823 4.589374 GTGGCCCTCAGTATCTTATACAGT 59.411 45.833 0.00 0.00 0.00 3.55
815 831 7.335924 CCTCAGTATCTTATACAGTAGCTCCTC 59.664 44.444 0.00 0.00 0.00 3.71
818 834 4.115398 TCTTATACAGTAGCTCCTCCCC 57.885 50.000 0.00 0.00 0.00 4.81
819 835 3.727923 TCTTATACAGTAGCTCCTCCCCT 59.272 47.826 0.00 0.00 0.00 4.79
820 836 2.687003 ATACAGTAGCTCCTCCCCTC 57.313 55.000 0.00 0.00 0.00 4.30
821 837 0.556747 TACAGTAGCTCCTCCCCTCC 59.443 60.000 0.00 0.00 0.00 4.30
822 838 1.225403 ACAGTAGCTCCTCCCCTCCT 61.225 60.000 0.00 0.00 0.00 3.69
823 839 0.469144 CAGTAGCTCCTCCCCTCCTC 60.469 65.000 0.00 0.00 0.00 3.71
824 840 1.152419 GTAGCTCCTCCCCTCCTCC 60.152 68.421 0.00 0.00 0.00 4.30
825 841 1.310090 TAGCTCCTCCCCTCCTCCT 60.310 63.158 0.00 0.00 0.00 3.69
826 842 0.027907 TAGCTCCTCCCCTCCTCCTA 60.028 60.000 0.00 0.00 0.00 2.94
827 843 0.708007 AGCTCCTCCCCTCCTCCTAT 60.708 60.000 0.00 0.00 0.00 2.57
828 844 0.252057 GCTCCTCCCCTCCTCCTATC 60.252 65.000 0.00 0.00 0.00 2.08
829 845 0.039035 CTCCTCCCCTCCTCCTATCG 59.961 65.000 0.00 0.00 0.00 2.92
835 851 1.834378 CCTCCTCCTATCGGCAGCA 60.834 63.158 0.00 0.00 0.00 4.41
840 856 2.025767 CTCCTATCGGCAGCAGCAGT 62.026 60.000 2.65 0.00 44.61 4.40
841 857 1.886313 CCTATCGGCAGCAGCAGTG 60.886 63.158 2.65 0.00 44.61 3.66
852 868 3.492353 AGCAGTGCTGGTGGTGGT 61.492 61.111 18.98 0.00 40.15 4.16
853 869 3.289834 GCAGTGCTGGTGGTGGTG 61.290 66.667 8.18 0.00 0.00 4.17
854 870 3.289834 CAGTGCTGGTGGTGGTGC 61.290 66.667 0.00 0.00 0.00 5.01
886 902 0.992802 GAGCTACTGTTGCGTACTGC 59.007 55.000 8.49 3.22 46.70 4.40
938 954 2.266055 GCCTCTTCCACTCCACCG 59.734 66.667 0.00 0.00 0.00 4.94
974 990 2.348998 CACTCCAGCTCCACCCAC 59.651 66.667 0.00 0.00 0.00 4.61
987 1003 2.045536 CCCACTGGAGCTTGCTCC 60.046 66.667 29.03 29.03 43.60 4.70
996 1012 4.473520 GCTTGCTCCGCCTAGCCA 62.474 66.667 2.72 0.00 42.05 4.75
1035 1054 3.432588 GCTCTGCTGCTGCTGGTG 61.433 66.667 19.63 14.34 40.48 4.17
1036 1055 2.346365 CTCTGCTGCTGCTGGTGA 59.654 61.111 19.63 10.50 40.48 4.02
1155 1177 1.028868 AGTACTCGGGCTACGTCACC 61.029 60.000 0.00 0.00 44.69 4.02
1350 1372 4.245660 CGCTCTACCTCAACAAGAATTCA 58.754 43.478 8.44 0.00 0.00 2.57
1387 1412 1.074752 GCCGTCTTCTTCTTCAGCTG 58.925 55.000 7.63 7.63 0.00 4.24
1388 1413 1.074752 CCGTCTTCTTCTTCAGCTGC 58.925 55.000 9.47 0.00 0.00 5.25
1389 1414 1.337635 CCGTCTTCTTCTTCAGCTGCT 60.338 52.381 9.47 0.00 0.00 4.24
1390 1415 2.411904 CGTCTTCTTCTTCAGCTGCTT 58.588 47.619 9.47 0.00 0.00 3.91
1391 1416 2.157279 CGTCTTCTTCTTCAGCTGCTTG 59.843 50.000 9.47 1.25 0.00 4.01
1392 1417 3.397482 GTCTTCTTCTTCAGCTGCTTGA 58.603 45.455 9.47 3.88 0.00 3.02
1393 1418 3.432933 GTCTTCTTCTTCAGCTGCTTGAG 59.567 47.826 9.47 4.80 0.00 3.02
1409 1434 1.373999 GAGCTTCAGTCAGCAGCGT 60.374 57.895 0.00 0.00 42.84 5.07
1410 1435 1.350706 GAGCTTCAGTCAGCAGCGTC 61.351 60.000 0.00 0.00 42.84 5.19
1411 1436 1.665916 GCTTCAGTCAGCAGCGTCA 60.666 57.895 0.00 0.00 39.83 4.35
1412 1437 1.895280 GCTTCAGTCAGCAGCGTCAC 61.895 60.000 0.00 0.00 39.83 3.67
1413 1438 0.598419 CTTCAGTCAGCAGCGTCACA 60.598 55.000 0.00 0.00 0.00 3.58
1414 1439 0.033920 TTCAGTCAGCAGCGTCACAT 59.966 50.000 0.00 0.00 0.00 3.21
1415 1440 0.033920 TCAGTCAGCAGCGTCACATT 59.966 50.000 0.00 0.00 0.00 2.71
1416 1441 0.870393 CAGTCAGCAGCGTCACATTT 59.130 50.000 0.00 0.00 0.00 2.32
1418 1443 2.069273 AGTCAGCAGCGTCACATTTAC 58.931 47.619 0.00 0.00 0.00 2.01
1419 1444 1.798223 GTCAGCAGCGTCACATTTACA 59.202 47.619 0.00 0.00 0.00 2.41
1420 1445 1.798223 TCAGCAGCGTCACATTTACAC 59.202 47.619 0.00 0.00 0.00 2.90
1421 1446 1.530720 CAGCAGCGTCACATTTACACA 59.469 47.619 0.00 0.00 0.00 3.72
1423 1448 2.160219 AGCAGCGTCACATTTACACATG 59.840 45.455 0.00 0.00 0.00 3.21
1424 1449 2.728846 GCAGCGTCACATTTACACATGG 60.729 50.000 0.00 0.00 0.00 3.66
1425 1450 2.483877 CAGCGTCACATTTACACATGGT 59.516 45.455 0.00 0.00 0.00 3.55
1426 1451 2.483877 AGCGTCACATTTACACATGGTG 59.516 45.455 0.00 0.00 39.75 4.17
1428 1453 3.304391 GCGTCACATTTACACATGGTGTT 60.304 43.478 7.37 0.00 45.08 3.32
1430 1455 4.674662 CGTCACATTTACACATGGTGTTTG 59.325 41.667 7.37 6.34 45.08 2.93
1431 1456 5.504830 CGTCACATTTACACATGGTGTTTGA 60.505 40.000 7.37 1.44 45.08 2.69
1432 1457 6.446318 GTCACATTTACACATGGTGTTTGAT 58.554 36.000 7.37 0.00 45.08 2.57
1499 1565 1.542492 TCTCCTACTCCAACACGTCC 58.458 55.000 0.00 0.00 0.00 4.79
1514 1580 1.134367 ACGTCCATGGATCTGTACACG 59.866 52.381 19.62 16.64 0.00 4.49
1517 1583 0.875908 CCATGGATCTGTACACGGCG 60.876 60.000 5.56 4.80 0.00 6.46
1566 1632 4.438744 GGAAGATTCATCGCCATTTTCGTT 60.439 41.667 0.00 0.00 0.00 3.85
1593 1660 3.485463 TTCCGGTGACACTGATTCTTT 57.515 42.857 16.28 0.00 0.00 2.52
1629 1699 2.621070 ACTTCCTGTCCTTTGCCTCTA 58.379 47.619 0.00 0.00 0.00 2.43
1695 1765 0.043940 ACTGGCTGGAGAGATTCCCT 59.956 55.000 0.00 0.00 46.19 4.20
1745 1815 3.164268 CTGGAGAGAGCTATGCAGGTAT 58.836 50.000 5.83 0.00 36.75 2.73
1791 1876 8.674263 ATGTTGCAAAATTTTCACAGGAAATA 57.326 26.923 0.00 0.00 42.31 1.40
1819 1907 6.916360 AATTCTAGCAGGAATTGGTGAAAA 57.084 33.333 13.55 0.00 42.23 2.29
1842 1930 2.584965 TCATCTTCCAAATGGGGCCTAA 59.415 45.455 0.84 0.00 37.22 2.69
1869 1959 7.935338 TGAATTTTCTGTTCTGATTCTTTGC 57.065 32.000 0.00 0.00 0.00 3.68
1880 1970 4.703575 TCTGATTCTTTGCTTGATGGAAGG 59.296 41.667 0.00 0.00 31.56 3.46
1887 1977 2.811410 TGCTTGATGGAAGGCTGATTT 58.189 42.857 0.00 0.00 31.56 2.17
1888 1978 3.167485 TGCTTGATGGAAGGCTGATTTT 58.833 40.909 0.00 0.00 31.56 1.82
1889 1979 3.579586 TGCTTGATGGAAGGCTGATTTTT 59.420 39.130 0.00 0.00 31.56 1.94
1890 1980 4.771577 TGCTTGATGGAAGGCTGATTTTTA 59.228 37.500 0.00 0.00 31.56 1.52
1891 1981 5.422970 TGCTTGATGGAAGGCTGATTTTTAT 59.577 36.000 0.00 0.00 31.56 1.40
1892 1982 6.070653 TGCTTGATGGAAGGCTGATTTTTATT 60.071 34.615 0.00 0.00 31.56 1.40
1893 1983 6.820152 GCTTGATGGAAGGCTGATTTTTATTT 59.180 34.615 0.00 0.00 31.56 1.40
1894 1984 7.335171 GCTTGATGGAAGGCTGATTTTTATTTT 59.665 33.333 0.00 0.00 31.56 1.82
1895 1985 9.223099 CTTGATGGAAGGCTGATTTTTATTTTT 57.777 29.630 0.00 0.00 0.00 1.94
1967 2057 2.053627 CGAAAAGAACAATGGCACTGC 58.946 47.619 0.00 0.00 0.00 4.40
1968 2058 6.803418 TTCGAAAAGAACAATGGCACTGCC 62.803 45.833 13.68 13.68 40.82 4.85
2023 2117 8.834465 TGGTAAACATTTGAAATCCATGTTTTG 58.166 29.630 18.43 0.00 44.87 2.44
2024 2118 7.802720 GGTAAACATTTGAAATCCATGTTTTGC 59.197 33.333 18.43 13.92 44.87 3.68
2028 2122 6.543100 ACATTTGAAATCCATGTTTTGCTTGT 59.457 30.769 0.00 0.00 0.00 3.16
2171 2366 3.324846 TCTCTGACAGCACTTACCACAAT 59.675 43.478 0.00 0.00 0.00 2.71
2343 2538 3.220110 CTGGGAGGACGCTATGTAAGTA 58.780 50.000 0.00 0.00 0.00 2.24
2344 2539 2.954318 TGGGAGGACGCTATGTAAGTAC 59.046 50.000 0.00 0.00 0.00 2.73
2349 2544 5.393896 GGAGGACGCTATGTAAGTACTTTGT 60.394 44.000 14.49 3.05 0.00 2.83
2402 2604 9.471084 ACTTTTAAATTTCCCGTTCTTACATTG 57.529 29.630 0.00 0.00 0.00 2.82
2411 2613 7.136289 TCCCGTTCTTACATTGAAAATACAC 57.864 36.000 0.00 0.00 0.00 2.90
2416 2618 7.744715 CGTTCTTACATTGAAAATACACTGGAC 59.255 37.037 0.00 0.00 0.00 4.02
2430 2632 5.815233 ACACTGGACTATGGATTCTATGG 57.185 43.478 0.00 0.00 0.00 2.74
2439 2641 0.251077 GGATTCTATGGGCAGGCAGG 60.251 60.000 0.00 0.00 0.00 4.85
2463 2665 6.401367 GGAGTGCAATGTCAATAACAAAATGC 60.401 38.462 0.00 0.00 42.37 3.56
2474 2676 8.987890 GTCAATAACAAAATGCTGGTTAAACAT 58.012 29.630 0.00 0.00 31.49 2.71
2483 2685 2.352715 GCTGGTTAAACATCAGCCCAAC 60.353 50.000 0.00 0.00 45.67 3.77
2494 2696 4.242602 GCCCAACAGGGTAGATGC 57.757 61.111 2.03 0.00 44.99 3.91
2498 2700 2.356741 GCCCAACAGGGTAGATGCTAAA 60.357 50.000 2.03 0.00 44.99 1.85
2500 2702 3.054361 CCCAACAGGGTAGATGCTAAACT 60.054 47.826 0.00 0.00 37.83 2.66
2575 2777 8.680903 CATTTTAGACTGAATAAGGAGCAATGT 58.319 33.333 0.00 0.00 0.00 2.71
2602 2805 2.230992 AGCTCAGTGTAGTTCTCTGCTG 59.769 50.000 0.00 0.00 37.51 4.41
2611 2814 0.534873 GTTCTCTGCTGAGGAGGGTC 59.465 60.000 19.23 0.00 40.58 4.46
2626 2829 3.117131 GGAGGGTCCAATTGGTCCAATAT 60.117 47.826 32.91 19.83 43.87 1.28
2629 2832 6.011981 GGAGGGTCCAATTGGTCCAATATATA 60.012 42.308 32.91 7.04 43.87 0.86
2669 2872 8.196771 TGATAAATTGAAGTAATGGGTGCAATC 58.803 33.333 0.00 0.00 0.00 2.67
2874 3083 1.197492 TGCTGACATGAAACGTGATGC 59.803 47.619 0.00 0.00 0.00 3.91
2922 3131 6.991938 TGCATTGCCTTAGAACTATTTGTTT 58.008 32.000 6.12 0.00 39.30 2.83
3339 3588 4.842574 TCTACCATGAGTTAATTGCAGCA 58.157 39.130 0.00 0.00 0.00 4.41
3413 3662 9.466497 TGCTTGTTTCAGATTTCTTATATTCCT 57.534 29.630 0.00 0.00 0.00 3.36
3428 3708 9.922477 TCTTATATTCCTCATGACCGAGTATAT 57.078 33.333 0.00 0.00 0.00 0.86
3449 3729 9.109533 GTATATGTTTTTGTCAGTTTAACACGG 57.890 33.333 0.00 0.00 32.20 4.94
3456 3736 3.118702 TGTCAGTTTAACACGGAGTCCAA 60.119 43.478 10.49 0.00 41.61 3.53
3467 3747 1.873591 CGGAGTCCAACTTGTTTCTGG 59.126 52.381 10.49 0.00 0.00 3.86
3472 3752 4.461198 AGTCCAACTTGTTTCTGGGTTAG 58.539 43.478 0.00 0.00 0.00 2.34
3478 3758 5.074746 ACTTGTTTCTGGGTTAGGGAATT 57.925 39.130 0.00 0.00 0.00 2.17
3481 3761 7.246027 ACTTGTTTCTGGGTTAGGGAATTATT 58.754 34.615 0.00 0.00 0.00 1.40
3485 3765 8.371699 TGTTTCTGGGTTAGGGAATTATTTTTG 58.628 33.333 0.00 0.00 0.00 2.44
3492 3772 7.601130 GGGTTAGGGAATTATTTTTGTGTGTTC 59.399 37.037 0.00 0.00 0.00 3.18
3493 3773 8.364894 GGTTAGGGAATTATTTTTGTGTGTTCT 58.635 33.333 0.00 0.00 0.00 3.01
3495 3775 6.223120 AGGGAATTATTTTTGTGTGTTCTGC 58.777 36.000 0.00 0.00 0.00 4.26
3499 3780 7.360269 GGAATTATTTTTGTGTGTTCTGCATGG 60.360 37.037 0.00 0.00 0.00 3.66
3502 3783 0.669619 TTGTGTGTTCTGCATGGCTG 59.330 50.000 0.00 0.00 0.00 4.85
3517 3799 3.526931 TGGCTGACTGCAGTATCTAAC 57.473 47.619 21.73 6.69 44.17 2.34
3524 3806 5.262009 TGACTGCAGTATCTAACTACCACT 58.738 41.667 21.73 0.00 35.76 4.00
3547 3831 8.438513 CACTTTATATTGATATCGGCTTGTCTG 58.561 37.037 0.00 0.00 0.00 3.51
3563 3851 6.014669 GGCTTGTCTGTATAGATCTTCTCCAT 60.015 42.308 0.00 0.00 34.94 3.41
3640 3942 4.037803 TGATTTCTAGCTGCTGCAAAACAA 59.962 37.500 18.42 4.27 42.74 2.83
3644 3946 2.433868 AGCTGCTGCAAAACAATCTG 57.566 45.000 18.42 0.00 42.74 2.90
3645 3947 1.684983 AGCTGCTGCAAAACAATCTGT 59.315 42.857 18.42 0.00 42.74 3.41
3673 3975 9.506018 TGTATAATGTTGACCTCATGGATAATG 57.494 33.333 0.00 0.00 37.66 1.90
3675 3977 6.949352 AATGTTGACCTCATGGATAATGAC 57.051 37.500 0.00 0.00 40.50 3.06
3696 3998 5.048083 TGACTGACCATGCATTTTACCTTTC 60.048 40.000 0.00 0.00 0.00 2.62
3747 4049 4.035208 CCTGTAACCGCAACAAGATATTCC 59.965 45.833 0.00 0.00 0.00 3.01
3757 4059 5.506317 GCAACAAGATATTCCATAAGCGCTT 60.506 40.000 27.97 27.97 0.00 4.68
3759 4061 6.064846 ACAAGATATTCCATAAGCGCTTTG 57.935 37.500 30.13 23.31 0.00 2.77
3819 4121 1.888512 CATGGAAAGGTGGGTTCACTG 59.111 52.381 0.00 0.00 43.17 3.66
3824 4126 3.005791 GGAAAGGTGGGTTCACTGAAATG 59.994 47.826 0.00 0.00 43.17 2.32
3826 4128 0.603065 GGTGGGTTCACTGAAATGGC 59.397 55.000 0.00 0.00 43.17 4.40
3839 4141 8.213518 TCACTGAAATGGCTATTCACTAAATC 57.786 34.615 0.00 0.00 33.47 2.17
3871 4173 2.143925 GTCCCAGAAAGACCAGTTTCG 58.856 52.381 0.00 0.00 40.72 3.46
3877 4179 5.395768 CCCAGAAAGACCAGTTTCGATCTAT 60.396 44.000 0.00 0.00 40.72 1.98
3880 4182 7.596995 CCAGAAAGACCAGTTTCGATCTATATC 59.403 40.741 0.00 0.00 40.72 1.63
3881 4183 8.138074 CAGAAAGACCAGTTTCGATCTATATCA 58.862 37.037 0.00 0.00 40.72 2.15
3883 4185 9.482627 GAAAGACCAGTTTCGATCTATATCAAT 57.517 33.333 0.00 0.00 31.93 2.57
3920 4223 1.142870 CAGGTTGGAGGTTGGAGTCAA 59.857 52.381 0.00 0.00 0.00 3.18
3944 4247 4.961438 TTACAAAGGACTAACCCTCGTT 57.039 40.909 0.00 0.00 40.05 3.85
3956 4259 1.226888 CCTCGTTACCGTAGCAGGC 60.227 63.158 0.00 0.00 35.01 4.85
4059 4362 3.341823 ACTCAATAGCCACTTGAAGCAG 58.658 45.455 0.00 0.00 32.53 4.24
4060 4363 3.008375 ACTCAATAGCCACTTGAAGCAGA 59.992 43.478 0.00 0.00 32.53 4.26
4080 4383 9.502091 AAGCAGAAAATGATAGTGTAAACTACA 57.498 29.630 0.00 0.00 36.08 2.74
4108 4413 8.687824 AATCATATTCACCGTTTTTCACATTC 57.312 30.769 0.00 0.00 0.00 2.67
4295 4600 9.944376 TTACTCACTGCATAGAAAGAAAATACT 57.056 29.630 0.00 0.00 0.00 2.12
4296 4601 8.485976 ACTCACTGCATAGAAAGAAAATACTC 57.514 34.615 0.00 0.00 0.00 2.59
4297 4602 7.550906 ACTCACTGCATAGAAAGAAAATACTCC 59.449 37.037 0.00 0.00 0.00 3.85
4298 4603 7.394016 TCACTGCATAGAAAGAAAATACTCCA 58.606 34.615 0.00 0.00 0.00 3.86
4299 4604 8.049117 TCACTGCATAGAAAGAAAATACTCCAT 58.951 33.333 0.00 0.00 0.00 3.41
4300 4605 8.341173 CACTGCATAGAAAGAAAATACTCCATC 58.659 37.037 0.00 0.00 0.00 3.51
4301 4606 7.500559 ACTGCATAGAAAGAAAATACTCCATCC 59.499 37.037 0.00 0.00 0.00 3.51
4302 4607 6.483307 TGCATAGAAAGAAAATACTCCATCCG 59.517 38.462 0.00 0.00 0.00 4.18
4303 4608 6.483640 GCATAGAAAGAAAATACTCCATCCGT 59.516 38.462 0.00 0.00 0.00 4.69
4304 4609 7.307455 GCATAGAAAGAAAATACTCCATCCGTC 60.307 40.741 0.00 0.00 0.00 4.79
4305 4610 5.429130 AGAAAGAAAATACTCCATCCGTCC 58.571 41.667 0.00 0.00 0.00 4.79
4306 4611 3.840124 AGAAAATACTCCATCCGTCCC 57.160 47.619 0.00 0.00 0.00 4.46
4307 4612 3.112263 AGAAAATACTCCATCCGTCCCA 58.888 45.455 0.00 0.00 0.00 4.37
4308 4613 3.716872 AGAAAATACTCCATCCGTCCCAT 59.283 43.478 0.00 0.00 0.00 4.00
4309 4614 4.905456 AGAAAATACTCCATCCGTCCCATA 59.095 41.667 0.00 0.00 0.00 2.74
4310 4615 5.368523 AGAAAATACTCCATCCGTCCCATAA 59.631 40.000 0.00 0.00 0.00 1.90
4311 4616 5.843019 AAATACTCCATCCGTCCCATAAT 57.157 39.130 0.00 0.00 0.00 1.28
4312 4617 4.826274 ATACTCCATCCGTCCCATAATG 57.174 45.455 0.00 0.00 0.00 1.90
4313 4618 2.408565 ACTCCATCCGTCCCATAATGT 58.591 47.619 0.00 0.00 0.00 2.71
4314 4619 3.583228 ACTCCATCCGTCCCATAATGTA 58.417 45.455 0.00 0.00 0.00 2.29
4315 4620 3.971305 ACTCCATCCGTCCCATAATGTAA 59.029 43.478 0.00 0.00 0.00 2.41
4316 4621 4.040461 ACTCCATCCGTCCCATAATGTAAG 59.960 45.833 0.00 0.00 0.00 2.34
4317 4622 4.228010 TCCATCCGTCCCATAATGTAAGA 58.772 43.478 0.00 0.00 0.00 2.10
4318 4623 4.039973 TCCATCCGTCCCATAATGTAAGAC 59.960 45.833 0.00 0.00 0.00 3.01
4320 4625 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
4321 4626 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
4322 4627 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
4323 4628 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
4324 4629 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
4325 4630 6.245724 CGTCCCATAATGTAAGACGTTTTTC 58.754 40.000 0.00 0.00 43.89 2.29
4326 4631 6.128499 CGTCCCATAATGTAAGACGTTTTTCA 60.128 38.462 0.00 0.00 43.89 2.69
4327 4632 7.571613 CGTCCCATAATGTAAGACGTTTTTCAA 60.572 37.037 2.36 0.00 43.89 2.69
4328 4633 7.749126 GTCCCATAATGTAAGACGTTTTTCAAG 59.251 37.037 2.36 0.00 0.00 3.02
4329 4634 6.526674 CCCATAATGTAAGACGTTTTTCAAGC 59.473 38.462 2.36 0.00 0.00 4.01
4330 4635 7.305474 CCATAATGTAAGACGTTTTTCAAGCT 58.695 34.615 2.36 0.00 0.00 3.74
4331 4636 7.807907 CCATAATGTAAGACGTTTTTCAAGCTT 59.192 33.333 2.36 0.00 0.00 3.74
4332 4637 8.629986 CATAATGTAAGACGTTTTTCAAGCTTG 58.370 33.333 20.81 20.81 0.00 4.01
4333 4638 5.554822 TGTAAGACGTTTTTCAAGCTTGT 57.445 34.783 25.19 4.69 0.00 3.16
4334 4639 5.945155 TGTAAGACGTTTTTCAAGCTTGTT 58.055 33.333 25.19 11.65 0.00 2.83
4335 4640 6.383415 TGTAAGACGTTTTTCAAGCTTGTTT 58.617 32.000 25.19 9.70 0.00 2.83
4336 4641 7.528307 TGTAAGACGTTTTTCAAGCTTGTTTA 58.472 30.769 25.19 10.05 0.00 2.01
4337 4642 8.021973 TGTAAGACGTTTTTCAAGCTTGTTTAA 58.978 29.630 25.19 15.02 0.00 1.52
4338 4643 6.864560 AGACGTTTTTCAAGCTTGTTTAAC 57.135 33.333 25.19 22.15 0.00 2.01
4339 4644 6.617879 AGACGTTTTTCAAGCTTGTTTAACT 58.382 32.000 25.19 15.16 0.00 2.24
4340 4645 7.088272 AGACGTTTTTCAAGCTTGTTTAACTT 58.912 30.769 25.19 18.51 0.00 2.66
4341 4646 7.044589 ACGTTTTTCAAGCTTGTTTAACTTG 57.955 32.000 25.19 15.78 41.70 3.16
4342 4647 5.951494 CGTTTTTCAAGCTTGTTTAACTTGC 59.049 36.000 25.19 7.85 40.45 4.01
4343 4648 6.400515 CGTTTTTCAAGCTTGTTTAACTTGCA 60.401 34.615 25.19 0.00 40.45 4.08
4344 4649 7.294473 GTTTTTCAAGCTTGTTTAACTTGCAA 58.706 30.769 25.19 6.10 40.45 4.08
4345 4650 7.426929 TTTTCAAGCTTGTTTAACTTGCAAA 57.573 28.000 25.19 11.65 40.45 3.68
4346 4651 7.426929 TTTCAAGCTTGTTTAACTTGCAAAA 57.573 28.000 25.19 11.17 40.45 2.44
4347 4652 7.426929 TTCAAGCTTGTTTAACTTGCAAAAA 57.573 28.000 25.19 4.96 40.45 1.94
4348 4653 6.826612 TCAAGCTTGTTTAACTTGCAAAAAC 58.173 32.000 25.19 15.26 40.45 2.43
4349 4654 5.448926 AGCTTGTTTAACTTGCAAAAACG 57.551 34.783 16.44 7.75 36.19 3.60
4350 4655 4.926832 AGCTTGTTTAACTTGCAAAAACGT 59.073 33.333 16.44 2.56 36.19 3.99
4351 4656 5.061684 AGCTTGTTTAACTTGCAAAAACGTC 59.938 36.000 16.44 10.06 36.19 4.34
4352 4657 5.061684 GCTTGTTTAACTTGCAAAAACGTCT 59.938 36.000 16.44 0.80 36.19 4.18
4353 4658 6.400621 GCTTGTTTAACTTGCAAAAACGTCTT 60.401 34.615 16.44 0.00 36.19 3.01
4354 4659 7.201367 GCTTGTTTAACTTGCAAAAACGTCTTA 60.201 33.333 16.44 1.18 36.19 2.10
4355 4660 7.495339 TGTTTAACTTGCAAAAACGTCTTAC 57.505 32.000 16.44 5.05 36.19 2.34
4356 4661 7.082602 TGTTTAACTTGCAAAAACGTCTTACA 58.917 30.769 16.44 6.95 36.19 2.41
4357 4662 7.755822 TGTTTAACTTGCAAAAACGTCTTACAT 59.244 29.630 16.44 0.00 36.19 2.29
4358 4663 8.588789 GTTTAACTTGCAAAAACGTCTTACATT 58.411 29.630 8.93 0.00 0.00 2.71
4359 4664 6.567769 AACTTGCAAAAACGTCTTACATTG 57.432 33.333 0.00 0.00 0.00 2.82
4360 4665 5.646606 ACTTGCAAAAACGTCTTACATTGT 58.353 33.333 0.00 0.00 0.00 2.71
4361 4666 5.514914 ACTTGCAAAAACGTCTTACATTGTG 59.485 36.000 0.00 0.00 0.00 3.33
4362 4667 4.355437 TGCAAAAACGTCTTACATTGTGG 58.645 39.130 0.00 0.00 0.00 4.17
4363 4668 3.733727 GCAAAAACGTCTTACATTGTGGG 59.266 43.478 0.00 0.00 0.00 4.61
4364 4669 4.498345 GCAAAAACGTCTTACATTGTGGGA 60.498 41.667 0.00 0.00 0.00 4.37
4365 4670 4.823790 AAAACGTCTTACATTGTGGGAC 57.176 40.909 0.00 6.72 0.00 4.46
4367 4672 1.355971 CGTCTTACATTGTGGGACGG 58.644 55.000 24.96 14.26 43.69 4.79
4368 4673 1.067425 CGTCTTACATTGTGGGACGGA 60.067 52.381 24.96 5.37 43.69 4.69
4369 4674 2.618053 GTCTTACATTGTGGGACGGAG 58.382 52.381 0.00 0.00 0.00 4.63
4370 4675 1.553248 TCTTACATTGTGGGACGGAGG 59.447 52.381 0.00 0.00 0.00 4.30
4371 4676 0.616371 TTACATTGTGGGACGGAGGG 59.384 55.000 0.00 0.00 0.00 4.30
4372 4677 0.252330 TACATTGTGGGACGGAGGGA 60.252 55.000 0.00 0.00 0.00 4.20
4373 4678 1.221840 CATTGTGGGACGGAGGGAG 59.778 63.158 0.00 0.00 0.00 4.30
4374 4679 1.229529 ATTGTGGGACGGAGGGAGT 60.230 57.895 0.00 0.00 0.00 3.85
4375 4680 0.042131 ATTGTGGGACGGAGGGAGTA 59.958 55.000 0.00 0.00 0.00 2.59
4376 4681 0.178926 TTGTGGGACGGAGGGAGTAA 60.179 55.000 0.00 0.00 0.00 2.24
4377 4682 0.901580 TGTGGGACGGAGGGAGTAAC 60.902 60.000 0.00 0.00 0.00 2.50
4378 4683 0.614134 GTGGGACGGAGGGAGTAACT 60.614 60.000 0.00 0.00 0.00 2.24
4442 4751 6.016276 GTGTTTCTCACCATGTAATCCAACTT 60.016 38.462 0.00 0.00 40.84 2.66
4444 4753 7.174253 TGTTTCTCACCATGTAATCCAACTTAC 59.826 37.037 0.00 0.00 33.17 2.34
4451 4760 7.822334 CACCATGTAATCCAACTTACTAACTGA 59.178 37.037 0.00 0.00 33.62 3.41
4455 4764 7.383687 TGTAATCCAACTTACTAACTGAGGTG 58.616 38.462 0.00 0.00 33.62 4.00
4458 4767 5.081728 TCCAACTTACTAACTGAGGTGCTA 58.918 41.667 0.00 0.00 0.00 3.49
4459 4768 5.047519 TCCAACTTACTAACTGAGGTGCTAC 60.048 44.000 0.00 0.00 0.00 3.58
4515 4858 4.082787 ACCTTAATGTTGTGCTCCAATTCG 60.083 41.667 0.00 0.00 35.02 3.34
4522 4865 1.737236 TGTGCTCCAATTCGGAATTCG 59.263 47.619 12.86 7.33 45.75 3.34
4533 4876 1.425428 GGAATTCGCAGCGAGTTGG 59.575 57.895 28.02 0.00 36.06 3.77
4590 4938 5.258456 ACAATGCTCCATCACATGAATTC 57.742 39.130 0.00 0.00 0.00 2.17
4688 5037 9.732130 AACCCATAATTTAGATATCAAGAGAGC 57.268 33.333 5.32 0.00 0.00 4.09
4790 5139 7.415206 CCATTACCAGGACACAAAAACTATAGC 60.415 40.741 0.00 0.00 0.00 2.97
4813 5162 5.391310 GCAGGATCAACTTACACACATCAAG 60.391 44.000 0.00 0.00 0.00 3.02
4818 5167 4.991056 TCAACTTACACACATCAAGCTCTC 59.009 41.667 0.00 0.00 0.00 3.20
4859 5209 5.811613 TGAACAAAGGAACAAAATTCAGCAG 59.188 36.000 0.00 0.00 0.00 4.24
4869 5219 0.534877 AATTCAGCAGCGGTGTGTCA 60.535 50.000 17.07 5.61 32.43 3.58
4870 5220 0.321919 ATTCAGCAGCGGTGTGTCAT 60.322 50.000 17.07 7.41 32.43 3.06
4871 5221 0.320050 TTCAGCAGCGGTGTGTCATA 59.680 50.000 17.07 0.00 32.43 2.15
4872 5222 0.536724 TCAGCAGCGGTGTGTCATAT 59.463 50.000 17.07 0.00 32.43 1.78
4873 5223 0.933097 CAGCAGCGGTGTGTCATATC 59.067 55.000 17.07 0.00 0.00 1.63
4874 5224 0.536724 AGCAGCGGTGTGTCATATCA 59.463 50.000 17.07 0.00 0.00 2.15
4906 5256 7.822161 ATCATATCATAGAGAGAAGGGATCG 57.178 40.000 0.00 0.00 0.00 3.69
4987 5346 4.794439 CTGGACGCGCCGACATCA 62.794 66.667 5.73 0.00 40.66 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 165 4.699522 GTGGGGTGGTGGCGAGAC 62.700 72.222 0.00 0.00 0.00 3.36
215 220 1.474855 GGAGGAAGAAGATGAGGCTGC 60.475 57.143 0.00 0.00 0.00 5.25
350 357 2.351726 GACTAAATTAGGTGCGGTGCTG 59.648 50.000 4.92 0.00 0.00 4.41
373 381 4.641645 TGGGCTGGGTGACTTGCG 62.642 66.667 0.00 0.00 0.00 4.85
433 441 1.627297 CGGAGGAGGGAAAAGGGAGG 61.627 65.000 0.00 0.00 0.00 4.30
434 442 1.908483 CGGAGGAGGGAAAAGGGAG 59.092 63.158 0.00 0.00 0.00 4.30
435 443 2.298661 GCGGAGGAGGGAAAAGGGA 61.299 63.158 0.00 0.00 0.00 4.20
484 492 0.811219 TTGGAGGCGCGATGATTGAG 60.811 55.000 12.10 0.00 0.00 3.02
497 505 1.009829 CGAGATTTTCCGCTTGGAGG 58.990 55.000 0.00 0.00 44.35 4.30
499 507 1.024579 GCCGAGATTTTCCGCTTGGA 61.025 55.000 0.00 0.00 37.81 3.53
505 513 2.916716 CAAAATGTGCCGAGATTTTCCG 59.083 45.455 0.00 0.00 33.82 4.30
583 598 3.868077 CACATTCCCTTCTCATTCGACTC 59.132 47.826 0.00 0.00 0.00 3.36
584 599 3.515502 TCACATTCCCTTCTCATTCGACT 59.484 43.478 0.00 0.00 0.00 4.18
585 600 3.619038 GTCACATTCCCTTCTCATTCGAC 59.381 47.826 0.00 0.00 0.00 4.20
586 601 3.676049 CGTCACATTCCCTTCTCATTCGA 60.676 47.826 0.00 0.00 0.00 3.71
599 614 3.367607 CCGATCTCTTCTCGTCACATTC 58.632 50.000 0.00 0.00 34.36 2.67
601 616 1.066303 GCCGATCTCTTCTCGTCACAT 59.934 52.381 0.00 0.00 34.36 3.21
602 617 0.452184 GCCGATCTCTTCTCGTCACA 59.548 55.000 0.00 0.00 34.36 3.58
603 618 0.736053 AGCCGATCTCTTCTCGTCAC 59.264 55.000 0.00 0.00 34.36 3.67
604 619 0.735471 CAGCCGATCTCTTCTCGTCA 59.265 55.000 0.00 0.00 34.36 4.35
605 620 0.736053 ACAGCCGATCTCTTCTCGTC 59.264 55.000 0.00 0.00 34.36 4.20
606 621 0.736053 GACAGCCGATCTCTTCTCGT 59.264 55.000 0.00 0.00 34.36 4.18
607 622 0.030101 GGACAGCCGATCTCTTCTCG 59.970 60.000 0.00 0.00 35.92 4.04
608 623 1.336755 GAGGACAGCCGATCTCTTCTC 59.663 57.143 0.00 0.00 39.96 2.87
609 624 1.064017 AGAGGACAGCCGATCTCTTCT 60.064 52.381 0.00 0.00 39.96 2.85
612 627 0.467290 GGAGAGGACAGCCGATCTCT 60.467 60.000 0.00 0.00 36.33 3.10
629 644 5.441718 AGCACTAAAGAAATGGAGATGGA 57.558 39.130 0.00 0.00 0.00 3.41
630 645 5.067023 GGAAGCACTAAAGAAATGGAGATGG 59.933 44.000 0.00 0.00 0.00 3.51
632 647 4.878397 CGGAAGCACTAAAGAAATGGAGAT 59.122 41.667 0.00 0.00 0.00 2.75
633 648 4.253685 CGGAAGCACTAAAGAAATGGAGA 58.746 43.478 0.00 0.00 0.00 3.71
635 650 4.000988 GACGGAAGCACTAAAGAAATGGA 58.999 43.478 0.00 0.00 0.00 3.41
636 651 3.127030 GGACGGAAGCACTAAAGAAATGG 59.873 47.826 0.00 0.00 0.00 3.16
637 652 3.751175 TGGACGGAAGCACTAAAGAAATG 59.249 43.478 0.00 0.00 0.00 2.32
672 687 3.092511 TCAGAGGGGCCATGGCTC 61.093 66.667 34.70 32.37 41.76 4.70
673 688 3.095163 CTCAGAGGGGCCATGGCT 61.095 66.667 34.70 17.16 41.60 4.75
675 690 3.095163 AGCTCAGAGGGGCCATGG 61.095 66.667 7.63 7.63 0.00 3.66
677 692 2.041762 TCAGCTCAGAGGGGCCAT 59.958 61.111 4.39 0.00 0.00 4.40
678 693 2.686470 CTCAGCTCAGAGGGGCCA 60.686 66.667 4.39 0.00 31.94 5.36
679 694 4.173924 GCTCAGCTCAGAGGGGCC 62.174 72.222 0.00 0.00 36.15 5.80
681 696 2.428834 CTAGCTCAGCTCAGAGGGG 58.571 63.158 0.00 0.00 40.44 4.79
719 735 2.105766 GCAGCAGGGGATTTGATTTCT 58.894 47.619 0.00 0.00 0.00 2.52
720 736 2.105766 AGCAGCAGGGGATTTGATTTC 58.894 47.619 0.00 0.00 0.00 2.17
724 740 1.679977 GCAGCAGCAGGGGATTTGA 60.680 57.895 0.00 0.00 41.58 2.69
733 749 0.179161 GATTTCAGCAGCAGCAGCAG 60.179 55.000 12.92 3.97 45.49 4.24
734 750 1.592400 GGATTTCAGCAGCAGCAGCA 61.592 55.000 12.92 0.00 45.49 4.41
735 751 1.139095 GGATTTCAGCAGCAGCAGC 59.861 57.895 3.17 0.46 45.49 5.25
768 784 1.592223 CACCACGAGGGAAGGAGAC 59.408 63.158 3.29 0.00 41.15 3.36
769 785 1.609501 CCACCACGAGGGAAGGAGA 60.610 63.158 3.29 0.00 41.15 3.71
771 787 3.319198 GCCACCACGAGGGAAGGA 61.319 66.667 3.29 0.00 41.15 3.36
772 788 4.410400 GGCCACCACGAGGGAAGG 62.410 72.222 3.29 3.43 41.15 3.46
774 790 4.974438 AGGGCCACCACGAGGGAA 62.974 66.667 6.18 0.00 41.15 3.97
777 793 4.087892 CTGAGGGCCACCACGAGG 62.088 72.222 6.18 0.00 40.13 4.63
778 794 1.330655 ATACTGAGGGCCACCACGAG 61.331 60.000 6.18 0.00 40.13 4.18
779 795 1.305802 ATACTGAGGGCCACCACGA 60.306 57.895 6.18 0.00 40.13 4.35
780 796 1.144057 GATACTGAGGGCCACCACG 59.856 63.158 6.18 0.52 40.13 4.94
792 808 6.376018 GGGAGGAGCTACTGTATAAGATACTG 59.624 46.154 0.99 2.91 0.00 2.74
804 820 0.469144 GAGGAGGGGAGGAGCTACTG 60.469 65.000 0.99 0.00 0.00 2.74
805 821 1.661004 GGAGGAGGGGAGGAGCTACT 61.661 65.000 0.00 0.00 0.00 2.57
806 822 1.152419 GGAGGAGGGGAGGAGCTAC 60.152 68.421 0.00 0.00 0.00 3.58
807 823 0.027907 TAGGAGGAGGGGAGGAGCTA 60.028 60.000 0.00 0.00 0.00 3.32
824 840 2.532256 GCACTGCTGCTGCCGATAG 61.532 63.158 13.47 6.13 40.63 2.08
825 841 2.512286 GCACTGCTGCTGCCGATA 60.512 61.111 13.47 0.00 40.63 2.92
835 851 3.492353 ACCACCACCAGCACTGCT 61.492 61.111 0.00 0.00 40.77 4.24
840 856 4.584518 CTGGCACCACCACCAGCA 62.585 66.667 0.00 0.00 46.36 4.41
886 902 1.728426 GAGCTTGCTTGCACTTGCG 60.728 57.895 0.00 0.00 45.83 4.85
959 975 2.667418 CAGTGGGTGGAGCTGGAG 59.333 66.667 0.00 0.00 0.00 3.86
1027 1046 2.963854 CGCCGCTATCACCAGCAG 60.964 66.667 0.00 0.00 41.88 4.24
1028 1047 3.716539 GACGCCGCTATCACCAGCA 62.717 63.158 0.00 0.00 41.88 4.41
1033 1052 2.954868 CACCGACGCCGCTATCAC 60.955 66.667 0.00 0.00 0.00 3.06
1035 1054 2.654404 GACACCGACGCCGCTATC 60.654 66.667 0.00 0.00 0.00 2.08
1036 1055 2.292794 AATGACACCGACGCCGCTAT 62.293 55.000 0.00 0.00 0.00 2.97
1077 1099 4.458829 ATCCGGTCGCCCTCCTGA 62.459 66.667 0.00 0.00 0.00 3.86
1323 1345 2.724977 TGTTGAGGTAGAGCGTCTTG 57.275 50.000 0.00 0.00 33.47 3.02
1350 1372 0.676782 GCTACGCACCCTTGTTCCAT 60.677 55.000 0.00 0.00 0.00 3.41
1368 1390 1.074752 CAGCTGAAGAAGAAGACGGC 58.925 55.000 8.42 0.00 35.23 5.68
1387 1412 0.797542 CTGCTGACTGAAGCTCAAGC 59.202 55.000 8.19 0.00 43.90 4.01
1388 1413 0.797542 GCTGCTGACTGAAGCTCAAG 59.202 55.000 5.08 0.00 44.07 3.02
1389 1414 0.947660 CGCTGCTGACTGAAGCTCAA 60.948 55.000 10.33 0.00 45.29 3.02
1390 1415 1.373873 CGCTGCTGACTGAAGCTCA 60.374 57.895 10.33 0.00 45.29 4.26
1391 1416 1.350706 GACGCTGCTGACTGAAGCTC 61.351 60.000 10.33 4.01 45.29 4.09
1392 1417 1.373999 GACGCTGCTGACTGAAGCT 60.374 57.895 10.33 0.00 45.29 3.74
1393 1418 1.665916 TGACGCTGCTGACTGAAGC 60.666 57.895 2.17 2.17 44.01 3.86
1395 1420 0.033920 ATGTGACGCTGCTGACTGAA 59.966 50.000 0.00 0.00 0.00 3.02
1396 1421 0.033920 AATGTGACGCTGCTGACTGA 59.966 50.000 0.00 0.00 0.00 3.41
1397 1422 0.870393 AAATGTGACGCTGCTGACTG 59.130 50.000 0.00 0.00 0.00 3.51
1398 1423 2.069273 GTAAATGTGACGCTGCTGACT 58.931 47.619 0.00 0.00 0.00 3.41
1399 1424 1.798223 TGTAAATGTGACGCTGCTGAC 59.202 47.619 0.00 0.00 0.00 3.51
1401 1426 1.530720 TGTGTAAATGTGACGCTGCTG 59.469 47.619 0.00 0.00 0.00 4.41
1409 1434 6.647334 ATCAAACACCATGTGTAAATGTGA 57.353 33.333 0.00 1.33 46.79 3.58
1410 1435 6.346758 GCAATCAAACACCATGTGTAAATGTG 60.347 38.462 0.00 0.00 46.79 3.21
1411 1436 5.695816 GCAATCAAACACCATGTGTAAATGT 59.304 36.000 0.00 0.00 46.79 2.71
1412 1437 5.695363 TGCAATCAAACACCATGTGTAAATG 59.305 36.000 0.00 1.64 46.79 2.32
1413 1438 5.851720 TGCAATCAAACACCATGTGTAAAT 58.148 33.333 0.00 0.00 46.79 1.40
1414 1439 5.268118 TGCAATCAAACACCATGTGTAAA 57.732 34.783 0.00 0.00 46.79 2.01
1415 1440 4.795635 GCTGCAATCAAACACCATGTGTAA 60.796 41.667 0.00 0.00 46.79 2.41
1416 1441 3.305267 GCTGCAATCAAACACCATGTGTA 60.305 43.478 0.00 0.00 46.79 2.90
1418 1443 2.063266 GCTGCAATCAAACACCATGTG 58.937 47.619 0.00 0.00 39.75 3.21
1419 1444 1.336148 CGCTGCAATCAAACACCATGT 60.336 47.619 0.00 0.00 0.00 3.21
1420 1445 1.342555 CGCTGCAATCAAACACCATG 58.657 50.000 0.00 0.00 0.00 3.66
1421 1446 0.244450 CCGCTGCAATCAAACACCAT 59.756 50.000 0.00 0.00 0.00 3.55
1423 1448 1.734117 GCCGCTGCAATCAAACACC 60.734 57.895 0.00 0.00 37.47 4.16
1424 1449 1.734117 GGCCGCTGCAATCAAACAC 60.734 57.895 1.55 0.00 40.13 3.32
1425 1450 1.742324 TTGGCCGCTGCAATCAAACA 61.742 50.000 1.55 0.00 40.13 2.83
1426 1451 0.390209 ATTGGCCGCTGCAATCAAAC 60.390 50.000 1.55 0.00 40.13 2.93
1428 1453 0.321021 AAATTGGCCGCTGCAATCAA 59.679 45.000 1.55 0.00 40.13 2.57
1430 1455 1.698714 GCAAATTGGCCGCTGCAATC 61.699 55.000 11.91 0.00 40.13 2.67
1431 1456 1.742510 GCAAATTGGCCGCTGCAAT 60.743 52.632 11.91 0.00 40.13 3.56
1432 1457 2.357275 GCAAATTGGCCGCTGCAA 60.357 55.556 11.91 0.00 40.13 4.08
1499 1565 0.875908 CCGCCGTGTACAGATCCATG 60.876 60.000 0.00 0.00 0.00 3.66
1517 1583 1.255667 TACCTGTCTTGGCGTCTCCC 61.256 60.000 0.00 0.00 0.00 4.30
1545 1611 4.662145 GAACGAAAATGGCGATGAATCTT 58.338 39.130 0.00 0.00 0.00 2.40
1546 1612 3.242413 CGAACGAAAATGGCGATGAATCT 60.242 43.478 0.00 0.00 0.00 2.40
1548 1614 2.675844 TCGAACGAAAATGGCGATGAAT 59.324 40.909 0.00 0.00 0.00 2.57
1550 1616 1.658596 CTCGAACGAAAATGGCGATGA 59.341 47.619 0.00 0.00 0.00 2.92
1554 1620 0.165944 AAGCTCGAACGAAAATGGCG 59.834 50.000 0.00 0.00 0.00 5.69
1566 1632 1.006571 GTGTCACCGGAAAGCTCGA 60.007 57.895 9.46 0.00 0.00 4.04
1593 1660 3.903090 AGGAAGTTGGCATCAAAATTCCA 59.097 39.130 15.93 0.00 44.83 3.53
1629 1699 6.460123 CCAGTGCTACAAGACAAGACAAAAAT 60.460 38.462 0.00 0.00 0.00 1.82
1695 1765 4.737578 AGAACTCCCTGTACTTGTACTGA 58.262 43.478 15.98 8.12 0.00 3.41
1760 1845 5.296283 TGTGAAAATTTTGCAACATTCCTGG 59.704 36.000 11.08 0.00 0.00 4.45
1768 1853 8.141835 ACTATTTCCTGTGAAAATTTTGCAAC 57.858 30.769 8.47 4.77 43.37 4.17
1770 1855 7.984050 TGAACTATTTCCTGTGAAAATTTTGCA 59.016 29.630 8.47 6.40 43.37 4.08
1802 1887 3.565307 TGAGTTTTCACCAATTCCTGCT 58.435 40.909 0.00 0.00 0.00 4.24
1812 1897 5.473039 CCATTTGGAAGATGAGTTTTCACC 58.527 41.667 0.00 0.00 34.75 4.02
1813 1898 5.473039 CCCATTTGGAAGATGAGTTTTCAC 58.527 41.667 0.00 0.00 34.75 3.18
1815 1900 4.621510 GCCCCATTTGGAAGATGAGTTTTC 60.622 45.833 0.00 0.00 37.39 2.29
1819 1907 1.342374 GGCCCCATTTGGAAGATGAGT 60.342 52.381 0.00 0.00 37.39 3.41
1869 1959 8.782339 AAAATAAAAATCAGCCTTCCATCAAG 57.218 30.769 0.00 0.00 0.00 3.02
1896 1986 9.299465 ACATAATGCCCTGAAATTTTCAAAAAT 57.701 25.926 12.62 2.82 39.58 1.82
1967 2057 8.305046 TCCTTTGAGGTTAATTATTGGATTGG 57.695 34.615 0.00 0.00 36.53 3.16
1995 2085 7.060383 ACATGGATTTCAAATGTTTACCACA 57.940 32.000 0.00 0.00 40.71 4.17
2004 2094 6.961576 ACAAGCAAAACATGGATTTCAAATG 58.038 32.000 0.00 0.00 0.00 2.32
2023 2117 7.466860 CGGGAGTATATTGGAACTTTTACAAGC 60.467 40.741 0.00 0.00 32.57 4.01
2024 2118 7.767198 TCGGGAGTATATTGGAACTTTTACAAG 59.233 37.037 0.00 0.00 35.92 3.16
2028 2122 8.949177 GTTTTCGGGAGTATATTGGAACTTTTA 58.051 33.333 0.00 0.00 0.00 1.52
2096 2291 5.046663 TGTGCCAAGATAGTCATTGTAGTCA 60.047 40.000 0.00 0.00 0.00 3.41
2171 2366 6.206395 TCAAACAAGCATGTCTTCTTCAAA 57.794 33.333 0.00 0.00 39.40 2.69
2370 2565 8.913487 AGAACGGGAAATTTAAAAGTTCTAGA 57.087 30.769 19.96 0.00 43.10 2.43
2374 2569 9.687210 ATGTAAGAACGGGAAATTTAAAAGTTC 57.313 29.630 14.93 14.93 37.39 3.01
2376 2571 9.471084 CAATGTAAGAACGGGAAATTTAAAAGT 57.529 29.630 0.00 0.00 0.00 2.66
2377 2572 9.685828 TCAATGTAAGAACGGGAAATTTAAAAG 57.314 29.630 0.00 0.00 0.00 2.27
2385 2586 8.077386 GTGTATTTTCAATGTAAGAACGGGAAA 58.923 33.333 0.00 0.00 0.00 3.13
2390 2591 7.744715 GTCCAGTGTATTTTCAATGTAAGAACG 59.255 37.037 0.00 0.00 32.54 3.95
2401 2602 7.861629 AGAATCCATAGTCCAGTGTATTTTCA 58.138 34.615 0.00 0.00 0.00 2.69
2406 2608 6.441924 CCCATAGAATCCATAGTCCAGTGTAT 59.558 42.308 0.00 0.00 0.00 2.29
2411 2613 3.584406 TGCCCATAGAATCCATAGTCCAG 59.416 47.826 0.00 0.00 0.00 3.86
2416 2618 2.306805 TGCCTGCCCATAGAATCCATAG 59.693 50.000 0.00 0.00 0.00 2.23
2418 2620 1.075050 CTGCCTGCCCATAGAATCCAT 59.925 52.381 0.00 0.00 0.00 3.41
2430 2632 2.362120 ATTGCACTCCTGCCTGCC 60.362 61.111 0.00 0.00 43.51 4.85
2439 2641 6.366877 AGCATTTTGTTATTGACATTGCACTC 59.633 34.615 11.51 0.00 39.51 3.51
2463 2665 2.890311 TGTTGGGCTGATGTTTAACCAG 59.110 45.455 0.00 0.00 0.00 4.00
2483 2685 2.505819 ACCCAGTTTAGCATCTACCCTG 59.494 50.000 0.00 0.00 0.00 4.45
2491 2693 3.514309 AGTTCGTCTACCCAGTTTAGCAT 59.486 43.478 0.00 0.00 0.00 3.79
2494 2696 4.778534 TCAGTTCGTCTACCCAGTTTAG 57.221 45.455 0.00 0.00 0.00 1.85
2498 2700 3.576982 TCAATTCAGTTCGTCTACCCAGT 59.423 43.478 0.00 0.00 0.00 4.00
2500 2702 4.819105 ATCAATTCAGTTCGTCTACCCA 57.181 40.909 0.00 0.00 0.00 4.51
2575 2777 5.182190 CAGAGAACTACACTGAGCTGAACTA 59.818 44.000 0.00 0.00 39.04 2.24
2602 2805 0.256177 GGACCAATTGGACCCTCCTC 59.744 60.000 31.22 15.21 42.93 3.71
2611 2814 8.704849 TGGTTTCTATATATTGGACCAATTGG 57.295 34.615 24.48 23.31 35.54 3.16
2629 2832 9.918630 CTTCAATTTATCAGACATTTGGTTTCT 57.081 29.630 0.00 0.00 0.00 2.52
2650 2853 5.999205 ATTGATTGCACCCATTACTTCAA 57.001 34.783 0.00 0.00 0.00 2.69
2659 2862 5.245751 ACAGACAATTTATTGATTGCACCCA 59.754 36.000 9.32 0.00 39.97 4.51
2692 2895 7.231705 TCGAACGTAATCGCCAAAATATAAA 57.768 32.000 4.78 0.00 42.44 1.40
2856 3065 3.818961 AAGCATCACGTTTCATGTCAG 57.181 42.857 0.00 0.00 0.00 3.51
3339 3588 7.025620 ACCTGAATACCCATATCTTGATACCT 58.974 38.462 0.00 0.00 0.00 3.08
3413 3662 7.100409 TGACAAAAACATATACTCGGTCATGA 58.900 34.615 0.00 0.00 0.00 3.07
3428 3708 5.181622 ACTCCGTGTTAAACTGACAAAAACA 59.818 36.000 0.00 0.00 0.00 2.83
3446 3726 2.561569 CAGAAACAAGTTGGACTCCGT 58.438 47.619 7.96 0.00 0.00 4.69
3447 3727 1.873591 CCAGAAACAAGTTGGACTCCG 59.126 52.381 7.96 0.00 33.76 4.63
3449 3729 2.932261 ACCCAGAAACAAGTTGGACTC 58.068 47.619 7.96 0.64 33.76 3.36
3456 3736 4.741928 ATTCCCTAACCCAGAAACAAGT 57.258 40.909 0.00 0.00 0.00 3.16
3467 3747 8.364894 AGAACACACAAAAATAATTCCCTAACC 58.635 33.333 0.00 0.00 0.00 2.85
3472 3752 5.988561 TGCAGAACACACAAAAATAATTCCC 59.011 36.000 0.00 0.00 0.00 3.97
3478 3758 4.039004 AGCCATGCAGAACACACAAAAATA 59.961 37.500 0.00 0.00 0.00 1.40
3481 3761 1.755959 AGCCATGCAGAACACACAAAA 59.244 42.857 0.00 0.00 0.00 2.44
3485 3765 0.239347 GTCAGCCATGCAGAACACAC 59.761 55.000 0.00 0.00 0.00 3.82
3495 3775 2.616634 AGATACTGCAGTCAGCCATG 57.383 50.000 25.56 0.00 44.10 3.66
3499 3780 4.098044 TGGTAGTTAGATACTGCAGTCAGC 59.902 45.833 25.56 13.80 44.10 4.26
3502 3783 5.838531 AGTGGTAGTTAGATACTGCAGTC 57.161 43.478 25.56 10.38 40.84 3.51
3517 3799 8.873830 CAAGCCGATATCAATATAAAGTGGTAG 58.126 37.037 3.12 0.00 0.00 3.18
3531 3813 6.887002 AGATCTATACAGACAAGCCGATATCA 59.113 38.462 3.12 0.00 32.25 2.15
3563 3851 8.528044 CCTTAAGGGGCAATACTAAAAATGTA 57.472 34.615 14.25 0.00 0.00 2.29
3625 3926 1.684983 ACAGATTGTTTTGCAGCAGCT 59.315 42.857 1.76 0.00 42.74 4.24
3640 3942 8.896744 CATGAGGTCAACATTATACAAACAGAT 58.103 33.333 0.00 0.00 0.00 2.90
3644 3946 7.624360 TCCATGAGGTCAACATTATACAAAC 57.376 36.000 0.00 0.00 35.89 2.93
3645 3947 9.913310 TTATCCATGAGGTCAACATTATACAAA 57.087 29.630 0.00 0.00 35.89 2.83
3652 3954 6.544931 CAGTCATTATCCATGAGGTCAACATT 59.455 38.462 0.00 0.00 42.98 2.71
3655 3957 5.525378 GTCAGTCATTATCCATGAGGTCAAC 59.475 44.000 0.00 0.00 42.98 3.18
3657 3959 4.101585 GGTCAGTCATTATCCATGAGGTCA 59.898 45.833 0.00 0.00 42.98 4.02
3659 3961 4.040047 TGGTCAGTCATTATCCATGAGGT 58.960 43.478 0.00 0.00 42.98 3.85
3673 3975 5.183904 AGAAAGGTAAAATGCATGGTCAGTC 59.816 40.000 0.00 0.00 0.00 3.51
3675 3977 5.404946 CAGAAAGGTAAAATGCATGGTCAG 58.595 41.667 0.00 0.00 0.00 3.51
3696 3998 1.813092 GCATCTGTATCCCCACTGCAG 60.813 57.143 13.48 13.48 0.00 4.41
3757 4059 0.890542 ATCAGCGTTGGCAGCTTCAA 60.891 50.000 0.00 0.00 44.06 2.69
3759 4061 1.136147 CATCAGCGTTGGCAGCTTC 59.864 57.895 0.00 0.00 44.06 3.86
3765 4067 0.527565 ACCAATTCATCAGCGTTGGC 59.472 50.000 0.00 0.00 43.79 4.52
3804 4106 2.965147 CCATTTCAGTGAACCCACCTTT 59.035 45.455 4.68 0.00 44.22 3.11
3819 4121 7.715265 TCTCGATTTAGTGAATAGCCATTTC 57.285 36.000 0.00 0.00 0.00 2.17
3824 4126 8.831550 AGAATTTTCTCGATTTAGTGAATAGCC 58.168 33.333 0.00 0.00 29.94 3.93
3877 4179 8.469200 CCTGCAAAACAAAGAGGATTATTGATA 58.531 33.333 0.00 0.00 0.00 2.15
3880 4182 6.458210 ACCTGCAAAACAAAGAGGATTATTG 58.542 36.000 0.00 0.00 0.00 1.90
3881 4183 6.670695 ACCTGCAAAACAAAGAGGATTATT 57.329 33.333 0.00 0.00 0.00 1.40
3883 4185 5.221422 CCAACCTGCAAAACAAAGAGGATTA 60.221 40.000 0.00 0.00 0.00 1.75
3885 4187 3.070015 CCAACCTGCAAAACAAAGAGGAT 59.930 43.478 0.00 0.00 0.00 3.24
3892 4194 1.859302 ACCTCCAACCTGCAAAACAA 58.141 45.000 0.00 0.00 0.00 2.83
3920 4223 4.346127 ACGAGGGTTAGTCCTTTGTAAACT 59.654 41.667 0.00 0.00 38.02 2.66
3944 4247 3.833645 CCTGCGCCTGCTACGGTA 61.834 66.667 4.18 0.00 43.34 4.02
3956 4259 2.203070 GGTACCTCATGCCCTGCG 60.203 66.667 4.06 0.00 0.00 5.18
3989 4292 7.841956 AGTGTCTGAATAGTATTAGTGCTTGT 58.158 34.615 0.00 0.00 0.00 3.16
4080 4383 8.879342 TGTGAAAAACGGTGAATATGATTTTT 57.121 26.923 0.00 0.00 33.25 1.94
4178 4483 8.557450 AGTACAAATGTCAGTTTCCCCTATTAT 58.443 33.333 0.00 0.00 0.00 1.28
4294 4599 4.283467 TCTTACATTATGGGACGGATGGAG 59.717 45.833 0.00 0.00 0.00 3.86
4295 4600 4.039973 GTCTTACATTATGGGACGGATGGA 59.960 45.833 0.00 0.00 0.00 3.41
4296 4601 4.315803 GTCTTACATTATGGGACGGATGG 58.684 47.826 0.00 0.00 0.00 3.51
4297 4602 3.987868 CGTCTTACATTATGGGACGGATG 59.012 47.826 20.50 5.70 43.69 3.51
4298 4603 4.252971 CGTCTTACATTATGGGACGGAT 57.747 45.455 20.50 0.00 43.69 4.18
4299 4604 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
4302 4607 7.136289 TGAAAAACGTCTTACATTATGGGAC 57.864 36.000 0.00 1.75 0.00 4.46
4303 4608 7.574217 GCTTGAAAAACGTCTTACATTATGGGA 60.574 37.037 0.00 0.00 0.00 4.37
4304 4609 6.526674 GCTTGAAAAACGTCTTACATTATGGG 59.473 38.462 0.00 0.00 0.00 4.00
4305 4610 7.305474 AGCTTGAAAAACGTCTTACATTATGG 58.695 34.615 0.00 0.00 0.00 2.74
4306 4611 8.629986 CAAGCTTGAAAAACGTCTTACATTATG 58.370 33.333 22.31 0.00 0.00 1.90
4307 4612 8.349983 ACAAGCTTGAAAAACGTCTTACATTAT 58.650 29.630 32.50 0.00 0.00 1.28
4308 4613 7.699566 ACAAGCTTGAAAAACGTCTTACATTA 58.300 30.769 32.50 0.00 0.00 1.90
4309 4614 6.560711 ACAAGCTTGAAAAACGTCTTACATT 58.439 32.000 32.50 0.70 0.00 2.71
4310 4615 6.131544 ACAAGCTTGAAAAACGTCTTACAT 57.868 33.333 32.50 1.12 0.00 2.29
4311 4616 5.554822 ACAAGCTTGAAAAACGTCTTACA 57.445 34.783 32.50 0.00 0.00 2.41
4312 4617 6.864560 AAACAAGCTTGAAAAACGTCTTAC 57.135 33.333 32.50 0.00 0.00 2.34
4313 4618 8.238631 AGTTAAACAAGCTTGAAAAACGTCTTA 58.761 29.630 32.50 11.47 0.00 2.10
4314 4619 7.088272 AGTTAAACAAGCTTGAAAAACGTCTT 58.912 30.769 32.50 10.23 0.00 3.01
4315 4620 6.617879 AGTTAAACAAGCTTGAAAAACGTCT 58.382 32.000 32.50 15.39 0.00 4.18
4316 4621 6.864560 AGTTAAACAAGCTTGAAAAACGTC 57.135 33.333 32.50 13.63 0.00 4.34
4317 4622 6.400621 GCAAGTTAAACAAGCTTGAAAAACGT 60.401 34.615 32.50 23.22 41.31 3.99
4318 4623 5.951494 GCAAGTTAAACAAGCTTGAAAAACG 59.049 36.000 32.50 18.27 41.31 3.60
4319 4624 6.826612 TGCAAGTTAAACAAGCTTGAAAAAC 58.173 32.000 32.50 26.57 41.31 2.43
4320 4625 7.426929 TTGCAAGTTAAACAAGCTTGAAAAA 57.573 28.000 32.50 18.38 41.31 1.94
4321 4626 7.426929 TTTGCAAGTTAAACAAGCTTGAAAA 57.573 28.000 32.50 18.71 42.29 2.29
4322 4627 7.426929 TTTTGCAAGTTAAACAAGCTTGAAA 57.573 28.000 32.50 19.05 41.31 2.69
4323 4628 7.294473 GTTTTTGCAAGTTAAACAAGCTTGAA 58.706 30.769 32.50 13.98 41.31 2.69
4324 4629 6.400515 CGTTTTTGCAAGTTAAACAAGCTTGA 60.401 34.615 32.50 7.93 41.31 3.02
4325 4630 5.727592 CGTTTTTGCAAGTTAAACAAGCTTG 59.272 36.000 24.84 24.84 41.61 4.01
4326 4631 5.407084 ACGTTTTTGCAAGTTAAACAAGCTT 59.593 32.000 19.80 0.00 32.67 3.74
4327 4632 4.926832 ACGTTTTTGCAAGTTAAACAAGCT 59.073 33.333 19.80 0.00 32.67 3.74
4328 4633 5.061684 AGACGTTTTTGCAAGTTAAACAAGC 59.938 36.000 19.80 11.08 32.67 4.01
4329 4634 6.626199 AGACGTTTTTGCAAGTTAAACAAG 57.374 33.333 19.80 10.49 32.67 3.16
4330 4635 7.594015 TGTAAGACGTTTTTGCAAGTTAAACAA 59.406 29.630 19.80 0.53 32.67 2.83
4331 4636 7.082602 TGTAAGACGTTTTTGCAAGTTAAACA 58.917 30.769 19.80 9.14 32.67 2.83
4332 4637 7.495339 TGTAAGACGTTTTTGCAAGTTAAAC 57.505 32.000 13.02 13.02 0.00 2.01
4333 4638 8.587950 CAATGTAAGACGTTTTTGCAAGTTAAA 58.412 29.630 0.00 0.00 0.00 1.52
4334 4639 7.755822 ACAATGTAAGACGTTTTTGCAAGTTAA 59.244 29.630 0.00 0.00 0.00 2.01
4335 4640 7.219154 CACAATGTAAGACGTTTTTGCAAGTTA 59.781 33.333 0.00 0.00 0.00 2.24
4336 4641 6.034470 CACAATGTAAGACGTTTTTGCAAGTT 59.966 34.615 0.00 0.00 0.00 2.66
4337 4642 5.514914 CACAATGTAAGACGTTTTTGCAAGT 59.485 36.000 0.00 0.00 0.00 3.16
4338 4643 5.051774 CCACAATGTAAGACGTTTTTGCAAG 60.052 40.000 0.00 2.28 0.00 4.01
4339 4644 4.800993 CCACAATGTAAGACGTTTTTGCAA 59.199 37.500 0.00 0.00 0.00 4.08
4340 4645 4.355437 CCACAATGTAAGACGTTTTTGCA 58.645 39.130 0.00 1.87 0.00 4.08
4341 4646 3.733727 CCCACAATGTAAGACGTTTTTGC 59.266 43.478 0.00 0.00 0.00 3.68
4342 4647 4.973663 GTCCCACAATGTAAGACGTTTTTG 59.026 41.667 0.00 0.00 0.00 2.44
4343 4648 4.260866 CGTCCCACAATGTAAGACGTTTTT 60.261 41.667 21.67 0.00 43.89 1.94
4344 4649 3.249080 CGTCCCACAATGTAAGACGTTTT 59.751 43.478 21.67 0.00 43.89 2.43
4345 4650 2.803956 CGTCCCACAATGTAAGACGTTT 59.196 45.455 21.67 0.00 43.89 3.60
4346 4651 2.409975 CGTCCCACAATGTAAGACGTT 58.590 47.619 21.67 0.00 43.89 3.99
4347 4652 1.337447 CCGTCCCACAATGTAAGACGT 60.337 52.381 25.28 0.00 46.62 4.34
4349 4654 2.618053 CTCCGTCCCACAATGTAAGAC 58.382 52.381 5.24 5.24 0.00 3.01
4350 4655 1.553248 CCTCCGTCCCACAATGTAAGA 59.447 52.381 0.00 0.00 0.00 2.10
4351 4656 1.406887 CCCTCCGTCCCACAATGTAAG 60.407 57.143 0.00 0.00 0.00 2.34
4352 4657 0.616371 CCCTCCGTCCCACAATGTAA 59.384 55.000 0.00 0.00 0.00 2.41
4353 4658 0.252330 TCCCTCCGTCCCACAATGTA 60.252 55.000 0.00 0.00 0.00 2.29
4354 4659 1.537889 TCCCTCCGTCCCACAATGT 60.538 57.895 0.00 0.00 0.00 2.71
4355 4660 1.221840 CTCCCTCCGTCCCACAATG 59.778 63.158 0.00 0.00 0.00 2.82
4356 4661 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
4357 4662 0.178926 TTACTCCCTCCGTCCCACAA 60.179 55.000 0.00 0.00 0.00 3.33
4358 4663 0.901580 GTTACTCCCTCCGTCCCACA 60.902 60.000 0.00 0.00 0.00 4.17
4359 4664 0.614134 AGTTACTCCCTCCGTCCCAC 60.614 60.000 0.00 0.00 0.00 4.61
4360 4665 0.613853 CAGTTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
4361 4666 1.328430 CCAGTTACTCCCTCCGTCCC 61.328 65.000 0.00 0.00 0.00 4.46
4362 4667 1.957765 GCCAGTTACTCCCTCCGTCC 61.958 65.000 0.00 0.00 0.00 4.79
4363 4668 1.255667 TGCCAGTTACTCCCTCCGTC 61.256 60.000 0.00 0.00 0.00 4.79
4364 4669 0.617820 ATGCCAGTTACTCCCTCCGT 60.618 55.000 0.00 0.00 0.00 4.69
4365 4670 0.541863 AATGCCAGTTACTCCCTCCG 59.458 55.000 0.00 0.00 0.00 4.63
4366 4671 2.755103 CAAAATGCCAGTTACTCCCTCC 59.245 50.000 0.00 0.00 0.00 4.30
4367 4672 2.164422 GCAAAATGCCAGTTACTCCCTC 59.836 50.000 0.00 0.00 37.42 4.30
4368 4673 2.171003 GCAAAATGCCAGTTACTCCCT 58.829 47.619 0.00 0.00 37.42 4.20
4369 4674 1.892474 TGCAAAATGCCAGTTACTCCC 59.108 47.619 0.00 0.00 44.23 4.30
4370 4675 3.874392 ATGCAAAATGCCAGTTACTCC 57.126 42.857 0.00 0.00 44.23 3.85
4371 4676 7.026631 TGTATATGCAAAATGCCAGTTACTC 57.973 36.000 0.00 0.00 44.23 2.59
4372 4677 7.403312 TTGTATATGCAAAATGCCAGTTACT 57.597 32.000 3.51 0.00 44.23 2.24
4373 4678 8.647143 ATTTGTATATGCAAAATGCCAGTTAC 57.353 30.769 20.62 0.00 44.23 2.50
4374 4679 9.311916 GAATTTGTATATGCAAAATGCCAGTTA 57.688 29.630 20.62 0.00 44.23 2.24
4375 4680 8.042515 AGAATTTGTATATGCAAAATGCCAGTT 58.957 29.630 20.62 10.08 44.23 3.16
4376 4681 7.558604 AGAATTTGTATATGCAAAATGCCAGT 58.441 30.769 20.62 2.33 44.23 4.00
4377 4682 8.332464 CAAGAATTTGTATATGCAAAATGCCAG 58.668 33.333 20.62 7.91 44.23 4.85
4378 4683 7.280428 CCAAGAATTTGTATATGCAAAATGCCA 59.720 33.333 20.62 0.00 41.03 4.92
4431 4739 6.313164 GCACCTCAGTTAGTAAGTTGGATTAC 59.687 42.308 11.50 0.00 36.16 1.89
4432 4740 6.212791 AGCACCTCAGTTAGTAAGTTGGATTA 59.787 38.462 11.50 0.00 0.00 1.75
4442 4751 4.451629 GCAAGTAGCACCTCAGTTAGTA 57.548 45.455 0.00 0.00 44.79 1.82
4455 4764 2.939103 CAGGTAAGTCCATGCAAGTAGC 59.061 50.000 0.00 0.00 40.69 3.58
4458 4767 1.985159 TCCAGGTAAGTCCATGCAAGT 59.015 47.619 0.00 0.00 39.02 3.16
4459 4768 2.636830 CTCCAGGTAAGTCCATGCAAG 58.363 52.381 0.00 0.00 39.02 4.01
4515 4858 1.425428 CCAACTCGCTGCGAATTCC 59.575 57.895 25.86 0.00 34.74 3.01
4533 4876 3.012518 ACCATCAGTTCTTGTATGCAGC 58.987 45.455 0.00 0.00 0.00 5.25
4590 4938 2.617308 CCATAAGCTGGCTGACAAGATG 59.383 50.000 0.00 0.00 38.47 2.90
4664 5012 9.730705 TTGCTCTCTTGATATCTAAATTATGGG 57.269 33.333 3.98 0.00 0.00 4.00
4688 5037 3.525268 AGCTTTCTGTGTGGGTTTTTG 57.475 42.857 0.00 0.00 0.00 2.44
4692 5041 3.857157 TTCTAGCTTTCTGTGTGGGTT 57.143 42.857 0.00 0.00 0.00 4.11
4790 5139 5.391310 GCTTGATGTGTGTAAGTTGATCCTG 60.391 44.000 0.00 0.00 0.00 3.86
4813 5162 2.341101 TGGAAGACGACCCGAGAGC 61.341 63.158 0.00 0.00 0.00 4.09
4818 5167 1.100510 TCATAGTGGAAGACGACCCG 58.899 55.000 0.00 0.00 0.00 5.28
4859 5209 7.492344 TGATATGATATTGATATGACACACCGC 59.508 37.037 0.00 0.00 0.00 5.68
4906 5256 2.503382 GGACGATCCTCCTCCTGCC 61.503 68.421 3.67 0.00 32.53 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.