Multiple sequence alignment - TraesCS3A01G352100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G352100 chr3A 100.000 2601 0 0 1 2601 600314418 600317018 0.000000e+00 4804
1 TraesCS3A01G352100 chr3A 83.173 208 22 8 109 315 600086464 600086659 7.400000e-41 178
2 TraesCS3A01G352100 chr3D 89.082 1612 82 31 467 2022 457401355 457402928 0.000000e+00 1916
3 TraesCS3A01G352100 chr3D 96.560 407 11 2 2196 2601 457403058 457403462 0.000000e+00 671
4 TraesCS3A01G352100 chr3D 90.351 114 7 2 2006 2115 457402946 457403059 2.090000e-31 147
5 TraesCS3A01G352100 chr3D 96.471 85 2 1 2114 2197 279927794 279927710 3.490000e-29 139
6 TraesCS3A01G352100 chr3B 87.358 1669 114 37 479 2115 605012359 605013962 0.000000e+00 1823
7 TraesCS3A01G352100 chr3B 94.279 402 17 3 2196 2594 605013961 605014359 6.150000e-171 610
8 TraesCS3A01G352100 chr3B 90.058 171 10 4 108 276 605012198 605012363 5.640000e-52 215
9 TraesCS3A01G352100 chr3B 82.212 208 20 8 109 315 604773911 604774102 2.070000e-36 163
10 TraesCS3A01G352100 chr7B 95.506 89 2 2 2114 2200 443080911 443080823 9.700000e-30 141
11 TraesCS3A01G352100 chr6A 94.186 86 4 1 2114 2198 457397430 457397515 2.100000e-26 130
12 TraesCS3A01G352100 chr4B 90.625 96 5 2 2114 2205 660583457 660583552 9.770000e-25 124
13 TraesCS3A01G352100 chr7A 91.765 85 7 0 2114 2198 50004309 50004225 4.550000e-23 119
14 TraesCS3A01G352100 chr2D 90.698 86 6 2 2114 2197 545944847 545944762 2.120000e-21 113
15 TraesCS3A01G352100 chr4A 89.773 88 8 1 2114 2200 318044505 318044418 7.610000e-21 111
16 TraesCS3A01G352100 chr6D 86.000 100 11 3 2114 2212 414526173 414526270 1.270000e-18 104
17 TraesCS3A01G352100 chr2B 87.234 94 9 3 2114 2205 210826637 210826729 1.270000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G352100 chr3A 600314418 600317018 2600 False 4804.000000 4804 100.000000 1 2601 1 chr3A.!!$F2 2600
1 TraesCS3A01G352100 chr3D 457401355 457403462 2107 False 911.333333 1916 91.997667 467 2601 3 chr3D.!!$F1 2134
2 TraesCS3A01G352100 chr3B 605012198 605014359 2161 False 882.666667 1823 90.565000 108 2594 3 chr3B.!!$F2 2486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 300 0.037326 TGTCCCTCTGCGTGATGAAC 60.037 55.0 0.0 0.0 0.0 3.18 F
1089 1104 0.032952 TTCCACTTCCACTTCCGTCG 59.967 55.0 0.0 0.0 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1214 1256 0.108329 CCGTACTTGGAGCCGATGTT 60.108 55.0 0.0 0.0 0.0 2.71 R
2112 2214 0.178926 TTGTGGGACGGAGGGAGTAA 60.179 55.0 0.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.636150 ATGTACTCCATCAAGATTTTCCTTG 57.364 36.000 0.00 0.00 43.58 3.61
29 30 6.542821 TGTACTCCATCAAGATTTTCCTTGT 58.457 36.000 0.00 0.00 42.95 3.16
30 31 5.972107 ACTCCATCAAGATTTTCCTTGTG 57.028 39.130 0.00 0.00 42.95 3.33
31 32 5.388654 ACTCCATCAAGATTTTCCTTGTGT 58.611 37.500 0.00 0.00 42.95 3.72
32 33 5.835280 ACTCCATCAAGATTTTCCTTGTGTT 59.165 36.000 0.00 0.00 42.95 3.32
33 34 7.004086 ACTCCATCAAGATTTTCCTTGTGTTA 58.996 34.615 0.00 0.00 42.95 2.41
34 35 7.505585 ACTCCATCAAGATTTTCCTTGTGTTAA 59.494 33.333 0.00 0.00 42.95 2.01
35 36 7.885297 TCCATCAAGATTTTCCTTGTGTTAAG 58.115 34.615 0.00 0.00 42.95 1.85
36 37 7.039784 TCCATCAAGATTTTCCTTGTGTTAAGG 60.040 37.037 0.00 0.00 42.95 2.69
37 38 6.648879 TCAAGATTTTCCTTGTGTTAAGGG 57.351 37.500 5.91 0.00 42.95 3.95
38 39 6.133356 TCAAGATTTTCCTTGTGTTAAGGGT 58.867 36.000 5.91 0.00 42.95 4.34
39 40 7.291566 TCAAGATTTTCCTTGTGTTAAGGGTA 58.708 34.615 5.91 0.00 42.95 3.69
40 41 7.947890 TCAAGATTTTCCTTGTGTTAAGGGTAT 59.052 33.333 5.91 0.00 42.95 2.73
41 42 8.585018 CAAGATTTTCCTTGTGTTAAGGGTATT 58.415 33.333 5.91 0.00 38.87 1.89
42 43 8.349568 AGATTTTCCTTGTGTTAAGGGTATTC 57.650 34.615 5.91 0.44 37.99 1.75
43 44 7.947890 AGATTTTCCTTGTGTTAAGGGTATTCA 59.052 33.333 5.91 0.00 37.99 2.57
44 45 7.519032 TTTTCCTTGTGTTAAGGGTATTCAG 57.481 36.000 5.91 0.00 37.99 3.02
45 46 5.174037 TCCTTGTGTTAAGGGTATTCAGG 57.826 43.478 5.91 0.00 37.99 3.86
46 47 4.847512 TCCTTGTGTTAAGGGTATTCAGGA 59.152 41.667 5.91 0.00 37.99 3.86
47 48 5.311121 TCCTTGTGTTAAGGGTATTCAGGAA 59.689 40.000 5.91 0.00 37.99 3.36
48 49 5.414765 CCTTGTGTTAAGGGTATTCAGGAAC 59.585 44.000 0.00 0.00 33.79 3.62
49 50 5.570205 TGTGTTAAGGGTATTCAGGAACA 57.430 39.130 0.00 0.00 0.00 3.18
50 51 5.556915 TGTGTTAAGGGTATTCAGGAACAG 58.443 41.667 0.00 0.00 0.00 3.16
51 52 5.308497 TGTGTTAAGGGTATTCAGGAACAGA 59.692 40.000 0.00 0.00 0.00 3.41
52 53 5.875359 GTGTTAAGGGTATTCAGGAACAGAG 59.125 44.000 0.00 0.00 0.00 3.35
53 54 5.045869 TGTTAAGGGTATTCAGGAACAGAGG 60.046 44.000 0.00 0.00 0.00 3.69
54 55 2.482494 AGGGTATTCAGGAACAGAGGG 58.518 52.381 0.00 0.00 0.00 4.30
55 56 2.197465 GGGTATTCAGGAACAGAGGGT 58.803 52.381 0.00 0.00 0.00 4.34
56 57 2.092914 GGGTATTCAGGAACAGAGGGTG 60.093 54.545 0.00 0.00 0.00 4.61
57 58 2.572104 GGTATTCAGGAACAGAGGGTGT 59.428 50.000 0.00 0.00 43.24 4.16
58 59 3.773119 GGTATTCAGGAACAGAGGGTGTA 59.227 47.826 0.00 0.00 39.03 2.90
59 60 3.983044 ATTCAGGAACAGAGGGTGTAC 57.017 47.619 0.00 0.00 39.03 2.90
60 61 1.640917 TCAGGAACAGAGGGTGTACC 58.359 55.000 0.00 0.00 39.03 3.34
61 62 1.132977 TCAGGAACAGAGGGTGTACCA 60.133 52.381 3.11 0.00 43.89 3.25
62 63 1.697432 CAGGAACAGAGGGTGTACCAA 59.303 52.381 3.11 0.00 43.89 3.67
63 64 2.305927 CAGGAACAGAGGGTGTACCAAT 59.694 50.000 3.11 0.00 43.89 3.16
64 65 2.986728 AGGAACAGAGGGTGTACCAATT 59.013 45.455 3.11 0.00 43.89 2.32
65 66 4.019681 CAGGAACAGAGGGTGTACCAATTA 60.020 45.833 3.11 0.00 43.89 1.40
66 67 4.788617 AGGAACAGAGGGTGTACCAATTAT 59.211 41.667 3.11 0.00 43.89 1.28
67 68 5.968167 AGGAACAGAGGGTGTACCAATTATA 59.032 40.000 3.11 0.00 43.89 0.98
68 69 6.053650 GGAACAGAGGGTGTACCAATTATAC 58.946 44.000 3.11 0.00 43.89 1.47
69 70 5.272283 ACAGAGGGTGTACCAATTATACG 57.728 43.478 3.11 0.00 43.89 3.06
70 71 4.056050 CAGAGGGTGTACCAATTATACGC 58.944 47.826 3.11 4.68 43.89 4.42
71 72 3.707611 AGAGGGTGTACCAATTATACGCA 59.292 43.478 12.28 0.00 43.89 5.24
72 73 4.347000 AGAGGGTGTACCAATTATACGCAT 59.653 41.667 12.28 3.49 43.89 4.73
73 74 4.638304 AGGGTGTACCAATTATACGCATC 58.362 43.478 12.28 6.22 43.89 3.91
74 75 3.749609 GGGTGTACCAATTATACGCATCC 59.250 47.826 12.28 4.53 39.85 3.51
75 76 4.504340 GGGTGTACCAATTATACGCATCCT 60.504 45.833 12.28 0.00 39.85 3.24
76 77 4.689345 GGTGTACCAATTATACGCATCCTC 59.311 45.833 12.28 0.00 35.22 3.71
77 78 5.294356 GTGTACCAATTATACGCATCCTCA 58.706 41.667 7.42 0.00 33.99 3.86
78 79 5.176958 GTGTACCAATTATACGCATCCTCAC 59.823 44.000 7.42 0.00 33.99 3.51
79 80 4.415881 ACCAATTATACGCATCCTCACA 57.584 40.909 0.00 0.00 0.00 3.58
80 81 4.776349 ACCAATTATACGCATCCTCACAA 58.224 39.130 0.00 0.00 0.00 3.33
81 82 5.189928 ACCAATTATACGCATCCTCACAAA 58.810 37.500 0.00 0.00 0.00 2.83
82 83 5.650266 ACCAATTATACGCATCCTCACAAAA 59.350 36.000 0.00 0.00 0.00 2.44
83 84 6.183360 ACCAATTATACGCATCCTCACAAAAG 60.183 38.462 0.00 0.00 0.00 2.27
84 85 6.038161 CCAATTATACGCATCCTCACAAAAGA 59.962 38.462 0.00 0.00 0.00 2.52
85 86 7.415095 CCAATTATACGCATCCTCACAAAAGAA 60.415 37.037 0.00 0.00 0.00 2.52
86 87 7.624360 ATTATACGCATCCTCACAAAAGAAA 57.376 32.000 0.00 0.00 0.00 2.52
87 88 5.957842 ATACGCATCCTCACAAAAGAAAA 57.042 34.783 0.00 0.00 0.00 2.29
88 89 4.647424 ACGCATCCTCACAAAAGAAAAA 57.353 36.364 0.00 0.00 0.00 1.94
89 90 4.610945 ACGCATCCTCACAAAAGAAAAAG 58.389 39.130 0.00 0.00 0.00 2.27
90 91 4.097892 ACGCATCCTCACAAAAGAAAAAGT 59.902 37.500 0.00 0.00 0.00 2.66
91 92 4.442073 CGCATCCTCACAAAAGAAAAAGTG 59.558 41.667 0.00 0.00 0.00 3.16
92 93 5.351458 GCATCCTCACAAAAGAAAAAGTGT 58.649 37.500 0.00 0.00 33.84 3.55
93 94 6.503524 GCATCCTCACAAAAGAAAAAGTGTA 58.496 36.000 0.00 0.00 33.84 2.90
94 95 6.978080 GCATCCTCACAAAAGAAAAAGTGTAA 59.022 34.615 0.00 0.00 33.84 2.41
95 96 7.043391 GCATCCTCACAAAAGAAAAAGTGTAAC 60.043 37.037 0.00 0.00 33.84 2.50
140 141 0.320683 TGTGGAATCTGCAGGACGTG 60.321 55.000 15.13 0.00 0.00 4.49
179 180 2.357517 AAGAAGCAGGACGGCGTG 60.358 61.111 21.19 6.59 39.27 5.34
202 203 2.232452 CCTTTGTGATCGAGGAGTGAGT 59.768 50.000 0.00 0.00 32.11 3.41
203 204 3.249091 CTTTGTGATCGAGGAGTGAGTG 58.751 50.000 0.00 0.00 0.00 3.51
204 205 2.200373 TGTGATCGAGGAGTGAGTGA 57.800 50.000 0.00 0.00 0.00 3.41
205 206 2.087646 TGTGATCGAGGAGTGAGTGAG 58.912 52.381 0.00 0.00 0.00 3.51
236 237 3.409856 CGACCTGGGCGCATAAAG 58.590 61.111 9.98 0.00 0.00 1.85
246 247 2.410469 GCATAAAGCCCAGCGCAG 59.590 61.111 11.47 0.00 41.38 5.18
279 280 4.059459 CGCTGTTCGTGCCACGTC 62.059 66.667 17.83 12.01 43.14 4.34
280 281 2.661866 GCTGTTCGTGCCACGTCT 60.662 61.111 17.83 0.00 43.14 4.18
281 282 2.943345 GCTGTTCGTGCCACGTCTG 61.943 63.158 17.83 15.17 43.14 3.51
282 283 1.591594 CTGTTCGTGCCACGTCTGT 60.592 57.895 17.83 0.00 43.14 3.41
283 284 1.548973 CTGTTCGTGCCACGTCTGTC 61.549 60.000 17.83 5.24 43.14 3.51
284 285 2.028484 TTCGTGCCACGTCTGTCC 59.972 61.111 17.83 0.00 43.14 4.02
285 286 3.509137 TTCGTGCCACGTCTGTCCC 62.509 63.158 17.83 0.00 43.14 4.46
286 287 3.991051 CGTGCCACGTCTGTCCCT 61.991 66.667 9.53 0.00 36.74 4.20
287 288 2.048127 GTGCCACGTCTGTCCCTC 60.048 66.667 0.00 0.00 0.00 4.30
288 289 2.203640 TGCCACGTCTGTCCCTCT 60.204 61.111 0.00 0.00 0.00 3.69
289 290 2.262915 GCCACGTCTGTCCCTCTG 59.737 66.667 0.00 0.00 0.00 3.35
290 291 2.262915 CCACGTCTGTCCCTCTGC 59.737 66.667 0.00 0.00 0.00 4.26
291 292 2.126307 CACGTCTGTCCCTCTGCG 60.126 66.667 0.00 0.00 0.00 5.18
292 293 2.597805 ACGTCTGTCCCTCTGCGT 60.598 61.111 0.00 0.00 0.00 5.24
293 294 2.126307 CGTCTGTCCCTCTGCGTG 60.126 66.667 0.00 0.00 0.00 5.34
294 295 2.626780 CGTCTGTCCCTCTGCGTGA 61.627 63.158 0.00 0.00 0.00 4.35
295 296 1.893786 GTCTGTCCCTCTGCGTGAT 59.106 57.895 0.00 0.00 0.00 3.06
296 297 0.459237 GTCTGTCCCTCTGCGTGATG 60.459 60.000 0.00 0.00 0.00 3.07
297 298 0.611896 TCTGTCCCTCTGCGTGATGA 60.612 55.000 0.00 0.00 0.00 2.92
298 299 0.247460 CTGTCCCTCTGCGTGATGAA 59.753 55.000 0.00 0.00 0.00 2.57
299 300 0.037326 TGTCCCTCTGCGTGATGAAC 60.037 55.000 0.00 0.00 0.00 3.18
300 301 0.247736 GTCCCTCTGCGTGATGAACT 59.752 55.000 0.00 0.00 0.00 3.01
301 302 0.976641 TCCCTCTGCGTGATGAACTT 59.023 50.000 0.00 0.00 0.00 2.66
302 303 1.066858 TCCCTCTGCGTGATGAACTTC 60.067 52.381 0.00 0.00 0.00 3.01
303 304 1.363744 CCTCTGCGTGATGAACTTCC 58.636 55.000 0.00 0.00 0.00 3.46
304 305 1.338105 CCTCTGCGTGATGAACTTCCA 60.338 52.381 0.00 0.00 0.00 3.53
305 306 1.998315 CTCTGCGTGATGAACTTCCAG 59.002 52.381 0.00 0.00 0.00 3.86
306 307 1.344438 TCTGCGTGATGAACTTCCAGT 59.656 47.619 0.00 0.00 0.00 4.00
307 308 1.462283 CTGCGTGATGAACTTCCAGTG 59.538 52.381 0.00 0.00 0.00 3.66
308 309 1.202639 TGCGTGATGAACTTCCAGTGT 60.203 47.619 0.00 0.00 0.00 3.55
309 310 1.195448 GCGTGATGAACTTCCAGTGTG 59.805 52.381 0.00 0.00 0.00 3.82
310 311 2.483876 CGTGATGAACTTCCAGTGTGT 58.516 47.619 0.00 0.00 0.00 3.72
311 312 3.649073 CGTGATGAACTTCCAGTGTGTA 58.351 45.455 0.00 0.00 0.00 2.90
312 313 4.245660 CGTGATGAACTTCCAGTGTGTAT 58.754 43.478 0.00 0.00 0.00 2.29
313 314 4.091945 CGTGATGAACTTCCAGTGTGTATG 59.908 45.833 0.00 0.00 0.00 2.39
314 315 4.997395 GTGATGAACTTCCAGTGTGTATGT 59.003 41.667 0.00 0.00 0.00 2.29
315 316 6.163476 GTGATGAACTTCCAGTGTGTATGTA 58.837 40.000 0.00 0.00 0.00 2.29
316 317 6.818644 GTGATGAACTTCCAGTGTGTATGTAT 59.181 38.462 0.00 0.00 0.00 2.29
317 318 6.818142 TGATGAACTTCCAGTGTGTATGTATG 59.182 38.462 0.00 0.00 0.00 2.39
318 319 6.109156 TGAACTTCCAGTGTGTATGTATGT 57.891 37.500 0.00 0.00 0.00 2.29
319 320 7.234661 TGAACTTCCAGTGTGTATGTATGTA 57.765 36.000 0.00 0.00 0.00 2.29
320 321 7.847096 TGAACTTCCAGTGTGTATGTATGTAT 58.153 34.615 0.00 0.00 0.00 2.29
321 322 7.763985 TGAACTTCCAGTGTGTATGTATGTATG 59.236 37.037 0.00 0.00 0.00 2.39
322 323 7.182817 ACTTCCAGTGTGTATGTATGTATGT 57.817 36.000 0.00 0.00 0.00 2.29
323 324 8.301252 ACTTCCAGTGTGTATGTATGTATGTA 57.699 34.615 0.00 0.00 0.00 2.29
324 325 8.924303 ACTTCCAGTGTGTATGTATGTATGTAT 58.076 33.333 0.00 0.00 0.00 2.29
325 326 9.196552 CTTCCAGTGTGTATGTATGTATGTATG 57.803 37.037 0.00 0.00 0.00 2.39
326 327 8.245195 TCCAGTGTGTATGTATGTATGTATGT 57.755 34.615 0.00 0.00 0.00 2.29
327 328 9.357161 TCCAGTGTGTATGTATGTATGTATGTA 57.643 33.333 0.00 0.00 0.00 2.29
345 346 8.101654 TGTATGTATGTATGTATGTACTCGCA 57.898 34.615 0.00 0.00 0.00 5.10
346 347 8.569641 TGTATGTATGTATGTATGTACTCGCAA 58.430 33.333 0.00 0.00 0.00 4.85
347 348 9.569167 GTATGTATGTATGTATGTACTCGCAAT 57.431 33.333 0.00 0.00 0.00 3.56
354 355 9.401873 TGTATGTATGTACTCGCAATAATGTAC 57.598 33.333 0.00 0.00 36.69 2.90
355 356 9.622004 GTATGTATGTACTCGCAATAATGTACT 57.378 33.333 0.00 0.00 36.98 2.73
356 357 7.924103 TGTATGTACTCGCAATAATGTACTG 57.076 36.000 0.00 0.00 36.98 2.74
357 358 5.907197 ATGTACTCGCAATAATGTACTGC 57.093 39.130 0.00 0.00 36.98 4.40
358 359 5.006153 TGTACTCGCAATAATGTACTGCT 57.994 39.130 2.99 0.00 36.98 4.24
359 360 6.139048 TGTACTCGCAATAATGTACTGCTA 57.861 37.500 2.99 0.00 36.98 3.49
360 361 5.975344 TGTACTCGCAATAATGTACTGCTAC 59.025 40.000 2.99 0.51 36.98 3.58
361 362 4.042398 ACTCGCAATAATGTACTGCTACG 58.958 43.478 2.99 0.00 33.82 3.51
362 363 4.036567 TCGCAATAATGTACTGCTACGT 57.963 40.909 0.00 0.00 33.82 3.57
363 364 5.172460 TCGCAATAATGTACTGCTACGTA 57.828 39.130 0.00 0.00 33.82 3.57
364 365 4.971830 TCGCAATAATGTACTGCTACGTAC 59.028 41.667 0.00 5.09 40.06 3.67
365 366 4.974275 CGCAATAATGTACTGCTACGTACT 59.026 41.667 0.00 0.00 40.25 2.73
366 367 5.108368 CGCAATAATGTACTGCTACGTACTG 60.108 44.000 0.00 0.00 40.25 2.74
367 368 5.332355 GCAATAATGTACTGCTACGTACTGC 60.332 44.000 0.00 0.00 40.25 4.40
368 369 3.861276 AATGTACTGCTACGTACTGCA 57.139 42.857 8.95 8.95 40.25 4.41
369 370 3.861276 ATGTACTGCTACGTACTGCAA 57.139 42.857 10.31 0.00 40.25 4.08
370 371 3.211803 TGTACTGCTACGTACTGCAAG 57.788 47.619 10.31 7.51 40.25 4.01
371 372 1.918609 GTACTGCTACGTACTGCAAGC 59.081 52.381 10.31 5.01 38.81 4.01
372 373 0.389948 ACTGCTACGTACTGCAAGCC 60.390 55.000 10.31 0.00 38.81 4.35
373 374 0.389817 CTGCTACGTACTGCAAGCCA 60.390 55.000 10.31 0.00 38.81 4.75
374 375 0.249120 TGCTACGTACTGCAAGCCAT 59.751 50.000 7.01 0.00 37.60 4.40
375 376 1.338674 TGCTACGTACTGCAAGCCATT 60.339 47.619 7.01 0.00 37.60 3.16
376 377 1.737793 GCTACGTACTGCAAGCCATTT 59.262 47.619 2.18 0.00 37.60 2.32
377 378 2.476185 GCTACGTACTGCAAGCCATTTG 60.476 50.000 2.18 0.00 37.60 2.32
378 379 1.604604 ACGTACTGCAAGCCATTTGT 58.395 45.000 0.00 0.00 39.08 2.83
379 380 2.773487 ACGTACTGCAAGCCATTTGTA 58.227 42.857 0.00 0.00 39.08 2.41
380 381 3.343617 ACGTACTGCAAGCCATTTGTAT 58.656 40.909 0.00 0.00 39.08 2.29
381 382 4.509616 ACGTACTGCAAGCCATTTGTATA 58.490 39.130 0.00 0.00 39.08 1.47
382 383 4.331717 ACGTACTGCAAGCCATTTGTATAC 59.668 41.667 0.00 0.00 39.08 1.47
383 384 4.550063 CGTACTGCAAGCCATTTGTATACG 60.550 45.833 0.00 0.00 39.08 3.06
384 385 3.343617 ACTGCAAGCCATTTGTATACGT 58.656 40.909 0.00 0.00 39.08 3.57
385 386 4.509616 ACTGCAAGCCATTTGTATACGTA 58.490 39.130 0.00 0.00 39.08 3.57
386 387 4.331717 ACTGCAAGCCATTTGTATACGTAC 59.668 41.667 0.00 0.00 39.08 3.67
387 388 4.509616 TGCAAGCCATTTGTATACGTACT 58.490 39.130 0.00 0.00 39.08 2.73
388 389 4.938832 TGCAAGCCATTTGTATACGTACTT 59.061 37.500 0.00 0.00 39.08 2.24
389 390 6.107343 TGCAAGCCATTTGTATACGTACTTA 58.893 36.000 0.00 0.00 39.08 2.24
390 391 6.764085 TGCAAGCCATTTGTATACGTACTTAT 59.236 34.615 0.00 0.00 39.08 1.73
391 392 7.281324 TGCAAGCCATTTGTATACGTACTTATT 59.719 33.333 0.00 0.00 39.08 1.40
392 393 8.767085 GCAAGCCATTTGTATACGTACTTATTA 58.233 33.333 0.00 0.00 39.08 0.98
406 407 4.857871 ACTTATTACGTAGTACGCGTCA 57.142 40.909 18.63 10.95 45.76 4.35
407 408 4.826500 ACTTATTACGTAGTACGCGTCAG 58.173 43.478 18.63 13.69 45.76 3.51
408 409 2.096799 ATTACGTAGTACGCGTCAGC 57.903 50.000 18.63 7.76 45.76 4.26
409 410 0.096976 TTACGTAGTACGCGTCAGCC 59.903 55.000 18.63 1.97 45.76 4.85
410 411 2.646862 CGTAGTACGCGTCAGCCG 60.647 66.667 18.63 11.18 41.18 5.52
438 439 2.199236 GGCGTACCCTTATTTGAGTCG 58.801 52.381 0.00 0.00 0.00 4.18
439 440 1.591619 GCGTACCCTTATTTGAGTCGC 59.408 52.381 0.00 0.00 34.93 5.19
440 441 2.737679 GCGTACCCTTATTTGAGTCGCT 60.738 50.000 0.00 0.00 38.46 4.93
441 442 2.858344 CGTACCCTTATTTGAGTCGCTG 59.142 50.000 0.00 0.00 0.00 5.18
442 443 3.675228 CGTACCCTTATTTGAGTCGCTGT 60.675 47.826 0.00 0.00 0.00 4.40
443 444 3.418684 ACCCTTATTTGAGTCGCTGTT 57.581 42.857 0.00 0.00 0.00 3.16
444 445 3.074412 ACCCTTATTTGAGTCGCTGTTG 58.926 45.455 0.00 0.00 0.00 3.33
445 446 2.159517 CCCTTATTTGAGTCGCTGTTGC 60.160 50.000 0.00 0.00 0.00 4.17
446 447 2.744202 CCTTATTTGAGTCGCTGTTGCT 59.256 45.455 0.00 0.00 36.97 3.91
447 448 3.425359 CCTTATTTGAGTCGCTGTTGCTG 60.425 47.826 0.00 0.00 36.97 4.41
448 449 0.239347 ATTTGAGTCGCTGTTGCTGC 59.761 50.000 0.00 0.00 36.97 5.25
449 450 0.815213 TTTGAGTCGCTGTTGCTGCT 60.815 50.000 0.00 0.00 36.97 4.24
450 451 1.501337 TTGAGTCGCTGTTGCTGCTG 61.501 55.000 0.00 0.00 36.97 4.41
451 452 1.665916 GAGTCGCTGTTGCTGCTGA 60.666 57.895 0.00 0.00 36.97 4.26
452 453 1.895280 GAGTCGCTGTTGCTGCTGAC 61.895 60.000 0.00 0.29 36.97 3.51
453 454 2.108771 TCGCTGTTGCTGCTGACA 59.891 55.556 0.00 5.27 36.97 3.58
454 455 1.523484 TCGCTGTTGCTGCTGACAA 60.523 52.632 0.00 0.00 36.97 3.18
455 456 1.082300 CGCTGTTGCTGCTGACAAG 60.082 57.895 0.00 0.24 36.97 3.16
693 699 3.818787 GCCCGCAATGGTCAGCAG 61.819 66.667 0.00 0.00 35.15 4.24
696 702 2.758089 CCGCAATGGTCAGCAGAGC 61.758 63.158 0.72 0.72 42.53 4.09
744 750 1.908066 GCGCCCCCGATTAATTAGCG 61.908 60.000 0.00 8.22 44.54 4.26
757 763 9.367444 CCGATTAATTAGCGAGGACTTTATATT 57.633 33.333 10.31 0.00 0.00 1.28
809 815 2.954753 GCCGGACGACAAAGTGCTG 61.955 63.158 5.05 0.00 0.00 4.41
821 827 5.163784 CGACAAAGTGCTGCTAGTACTACTA 60.164 44.000 0.00 0.00 40.32 1.82
838 844 1.153369 TAGTACTCCCCGTCCGTCG 60.153 63.158 0.00 0.00 39.52 5.12
998 1013 4.029186 CCGACCGTCGTTCGTCCA 62.029 66.667 19.13 0.00 38.40 4.02
999 1014 2.177531 CGACCGTCGTTCGTCCAT 59.822 61.111 12.91 0.00 37.94 3.41
1081 1096 0.955919 CCTTCCGCTTCCACTTCCAC 60.956 60.000 0.00 0.00 0.00 4.02
1086 1101 1.291877 CGCTTCCACTTCCACTTCCG 61.292 60.000 0.00 0.00 0.00 4.30
1089 1104 0.032952 TTCCACTTCCACTTCCGTCG 59.967 55.000 0.00 0.00 0.00 5.12
1094 1109 2.473664 CTTCCACTTCCGTCGACGCT 62.474 60.000 31.73 10.88 38.18 5.07
1099 1118 1.153823 CTTCCGTCGACGCTTCCAT 60.154 57.895 31.73 0.00 38.18 3.41
1106 1125 0.457853 TCGACGCTTCCATTTCTCCG 60.458 55.000 0.00 0.00 0.00 4.63
1126 1145 3.174788 GGCGACGGGTTCATTGAC 58.825 61.111 0.00 0.00 0.00 3.18
1133 1152 4.637771 GGTTCATTGACCCCTCCG 57.362 61.111 0.00 0.00 33.41 4.63
1134 1153 1.077716 GGTTCATTGACCCCTCCGG 60.078 63.158 0.00 0.00 33.41 5.14
1143 1162 3.083997 CCCCTCCGGTTCCTCCTG 61.084 72.222 0.00 0.00 0.00 3.86
1144 1163 3.083997 CCCTCCGGTTCCTCCTGG 61.084 72.222 0.00 0.00 0.00 4.45
1146 1165 1.918800 CCTCCGGTTCCTCCTGGTT 60.919 63.158 0.00 0.00 33.68 3.67
1147 1166 1.597461 CTCCGGTTCCTCCTGGTTC 59.403 63.158 0.00 0.00 33.68 3.62
1148 1167 2.227089 CTCCGGTTCCTCCTGGTTCG 62.227 65.000 0.00 0.00 33.68 3.95
1149 1168 2.434359 CGGTTCCTCCTGGTTCGC 60.434 66.667 0.00 0.00 34.23 4.70
1152 1171 3.702048 TTCCTCCTGGTTCGCCGG 61.702 66.667 0.00 0.00 43.38 6.13
1238 1280 2.399356 GGCTCCAAGTACGGCAAGC 61.399 63.158 5.20 5.20 0.00 4.01
1240 1282 1.639298 GCTCCAAGTACGGCAAGCAG 61.639 60.000 8.02 0.00 0.00 4.24
1256 1298 0.254178 GCAGATCAGGAAGAAGGGCA 59.746 55.000 0.00 0.00 0.00 5.36
1261 1303 0.250234 TCAGGAAGAAGGGCATCGTG 59.750 55.000 0.00 0.00 32.92 4.35
1422 1464 1.153489 CCTACGAGGTCGACGAGGA 60.153 63.158 9.92 0.00 43.02 3.71
1423 1465 1.152989 CCTACGAGGTCGACGAGGAG 61.153 65.000 9.92 8.96 43.02 3.69
1424 1466 1.152989 CTACGAGGTCGACGAGGAGG 61.153 65.000 9.92 0.00 43.02 4.30
1582 1636 2.503382 GGACGATCCTCCTCCTGCC 61.503 68.421 3.67 0.00 32.53 4.85
1629 1688 7.492344 TGATATGATATTGATATGACACACCGC 59.508 37.037 0.00 0.00 0.00 5.68
1670 1730 1.100510 TCATAGTGGAAGACGACCCG 58.899 55.000 0.00 0.00 0.00 5.28
1675 1735 2.341101 TGGAAGACGACCCGAGAGC 61.341 63.158 0.00 0.00 0.00 4.09
1698 1758 5.391310 GCTTGATGTGTGTAAGTTGATCCTG 60.391 44.000 0.00 0.00 0.00 3.86
1824 1884 9.730705 TTGCTCTCTTGATATCTAAATTATGGG 57.269 33.333 3.98 0.00 0.00 4.00
1898 1958 2.617308 CCATAAGCTGGCTGACAAGATG 59.383 50.000 0.00 0.00 38.47 2.90
1955 2020 3.012518 ACCATCAGTTCTTGTATGCAGC 58.987 45.455 0.00 0.00 0.00 5.25
1973 2038 1.425428 CCAACTCGCTGCGAATTCC 59.575 57.895 25.86 0.00 34.74 3.01
2029 2128 2.636830 CTCCAGGTAAGTCCATGCAAG 58.363 52.381 0.00 0.00 39.02 4.01
2030 2129 1.985159 TCCAGGTAAGTCCATGCAAGT 59.015 47.619 0.00 0.00 39.02 3.16
2033 2132 2.939103 CAGGTAAGTCCATGCAAGTAGC 59.061 50.000 0.00 0.00 40.69 3.58
2046 2145 4.451629 GCAAGTAGCACCTCAGTTAGTA 57.548 45.455 0.00 0.00 44.79 1.82
2108 2210 8.422973 TCCAAGAATTTGTATATGCAAAATGC 57.577 30.769 20.62 13.32 41.03 3.56
2110 2212 7.280428 CCAAGAATTTGTATATGCAAAATGCCA 59.720 33.333 20.62 0.00 41.03 4.92
2111 2213 8.332464 CAAGAATTTGTATATGCAAAATGCCAG 58.668 33.333 20.62 7.91 44.23 4.85
2112 2214 7.558604 AGAATTTGTATATGCAAAATGCCAGT 58.441 30.769 20.62 2.33 44.23 4.00
2114 2216 9.311916 GAATTTGTATATGCAAAATGCCAGTTA 57.688 29.630 20.62 0.00 44.23 2.24
2115 2217 8.647143 ATTTGTATATGCAAAATGCCAGTTAC 57.353 30.769 20.62 0.00 44.23 2.50
2116 2218 7.403312 TTGTATATGCAAAATGCCAGTTACT 57.597 32.000 3.51 0.00 44.23 2.24
2117 2219 7.026631 TGTATATGCAAAATGCCAGTTACTC 57.973 36.000 0.00 0.00 44.23 2.59
2118 2220 3.874392 ATGCAAAATGCCAGTTACTCC 57.126 42.857 0.00 0.00 44.23 3.85
2119 2221 1.892474 TGCAAAATGCCAGTTACTCCC 59.108 47.619 0.00 0.00 44.23 4.30
2120 2222 2.171003 GCAAAATGCCAGTTACTCCCT 58.829 47.619 0.00 0.00 37.42 4.20
2121 2223 2.164422 GCAAAATGCCAGTTACTCCCTC 59.836 50.000 0.00 0.00 37.42 4.30
2122 2224 2.755103 CAAAATGCCAGTTACTCCCTCC 59.245 50.000 0.00 0.00 0.00 4.30
2123 2225 0.541863 AATGCCAGTTACTCCCTCCG 59.458 55.000 0.00 0.00 0.00 4.63
2124 2226 0.617820 ATGCCAGTTACTCCCTCCGT 60.618 55.000 0.00 0.00 0.00 4.69
2125 2227 1.255667 TGCCAGTTACTCCCTCCGTC 61.256 60.000 0.00 0.00 0.00 4.79
2126 2228 1.957765 GCCAGTTACTCCCTCCGTCC 61.958 65.000 0.00 0.00 0.00 4.79
2127 2229 1.328430 CCAGTTACTCCCTCCGTCCC 61.328 65.000 0.00 0.00 0.00 4.46
2128 2230 0.613853 CAGTTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
2129 2231 0.614134 AGTTACTCCCTCCGTCCCAC 60.614 60.000 0.00 0.00 0.00 4.61
2130 2232 0.901580 GTTACTCCCTCCGTCCCACA 60.902 60.000 0.00 0.00 0.00 4.17
2131 2233 0.178926 TTACTCCCTCCGTCCCACAA 60.179 55.000 0.00 0.00 0.00 3.33
2132 2234 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
2133 2235 1.221840 CTCCCTCCGTCCCACAATG 59.778 63.158 0.00 0.00 0.00 2.82
2134 2236 1.537889 TCCCTCCGTCCCACAATGT 60.538 57.895 0.00 0.00 0.00 2.71
2135 2237 0.252330 TCCCTCCGTCCCACAATGTA 60.252 55.000 0.00 0.00 0.00 2.29
2136 2238 0.616371 CCCTCCGTCCCACAATGTAA 59.384 55.000 0.00 0.00 0.00 2.41
2137 2239 1.406887 CCCTCCGTCCCACAATGTAAG 60.407 57.143 0.00 0.00 0.00 2.34
2138 2240 1.553248 CCTCCGTCCCACAATGTAAGA 59.447 52.381 0.00 0.00 0.00 2.10
2139 2241 2.618053 CTCCGTCCCACAATGTAAGAC 58.382 52.381 5.24 5.24 0.00 3.01
2141 2243 1.337447 CCGTCCCACAATGTAAGACGT 60.337 52.381 25.28 0.00 46.62 4.34
2142 2244 2.409975 CGTCCCACAATGTAAGACGTT 58.590 47.619 21.67 0.00 43.89 3.99
2143 2245 2.803956 CGTCCCACAATGTAAGACGTTT 59.196 45.455 21.67 0.00 43.89 3.60
2144 2246 3.249080 CGTCCCACAATGTAAGACGTTTT 59.751 43.478 21.67 0.00 43.89 2.43
2145 2247 4.260866 CGTCCCACAATGTAAGACGTTTTT 60.261 41.667 21.67 0.00 43.89 1.94
2146 2248 4.973663 GTCCCACAATGTAAGACGTTTTTG 59.026 41.667 0.00 0.00 0.00 2.44
2147 2249 3.733727 CCCACAATGTAAGACGTTTTTGC 59.266 43.478 0.00 0.00 0.00 3.68
2148 2250 4.355437 CCACAATGTAAGACGTTTTTGCA 58.645 39.130 0.00 1.87 0.00 4.08
2149 2251 4.800993 CCACAATGTAAGACGTTTTTGCAA 59.199 37.500 0.00 0.00 0.00 4.08
2150 2252 5.051774 CCACAATGTAAGACGTTTTTGCAAG 60.052 40.000 0.00 2.28 0.00 4.01
2151 2253 5.514914 CACAATGTAAGACGTTTTTGCAAGT 59.485 36.000 0.00 0.00 0.00 3.16
2152 2254 6.034470 CACAATGTAAGACGTTTTTGCAAGTT 59.966 34.615 0.00 0.00 0.00 2.66
2153 2255 7.219154 CACAATGTAAGACGTTTTTGCAAGTTA 59.781 33.333 0.00 0.00 0.00 2.24
2154 2256 7.755822 ACAATGTAAGACGTTTTTGCAAGTTAA 59.244 29.630 0.00 0.00 0.00 2.01
2155 2257 8.587950 CAATGTAAGACGTTTTTGCAAGTTAAA 58.412 29.630 0.00 0.00 0.00 1.52
2156 2258 7.495339 TGTAAGACGTTTTTGCAAGTTAAAC 57.505 32.000 13.02 13.02 0.00 2.01
2157 2259 7.082602 TGTAAGACGTTTTTGCAAGTTAAACA 58.917 30.769 19.80 9.14 32.67 2.83
2158 2260 7.594015 TGTAAGACGTTTTTGCAAGTTAAACAA 59.406 29.630 19.80 0.53 32.67 2.83
2159 2261 6.626199 AGACGTTTTTGCAAGTTAAACAAG 57.374 33.333 19.80 10.49 32.67 3.16
2160 2262 5.061684 AGACGTTTTTGCAAGTTAAACAAGC 59.938 36.000 19.80 11.08 32.67 4.01
2161 2263 4.926832 ACGTTTTTGCAAGTTAAACAAGCT 59.073 33.333 19.80 0.00 32.67 3.74
2162 2264 5.407084 ACGTTTTTGCAAGTTAAACAAGCTT 59.593 32.000 19.80 0.00 32.67 3.74
2163 2265 5.727592 CGTTTTTGCAAGTTAAACAAGCTTG 59.272 36.000 24.84 24.84 41.61 4.01
2164 2266 6.400515 CGTTTTTGCAAGTTAAACAAGCTTGA 60.401 34.615 32.50 7.93 41.31 3.02
2165 2267 7.294473 GTTTTTGCAAGTTAAACAAGCTTGAA 58.706 30.769 32.50 13.98 41.31 2.69
2166 2268 7.426929 TTTTGCAAGTTAAACAAGCTTGAAA 57.573 28.000 32.50 19.05 41.31 2.69
2167 2269 7.426929 TTTGCAAGTTAAACAAGCTTGAAAA 57.573 28.000 32.50 18.71 42.29 2.29
2168 2270 7.426929 TTGCAAGTTAAACAAGCTTGAAAAA 57.573 28.000 32.50 18.38 41.31 1.94
2169 2271 6.826612 TGCAAGTTAAACAAGCTTGAAAAAC 58.173 32.000 32.50 26.57 41.31 2.43
2170 2272 5.951494 GCAAGTTAAACAAGCTTGAAAAACG 59.049 36.000 32.50 18.27 41.31 3.60
2171 2273 6.400621 GCAAGTTAAACAAGCTTGAAAAACGT 60.401 34.615 32.50 23.22 41.31 3.99
2172 2274 6.864560 AGTTAAACAAGCTTGAAAAACGTC 57.135 33.333 32.50 13.63 0.00 4.34
2173 2275 6.617879 AGTTAAACAAGCTTGAAAAACGTCT 58.382 32.000 32.50 15.39 0.00 4.18
2174 2276 7.088272 AGTTAAACAAGCTTGAAAAACGTCTT 58.912 30.769 32.50 10.23 0.00 3.01
2175 2277 8.238631 AGTTAAACAAGCTTGAAAAACGTCTTA 58.761 29.630 32.50 11.47 0.00 2.10
2176 2278 6.864560 AAACAAGCTTGAAAAACGTCTTAC 57.135 33.333 32.50 0.00 0.00 2.34
2177 2279 5.554822 ACAAGCTTGAAAAACGTCTTACA 57.445 34.783 32.50 0.00 0.00 2.41
2178 2280 6.131544 ACAAGCTTGAAAAACGTCTTACAT 57.868 33.333 32.50 1.12 0.00 2.29
2179 2281 6.560711 ACAAGCTTGAAAAACGTCTTACATT 58.439 32.000 32.50 0.70 0.00 2.71
2180 2282 7.699566 ACAAGCTTGAAAAACGTCTTACATTA 58.300 30.769 32.50 0.00 0.00 1.90
2181 2283 8.349983 ACAAGCTTGAAAAACGTCTTACATTAT 58.650 29.630 32.50 0.00 0.00 1.28
2182 2284 8.629986 CAAGCTTGAAAAACGTCTTACATTATG 58.370 33.333 22.31 0.00 0.00 1.90
2183 2285 7.305474 AGCTTGAAAAACGTCTTACATTATGG 58.695 34.615 0.00 0.00 0.00 2.74
2184 2286 6.526674 GCTTGAAAAACGTCTTACATTATGGG 59.473 38.462 0.00 0.00 0.00 4.00
2185 2287 7.574217 GCTTGAAAAACGTCTTACATTATGGGA 60.574 37.037 0.00 0.00 0.00 4.37
2186 2288 7.136289 TGAAAAACGTCTTACATTATGGGAC 57.864 36.000 0.00 1.75 0.00 4.46
2189 2291 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
2190 2292 4.252971 CGTCTTACATTATGGGACGGAT 57.747 45.455 20.50 0.00 43.69 4.18
2191 2293 3.987868 CGTCTTACATTATGGGACGGATG 59.012 47.826 20.50 5.70 43.69 3.51
2192 2294 4.315803 GTCTTACATTATGGGACGGATGG 58.684 47.826 0.00 0.00 0.00 3.51
2193 2295 4.039973 GTCTTACATTATGGGACGGATGGA 59.960 45.833 0.00 0.00 0.00 3.41
2194 2296 4.283467 TCTTACATTATGGGACGGATGGAG 59.717 45.833 0.00 0.00 0.00 3.86
2310 2412 8.557450 AGTACAAATGTCAGTTTCCCCTATTAT 58.443 33.333 0.00 0.00 0.00 1.28
2408 2513 8.879342 TGTGAAAAACGGTGAATATGATTTTT 57.121 26.923 0.00 0.00 33.25 1.94
2499 2604 7.841956 AGTGTCTGAATAGTATTAGTGCTTGT 58.158 34.615 0.00 0.00 0.00 3.16
2532 2637 2.203070 GGTACCTCATGCCCTGCG 60.203 66.667 4.06 0.00 0.00 5.18
2544 2649 3.833645 CCTGCGCCTGCTACGGTA 61.834 66.667 4.18 0.00 43.34 4.02
2568 2673 4.346127 ACGAGGGTTAGTCCTTTGTAAACT 59.654 41.667 0.00 0.00 38.02 2.66
2596 2701 1.859302 ACCTCCAACCTGCAAAACAA 58.141 45.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.121759 CACAAGGAAAATCTTGATGGAGTACAT 59.878 37.037 10.99 0.00 44.98 2.29
5 6 6.430925 CACAAGGAAAATCTTGATGGAGTACA 59.569 38.462 10.99 0.00 44.98 2.90
6 7 6.431234 ACACAAGGAAAATCTTGATGGAGTAC 59.569 38.462 10.99 0.00 44.98 2.73
7 8 6.542821 ACACAAGGAAAATCTTGATGGAGTA 58.457 36.000 10.99 0.00 44.98 2.59
8 9 5.388654 ACACAAGGAAAATCTTGATGGAGT 58.611 37.500 10.99 0.62 44.98 3.85
9 10 5.972107 ACACAAGGAAAATCTTGATGGAG 57.028 39.130 10.99 0.13 44.98 3.86
10 11 7.039784 CCTTAACACAAGGAAAATCTTGATGGA 60.040 37.037 10.99 0.00 44.98 3.41
11 12 7.092716 CCTTAACACAAGGAAAATCTTGATGG 58.907 38.462 10.99 3.77 44.98 3.51
12 13 7.092716 CCCTTAACACAAGGAAAATCTTGATG 58.907 38.462 10.99 8.07 44.98 3.07
13 14 6.782494 ACCCTTAACACAAGGAAAATCTTGAT 59.218 34.615 10.99 1.17 44.98 2.57
14 15 6.133356 ACCCTTAACACAAGGAAAATCTTGA 58.867 36.000 10.99 0.00 44.98 3.02
15 16 6.405278 ACCCTTAACACAAGGAAAATCTTG 57.595 37.500 4.59 3.39 46.86 3.02
16 17 8.721133 AATACCCTTAACACAAGGAAAATCTT 57.279 30.769 4.59 0.00 39.81 2.40
17 18 7.947890 TGAATACCCTTAACACAAGGAAAATCT 59.052 33.333 4.59 0.00 39.81 2.40
18 19 8.117813 TGAATACCCTTAACACAAGGAAAATC 57.882 34.615 4.59 0.00 39.81 2.17
19 20 7.178451 CCTGAATACCCTTAACACAAGGAAAAT 59.822 37.037 4.59 0.00 39.81 1.82
20 21 6.492087 CCTGAATACCCTTAACACAAGGAAAA 59.508 38.462 4.59 0.00 39.81 2.29
21 22 6.007703 CCTGAATACCCTTAACACAAGGAAA 58.992 40.000 4.59 0.00 39.81 3.13
22 23 5.311121 TCCTGAATACCCTTAACACAAGGAA 59.689 40.000 4.59 0.00 39.81 3.36
23 24 4.847512 TCCTGAATACCCTTAACACAAGGA 59.152 41.667 4.59 0.00 39.81 3.36
24 25 5.174037 TCCTGAATACCCTTAACACAAGG 57.826 43.478 0.00 0.00 37.17 3.61
25 26 6.001460 TGTTCCTGAATACCCTTAACACAAG 58.999 40.000 0.00 0.00 0.00 3.16
26 27 5.942961 TGTTCCTGAATACCCTTAACACAA 58.057 37.500 0.00 0.00 0.00 3.33
27 28 5.308497 TCTGTTCCTGAATACCCTTAACACA 59.692 40.000 0.00 0.00 0.00 3.72
28 29 5.801380 TCTGTTCCTGAATACCCTTAACAC 58.199 41.667 0.00 0.00 0.00 3.32
29 30 5.045869 CCTCTGTTCCTGAATACCCTTAACA 60.046 44.000 0.00 0.00 0.00 2.41
30 31 5.429130 CCTCTGTTCCTGAATACCCTTAAC 58.571 45.833 0.00 0.00 0.00 2.01
31 32 4.473559 CCCTCTGTTCCTGAATACCCTTAA 59.526 45.833 0.00 0.00 0.00 1.85
32 33 4.037927 CCCTCTGTTCCTGAATACCCTTA 58.962 47.826 0.00 0.00 0.00 2.69
33 34 2.846827 CCCTCTGTTCCTGAATACCCTT 59.153 50.000 0.00 0.00 0.00 3.95
34 35 2.225908 ACCCTCTGTTCCTGAATACCCT 60.226 50.000 0.00 0.00 0.00 4.34
35 36 2.092914 CACCCTCTGTTCCTGAATACCC 60.093 54.545 0.00 0.00 0.00 3.69
36 37 2.572104 ACACCCTCTGTTCCTGAATACC 59.428 50.000 0.00 0.00 0.00 2.73
37 38 3.983044 ACACCCTCTGTTCCTGAATAC 57.017 47.619 0.00 0.00 0.00 1.89
38 39 3.773119 GGTACACCCTCTGTTCCTGAATA 59.227 47.826 0.00 0.00 37.35 1.75
39 40 2.572104 GGTACACCCTCTGTTCCTGAAT 59.428 50.000 0.00 0.00 37.35 2.57
40 41 1.975680 GGTACACCCTCTGTTCCTGAA 59.024 52.381 0.00 0.00 37.35 3.02
41 42 1.132977 TGGTACACCCTCTGTTCCTGA 60.133 52.381 0.00 0.00 40.29 3.86
42 43 1.348064 TGGTACACCCTCTGTTCCTG 58.652 55.000 0.00 0.00 40.29 3.86
43 44 2.112279 TTGGTACACCCTCTGTTCCT 57.888 50.000 0.00 0.00 40.29 3.36
44 45 3.434940 AATTGGTACACCCTCTGTTCC 57.565 47.619 0.00 0.00 39.29 3.62
45 46 5.751990 CGTATAATTGGTACACCCTCTGTTC 59.248 44.000 0.00 0.00 39.29 3.18
46 47 5.667466 CGTATAATTGGTACACCCTCTGTT 58.333 41.667 0.00 0.00 39.29 3.16
47 48 4.442472 GCGTATAATTGGTACACCCTCTGT 60.442 45.833 0.00 0.00 39.29 3.41
48 49 4.056050 GCGTATAATTGGTACACCCTCTG 58.944 47.826 0.00 0.00 39.29 3.35
49 50 3.707611 TGCGTATAATTGGTACACCCTCT 59.292 43.478 0.00 0.00 39.29 3.69
50 51 4.062677 TGCGTATAATTGGTACACCCTC 57.937 45.455 0.00 0.00 39.29 4.30
51 52 4.504340 GGATGCGTATAATTGGTACACCCT 60.504 45.833 0.00 0.00 39.29 4.34
52 53 3.749609 GGATGCGTATAATTGGTACACCC 59.250 47.826 0.00 0.00 39.29 4.61
53 54 4.638304 AGGATGCGTATAATTGGTACACC 58.362 43.478 0.00 0.00 39.29 4.16
54 55 5.176958 GTGAGGATGCGTATAATTGGTACAC 59.823 44.000 0.00 0.00 39.29 2.90
55 56 5.163395 TGTGAGGATGCGTATAATTGGTACA 60.163 40.000 0.00 0.00 0.00 2.90
56 57 5.294356 TGTGAGGATGCGTATAATTGGTAC 58.706 41.667 0.00 0.00 0.00 3.34
57 58 5.538849 TGTGAGGATGCGTATAATTGGTA 57.461 39.130 0.00 0.00 0.00 3.25
58 59 4.415881 TGTGAGGATGCGTATAATTGGT 57.584 40.909 0.00 0.00 0.00 3.67
59 60 5.749596 TTTGTGAGGATGCGTATAATTGG 57.250 39.130 0.00 0.00 0.00 3.16
60 61 7.015226 TCTTTTGTGAGGATGCGTATAATTG 57.985 36.000 0.00 0.00 0.00 2.32
61 62 7.624360 TTCTTTTGTGAGGATGCGTATAATT 57.376 32.000 0.00 0.00 0.00 1.40
62 63 7.624360 TTTCTTTTGTGAGGATGCGTATAAT 57.376 32.000 0.00 0.00 0.00 1.28
63 64 7.441890 TTTTCTTTTGTGAGGATGCGTATAA 57.558 32.000 0.00 0.00 0.00 0.98
64 65 7.174253 ACTTTTTCTTTTGTGAGGATGCGTATA 59.826 33.333 0.00 0.00 0.00 1.47
65 66 5.957842 TTTTCTTTTGTGAGGATGCGTAT 57.042 34.783 0.00 0.00 0.00 3.06
66 67 5.298276 ACTTTTTCTTTTGTGAGGATGCGTA 59.702 36.000 0.00 0.00 0.00 4.42
67 68 4.097892 ACTTTTTCTTTTGTGAGGATGCGT 59.902 37.500 0.00 0.00 0.00 5.24
68 69 4.442073 CACTTTTTCTTTTGTGAGGATGCG 59.558 41.667 0.00 0.00 32.72 4.73
69 70 5.351458 ACACTTTTTCTTTTGTGAGGATGC 58.649 37.500 0.00 0.00 34.81 3.91
70 71 8.190784 AGTTACACTTTTTCTTTTGTGAGGATG 58.809 33.333 0.00 0.00 34.81 3.51
71 72 8.293699 AGTTACACTTTTTCTTTTGTGAGGAT 57.706 30.769 0.00 0.00 34.81 3.24
72 73 7.696992 AGTTACACTTTTTCTTTTGTGAGGA 57.303 32.000 0.00 0.00 34.81 3.71
73 74 8.757164 AAAGTTACACTTTTTCTTTTGTGAGG 57.243 30.769 0.00 0.00 45.38 3.86
88 89 9.593134 GTCAGATCAGATGATAAAAGTTACACT 57.407 33.333 0.00 0.00 34.37 3.55
89 90 8.821894 GGTCAGATCAGATGATAAAAGTTACAC 58.178 37.037 0.00 0.00 34.37 2.90
90 91 8.539544 TGGTCAGATCAGATGATAAAAGTTACA 58.460 33.333 0.00 0.00 34.37 2.41
91 92 8.948631 TGGTCAGATCAGATGATAAAAGTTAC 57.051 34.615 0.00 0.00 34.37 2.50
93 94 9.553064 GTATGGTCAGATCAGATGATAAAAGTT 57.447 33.333 0.00 0.00 34.37 2.66
94 95 8.932610 AGTATGGTCAGATCAGATGATAAAAGT 58.067 33.333 0.00 0.00 34.37 2.66
95 96 9.775854 AAGTATGGTCAGATCAGATGATAAAAG 57.224 33.333 0.00 0.00 34.37 2.27
96 97 9.551734 CAAGTATGGTCAGATCAGATGATAAAA 57.448 33.333 0.00 0.00 34.37 1.52
97 98 8.708378 ACAAGTATGGTCAGATCAGATGATAAA 58.292 33.333 0.00 0.00 34.37 1.40
98 99 8.146412 CACAAGTATGGTCAGATCAGATGATAA 58.854 37.037 0.00 0.00 34.37 1.75
99 100 7.256083 CCACAAGTATGGTCAGATCAGATGATA 60.256 40.741 0.00 0.00 33.12 2.15
100 101 6.464039 CCACAAGTATGGTCAGATCAGATGAT 60.464 42.308 0.00 0.00 34.58 2.45
101 102 5.163374 CCACAAGTATGGTCAGATCAGATGA 60.163 44.000 0.00 0.00 34.77 2.92
102 103 5.055144 CCACAAGTATGGTCAGATCAGATG 58.945 45.833 0.00 0.00 34.77 2.90
103 104 4.964897 TCCACAAGTATGGTCAGATCAGAT 59.035 41.667 0.00 0.00 40.95 2.90
104 105 4.352893 TCCACAAGTATGGTCAGATCAGA 58.647 43.478 0.00 0.00 40.95 3.27
105 106 4.743057 TCCACAAGTATGGTCAGATCAG 57.257 45.455 0.00 0.00 40.95 2.90
106 107 5.426509 AGATTCCACAAGTATGGTCAGATCA 59.573 40.000 0.00 0.00 40.95 2.92
140 141 0.737219 AGTAGTACGTGGTGCGATCC 59.263 55.000 0.00 0.00 44.77 3.36
179 180 2.231478 TCACTCCTCGATCACAAAGGTC 59.769 50.000 0.00 0.00 0.00 3.85
229 230 2.410469 CTGCGCTGGGCTTTATGC 59.590 61.111 17.81 0.00 44.05 3.14
230 231 2.410469 GCTGCGCTGGGCTTTATG 59.590 61.111 17.81 4.49 44.05 1.90
231 232 3.204827 CGCTGCGCTGGGCTTTAT 61.205 61.111 17.84 0.00 44.05 1.40
232 233 4.697756 ACGCTGCGCTGGGCTTTA 62.698 61.111 27.22 0.00 44.05 1.85
266 267 2.308039 GGACAGACGTGGCACGAAC 61.308 63.158 42.65 32.32 46.05 3.95
272 273 2.262915 CAGAGGGACAGACGTGGC 59.737 66.667 0.00 0.00 0.00 5.01
273 274 2.262915 GCAGAGGGACAGACGTGG 59.737 66.667 0.00 0.00 0.00 4.94
274 275 2.126307 CGCAGAGGGACAGACGTG 60.126 66.667 0.00 0.00 0.00 4.49
275 276 2.597805 ACGCAGAGGGACAGACGT 60.598 61.111 0.00 0.00 0.00 4.34
276 277 1.938657 ATCACGCAGAGGGACAGACG 61.939 60.000 0.00 0.00 33.39 4.18
277 278 0.459237 CATCACGCAGAGGGACAGAC 60.459 60.000 0.00 0.00 33.39 3.51
278 279 0.611896 TCATCACGCAGAGGGACAGA 60.612 55.000 0.00 0.00 33.39 3.41
279 280 0.247460 TTCATCACGCAGAGGGACAG 59.753 55.000 0.00 0.00 33.39 3.51
280 281 0.037326 GTTCATCACGCAGAGGGACA 60.037 55.000 0.00 0.00 36.53 4.02
281 282 0.247736 AGTTCATCACGCAGAGGGAC 59.752 55.000 0.00 0.00 36.78 4.46
282 283 0.976641 AAGTTCATCACGCAGAGGGA 59.023 50.000 0.00 0.00 36.24 4.20
283 284 1.363744 GAAGTTCATCACGCAGAGGG 58.636 55.000 0.00 0.00 0.00 4.30
284 285 1.338105 TGGAAGTTCATCACGCAGAGG 60.338 52.381 5.01 0.00 0.00 3.69
285 286 1.998315 CTGGAAGTTCATCACGCAGAG 59.002 52.381 5.01 0.00 0.00 3.35
286 287 2.084610 CTGGAAGTTCATCACGCAGA 57.915 50.000 5.01 0.00 0.00 4.26
299 300 9.196552 CATACATACATACATACACACTGGAAG 57.803 37.037 0.00 0.00 42.29 3.46
300 301 8.700973 ACATACATACATACATACACACTGGAA 58.299 33.333 0.00 0.00 0.00 3.53
301 302 8.245195 ACATACATACATACATACACACTGGA 57.755 34.615 0.00 0.00 0.00 3.86
319 320 8.736244 TGCGAGTACATACATACATACATACAT 58.264 33.333 0.00 0.00 0.00 2.29
320 321 8.101654 TGCGAGTACATACATACATACATACA 57.898 34.615 0.00 0.00 0.00 2.29
321 322 8.959734 TTGCGAGTACATACATACATACATAC 57.040 34.615 0.00 0.00 0.00 2.39
328 329 9.401873 GTACATTATTGCGAGTACATACATACA 57.598 33.333 0.00 0.00 37.40 2.29
329 330 9.622004 AGTACATTATTGCGAGTACATACATAC 57.378 33.333 0.00 0.00 39.33 2.39
330 331 9.620660 CAGTACATTATTGCGAGTACATACATA 57.379 33.333 0.00 0.00 39.33 2.29
331 332 7.116376 GCAGTACATTATTGCGAGTACATACAT 59.884 37.037 0.00 0.00 39.33 2.29
332 333 6.419710 GCAGTACATTATTGCGAGTACATACA 59.580 38.462 0.00 0.00 39.33 2.29
333 334 6.641314 AGCAGTACATTATTGCGAGTACATAC 59.359 38.462 0.00 0.00 44.91 2.39
334 335 6.745116 AGCAGTACATTATTGCGAGTACATA 58.255 36.000 0.00 0.00 44.91 2.29
335 336 5.601662 AGCAGTACATTATTGCGAGTACAT 58.398 37.500 0.00 0.00 44.91 2.29
336 337 5.006153 AGCAGTACATTATTGCGAGTACA 57.994 39.130 0.00 0.00 44.91 2.90
337 338 5.115171 CGTAGCAGTACATTATTGCGAGTAC 59.885 44.000 0.00 0.00 44.91 2.73
338 339 5.209977 CGTAGCAGTACATTATTGCGAGTA 58.790 41.667 0.00 0.00 44.91 2.59
339 340 4.042398 CGTAGCAGTACATTATTGCGAGT 58.958 43.478 0.00 0.00 44.91 4.18
340 341 4.042398 ACGTAGCAGTACATTATTGCGAG 58.958 43.478 0.00 0.00 44.91 5.03
341 342 4.036567 ACGTAGCAGTACATTATTGCGA 57.963 40.909 0.00 0.00 44.91 5.10
342 343 4.974275 AGTACGTAGCAGTACATTATTGCG 59.026 41.667 15.94 0.00 46.85 4.85
343 344 5.332355 GCAGTACGTAGCAGTACATTATTGC 60.332 44.000 15.94 12.87 46.85 3.56
344 345 5.746721 TGCAGTACGTAGCAGTACATTATTG 59.253 40.000 15.94 8.51 46.85 1.90
345 346 5.898174 TGCAGTACGTAGCAGTACATTATT 58.102 37.500 15.94 0.00 46.85 1.40
346 347 5.509716 TGCAGTACGTAGCAGTACATTAT 57.490 39.130 15.94 0.00 46.85 1.28
347 348 4.968812 TGCAGTACGTAGCAGTACATTA 57.031 40.909 15.94 3.08 46.85 1.90
348 349 3.861276 TGCAGTACGTAGCAGTACATT 57.139 42.857 15.94 0.00 46.85 2.71
349 350 3.770666 CTTGCAGTACGTAGCAGTACAT 58.229 45.455 15.94 3.12 46.85 2.29
350 351 2.670229 GCTTGCAGTACGTAGCAGTACA 60.670 50.000 15.94 0.00 46.85 2.90
351 352 1.918609 GCTTGCAGTACGTAGCAGTAC 59.081 52.381 9.17 8.50 45.31 2.73
352 353 1.135199 GGCTTGCAGTACGTAGCAGTA 60.135 52.381 9.17 0.00 42.39 2.74
353 354 0.389948 GGCTTGCAGTACGTAGCAGT 60.390 55.000 9.17 0.00 42.39 4.40
354 355 0.389817 TGGCTTGCAGTACGTAGCAG 60.390 55.000 9.17 5.97 42.39 4.24
355 356 0.249120 ATGGCTTGCAGTACGTAGCA 59.751 50.000 5.47 5.47 39.32 3.49
356 357 1.369625 AATGGCTTGCAGTACGTAGC 58.630 50.000 0.00 0.00 0.00 3.58
357 358 2.742053 ACAAATGGCTTGCAGTACGTAG 59.258 45.455 0.00 0.00 38.75 3.51
358 359 2.773487 ACAAATGGCTTGCAGTACGTA 58.227 42.857 0.00 0.00 38.75 3.57
359 360 1.604604 ACAAATGGCTTGCAGTACGT 58.395 45.000 0.00 0.00 38.75 3.57
360 361 4.550063 CGTATACAAATGGCTTGCAGTACG 60.550 45.833 3.32 0.00 38.75 3.67
361 362 4.331717 ACGTATACAAATGGCTTGCAGTAC 59.668 41.667 3.32 0.00 38.75 2.73
362 363 4.509616 ACGTATACAAATGGCTTGCAGTA 58.490 39.130 3.32 0.00 38.75 2.74
363 364 3.343617 ACGTATACAAATGGCTTGCAGT 58.656 40.909 3.32 0.00 38.75 4.40
364 365 4.570772 AGTACGTATACAAATGGCTTGCAG 59.429 41.667 0.00 0.00 38.75 4.41
365 366 4.509616 AGTACGTATACAAATGGCTTGCA 58.490 39.130 0.00 0.00 38.75 4.08
366 367 5.479716 AAGTACGTATACAAATGGCTTGC 57.520 39.130 0.00 0.00 38.75 4.01
383 384 5.724239 TGACGCGTACTACGTAATAAGTAC 58.276 41.667 13.97 13.90 45.24 2.73
384 385 5.556382 GCTGACGCGTACTACGTAATAAGTA 60.556 44.000 13.97 0.00 45.24 2.24
385 386 4.783450 GCTGACGCGTACTACGTAATAAGT 60.783 45.833 13.97 0.00 45.24 2.24
386 387 3.656719 GCTGACGCGTACTACGTAATAAG 59.343 47.826 13.97 0.00 45.24 1.73
387 388 3.546020 GGCTGACGCGTACTACGTAATAA 60.546 47.826 13.97 0.00 45.24 1.40
388 389 2.032894 GGCTGACGCGTACTACGTAATA 60.033 50.000 13.97 0.00 45.24 0.98
389 390 1.268234 GGCTGACGCGTACTACGTAAT 60.268 52.381 13.97 0.00 45.24 1.89
390 391 0.096976 GGCTGACGCGTACTACGTAA 59.903 55.000 13.97 3.41 45.24 3.18
391 392 1.715585 GGCTGACGCGTACTACGTA 59.284 57.895 13.97 0.00 45.24 3.57
393 394 2.646862 CGGCTGACGCGTACTACG 60.647 66.667 13.97 11.82 45.88 3.51
418 419 2.199236 CGACTCAAATAAGGGTACGCC 58.801 52.381 6.27 0.00 0.00 5.68
419 420 1.591619 GCGACTCAAATAAGGGTACGC 59.408 52.381 0.77 0.77 37.11 4.42
420 421 2.858344 CAGCGACTCAAATAAGGGTACG 59.142 50.000 0.00 0.00 0.00 3.67
421 422 3.858247 ACAGCGACTCAAATAAGGGTAC 58.142 45.455 0.00 0.00 0.00 3.34
422 423 4.250464 CAACAGCGACTCAAATAAGGGTA 58.750 43.478 0.00 0.00 0.00 3.69
423 424 3.074412 CAACAGCGACTCAAATAAGGGT 58.926 45.455 0.00 0.00 0.00 4.34
424 425 2.159517 GCAACAGCGACTCAAATAAGGG 60.160 50.000 0.00 0.00 0.00 3.95
425 426 2.744202 AGCAACAGCGACTCAAATAAGG 59.256 45.455 0.00 0.00 0.00 2.69
426 427 3.740590 CAGCAACAGCGACTCAAATAAG 58.259 45.455 0.00 0.00 0.00 1.73
427 428 2.095768 GCAGCAACAGCGACTCAAATAA 60.096 45.455 0.00 0.00 0.00 1.40
428 429 1.464608 GCAGCAACAGCGACTCAAATA 59.535 47.619 0.00 0.00 0.00 1.40
429 430 0.239347 GCAGCAACAGCGACTCAAAT 59.761 50.000 0.00 0.00 0.00 2.32
430 431 0.815213 AGCAGCAACAGCGACTCAAA 60.815 50.000 0.00 0.00 37.01 2.69
431 432 1.227645 AGCAGCAACAGCGACTCAA 60.228 52.632 0.00 0.00 37.01 3.02
432 433 1.957695 CAGCAGCAACAGCGACTCA 60.958 57.895 0.00 0.00 37.01 3.41
433 434 1.665916 TCAGCAGCAACAGCGACTC 60.666 57.895 0.00 0.00 37.01 3.36
434 435 1.958205 GTCAGCAGCAACAGCGACT 60.958 57.895 0.00 0.00 34.81 4.18
435 436 1.775039 TTGTCAGCAGCAACAGCGAC 61.775 55.000 0.00 0.00 36.65 5.19
436 437 1.501337 CTTGTCAGCAGCAACAGCGA 61.501 55.000 0.00 0.00 37.01 4.93
437 438 1.082300 CTTGTCAGCAGCAACAGCG 60.082 57.895 0.00 0.00 37.01 5.18
438 439 1.371389 GCTTGTCAGCAGCAACAGC 60.371 57.895 0.00 1.49 46.49 4.40
439 440 4.937781 GCTTGTCAGCAGCAACAG 57.062 55.556 0.00 0.00 46.49 3.16
448 449 4.319046 GCACGGTATTATGATGCTTGTCAG 60.319 45.833 0.00 0.00 33.44 3.51
449 450 3.559655 GCACGGTATTATGATGCTTGTCA 59.440 43.478 0.00 0.00 33.44 3.58
450 451 3.058914 GGCACGGTATTATGATGCTTGTC 60.059 47.826 0.00 0.00 36.52 3.18
451 452 2.878406 GGCACGGTATTATGATGCTTGT 59.122 45.455 0.00 0.00 36.52 3.16
452 453 3.542712 GGCACGGTATTATGATGCTTG 57.457 47.619 0.00 0.00 36.52 4.01
658 659 4.884257 GCGCCAACTATCGCCGGA 62.884 66.667 5.05 0.00 45.01 5.14
691 697 1.584380 GGGTGCTTTGCTCTGCTCTG 61.584 60.000 0.00 0.00 0.00 3.35
692 698 1.303155 GGGTGCTTTGCTCTGCTCT 60.303 57.895 0.00 0.00 0.00 4.09
693 699 0.964358 ATGGGTGCTTTGCTCTGCTC 60.964 55.000 0.00 0.00 0.00 4.26
729 735 2.299297 AGTCCTCGCTAATTAATCGGGG 59.701 50.000 15.83 15.83 44.75 5.73
744 750 3.673809 CGTGCGCCTAATATAAAGTCCTC 59.326 47.826 4.18 0.00 0.00 3.71
821 827 2.437359 CGACGGACGGGGAGTACT 60.437 66.667 0.00 0.00 38.46 2.73
885 891 4.671590 TCGTGGAGCGAGTGGGGA 62.672 66.667 0.00 0.00 45.68 4.81
938 953 4.065281 CGGAGTCGGGGAGCGTTT 62.065 66.667 0.00 0.00 0.00 3.60
981 996 1.980951 TATGGACGAACGACGGTCGG 61.981 60.000 35.43 19.48 45.59 4.79
983 998 4.400283 ACCATATGGACGAACGACGGTC 62.400 54.545 28.77 1.83 41.80 4.79
984 999 2.560704 ACCATATGGACGAACGACGGT 61.561 52.381 28.77 0.00 41.80 4.83
985 1000 0.101759 ACCATATGGACGAACGACGG 59.898 55.000 28.77 0.00 41.80 4.79
986 1001 1.197055 CACCATATGGACGAACGACG 58.803 55.000 28.77 0.00 42.60 5.12
987 1002 2.460918 CTCACCATATGGACGAACGAC 58.539 52.381 28.77 0.00 38.94 4.34
988 1003 1.407618 CCTCACCATATGGACGAACGA 59.592 52.381 28.77 12.30 38.94 3.85
989 1004 1.136305 ACCTCACCATATGGACGAACG 59.864 52.381 28.77 16.56 38.94 3.95
990 1005 2.483188 GGACCTCACCATATGGACGAAC 60.483 54.545 28.77 15.35 38.94 3.95
991 1006 1.760613 GGACCTCACCATATGGACGAA 59.239 52.381 28.77 9.03 38.94 3.85
992 1007 1.342574 TGGACCTCACCATATGGACGA 60.343 52.381 28.77 20.73 38.94 4.20
993 1008 1.119684 TGGACCTCACCATATGGACG 58.880 55.000 28.77 17.76 38.94 4.79
994 1009 2.505819 AGTTGGACCTCACCATATGGAC 59.494 50.000 28.77 12.10 39.82 4.02
995 1010 2.771943 GAGTTGGACCTCACCATATGGA 59.228 50.000 28.77 5.82 39.82 3.41
996 1011 2.158755 GGAGTTGGACCTCACCATATGG 60.159 54.545 20.68 20.68 39.82 2.74
997 1012 2.505407 TGGAGTTGGACCTCACCATATG 59.495 50.000 0.00 0.00 39.82 1.78
998 1013 2.845659 TGGAGTTGGACCTCACCATAT 58.154 47.619 0.00 0.00 39.82 1.78
999 1014 2.335681 TGGAGTTGGACCTCACCATA 57.664 50.000 0.00 0.00 39.82 2.74
1081 1096 0.736325 AATGGAAGCGTCGACGGAAG 60.736 55.000 36.13 11.87 40.23 3.46
1086 1101 1.000145 GGAGAAATGGAAGCGTCGAC 59.000 55.000 5.18 5.18 0.00 4.20
1089 1104 1.706287 GGCGGAGAAATGGAAGCGTC 61.706 60.000 0.00 0.00 0.00 5.19
1094 1109 2.437716 GCCGGCGGAGAAATGGAA 60.438 61.111 33.44 0.00 0.00 3.53
1116 1135 4.637771 CGGAGGGGTCAATGAACC 57.362 61.111 9.25 9.25 39.01 3.62
1129 1148 1.597461 GAACCAGGAGGAACCGGAG 59.403 63.158 9.46 0.00 44.74 4.63
1130 1149 2.280552 CGAACCAGGAGGAACCGGA 61.281 63.158 9.46 0.00 44.74 5.14
1131 1150 2.264794 CGAACCAGGAGGAACCGG 59.735 66.667 0.00 0.00 44.74 5.28
1132 1151 2.434359 GCGAACCAGGAGGAACCG 60.434 66.667 0.00 0.00 44.74 4.44
1133 1152 2.046217 GGCGAACCAGGAGGAACC 60.046 66.667 0.00 0.00 38.69 3.62
1134 1153 2.434359 CGGCGAACCAGGAGGAAC 60.434 66.667 0.00 0.00 38.69 3.62
1214 1256 0.108329 CCGTACTTGGAGCCGATGTT 60.108 55.000 0.00 0.00 0.00 2.71
1215 1257 1.515954 CCGTACTTGGAGCCGATGT 59.484 57.895 0.00 0.00 0.00 3.06
1238 1280 2.806019 CGATGCCCTTCTTCCTGATCTG 60.806 54.545 0.00 0.00 0.00 2.90
1240 1282 1.139853 ACGATGCCCTTCTTCCTGATC 59.860 52.381 0.00 0.00 0.00 2.92
1465 1510 3.771491 AGGTCGTCGTCGTCGTCG 61.771 66.667 14.18 14.18 46.06 5.12
1466 1511 2.202146 CAGGTCGTCGTCGTCGTC 60.202 66.667 11.41 6.21 38.33 4.20
1467 1512 4.380628 GCAGGTCGTCGTCGTCGT 62.381 66.667 11.41 0.00 38.33 4.34
1501 1546 4.794439 CTGGACGCGCCGACATCA 62.794 66.667 5.73 0.00 40.66 3.07
1582 1636 7.822161 ATCATATCATAGAGAGAAGGGATCG 57.178 40.000 0.00 0.00 0.00 3.69
1611 1670 3.130633 GCAGCGGTGTGTCATATCAATA 58.869 45.455 17.07 0.00 0.00 1.90
1612 1671 1.942657 GCAGCGGTGTGTCATATCAAT 59.057 47.619 17.07 0.00 0.00 2.57
1613 1672 1.066215 AGCAGCGGTGTGTCATATCAA 60.066 47.619 17.07 0.00 0.00 2.57
1614 1673 0.536724 AGCAGCGGTGTGTCATATCA 59.463 50.000 17.07 0.00 0.00 2.15
1615 1674 0.933097 CAGCAGCGGTGTGTCATATC 59.067 55.000 17.07 0.00 0.00 1.63
1616 1675 0.536724 TCAGCAGCGGTGTGTCATAT 59.463 50.000 17.07 0.00 32.43 1.78
1617 1676 0.320050 TTCAGCAGCGGTGTGTCATA 59.680 50.000 17.07 0.00 32.43 2.15
1618 1677 0.321919 ATTCAGCAGCGGTGTGTCAT 60.322 50.000 17.07 7.41 32.43 3.06
1619 1678 0.534877 AATTCAGCAGCGGTGTGTCA 60.535 50.000 17.07 5.61 32.43 3.58
1620 1679 0.593128 AAATTCAGCAGCGGTGTGTC 59.407 50.000 17.07 0.00 32.43 3.67
1621 1680 1.032014 AAAATTCAGCAGCGGTGTGT 58.968 45.000 17.07 0.70 32.43 3.72
1629 1688 5.811613 TGAACAAAGGAACAAAATTCAGCAG 59.188 36.000 0.00 0.00 0.00 4.24
1670 1730 4.991056 TCAACTTACACACATCAAGCTCTC 59.009 41.667 0.00 0.00 0.00 3.20
1675 1735 5.391310 GCAGGATCAACTTACACACATCAAG 60.391 44.000 0.00 0.00 0.00 3.02
1698 1758 7.415206 CCATTACCAGGACACAAAAACTATAGC 60.415 40.741 0.00 0.00 0.00 2.97
1898 1958 5.258456 ACAATGCTCCATCACATGAATTC 57.742 39.130 0.00 0.00 0.00 2.17
1955 2020 1.425428 GGAATTCGCAGCGAGTTGG 59.575 57.895 28.02 0.00 36.06 3.77
1966 2031 1.737236 TGTGCTCCAATTCGGAATTCG 59.263 47.619 12.86 7.33 45.75 3.34
1973 2038 4.082787 ACCTTAATGTTGTGCTCCAATTCG 60.083 41.667 0.00 0.00 35.02 3.34
2029 2128 5.047519 TCCAACTTACTAACTGAGGTGCTAC 60.048 44.000 0.00 0.00 0.00 3.58
2030 2129 5.081728 TCCAACTTACTAACTGAGGTGCTA 58.918 41.667 0.00 0.00 0.00 3.49
2033 2132 7.383687 TGTAATCCAACTTACTAACTGAGGTG 58.616 38.462 0.00 0.00 33.62 4.00
2037 2136 7.822334 CACCATGTAATCCAACTTACTAACTGA 59.178 37.037 0.00 0.00 33.62 3.41
2044 2143 7.174253 TGTTTCTCACCATGTAATCCAACTTAC 59.826 37.037 0.00 0.00 33.17 2.34
2046 2145 6.016276 GTGTTTCTCACCATGTAATCCAACTT 60.016 38.462 0.00 0.00 40.84 2.66
2106 2208 1.229082 ACGGAGGGAGTAACTGGCA 60.229 57.895 0.00 0.00 0.00 4.92
2107 2209 1.516423 GACGGAGGGAGTAACTGGC 59.484 63.158 0.00 0.00 0.00 4.85
2108 2210 1.328430 GGGACGGAGGGAGTAACTGG 61.328 65.000 0.00 0.00 0.00 4.00
2110 2212 0.614134 GTGGGACGGAGGGAGTAACT 60.614 60.000 0.00 0.00 0.00 2.24
2111 2213 0.901580 TGTGGGACGGAGGGAGTAAC 60.902 60.000 0.00 0.00 0.00 2.50
2112 2214 0.178926 TTGTGGGACGGAGGGAGTAA 60.179 55.000 0.00 0.00 0.00 2.24
2114 2216 1.229529 ATTGTGGGACGGAGGGAGT 60.230 57.895 0.00 0.00 0.00 3.85
2115 2217 1.221840 CATTGTGGGACGGAGGGAG 59.778 63.158 0.00 0.00 0.00 4.30
2116 2218 0.252330 TACATTGTGGGACGGAGGGA 60.252 55.000 0.00 0.00 0.00 4.20
2117 2219 0.616371 TTACATTGTGGGACGGAGGG 59.384 55.000 0.00 0.00 0.00 4.30
2118 2220 1.553248 TCTTACATTGTGGGACGGAGG 59.447 52.381 0.00 0.00 0.00 4.30
2119 2221 2.618053 GTCTTACATTGTGGGACGGAG 58.382 52.381 0.00 0.00 0.00 4.63
2120 2222 1.067425 CGTCTTACATTGTGGGACGGA 60.067 52.381 24.96 5.37 43.69 4.69
2121 2223 1.355971 CGTCTTACATTGTGGGACGG 58.644 55.000 24.96 14.26 43.69 4.79
2123 2225 4.823790 AAAACGTCTTACATTGTGGGAC 57.176 40.909 0.00 6.72 0.00 4.46
2124 2226 4.498345 GCAAAAACGTCTTACATTGTGGGA 60.498 41.667 0.00 0.00 0.00 4.37
2125 2227 3.733727 GCAAAAACGTCTTACATTGTGGG 59.266 43.478 0.00 0.00 0.00 4.61
2126 2228 4.355437 TGCAAAAACGTCTTACATTGTGG 58.645 39.130 0.00 0.00 0.00 4.17
2127 2229 5.514914 ACTTGCAAAAACGTCTTACATTGTG 59.485 36.000 0.00 0.00 0.00 3.33
2128 2230 5.646606 ACTTGCAAAAACGTCTTACATTGT 58.353 33.333 0.00 0.00 0.00 2.71
2129 2231 6.567769 AACTTGCAAAAACGTCTTACATTG 57.432 33.333 0.00 0.00 0.00 2.82
2130 2232 8.588789 GTTTAACTTGCAAAAACGTCTTACATT 58.411 29.630 8.93 0.00 0.00 2.71
2131 2233 7.755822 TGTTTAACTTGCAAAAACGTCTTACAT 59.244 29.630 16.44 0.00 36.19 2.29
2132 2234 7.082602 TGTTTAACTTGCAAAAACGTCTTACA 58.917 30.769 16.44 6.95 36.19 2.41
2133 2235 7.495339 TGTTTAACTTGCAAAAACGTCTTAC 57.505 32.000 16.44 5.05 36.19 2.34
2134 2236 7.201367 GCTTGTTTAACTTGCAAAAACGTCTTA 60.201 33.333 16.44 1.18 36.19 2.10
2135 2237 6.400621 GCTTGTTTAACTTGCAAAAACGTCTT 60.401 34.615 16.44 0.00 36.19 3.01
2136 2238 5.061684 GCTTGTTTAACTTGCAAAAACGTCT 59.938 36.000 16.44 0.80 36.19 4.18
2137 2239 5.061684 AGCTTGTTTAACTTGCAAAAACGTC 59.938 36.000 16.44 10.06 36.19 4.34
2138 2240 4.926832 AGCTTGTTTAACTTGCAAAAACGT 59.073 33.333 16.44 2.56 36.19 3.99
2139 2241 5.448926 AGCTTGTTTAACTTGCAAAAACG 57.551 34.783 16.44 7.75 36.19 3.60
2140 2242 6.826612 TCAAGCTTGTTTAACTTGCAAAAAC 58.173 32.000 25.19 15.26 40.45 2.43
2141 2243 7.426929 TTCAAGCTTGTTTAACTTGCAAAAA 57.573 28.000 25.19 4.96 40.45 1.94
2142 2244 7.426929 TTTCAAGCTTGTTTAACTTGCAAAA 57.573 28.000 25.19 11.17 40.45 2.44
2143 2245 7.426929 TTTTCAAGCTTGTTTAACTTGCAAA 57.573 28.000 25.19 11.65 40.45 3.68
2144 2246 7.294473 GTTTTTCAAGCTTGTTTAACTTGCAA 58.706 30.769 25.19 6.10 40.45 4.08
2145 2247 6.400515 CGTTTTTCAAGCTTGTTTAACTTGCA 60.401 34.615 25.19 0.00 40.45 4.08
2146 2248 5.951494 CGTTTTTCAAGCTTGTTTAACTTGC 59.049 36.000 25.19 7.85 40.45 4.01
2147 2249 7.044589 ACGTTTTTCAAGCTTGTTTAACTTG 57.955 32.000 25.19 15.78 41.70 3.16
2148 2250 7.088272 AGACGTTTTTCAAGCTTGTTTAACTT 58.912 30.769 25.19 18.51 0.00 2.66
2149 2251 6.617879 AGACGTTTTTCAAGCTTGTTTAACT 58.382 32.000 25.19 15.16 0.00 2.24
2150 2252 6.864560 AGACGTTTTTCAAGCTTGTTTAAC 57.135 33.333 25.19 22.15 0.00 2.01
2151 2253 8.021973 TGTAAGACGTTTTTCAAGCTTGTTTAA 58.978 29.630 25.19 15.02 0.00 1.52
2152 2254 7.528307 TGTAAGACGTTTTTCAAGCTTGTTTA 58.472 30.769 25.19 10.05 0.00 2.01
2153 2255 6.383415 TGTAAGACGTTTTTCAAGCTTGTTT 58.617 32.000 25.19 9.70 0.00 2.83
2154 2256 5.945155 TGTAAGACGTTTTTCAAGCTTGTT 58.055 33.333 25.19 11.65 0.00 2.83
2155 2257 5.554822 TGTAAGACGTTTTTCAAGCTTGT 57.445 34.783 25.19 4.69 0.00 3.16
2156 2258 8.629986 CATAATGTAAGACGTTTTTCAAGCTTG 58.370 33.333 20.81 20.81 0.00 4.01
2157 2259 7.807907 CCATAATGTAAGACGTTTTTCAAGCTT 59.192 33.333 2.36 0.00 0.00 3.74
2158 2260 7.305474 CCATAATGTAAGACGTTTTTCAAGCT 58.695 34.615 2.36 0.00 0.00 3.74
2159 2261 6.526674 CCCATAATGTAAGACGTTTTTCAAGC 59.473 38.462 2.36 0.00 0.00 4.01
2160 2262 7.749126 GTCCCATAATGTAAGACGTTTTTCAAG 59.251 37.037 2.36 0.00 0.00 3.02
2161 2263 7.571613 CGTCCCATAATGTAAGACGTTTTTCAA 60.572 37.037 2.36 0.00 43.89 2.69
2162 2264 6.128499 CGTCCCATAATGTAAGACGTTTTTCA 60.128 38.462 0.00 0.00 43.89 2.69
2163 2265 6.245724 CGTCCCATAATGTAAGACGTTTTTC 58.754 40.000 0.00 0.00 43.89 2.29
2164 2266 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
2165 2267 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
2166 2268 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
2167 2269 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
2168 2270 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
2170 2272 4.039973 TCCATCCGTCCCATAATGTAAGAC 59.960 45.833 0.00 0.00 0.00 3.01
2171 2273 4.228010 TCCATCCGTCCCATAATGTAAGA 58.772 43.478 0.00 0.00 0.00 2.10
2172 2274 4.040461 ACTCCATCCGTCCCATAATGTAAG 59.960 45.833 0.00 0.00 0.00 2.34
2173 2275 3.971305 ACTCCATCCGTCCCATAATGTAA 59.029 43.478 0.00 0.00 0.00 2.41
2174 2276 3.583228 ACTCCATCCGTCCCATAATGTA 58.417 45.455 0.00 0.00 0.00 2.29
2175 2277 2.408565 ACTCCATCCGTCCCATAATGT 58.591 47.619 0.00 0.00 0.00 2.71
2176 2278 4.826274 ATACTCCATCCGTCCCATAATG 57.174 45.455 0.00 0.00 0.00 1.90
2177 2279 5.843019 AAATACTCCATCCGTCCCATAAT 57.157 39.130 0.00 0.00 0.00 1.28
2178 2280 5.368523 AGAAAATACTCCATCCGTCCCATAA 59.631 40.000 0.00 0.00 0.00 1.90
2179 2281 4.905456 AGAAAATACTCCATCCGTCCCATA 59.095 41.667 0.00 0.00 0.00 2.74
2180 2282 3.716872 AGAAAATACTCCATCCGTCCCAT 59.283 43.478 0.00 0.00 0.00 4.00
2181 2283 3.112263 AGAAAATACTCCATCCGTCCCA 58.888 45.455 0.00 0.00 0.00 4.37
2182 2284 3.840124 AGAAAATACTCCATCCGTCCC 57.160 47.619 0.00 0.00 0.00 4.46
2183 2285 5.429130 AGAAAGAAAATACTCCATCCGTCC 58.571 41.667 0.00 0.00 0.00 4.79
2184 2286 7.307455 GCATAGAAAGAAAATACTCCATCCGTC 60.307 40.741 0.00 0.00 0.00 4.79
2185 2287 6.483640 GCATAGAAAGAAAATACTCCATCCGT 59.516 38.462 0.00 0.00 0.00 4.69
2186 2288 6.483307 TGCATAGAAAGAAAATACTCCATCCG 59.517 38.462 0.00 0.00 0.00 4.18
2187 2289 7.500559 ACTGCATAGAAAGAAAATACTCCATCC 59.499 37.037 0.00 0.00 0.00 3.51
2188 2290 8.341173 CACTGCATAGAAAGAAAATACTCCATC 58.659 37.037 0.00 0.00 0.00 3.51
2189 2291 8.049117 TCACTGCATAGAAAGAAAATACTCCAT 58.951 33.333 0.00 0.00 0.00 3.41
2190 2292 7.394016 TCACTGCATAGAAAGAAAATACTCCA 58.606 34.615 0.00 0.00 0.00 3.86
2191 2293 7.550906 ACTCACTGCATAGAAAGAAAATACTCC 59.449 37.037 0.00 0.00 0.00 3.85
2192 2294 8.485976 ACTCACTGCATAGAAAGAAAATACTC 57.514 34.615 0.00 0.00 0.00 2.59
2193 2295 9.944376 TTACTCACTGCATAGAAAGAAAATACT 57.056 29.630 0.00 0.00 0.00 2.12
2380 2482 8.687824 AATCATATTCACCGTTTTTCACATTC 57.312 30.769 0.00 0.00 0.00 2.67
2408 2513 9.502091 AAGCAGAAAATGATAGTGTAAACTACA 57.498 29.630 0.00 0.00 36.08 2.74
2428 2533 3.008375 ACTCAATAGCCACTTGAAGCAGA 59.992 43.478 0.00 0.00 32.53 4.26
2429 2534 3.341823 ACTCAATAGCCACTTGAAGCAG 58.658 45.455 0.00 0.00 32.53 4.24
2532 2637 1.226888 CCTCGTTACCGTAGCAGGC 60.227 63.158 0.00 0.00 35.01 4.85
2544 2649 4.961438 TTACAAAGGACTAACCCTCGTT 57.039 40.909 0.00 0.00 40.05 3.85
2568 2673 1.142870 CAGGTTGGAGGTTGGAGTCAA 59.857 52.381 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.