Multiple sequence alignment - TraesCS3A01G351400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G351400 chr3A 100.000 2651 0 0 1 2651 599895753 599898403 0.000000e+00 4896.0
1 TraesCS3A01G351400 chr3A 100.000 2450 0 0 2960 5409 599898712 599901161 0.000000e+00 4525.0
2 TraesCS3A01G351400 chr3B 90.716 1788 81 28 1 1756 603829331 603831065 0.000000e+00 2303.0
3 TraesCS3A01G351400 chr3B 94.295 596 19 9 3281 3867 603832180 603832769 0.000000e+00 898.0
4 TraesCS3A01G351400 chr3B 89.886 613 26 15 4135 4741 603833279 603833861 0.000000e+00 756.0
5 TraesCS3A01G351400 chr3B 85.820 677 39 29 4751 5403 603834027 603834670 0.000000e+00 665.0
6 TraesCS3A01G351400 chr3B 85.564 381 31 9 2270 2633 603831545 603831918 1.420000e-100 377.0
7 TraesCS3A01G351400 chr3B 89.151 212 17 5 1824 2030 603831213 603831423 5.370000e-65 259.0
8 TraesCS3A01G351400 chr3B 91.489 188 15 1 2960 3147 603831926 603832112 1.930000e-64 257.0
9 TraesCS3A01G351400 chr3B 83.654 208 17 7 3864 4056 603832956 603833161 4.300000e-41 180.0
10 TraesCS3A01G351400 chr3B 96.000 50 2 0 1775 1824 603831052 603831101 1.250000e-11 82.4
11 TraesCS3A01G351400 chr3D 89.552 1809 74 38 1 1756 457029990 457031736 0.000000e+00 2187.0
12 TraesCS3A01G351400 chr3D 93.375 1283 61 15 4135 5409 457033283 457034549 0.000000e+00 1877.0
13 TraesCS3A01G351400 chr3D 90.223 808 38 18 3299 4069 457032384 457033187 0.000000e+00 1016.0
14 TraesCS3A01G351400 chr3D 90.446 157 9 2 2960 3116 457032067 457032217 9.190000e-48 202.0
15 TraesCS3A01G351400 chr4B 82.821 553 51 26 994 1543 619224839 619224328 6.390000e-124 455.0
16 TraesCS3A01G351400 chr4B 88.936 235 26 0 4136 4370 619222909 619222675 1.910000e-74 291.0
17 TraesCS3A01G351400 chr4B 81.921 354 32 10 3295 3647 619223315 619222993 2.480000e-68 270.0
18 TraesCS3A01G351400 chr1B 80.403 347 62 4 3301 3644 85432669 85433012 5.370000e-65 259.0
19 TraesCS3A01G351400 chr1D 80.115 347 63 4 3301 3644 53231523 53231866 2.500000e-63 254.0
20 TraesCS3A01G351400 chr1A 80.115 347 63 4 3301 3644 53023014 53023357 2.500000e-63 254.0
21 TraesCS3A01G351400 chr4A 90.244 123 11 1 2054 2175 109426197 109426075 5.610000e-35 159.0
22 TraesCS3A01G351400 chr4A 90.833 120 10 1 2057 2175 514356378 514356259 5.610000e-35 159.0
23 TraesCS3A01G351400 chr2A 88.333 120 13 1 2057 2175 468334362 468334481 5.650000e-30 143.0
24 TraesCS3A01G351400 chr6D 88.793 116 12 1 2057 2171 5663800 5663915 2.030000e-29 141.0
25 TraesCS3A01G351400 chr6D 74.112 197 31 16 3446 3632 2107577 2107391 4.520000e-06 63.9
26 TraesCS3A01G351400 chr2D 78.756 193 30 7 3446 3634 590930810 590930625 9.520000e-23 119.0
27 TraesCS3A01G351400 chr6A 74.619 197 30 15 3446 3632 787461 787647 9.720000e-08 69.4
28 TraesCS3A01G351400 chr6B 76.724 116 20 5 3446 3559 4458858 4458748 2.100000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G351400 chr3A 599895753 599901161 5408 False 4710.500000 4896 100.000000 1 5409 2 chr3A.!!$F1 5408
1 TraesCS3A01G351400 chr3B 603829331 603834670 5339 False 641.933333 2303 89.619444 1 5403 9 chr3B.!!$F1 5402
2 TraesCS3A01G351400 chr3D 457029990 457034549 4559 False 1320.500000 2187 90.899000 1 5409 4 chr3D.!!$F1 5408
3 TraesCS3A01G351400 chr4B 619222675 619224839 2164 True 338.666667 455 84.559333 994 4370 3 chr4B.!!$R1 3376

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 230 0.109913 AAACCACGTTTCTCCCTCCC 59.890 55.0 0.00 0.00 28.86 4.30 F
994 1041 0.249120 TTCCATAGGCAGGTGTCACG 59.751 55.0 0.00 0.00 0.00 4.35 F
1607 1849 0.032515 TGGCTAGTGGCTAGTGGCTA 60.033 55.0 12.85 4.12 41.46 3.93 F
1694 1936 0.104304 ACGGCGACCATTGATCCTAC 59.896 55.0 16.62 0.00 0.00 3.18 F
2094 2472 0.240945 CAGAAGGCGCGTTTGGAAAT 59.759 50.0 17.42 0.00 0.00 2.17 F
3791 4727 0.388649 CCGTTCCTGGAGTTGACTCG 60.389 60.0 5.16 0.00 43.76 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 1846 0.026803 GCACATGCGCAAGTAGTAGC 59.973 55.000 18.94 13.67 41.68 3.58 R
2322 2700 0.037590 GCATGGTAGGGGTGTTGTGA 59.962 55.000 0.00 0.00 0.00 3.58 R
3300 4228 0.034960 CTCCTCCGACACCTCTCTGA 60.035 60.000 0.00 0.00 0.00 3.27 R
3693 4623 2.307363 CCGAACGGCACATGGATAC 58.693 57.895 0.00 0.00 0.00 2.24 R
3961 5096 0.033366 CGTGGTGTGACTGTGATCCA 59.967 55.000 0.00 0.00 0.00 3.41 R
5268 6677 0.036577 ATGTCTGTCTGCTCAGTGGC 60.037 55.000 0.00 0.00 36.85 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.840630 GCGGCACAAATTGTTTGGCC 61.841 55.000 13.90 13.90 45.47 5.36
63 64 2.032799 TGCCGTGAGTTGAACAACATTC 59.967 45.455 17.85 9.41 43.47 2.67
82 83 6.558009 ACATTCAATCAAGTTTGATCCGATG 58.442 36.000 7.74 12.54 46.60 3.84
182 183 4.271816 CCCCCATCTCGCTCGACG 62.272 72.222 0.00 0.00 45.62 5.12
229 230 0.109913 AAACCACGTTTCTCCCTCCC 59.890 55.000 0.00 0.00 28.86 4.30
323 328 0.812811 CACCCACATCAGATCGGCTG 60.813 60.000 0.00 0.00 46.31 4.85
405 413 1.692519 GGCCGGGCTTTAATCTCTCTA 59.307 52.381 22.87 0.00 0.00 2.43
418 426 5.520748 AATCTCTCTATCTCTCTCTCCCC 57.479 47.826 0.00 0.00 0.00 4.81
419 427 4.228237 TCTCTCTATCTCTCTCTCCCCT 57.772 50.000 0.00 0.00 0.00 4.79
436 448 3.538980 TCCCCTGTCCTATATATACCCCC 59.461 52.174 0.00 0.00 0.00 5.40
444 456 2.519771 ATATATACCCCCGTCGAGCA 57.480 50.000 0.00 0.00 0.00 4.26
490 502 4.120331 GGCGCACATTCCACAGCC 62.120 66.667 10.83 0.00 37.61 4.85
492 504 3.443045 CGCACATTCCACAGCCCC 61.443 66.667 0.00 0.00 0.00 5.80
493 505 2.283101 GCACATTCCACAGCCCCA 60.283 61.111 0.00 0.00 0.00 4.96
494 506 2.345760 GCACATTCCACAGCCCCAG 61.346 63.158 0.00 0.00 0.00 4.45
553 565 0.251653 TAACTGTCTCCGGTCCAGCT 60.252 55.000 14.72 7.86 0.00 4.24
556 568 3.063084 GTCTCCGGTCCAGCTCGT 61.063 66.667 0.00 0.00 0.00 4.18
591 603 1.319541 TTCCTAGCTTCTCGATCCCG 58.680 55.000 0.00 0.00 37.07 5.14
596 608 1.519455 GCTTCTCGATCCCGTGTGG 60.519 63.158 0.00 0.00 37.05 4.17
620 632 1.316706 GCTCGTGTCCTCCTGCTAGT 61.317 60.000 0.00 0.00 0.00 2.57
621 633 0.736053 CTCGTGTCCTCCTGCTAGTC 59.264 60.000 0.00 0.00 0.00 2.59
622 634 1.025113 TCGTGTCCTCCTGCTAGTCG 61.025 60.000 0.00 0.00 0.00 4.18
623 635 1.025113 CGTGTCCTCCTGCTAGTCGA 61.025 60.000 0.00 0.00 0.00 4.20
642 654 1.665679 GATCACCGTGTGTAATGGCTG 59.334 52.381 0.00 0.00 38.72 4.85
700 718 2.279784 CCTTCCTCTCGCCATCGC 60.280 66.667 0.00 0.00 35.26 4.58
785 803 0.882042 CAGTGCTCGTGCTTTGTCCT 60.882 55.000 11.19 0.00 40.48 3.85
990 1037 1.003580 CACTGTTCCATAGGCAGGTGT 59.996 52.381 0.00 0.00 34.79 4.16
992 1039 1.278985 CTGTTCCATAGGCAGGTGTCA 59.721 52.381 0.00 0.00 0.00 3.58
993 1040 1.003118 TGTTCCATAGGCAGGTGTCAC 59.997 52.381 0.00 0.00 0.00 3.67
994 1041 0.249120 TTCCATAGGCAGGTGTCACG 59.751 55.000 0.00 0.00 0.00 4.35
995 1042 1.815421 CCATAGGCAGGTGTCACGC 60.815 63.158 0.00 0.00 0.00 5.34
996 1043 1.079197 CATAGGCAGGTGTCACGCA 60.079 57.895 5.40 0.00 0.00 5.24
1200 1264 3.893763 ATCGACCTCGGCGAGCTG 61.894 66.667 30.55 20.20 41.49 4.24
1598 1840 1.808133 CGATTCTTCCTGGCTAGTGGC 60.808 57.143 0.00 0.00 40.90 5.01
1604 1846 0.687757 TCCTGGCTAGTGGCTAGTGG 60.688 60.000 10.89 0.00 46.26 4.00
1605 1847 1.144936 CTGGCTAGTGGCTAGTGGC 59.855 63.158 4.56 4.56 43.32 5.01
1606 1848 1.306141 TGGCTAGTGGCTAGTGGCT 60.306 57.895 12.85 0.00 41.46 4.75
1607 1849 0.032515 TGGCTAGTGGCTAGTGGCTA 60.033 55.000 12.85 4.12 41.46 3.93
1629 1871 0.109458 ACTTGCGCATGTGCTGATTG 60.109 50.000 29.79 17.20 39.32 2.67
1656 1898 4.147449 CATGGTGCCCTCGCTCGA 62.147 66.667 0.00 0.00 35.36 4.04
1694 1936 0.104304 ACGGCGACCATTGATCCTAC 59.896 55.000 16.62 0.00 0.00 3.18
1695 1937 0.389391 CGGCGACCATTGATCCTACT 59.611 55.000 0.00 0.00 0.00 2.57
1696 1938 1.611977 CGGCGACCATTGATCCTACTA 59.388 52.381 0.00 0.00 0.00 1.82
1697 1939 2.351835 CGGCGACCATTGATCCTACTAG 60.352 54.545 0.00 0.00 0.00 2.57
1718 1960 5.108385 AGCTAGAAATTTGACAAACACCG 57.892 39.130 1.94 0.00 0.00 4.94
1725 1970 4.966965 ATTTGACAAACACCGTTGTACA 57.033 36.364 1.94 0.00 41.78 2.90
1726 1971 3.743567 TTGACAAACACCGTTGTACAC 57.256 42.857 0.00 0.00 41.78 2.90
1727 1972 2.696506 TGACAAACACCGTTGTACACA 58.303 42.857 0.00 0.00 41.78 3.72
1742 1987 2.566833 ACACACATTGCAGCTCCTAA 57.433 45.000 0.00 0.00 0.00 2.69
1743 1988 2.862541 ACACACATTGCAGCTCCTAAA 58.137 42.857 0.00 0.00 0.00 1.85
1744 1989 2.554032 ACACACATTGCAGCTCCTAAAC 59.446 45.455 0.00 0.00 0.00 2.01
1745 1990 2.816087 CACACATTGCAGCTCCTAAACT 59.184 45.455 0.00 0.00 0.00 2.66
1746 1991 3.254166 CACACATTGCAGCTCCTAAACTT 59.746 43.478 0.00 0.00 0.00 2.66
1747 1992 3.254166 ACACATTGCAGCTCCTAAACTTG 59.746 43.478 0.00 0.00 0.00 3.16
1748 1993 3.503363 CACATTGCAGCTCCTAAACTTGA 59.497 43.478 0.00 0.00 0.00 3.02
1749 1994 3.503748 ACATTGCAGCTCCTAAACTTGAC 59.496 43.478 0.00 0.00 0.00 3.18
1750 1995 3.492102 TTGCAGCTCCTAAACTTGACT 57.508 42.857 0.00 0.00 0.00 3.41
1751 1996 4.617253 TTGCAGCTCCTAAACTTGACTA 57.383 40.909 0.00 0.00 0.00 2.59
1752 1997 4.617253 TGCAGCTCCTAAACTTGACTAA 57.383 40.909 0.00 0.00 0.00 2.24
1753 1998 5.165961 TGCAGCTCCTAAACTTGACTAAT 57.834 39.130 0.00 0.00 0.00 1.73
1754 1999 5.560724 TGCAGCTCCTAAACTTGACTAATT 58.439 37.500 0.00 0.00 0.00 1.40
1755 2000 5.643777 TGCAGCTCCTAAACTTGACTAATTC 59.356 40.000 0.00 0.00 0.00 2.17
1756 2001 5.065346 GCAGCTCCTAAACTTGACTAATTCC 59.935 44.000 0.00 0.00 0.00 3.01
1757 2002 6.410540 CAGCTCCTAAACTTGACTAATTCCT 58.589 40.000 0.00 0.00 0.00 3.36
1758 2003 6.881602 CAGCTCCTAAACTTGACTAATTCCTT 59.118 38.462 0.00 0.00 0.00 3.36
1759 2004 7.391833 CAGCTCCTAAACTTGACTAATTCCTTT 59.608 37.037 0.00 0.00 0.00 3.11
1760 2005 7.945109 AGCTCCTAAACTTGACTAATTCCTTTT 59.055 33.333 0.00 0.00 0.00 2.27
1761 2006 8.577296 GCTCCTAAACTTGACTAATTCCTTTTT 58.423 33.333 0.00 0.00 0.00 1.94
1872 2230 5.652744 ATCACTACACTTTCGTGAAACAC 57.347 39.130 0.00 0.00 43.97 3.32
1891 2249 5.366829 ACACGGCTTAGTTGGATTTTAAC 57.633 39.130 0.00 0.00 0.00 2.01
1952 2313 8.931775 GTGTTTTCAAGTTCAAAGTGGTAAATT 58.068 29.630 0.00 0.00 0.00 1.82
1953 2314 9.145865 TGTTTTCAAGTTCAAAGTGGTAAATTC 57.854 29.630 0.00 0.00 0.00 2.17
1954 2315 9.366216 GTTTTCAAGTTCAAAGTGGTAAATTCT 57.634 29.630 0.00 0.00 0.00 2.40
2043 2421 6.039382 GCCATGACGGGAATTTAATTAAGTCT 59.961 38.462 15.27 0.00 31.66 3.24
2046 2424 9.931210 CATGACGGGAATTTAATTAAGTCTAAC 57.069 33.333 15.27 4.19 31.66 2.34
2061 2439 8.934507 TTAAGTCTAACGTCTAGTAGTACTCC 57.065 38.462 5.96 0.00 0.00 3.85
2062 2440 5.912892 AGTCTAACGTCTAGTAGTACTCCC 58.087 45.833 5.96 0.00 0.00 4.30
2063 2441 5.660864 AGTCTAACGTCTAGTAGTACTCCCT 59.339 44.000 5.96 0.00 0.00 4.20
2064 2442 5.983118 GTCTAACGTCTAGTAGTACTCCCTC 59.017 48.000 5.96 0.00 0.00 4.30
2065 2443 3.836365 ACGTCTAGTAGTACTCCCTCC 57.164 52.381 5.96 0.00 0.00 4.30
2066 2444 2.102252 ACGTCTAGTAGTACTCCCTCCG 59.898 54.545 5.96 6.21 0.00 4.63
2069 2447 3.133721 GTCTAGTAGTACTCCCTCCGTCA 59.866 52.174 5.96 0.00 0.00 4.35
2071 2449 1.012841 GTAGTACTCCCTCCGTCACG 58.987 60.000 0.00 0.00 0.00 4.35
2081 2459 4.261888 CCGTCACGGTTCAGAAGG 57.738 61.111 8.54 0.00 42.73 3.46
2082 2460 2.027625 CCGTCACGGTTCAGAAGGC 61.028 63.158 8.54 0.00 42.73 4.35
2083 2461 2.372690 CGTCACGGTTCAGAAGGCG 61.373 63.158 0.00 0.00 0.00 5.52
2084 2462 2.357034 TCACGGTTCAGAAGGCGC 60.357 61.111 0.00 0.00 0.00 6.53
2085 2463 3.777925 CACGGTTCAGAAGGCGCG 61.778 66.667 0.00 0.00 0.00 6.86
2086 2464 4.295119 ACGGTTCAGAAGGCGCGT 62.295 61.111 8.43 0.00 0.00 6.01
2087 2465 3.041940 CGGTTCAGAAGGCGCGTT 61.042 61.111 16.28 16.28 0.00 4.84
2088 2466 2.604174 CGGTTCAGAAGGCGCGTTT 61.604 57.895 17.42 6.10 0.00 3.60
2089 2467 1.082104 GGTTCAGAAGGCGCGTTTG 60.082 57.895 17.42 15.68 0.00 2.93
2090 2468 1.082104 GTTCAGAAGGCGCGTTTGG 60.082 57.895 17.42 11.98 0.00 3.28
2091 2469 1.227704 TTCAGAAGGCGCGTTTGGA 60.228 52.632 17.42 14.06 0.00 3.53
2092 2470 0.816018 TTCAGAAGGCGCGTTTGGAA 60.816 50.000 17.42 18.66 0.00 3.53
2093 2471 0.816018 TCAGAAGGCGCGTTTGGAAA 60.816 50.000 17.42 0.00 0.00 3.13
2094 2472 0.240945 CAGAAGGCGCGTTTGGAAAT 59.759 50.000 17.42 0.00 0.00 2.17
2095 2473 0.958822 AGAAGGCGCGTTTGGAAATT 59.041 45.000 17.42 0.00 0.00 1.82
2096 2474 1.068541 AGAAGGCGCGTTTGGAAATTC 60.069 47.619 17.42 1.26 0.00 2.17
2097 2475 0.958822 AAGGCGCGTTTGGAAATTCT 59.041 45.000 10.00 0.00 0.00 2.40
2098 2476 0.521735 AGGCGCGTTTGGAAATTCTC 59.478 50.000 8.43 0.00 0.00 2.87
2099 2477 0.793104 GGCGCGTTTGGAAATTCTCG 60.793 55.000 8.43 0.00 0.00 4.04
2100 2478 0.793104 GCGCGTTTGGAAATTCTCGG 60.793 55.000 8.43 0.00 0.00 4.63
2101 2479 0.793861 CGCGTTTGGAAATTCTCGGA 59.206 50.000 0.00 0.00 0.00 4.55
2102 2480 1.195900 CGCGTTTGGAAATTCTCGGAA 59.804 47.619 0.00 0.00 0.00 4.30
2103 2481 2.581637 GCGTTTGGAAATTCTCGGAAC 58.418 47.619 0.00 0.00 0.00 3.62
2104 2482 2.667448 GCGTTTGGAAATTCTCGGAACC 60.667 50.000 0.00 0.00 0.00 3.62
2105 2483 2.812011 CGTTTGGAAATTCTCGGAACCT 59.188 45.455 0.00 0.00 0.00 3.50
2106 2484 3.998341 CGTTTGGAAATTCTCGGAACCTA 59.002 43.478 0.00 0.00 0.00 3.08
2107 2485 4.092968 CGTTTGGAAATTCTCGGAACCTAG 59.907 45.833 0.00 0.00 0.00 3.02
2108 2486 5.243207 GTTTGGAAATTCTCGGAACCTAGA 58.757 41.667 0.00 0.00 0.00 2.43
2109 2487 5.693769 TTGGAAATTCTCGGAACCTAGAT 57.306 39.130 0.00 0.00 0.00 1.98
2110 2488 5.023533 TGGAAATTCTCGGAACCTAGATG 57.976 43.478 0.00 0.00 0.00 2.90
2111 2489 4.141711 TGGAAATTCTCGGAACCTAGATGG 60.142 45.833 0.00 0.00 42.93 3.51
2128 2506 8.195165 CCTAGATGGTTATCTATTGGTTGAGA 57.805 38.462 0.00 0.00 43.19 3.27
2129 2507 8.310382 CCTAGATGGTTATCTATTGGTTGAGAG 58.690 40.741 0.00 0.00 43.19 3.20
2130 2508 7.921041 AGATGGTTATCTATTGGTTGAGAGA 57.079 36.000 0.00 0.00 41.82 3.10
2131 2509 8.503428 AGATGGTTATCTATTGGTTGAGAGAT 57.497 34.615 0.00 0.00 41.82 2.75
2132 2510 8.373981 AGATGGTTATCTATTGGTTGAGAGATG 58.626 37.037 0.00 0.00 41.82 2.90
2133 2511 6.830912 TGGTTATCTATTGGTTGAGAGATGG 58.169 40.000 0.00 0.00 31.25 3.51
2134 2512 6.183361 TGGTTATCTATTGGTTGAGAGATGGG 60.183 42.308 0.00 0.00 31.25 4.00
2135 2513 6.183361 GGTTATCTATTGGTTGAGAGATGGGT 60.183 42.308 0.00 0.00 31.25 4.51
2136 2514 5.983333 ATCTATTGGTTGAGAGATGGGTT 57.017 39.130 0.00 0.00 0.00 4.11
2137 2515 8.429641 GTTATCTATTGGTTGAGAGATGGGTTA 58.570 37.037 0.00 0.00 31.25 2.85
2138 2516 6.884472 TCTATTGGTTGAGAGATGGGTTAA 57.116 37.500 0.00 0.00 0.00 2.01
2139 2517 7.265599 TCTATTGGTTGAGAGATGGGTTAAA 57.734 36.000 0.00 0.00 0.00 1.52
2140 2518 7.695055 TCTATTGGTTGAGAGATGGGTTAAAA 58.305 34.615 0.00 0.00 0.00 1.52
2141 2519 8.167392 TCTATTGGTTGAGAGATGGGTTAAAAA 58.833 33.333 0.00 0.00 0.00 1.94
2163 2541 7.760131 AAAATAACATTCACACTATGCATGC 57.240 32.000 11.82 11.82 35.54 4.06
2164 2542 6.453926 AATAACATTCACACTATGCATGCA 57.546 33.333 25.04 25.04 35.54 3.96
2165 2543 4.994907 AACATTCACACTATGCATGCAT 57.005 36.364 33.92 33.92 35.54 3.96
2166 2544 7.748691 ATAACATTCACACTATGCATGCATA 57.251 32.000 32.64 32.64 35.54 3.14
2167 2545 6.644248 AACATTCACACTATGCATGCATAT 57.356 33.333 34.35 23.05 35.54 1.78
2168 2546 7.748691 AACATTCACACTATGCATGCATATA 57.251 32.000 34.35 19.87 35.54 0.86
2169 2547 7.748691 ACATTCACACTATGCATGCATATAA 57.251 32.000 34.35 23.51 35.54 0.98
2170 2548 8.168790 ACATTCACACTATGCATGCATATAAA 57.831 30.769 34.35 23.76 35.54 1.40
2171 2549 8.631797 ACATTCACACTATGCATGCATATAAAA 58.368 29.630 34.35 24.04 35.54 1.52
2176 2554 9.345517 CACACTATGCATGCATATAAAAATACC 57.654 33.333 34.35 0.00 38.13 2.73
2177 2555 9.300681 ACACTATGCATGCATATAAAAATACCT 57.699 29.630 34.35 13.09 38.13 3.08
2182 2560 8.248904 TGCATGCATATAAAAATACCTCCTTT 57.751 30.769 18.46 0.00 0.00 3.11
2201 2579 7.202016 TCCTTTGATCCATATTAATTGTCGC 57.798 36.000 0.00 0.00 0.00 5.19
2202 2580 6.770303 TCCTTTGATCCATATTAATTGTCGCA 59.230 34.615 0.00 0.00 0.00 5.10
2203 2581 7.284261 TCCTTTGATCCATATTAATTGTCGCAA 59.716 33.333 0.00 0.00 0.00 4.85
2204 2582 7.379529 CCTTTGATCCATATTAATTGTCGCAAC 59.620 37.037 0.00 0.00 0.00 4.17
2209 2587 9.944663 GATCCATATTAATTGTCGCAACTTTAA 57.055 29.630 0.00 0.00 0.00 1.52
2245 2623 8.925161 TTTTTGCTGAAATTATCCTAAATCCG 57.075 30.769 0.00 0.00 0.00 4.18
2246 2624 7.639113 TTTGCTGAAATTATCCTAAATCCGT 57.361 32.000 0.00 0.00 0.00 4.69
2247 2625 6.618287 TGCTGAAATTATCCTAAATCCGTG 57.382 37.500 0.00 0.00 0.00 4.94
2248 2626 5.530915 TGCTGAAATTATCCTAAATCCGTGG 59.469 40.000 0.00 0.00 0.00 4.94
2249 2627 5.562890 GCTGAAATTATCCTAAATCCGTGGC 60.563 44.000 0.00 0.00 0.00 5.01
2250 2628 5.441500 TGAAATTATCCTAAATCCGTGGCA 58.558 37.500 0.00 0.00 0.00 4.92
2251 2629 5.888724 TGAAATTATCCTAAATCCGTGGCAA 59.111 36.000 0.00 0.00 0.00 4.52
2252 2630 5.767816 AATTATCCTAAATCCGTGGCAAC 57.232 39.130 0.00 0.00 0.00 4.17
2253 2631 4.497291 TTATCCTAAATCCGTGGCAACT 57.503 40.909 0.00 0.00 37.61 3.16
2254 2632 5.617528 TTATCCTAAATCCGTGGCAACTA 57.382 39.130 0.00 0.00 37.61 2.24
2255 2633 3.985019 TCCTAAATCCGTGGCAACTAA 57.015 42.857 0.00 0.00 37.61 2.24
2256 2634 4.497291 TCCTAAATCCGTGGCAACTAAT 57.503 40.909 0.00 0.00 37.61 1.73
2257 2635 5.617528 TCCTAAATCCGTGGCAACTAATA 57.382 39.130 0.00 0.00 37.61 0.98
2258 2636 6.182507 TCCTAAATCCGTGGCAACTAATAT 57.817 37.500 0.00 0.00 37.61 1.28
2259 2637 7.305813 TCCTAAATCCGTGGCAACTAATATA 57.694 36.000 0.00 0.00 37.61 0.86
2260 2638 7.383687 TCCTAAATCCGTGGCAACTAATATAG 58.616 38.462 0.00 0.00 37.61 1.31
2261 2639 7.233962 TCCTAAATCCGTGGCAACTAATATAGA 59.766 37.037 0.00 0.00 37.61 1.98
2262 2640 8.041323 CCTAAATCCGTGGCAACTAATATAGAT 58.959 37.037 0.00 0.00 37.61 1.98
2263 2641 7.907214 AAATCCGTGGCAACTAATATAGATC 57.093 36.000 0.00 0.00 37.61 2.75
2264 2642 5.055642 TCCGTGGCAACTAATATAGATCG 57.944 43.478 0.00 0.00 37.61 3.69
2265 2643 4.082408 TCCGTGGCAACTAATATAGATCGG 60.082 45.833 0.00 0.00 37.61 4.18
2266 2644 4.082408 CCGTGGCAACTAATATAGATCGGA 60.082 45.833 0.00 0.00 35.94 4.55
2267 2645 5.466819 CGTGGCAACTAATATAGATCGGAA 58.533 41.667 0.00 0.00 37.61 4.30
2268 2646 5.573282 CGTGGCAACTAATATAGATCGGAAG 59.427 44.000 0.00 0.00 37.61 3.46
2271 2649 6.071334 TGGCAACTAATATAGATCGGAAGGAG 60.071 42.308 0.00 0.00 37.61 3.69
2281 2659 4.290942 AGATCGGAAGGAGTACCAGAATT 58.709 43.478 0.00 0.00 38.94 2.17
2282 2660 4.342665 AGATCGGAAGGAGTACCAGAATTC 59.657 45.833 0.00 0.00 38.94 2.17
2302 2680 4.193826 TCGTTCCTGGAGAGAATTGAAG 57.806 45.455 0.00 0.00 0.00 3.02
2304 2682 3.615155 GTTCCTGGAGAGAATTGAAGGG 58.385 50.000 0.00 0.00 0.00 3.95
2306 2684 1.283029 CCTGGAGAGAATTGAAGGGCA 59.717 52.381 0.00 0.00 0.00 5.36
2307 2685 2.291153 CCTGGAGAGAATTGAAGGGCAA 60.291 50.000 0.00 0.00 41.53 4.52
2322 2700 5.657745 TGAAGGGCAATCAACATGAACATAT 59.342 36.000 0.00 0.00 0.00 1.78
2329 2707 6.807720 GCAATCAACATGAACATATCACAACA 59.192 34.615 0.00 0.00 41.93 3.33
2337 2715 3.926058 ACATATCACAACACCCCTACC 57.074 47.619 0.00 0.00 0.00 3.18
2338 2716 3.186283 ACATATCACAACACCCCTACCA 58.814 45.455 0.00 0.00 0.00 3.25
2339 2717 3.785887 ACATATCACAACACCCCTACCAT 59.214 43.478 0.00 0.00 0.00 3.55
2340 2718 2.806945 ATCACAACACCCCTACCATG 57.193 50.000 0.00 0.00 0.00 3.66
2411 2789 0.905357 GCTGGAGTGACATACCACCT 59.095 55.000 0.00 0.00 37.76 4.00
2412 2790 1.406069 GCTGGAGTGACATACCACCTG 60.406 57.143 0.00 0.00 37.76 4.00
2428 2806 3.451902 CCACCTGCCATGTCCAAATATTT 59.548 43.478 0.00 0.00 0.00 1.40
2490 2885 7.821595 TGGAAACAGTACATTGATACGTAAG 57.178 36.000 0.00 0.00 38.94 2.34
2519 2914 1.518929 GATTGCAGTCGATGTAGACGC 59.481 52.381 0.00 6.88 45.26 5.19
2545 2940 4.695217 AAAACATGTATTGATCGCGGTT 57.305 36.364 6.13 0.00 0.00 4.44
2548 2943 3.266636 ACATGTATTGATCGCGGTTCAA 58.733 40.909 21.77 21.77 37.49 2.69
2549 2944 3.876914 ACATGTATTGATCGCGGTTCAAT 59.123 39.130 28.46 28.46 44.05 2.57
2605 3010 1.703411 ACATGGTGTCCACAAAAGGG 58.297 50.000 0.00 0.00 35.80 3.95
2633 3038 0.730265 TCGTGCACCTTTGTCAACAC 59.270 50.000 12.15 0.00 0.00 3.32
2635 3040 1.793714 CGTGCACCTTTGTCAACACAC 60.794 52.381 12.15 0.00 29.76 3.82
2637 3042 1.201181 TGCACCTTTGTCAACACACAC 59.799 47.619 0.00 0.00 29.76 3.82
2638 3043 1.201181 GCACCTTTGTCAACACACACA 59.799 47.619 0.00 0.00 29.76 3.72
2639 3044 2.862512 CACCTTTGTCAACACACACAC 58.137 47.619 0.00 0.00 29.76 3.82
2640 3045 2.227626 CACCTTTGTCAACACACACACA 59.772 45.455 0.00 0.00 29.76 3.72
2641 3046 2.227865 ACCTTTGTCAACACACACACAC 59.772 45.455 0.00 0.00 29.76 3.82
2642 3047 2.227626 CCTTTGTCAACACACACACACA 59.772 45.455 0.00 0.00 29.76 3.72
2643 3048 2.979401 TTGTCAACACACACACACAC 57.021 45.000 0.00 0.00 29.76 3.82
2644 3049 1.884235 TGTCAACACACACACACACA 58.116 45.000 0.00 0.00 0.00 3.72
2645 3050 1.533299 TGTCAACACACACACACACAC 59.467 47.619 0.00 0.00 0.00 3.82
2646 3051 1.533299 GTCAACACACACACACACACA 59.467 47.619 0.00 0.00 0.00 3.72
2647 3052 1.533299 TCAACACACACACACACACAC 59.467 47.619 0.00 0.00 0.00 3.82
2648 3053 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
2649 3054 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2650 3055 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3060 3465 5.401531 AACGACTACTATTCCAAGCTTGA 57.598 39.130 28.05 9.31 0.00 3.02
3085 3492 1.726853 AAGCATAGCAACAGACGGAC 58.273 50.000 0.00 0.00 0.00 4.79
3125 3551 0.881118 ATGACAATTCCACACGTGCC 59.119 50.000 17.22 0.00 0.00 5.01
3141 3567 1.003866 GTGCCGAGTCACTGTTTTGTC 60.004 52.381 0.00 0.00 34.29 3.18
3147 3573 3.179795 CGAGTCACTGTTTTGTCTGTACG 59.820 47.826 0.00 0.00 0.00 3.67
3149 3575 2.605818 GTCACTGTTTTGTCTGTACGCA 59.394 45.455 0.00 0.00 0.00 5.24
3160 3586 3.181479 TGTCTGTACGCACTTCAAAGACT 60.181 43.478 5.20 0.00 34.91 3.24
3164 3590 4.046462 TGTACGCACTTCAAAGACTGTAC 58.954 43.478 0.00 6.52 33.40 2.90
3166 3592 3.527533 ACGCACTTCAAAGACTGTACAA 58.472 40.909 0.00 0.00 0.00 2.41
3167 3593 4.127171 ACGCACTTCAAAGACTGTACAAT 58.873 39.130 0.00 0.00 0.00 2.71
3187 3669 7.466746 ACAATACAAGTTAACAGAATGCCAT 57.533 32.000 8.61 0.00 42.53 4.40
3228 3716 3.720949 AAAGACAGTGCTACGTACACA 57.279 42.857 21.90 9.44 40.59 3.72
3230 3718 3.217599 AGACAGTGCTACGTACACATG 57.782 47.619 21.90 18.81 40.59 3.21
3232 3720 1.272490 ACAGTGCTACGTACACATGCT 59.728 47.619 21.90 5.18 40.59 3.79
3233 3721 2.490509 ACAGTGCTACGTACACATGCTA 59.509 45.455 21.90 2.88 40.59 3.49
3234 3722 3.057104 ACAGTGCTACGTACACATGCTAA 60.057 43.478 21.90 0.00 40.59 3.09
3235 3723 3.547868 CAGTGCTACGTACACATGCTAAG 59.452 47.826 21.90 1.66 40.59 2.18
3236 3724 3.442625 AGTGCTACGTACACATGCTAAGA 59.557 43.478 21.90 0.00 40.59 2.10
3237 3725 3.546670 GTGCTACGTACACATGCTAAGAC 59.453 47.826 17.71 1.52 37.96 3.01
3238 3726 3.442625 TGCTACGTACACATGCTAAGACT 59.557 43.478 5.50 0.00 0.00 3.24
3239 3727 4.082408 TGCTACGTACACATGCTAAGACTT 60.082 41.667 5.50 0.00 0.00 3.01
3240 3728 4.863131 GCTACGTACACATGCTAAGACTTT 59.137 41.667 0.00 0.00 0.00 2.66
3241 3729 5.347907 GCTACGTACACATGCTAAGACTTTT 59.652 40.000 0.00 0.00 0.00 2.27
3242 3730 6.529125 GCTACGTACACATGCTAAGACTTTTA 59.471 38.462 0.00 0.00 0.00 1.52
3243 3731 6.701432 ACGTACACATGCTAAGACTTTTAC 57.299 37.500 0.00 0.00 0.00 2.01
3244 3732 6.218019 ACGTACACATGCTAAGACTTTTACA 58.782 36.000 0.00 0.00 0.00 2.41
3245 3733 6.872020 ACGTACACATGCTAAGACTTTTACAT 59.128 34.615 0.00 0.00 0.00 2.29
3246 3734 7.386848 ACGTACACATGCTAAGACTTTTACATT 59.613 33.333 0.00 0.00 0.00 2.71
3247 3735 7.898309 CGTACACATGCTAAGACTTTTACATTC 59.102 37.037 0.00 0.00 0.00 2.67
3248 3736 6.831769 ACACATGCTAAGACTTTTACATTCG 58.168 36.000 0.00 0.00 0.00 3.34
3249 3737 6.649141 ACACATGCTAAGACTTTTACATTCGA 59.351 34.615 0.00 0.00 0.00 3.71
3250 3738 7.334421 ACACATGCTAAGACTTTTACATTCGAT 59.666 33.333 0.00 0.00 0.00 3.59
3251 3739 7.848051 CACATGCTAAGACTTTTACATTCGATC 59.152 37.037 0.00 0.00 0.00 3.69
3252 3740 7.549134 ACATGCTAAGACTTTTACATTCGATCA 59.451 33.333 0.00 0.00 0.00 2.92
3253 3741 8.554528 CATGCTAAGACTTTTACATTCGATCAT 58.445 33.333 0.00 0.00 0.00 2.45
3254 3742 7.909267 TGCTAAGACTTTTACATTCGATCATG 58.091 34.615 0.00 0.00 0.00 3.07
3255 3743 7.763985 TGCTAAGACTTTTACATTCGATCATGA 59.236 33.333 0.00 0.00 0.00 3.07
3256 3744 8.604035 GCTAAGACTTTTACATTCGATCATGAA 58.396 33.333 0.00 0.00 0.00 2.57
3259 3747 9.778993 AAGACTTTTACATTCGATCATGAATTG 57.221 29.630 0.00 0.00 36.46 2.32
3260 3748 8.950210 AGACTTTTACATTCGATCATGAATTGT 58.050 29.630 0.00 2.29 36.46 2.71
3261 3749 9.559958 GACTTTTACATTCGATCATGAATTGTT 57.440 29.630 0.00 0.00 36.46 2.83
3277 3765 7.542534 TGAATTGTTTGTCACTAAACGTACT 57.457 32.000 0.00 0.00 42.11 2.73
3290 4218 7.042992 TCACTAAACGTACTTATATGCATGTGC 60.043 37.037 10.16 0.95 42.50 4.57
3322 4250 1.847737 AGAGAGGTGTCGGAGGAGTAT 59.152 52.381 0.00 0.00 0.00 2.12
3660 4590 5.871524 TCCAGGTATATACTCATCGTACGTC 59.128 44.000 16.05 0.00 0.00 4.34
3661 4591 5.064452 CCAGGTATATACTCATCGTACGTCC 59.936 48.000 16.05 2.60 0.00 4.79
3663 4593 5.873712 AGGTATATACTCATCGTACGTCCAG 59.126 44.000 16.05 11.27 0.00 3.86
3668 4598 4.548991 ACTCATCGTACGTCCAGTTATC 57.451 45.455 16.05 0.00 0.00 1.75
3669 4599 3.002042 ACTCATCGTACGTCCAGTTATCG 59.998 47.826 16.05 0.00 0.00 2.92
3791 4727 0.388649 CCGTTCCTGGAGTTGACTCG 60.389 60.000 5.16 0.00 43.76 4.18
3796 4732 1.353358 TCCTGGAGTTGACTCGGACTA 59.647 52.381 5.16 0.00 43.76 2.59
3909 5044 4.689345 ACTGCATACGTACTTTTGTCTTCC 59.311 41.667 0.00 0.00 0.00 3.46
3925 5060 2.553602 TCTTCCGAAGCAACTACGTACA 59.446 45.455 3.00 0.00 0.00 2.90
3932 5067 2.453521 AGCAACTACGTACATCCCTCA 58.546 47.619 0.00 0.00 0.00 3.86
3961 5096 2.048023 CATGCATGTTCTGGCCGGT 61.048 57.895 18.91 0.00 0.00 5.28
3970 5105 2.124983 CTGGCCGGTGGATCACAG 60.125 66.667 2.29 0.00 35.86 3.66
3971 5106 2.927856 TGGCCGGTGGATCACAGT 60.928 61.111 1.90 0.00 35.86 3.55
3972 5107 2.125106 GGCCGGTGGATCACAGTC 60.125 66.667 1.90 0.00 35.86 3.51
3973 5108 2.662596 GCCGGTGGATCACAGTCA 59.337 61.111 1.90 0.00 35.86 3.41
3974 5109 1.741770 GCCGGTGGATCACAGTCAC 60.742 63.158 1.90 0.00 35.86 3.67
3976 5111 0.670546 CCGGTGGATCACAGTCACAC 60.671 60.000 0.00 0.00 35.86 3.82
3979 5114 1.512926 GTGGATCACAGTCACACCAC 58.487 55.000 0.00 0.00 40.33 4.16
3980 5115 0.033366 TGGATCACAGTCACACCACG 59.967 55.000 0.00 0.00 0.00 4.94
3981 5116 0.317160 GGATCACAGTCACACCACGA 59.683 55.000 0.00 0.00 0.00 4.35
3982 5117 1.670087 GGATCACAGTCACACCACGAG 60.670 57.143 0.00 0.00 0.00 4.18
3983 5118 0.319900 ATCACAGTCACACCACGAGC 60.320 55.000 0.00 0.00 0.00 5.03
3985 5120 2.421314 CAGTCACACCACGAGCCA 59.579 61.111 0.00 0.00 0.00 4.75
3992 5128 1.449601 CACCACGAGCCATGTACCC 60.450 63.158 0.00 0.00 0.00 3.69
4002 5138 2.158534 AGCCATGTACCCAACAACAAGA 60.159 45.455 0.00 0.00 42.70 3.02
4057 5223 2.033801 GGCATAGACATTCCATGTGCAC 59.966 50.000 10.75 10.75 45.03 4.57
4058 5224 2.684374 GCATAGACATTCCATGTGCACA 59.316 45.455 24.08 24.08 45.03 4.57
4070 5236 1.730547 GTGCACAAGCCATGAACGC 60.731 57.895 13.17 0.00 41.13 4.84
4072 5238 1.154150 GCACAAGCCATGAACGCTC 60.154 57.895 0.00 0.00 34.84 5.03
4076 5242 0.099968 CAAGCCATGAACGCTCCATG 59.900 55.000 0.00 0.00 40.66 3.66
4077 5243 1.660560 AAGCCATGAACGCTCCATGC 61.661 55.000 0.00 3.85 39.89 4.06
4078 5244 2.409055 GCCATGAACGCTCCATGCA 61.409 57.895 0.00 0.00 43.06 3.96
4081 5247 3.276546 CCATGAACGCTCCATGCATGG 62.277 57.143 35.76 35.76 46.78 3.66
4089 5255 3.276109 CCATGCATGGCGTCAACA 58.724 55.556 31.95 0.00 41.75 3.33
4090 5256 1.585517 CCATGCATGGCGTCAACAA 59.414 52.632 31.95 0.00 41.75 2.83
4091 5257 0.457166 CCATGCATGGCGTCAACAAG 60.457 55.000 31.95 5.34 41.75 3.16
4092 5258 1.074319 CATGCATGGCGTCAACAAGC 61.074 55.000 19.40 0.00 0.00 4.01
4093 5259 1.246056 ATGCATGGCGTCAACAAGCT 61.246 50.000 0.00 0.00 0.00 3.74
4094 5260 0.605050 TGCATGGCGTCAACAAGCTA 60.605 50.000 0.00 0.00 0.00 3.32
4095 5261 0.097674 GCATGGCGTCAACAAGCTAG 59.902 55.000 0.00 0.00 0.00 3.42
4096 5262 0.097674 CATGGCGTCAACAAGCTAGC 59.902 55.000 6.62 6.62 0.00 3.42
4097 5263 0.321564 ATGGCGTCAACAAGCTAGCA 60.322 50.000 18.83 0.00 0.00 3.49
4098 5264 0.950555 TGGCGTCAACAAGCTAGCAG 60.951 55.000 18.83 11.61 0.00 4.24
4099 5265 1.133458 GCGTCAACAAGCTAGCAGC 59.867 57.895 18.83 5.23 42.84 5.25
4111 5277 1.268335 GCTAGCAGCTGTACGAGAGTC 60.268 57.143 16.64 0.00 41.37 3.36
4127 5293 6.904498 ACGAGAGTCACTTATATATGCTCAC 58.096 40.000 0.00 0.00 44.19 3.51
4128 5294 6.712998 ACGAGAGTCACTTATATATGCTCACT 59.287 38.462 0.00 0.00 44.19 3.41
4129 5295 7.878644 ACGAGAGTCACTTATATATGCTCACTA 59.121 37.037 0.00 0.00 44.19 2.74
4132 5298 9.581289 AGAGTCACTTATATATGCTCACTAGTT 57.419 33.333 0.00 0.00 0.00 2.24
4231 5453 1.810030 CGCGCTCTTCTACAACCCC 60.810 63.158 5.56 0.00 0.00 4.95
4234 5456 1.726853 CGCTCTTCTACAACCCCAAG 58.273 55.000 0.00 0.00 0.00 3.61
4448 5670 4.893795 GCGTCTTTCAGCGTGTATAATTT 58.106 39.130 0.00 0.00 0.00 1.82
4457 5679 9.541143 TTTCAGCGTGTATAATTTATCTGATGA 57.459 29.630 0.00 0.00 0.00 2.92
4499 5722 1.404315 GCGCTAGCCCCTACATATGAC 60.404 57.143 10.38 0.00 37.42 3.06
4529 5752 2.800736 GGCTAAACTGCATGCCGG 59.199 61.111 16.68 10.71 35.79 6.13
4530 5753 2.046285 GGCTAAACTGCATGCCGGT 61.046 57.895 16.68 11.41 35.79 5.28
4547 5773 2.165030 CCGGTTCGTGTAGTATGTCCTT 59.835 50.000 0.00 0.00 0.00 3.36
4571 5797 4.600692 TGATATGTGTACCCCAATCGAG 57.399 45.455 0.00 0.00 0.00 4.04
4631 5857 6.653526 TTATATTGGCATCTTGTTCCCATG 57.346 37.500 0.00 0.00 0.00 3.66
4638 5864 3.947196 GCATCTTGTTCCCATGTATCACA 59.053 43.478 0.00 0.00 0.00 3.58
4678 5905 1.335810 TCGTCTTGCGTACAACTGAGT 59.664 47.619 0.00 0.00 42.13 3.41
4679 5906 1.452025 CGTCTTGCGTACAACTGAGTG 59.548 52.381 0.00 0.00 35.54 3.51
4696 5923 3.112580 GAGTGCTGAACTAATCTCGAGC 58.887 50.000 7.81 0.00 40.07 5.03
4713 5944 1.538512 GAGCACCGCATCATGCATATT 59.461 47.619 11.00 0.00 45.36 1.28
4822 6209 8.638873 ACCGAATATAAACATGTACTGATCTGA 58.361 33.333 6.60 0.00 0.00 3.27
4823 6210 8.916654 CCGAATATAAACATGTACTGATCTGAC 58.083 37.037 6.60 1.58 0.00 3.51
4824 6211 9.463443 CGAATATAAACATGTACTGATCTGACA 57.537 33.333 6.60 6.92 0.00 3.58
4905 6296 1.582968 GGGCACTTGCACATCACAG 59.417 57.895 3.15 0.00 45.57 3.66
4918 6309 4.093115 GCACATCACAGATCTGTTCAAGAG 59.907 45.833 25.84 13.41 42.83 2.85
4946 6338 1.677576 TGAAACAGCTGCACTTGGAAG 59.322 47.619 15.27 0.00 0.00 3.46
4974 6366 4.832608 GGCCGGCCACTTACTCCG 62.833 72.222 40.73 0.00 42.58 4.63
4984 6383 2.036733 CCACTTACTCCGAACCAACTGA 59.963 50.000 0.00 0.00 0.00 3.41
4990 6389 2.028930 ACTCCGAACCAACTGATCTGAC 60.029 50.000 6.60 0.00 0.00 3.51
4992 6391 2.069273 CCGAACCAACTGATCTGACAC 58.931 52.381 6.60 0.00 0.00 3.67
5020 6421 7.962964 TGTTCAATCTAACTTTCCACTGTAG 57.037 36.000 0.00 0.00 0.00 2.74
5056 6457 3.569701 ACACATGGGCTACAGTGAAAAAG 59.430 43.478 11.34 0.00 34.45 2.27
5157 6563 3.197790 CGGTGAGAATGCCCAGCG 61.198 66.667 0.00 0.00 45.49 5.18
5185 6591 2.877168 AGCAAAGCTCAGCTATATGTGC 59.123 45.455 0.00 5.33 38.25 4.57
5261 6670 1.003262 CACGTGCGCAATGGGAAAAG 61.003 55.000 14.00 0.00 0.00 2.27
5268 6677 1.066929 CGCAATGGGAAAAGGGAAAGG 60.067 52.381 0.00 0.00 0.00 3.11
5327 6736 1.280421 AGTGGAAGAAAGCAGGGCTAG 59.720 52.381 0.00 0.00 38.25 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.767230 CAGCAGTCGCACGAACGG 61.767 66.667 0.00 0.00 42.27 4.44
193 194 1.073125 GTTTTTGTGGGGGAATTGGGG 59.927 52.381 0.00 0.00 0.00 4.96
303 308 0.977627 AGCCGATCTGATGTGGGTGA 60.978 55.000 8.86 0.00 0.00 4.02
326 331 4.467084 TCCATGGAGGAACGGCGC 62.467 66.667 11.44 0.00 45.65 6.53
383 391 1.892391 GAGATTAAAGCCCGGCCGG 60.892 63.158 37.99 37.99 0.00 6.13
384 392 0.880718 GAGAGATTAAAGCCCGGCCG 60.881 60.000 21.04 21.04 0.00 6.13
385 393 0.470341 AGAGAGATTAAAGCCCGGCC 59.530 55.000 5.55 0.00 0.00 6.13
386 394 3.259625 AGATAGAGAGATTAAAGCCCGGC 59.740 47.826 0.00 0.00 0.00 6.13
405 413 1.619298 AGGACAGGGGAGAGAGAGAT 58.381 55.000 0.00 0.00 0.00 2.75
418 426 3.881688 CGACGGGGGTATATATAGGACAG 59.118 52.174 0.00 0.00 0.00 3.51
419 427 3.523157 TCGACGGGGGTATATATAGGACA 59.477 47.826 0.00 0.00 0.00 4.02
444 456 1.248785 TAACTCTTCGCTGAGCCGGT 61.249 55.000 1.90 0.00 37.58 5.28
490 502 2.328099 GCTTGGACGAACTGCTGGG 61.328 63.158 0.00 0.00 0.00 4.45
492 504 1.621301 CGAGCTTGGACGAACTGCTG 61.621 60.000 0.00 0.00 33.83 4.41
493 505 1.373497 CGAGCTTGGACGAACTGCT 60.373 57.895 0.00 0.00 36.63 4.24
494 506 1.347817 CTCGAGCTTGGACGAACTGC 61.348 60.000 0.00 0.00 38.05 4.40
553 565 1.640428 AAGGTACGTACGATCGACGA 58.360 50.000 31.78 19.40 45.77 4.20
556 568 2.632377 AGGAAAGGTACGTACGATCGA 58.368 47.619 24.34 2.23 34.70 3.59
591 603 1.080025 GACACGAGCTACCCCACAC 60.080 63.158 0.00 0.00 0.00 3.82
596 608 1.380112 AGGAGGACACGAGCTACCC 60.380 63.158 0.00 0.00 0.00 3.69
597 609 1.810532 CAGGAGGACACGAGCTACC 59.189 63.158 0.00 0.00 0.00 3.18
620 632 1.737696 GCCATTACACACGGTGATCGA 60.738 52.381 16.29 0.00 42.43 3.59
621 633 0.650512 GCCATTACACACGGTGATCG 59.349 55.000 16.29 5.34 45.88 3.69
622 634 1.665679 CAGCCATTACACACGGTGATC 59.334 52.381 16.29 0.00 36.96 2.92
623 635 1.003118 ACAGCCATTACACACGGTGAT 59.997 47.619 16.29 5.03 36.96 3.06
642 654 1.331756 CTTGATGGTTCATGGCGCTAC 59.668 52.381 7.64 0.00 0.00 3.58
700 718 0.599466 ATCTCGATCGTGCATGGCAG 60.599 55.000 15.94 2.27 40.08 4.85
785 803 2.476126 TGGAAGAATTAAACGGCCGA 57.524 45.000 35.90 10.13 0.00 5.54
917 964 1.324740 AACCCGACGGCTATGCAGTA 61.325 55.000 8.86 0.00 37.05 2.74
918 965 2.656069 AACCCGACGGCTATGCAGT 61.656 57.895 8.86 0.00 40.02 4.40
919 966 2.173669 CAACCCGACGGCTATGCAG 61.174 63.158 8.86 0.00 0.00 4.41
920 967 2.125310 CAACCCGACGGCTATGCA 60.125 61.111 8.86 0.00 0.00 3.96
927 974 1.170290 AGAAAAAGGCAACCCGACGG 61.170 55.000 6.99 6.99 35.76 4.79
996 1043 4.166888 ATGCAGTCCGCCATCGCT 62.167 61.111 0.00 0.00 41.33 4.93
1082 1146 2.432628 GCGGCTTGACGTAGCAGT 60.433 61.111 12.17 0.00 43.02 4.40
1380 1444 4.424566 TACGTCCGCGGCTGGTTC 62.425 66.667 23.51 5.28 43.45 3.62
1598 1840 1.134367 TGCGCAAGTAGTAGCCACTAG 59.866 52.381 8.16 0.00 37.94 2.57
1601 1843 0.652592 CATGCGCAAGTAGTAGCCAC 59.347 55.000 17.11 0.00 41.68 5.01
1604 1846 0.026803 GCACATGCGCAAGTAGTAGC 59.973 55.000 18.94 13.67 41.68 3.58
1656 1898 4.495422 CCGTGTAATTACTTCTCAGCTGT 58.505 43.478 14.67 0.00 0.00 4.40
1658 1900 3.522553 GCCGTGTAATTACTTCTCAGCT 58.477 45.455 16.33 0.00 0.00 4.24
1694 1936 6.073222 ACGGTGTTTGTCAAATTTCTAGCTAG 60.073 38.462 15.01 15.01 0.00 3.42
1695 1937 5.761234 ACGGTGTTTGTCAAATTTCTAGCTA 59.239 36.000 0.40 0.00 0.00 3.32
1696 1938 4.578928 ACGGTGTTTGTCAAATTTCTAGCT 59.421 37.500 0.40 0.00 0.00 3.32
1697 1939 4.855531 ACGGTGTTTGTCAAATTTCTAGC 58.144 39.130 0.40 0.00 0.00 3.42
1718 1960 2.350772 GGAGCTGCAATGTGTGTACAAC 60.351 50.000 0.00 0.00 40.84 3.32
1725 1970 3.146104 AGTTTAGGAGCTGCAATGTGT 57.854 42.857 8.35 0.00 0.00 3.72
1726 1971 3.503363 TCAAGTTTAGGAGCTGCAATGTG 59.497 43.478 8.35 0.00 0.00 3.21
1727 1972 3.503748 GTCAAGTTTAGGAGCTGCAATGT 59.496 43.478 8.35 0.00 0.00 2.71
1759 2004 4.879545 AGTCAAGTTTAGACCTCGCAAAAA 59.120 37.500 0.00 0.00 36.68 1.94
1760 2005 4.448210 AGTCAAGTTTAGACCTCGCAAAA 58.552 39.130 0.00 0.00 36.68 2.44
1761 2006 4.067972 AGTCAAGTTTAGACCTCGCAAA 57.932 40.909 0.00 0.00 36.68 3.68
1762 2007 3.746045 AGTCAAGTTTAGACCTCGCAA 57.254 42.857 0.00 0.00 36.68 4.85
1763 2008 4.859304 TTAGTCAAGTTTAGACCTCGCA 57.141 40.909 0.00 0.00 36.68 5.10
1764 2009 5.867716 TGAATTAGTCAAGTTTAGACCTCGC 59.132 40.000 0.00 0.00 36.68 5.03
1765 2010 7.884816 TTGAATTAGTCAAGTTTAGACCTCG 57.115 36.000 0.00 0.00 41.47 4.63
1838 2195 8.504005 CGAAAGTGTAGTGATTTAAGTCCAATT 58.496 33.333 0.00 0.00 0.00 2.32
1840 2197 6.987992 ACGAAAGTGTAGTGATTTAAGTCCAA 59.012 34.615 0.00 0.00 46.97 3.53
1901 2262 4.876107 ACTCTGGCCACTATTTTGTATTCG 59.124 41.667 0.00 0.00 0.00 3.34
1905 2266 4.759693 CACAACTCTGGCCACTATTTTGTA 59.240 41.667 0.00 0.00 0.00 2.41
2011 2372 1.558167 TTCCCGTCATGGCAGGCTTA 61.558 55.000 0.00 0.00 35.87 3.09
2043 2421 4.202161 CGGAGGGAGTACTACTAGACGTTA 60.202 50.000 4.77 0.00 0.00 3.18
2046 2424 2.102252 ACGGAGGGAGTACTACTAGACG 59.898 54.545 4.77 7.64 0.00 4.18
2052 2430 1.012841 CGTGACGGAGGGAGTACTAC 58.987 60.000 0.00 0.00 0.00 2.73
2053 2431 3.465990 CGTGACGGAGGGAGTACTA 57.534 57.895 0.00 0.00 0.00 1.82
2065 2443 2.372690 CGCCTTCTGAACCGTGACG 61.373 63.158 0.00 0.00 0.00 4.35
2066 2444 2.668280 GCGCCTTCTGAACCGTGAC 61.668 63.158 0.00 0.00 0.00 3.67
2069 2447 3.802418 AACGCGCCTTCTGAACCGT 62.802 57.895 5.73 2.56 0.00 4.83
2071 2449 1.082104 CAAACGCGCCTTCTGAACC 60.082 57.895 5.73 0.00 0.00 3.62
2072 2450 1.082104 CCAAACGCGCCTTCTGAAC 60.082 57.895 5.73 0.00 0.00 3.18
2073 2451 0.816018 TTCCAAACGCGCCTTCTGAA 60.816 50.000 5.73 2.64 0.00 3.02
2074 2452 0.816018 TTTCCAAACGCGCCTTCTGA 60.816 50.000 5.73 0.00 0.00 3.27
2075 2453 0.240945 ATTTCCAAACGCGCCTTCTG 59.759 50.000 5.73 0.00 0.00 3.02
2077 2455 1.068541 AGAATTTCCAAACGCGCCTTC 60.069 47.619 5.73 0.00 0.00 3.46
2080 2458 0.793104 CGAGAATTTCCAAACGCGCC 60.793 55.000 5.73 0.00 0.00 6.53
2081 2459 0.793104 CCGAGAATTTCCAAACGCGC 60.793 55.000 5.73 0.00 0.00 6.86
2082 2460 0.793861 TCCGAGAATTTCCAAACGCG 59.206 50.000 3.53 3.53 0.00 6.01
2083 2461 2.581637 GTTCCGAGAATTTCCAAACGC 58.418 47.619 0.00 0.00 0.00 4.84
2084 2462 2.812011 AGGTTCCGAGAATTTCCAAACG 59.188 45.455 0.00 0.00 0.00 3.60
2085 2463 5.243207 TCTAGGTTCCGAGAATTTCCAAAC 58.757 41.667 0.00 0.00 0.00 2.93
2086 2464 5.492855 TCTAGGTTCCGAGAATTTCCAAA 57.507 39.130 0.00 0.00 0.00 3.28
2087 2465 5.428253 CATCTAGGTTCCGAGAATTTCCAA 58.572 41.667 5.83 0.00 0.00 3.53
2088 2466 4.141711 CCATCTAGGTTCCGAGAATTTCCA 60.142 45.833 5.83 0.00 0.00 3.53
2089 2467 4.381411 CCATCTAGGTTCCGAGAATTTCC 58.619 47.826 5.83 0.00 0.00 3.13
2103 2481 8.195165 TCTCAACCAATAGATAACCATCTAGG 57.805 38.462 1.32 0.97 44.94 3.02
2104 2482 9.083422 TCTCTCAACCAATAGATAACCATCTAG 57.917 37.037 1.32 0.00 44.94 2.43
2105 2483 9.607333 ATCTCTCAACCAATAGATAACCATCTA 57.393 33.333 0.00 0.00 45.62 1.98
2106 2484 7.921041 TCTCTCAACCAATAGATAACCATCT 57.079 36.000 0.00 0.00 44.04 2.90
2107 2485 7.605691 CCATCTCTCAACCAATAGATAACCATC 59.394 40.741 0.00 0.00 0.00 3.51
2108 2486 7.456725 CCATCTCTCAACCAATAGATAACCAT 58.543 38.462 0.00 0.00 0.00 3.55
2109 2487 6.183361 CCCATCTCTCAACCAATAGATAACCA 60.183 42.308 0.00 0.00 0.00 3.67
2110 2488 6.183361 ACCCATCTCTCAACCAATAGATAACC 60.183 42.308 0.00 0.00 0.00 2.85
2111 2489 6.831976 ACCCATCTCTCAACCAATAGATAAC 58.168 40.000 0.00 0.00 0.00 1.89
2112 2490 7.451731 AACCCATCTCTCAACCAATAGATAA 57.548 36.000 0.00 0.00 0.00 1.75
2113 2491 8.561536 TTAACCCATCTCTCAACCAATAGATA 57.438 34.615 0.00 0.00 0.00 1.98
2114 2492 5.983333 AACCCATCTCTCAACCAATAGAT 57.017 39.130 0.00 0.00 0.00 1.98
2115 2493 6.884472 TTAACCCATCTCTCAACCAATAGA 57.116 37.500 0.00 0.00 0.00 1.98
2116 2494 7.938140 TTTTAACCCATCTCTCAACCAATAG 57.062 36.000 0.00 0.00 0.00 1.73
2138 2516 7.818446 TGCATGCATAGTGTGAATGTTATTTTT 59.182 29.630 18.46 0.00 44.56 1.94
2139 2517 7.321908 TGCATGCATAGTGTGAATGTTATTTT 58.678 30.769 18.46 0.00 44.56 1.82
2140 2518 6.865411 TGCATGCATAGTGTGAATGTTATTT 58.135 32.000 18.46 0.00 44.56 1.40
2141 2519 6.453926 TGCATGCATAGTGTGAATGTTATT 57.546 33.333 18.46 0.00 44.56 1.40
2142 2520 6.644248 ATGCATGCATAGTGTGAATGTTAT 57.356 33.333 31.35 2.06 44.56 1.89
2143 2521 7.748691 ATATGCATGCATAGTGTGAATGTTA 57.251 32.000 36.05 17.62 44.56 2.41
2144 2522 4.994907 ATGCATGCATAGTGTGAATGTT 57.005 36.364 31.35 3.30 44.56 2.71
2145 2523 7.748691 TTATATGCATGCATAGTGTGAATGT 57.251 32.000 36.05 22.57 44.56 2.71
2146 2524 9.465985 TTTTTATATGCATGCATAGTGTGAATG 57.534 29.630 36.05 3.46 45.38 2.67
2150 2528 9.345517 GGTATTTTTATATGCATGCATAGTGTG 57.654 33.333 36.05 0.00 41.51 3.82
2151 2529 9.300681 AGGTATTTTTATATGCATGCATAGTGT 57.699 29.630 36.05 25.58 41.51 3.55
2152 2530 9.778993 GAGGTATTTTTATATGCATGCATAGTG 57.221 33.333 36.05 0.00 41.51 2.74
2153 2531 8.960591 GGAGGTATTTTTATATGCATGCATAGT 58.039 33.333 36.05 27.04 41.51 2.12
2154 2532 9.182214 AGGAGGTATTTTTATATGCATGCATAG 57.818 33.333 36.05 0.00 41.51 2.23
2155 2533 9.532494 AAGGAGGTATTTTTATATGCATGCATA 57.468 29.630 35.71 35.71 42.28 3.14
2156 2534 8.426569 AAGGAGGTATTTTTATATGCATGCAT 57.573 30.769 33.92 33.92 40.19 3.96
2157 2535 7.838079 AAGGAGGTATTTTTATATGCATGCA 57.162 32.000 25.04 25.04 0.00 3.96
2158 2536 8.359642 TCAAAGGAGGTATTTTTATATGCATGC 58.640 33.333 11.82 11.82 0.00 4.06
2161 2539 9.077885 GGATCAAAGGAGGTATTTTTATATGCA 57.922 33.333 0.00 0.00 0.00 3.96
2162 2540 9.077885 TGGATCAAAGGAGGTATTTTTATATGC 57.922 33.333 0.00 0.00 0.00 3.14
2176 2554 7.041167 TGCGACAATTAATATGGATCAAAGGAG 60.041 37.037 0.00 0.00 0.00 3.69
2177 2555 6.770303 TGCGACAATTAATATGGATCAAAGGA 59.230 34.615 0.00 0.00 0.00 3.36
2182 2560 7.566760 AAGTTGCGACAATTAATATGGATCA 57.433 32.000 6.90 0.00 0.00 2.92
2220 2598 8.527810 ACGGATTTAGGATAATTTCAGCAAAAA 58.472 29.630 0.00 0.00 0.00 1.94
2221 2599 7.973388 CACGGATTTAGGATAATTTCAGCAAAA 59.027 33.333 0.00 0.00 0.00 2.44
2222 2600 7.416213 CCACGGATTTAGGATAATTTCAGCAAA 60.416 37.037 0.00 0.00 0.00 3.68
2223 2601 6.039270 CCACGGATTTAGGATAATTTCAGCAA 59.961 38.462 0.00 0.00 0.00 3.91
2224 2602 5.530915 CCACGGATTTAGGATAATTTCAGCA 59.469 40.000 0.00 0.00 0.00 4.41
2225 2603 5.562890 GCCACGGATTTAGGATAATTTCAGC 60.563 44.000 0.00 0.00 0.00 4.26
2226 2604 5.530915 TGCCACGGATTTAGGATAATTTCAG 59.469 40.000 0.00 0.00 0.00 3.02
2227 2605 5.441500 TGCCACGGATTTAGGATAATTTCA 58.558 37.500 0.00 0.00 0.00 2.69
2228 2606 6.039382 AGTTGCCACGGATTTAGGATAATTTC 59.961 38.462 0.00 0.00 0.00 2.17
2229 2607 5.891551 AGTTGCCACGGATTTAGGATAATTT 59.108 36.000 0.00 0.00 0.00 1.82
2230 2608 5.445964 AGTTGCCACGGATTTAGGATAATT 58.554 37.500 0.00 0.00 0.00 1.40
2231 2609 5.048846 AGTTGCCACGGATTTAGGATAAT 57.951 39.130 0.00 0.00 0.00 1.28
2232 2610 4.497291 AGTTGCCACGGATTTAGGATAA 57.503 40.909 0.00 0.00 0.00 1.75
2233 2611 5.617528 TTAGTTGCCACGGATTTAGGATA 57.382 39.130 0.00 0.00 0.00 2.59
2234 2612 4.497291 TTAGTTGCCACGGATTTAGGAT 57.503 40.909 0.00 0.00 0.00 3.24
2235 2613 3.985019 TTAGTTGCCACGGATTTAGGA 57.015 42.857 0.00 0.00 0.00 2.94
2236 2614 7.383687 TCTATATTAGTTGCCACGGATTTAGG 58.616 38.462 0.00 0.00 0.00 2.69
2237 2615 9.088512 GATCTATATTAGTTGCCACGGATTTAG 57.911 37.037 0.00 0.00 0.00 1.85
2238 2616 7.758076 CGATCTATATTAGTTGCCACGGATTTA 59.242 37.037 0.00 0.00 0.00 1.40
2239 2617 6.590292 CGATCTATATTAGTTGCCACGGATTT 59.410 38.462 0.00 0.00 0.00 2.17
2240 2618 6.100004 CGATCTATATTAGTTGCCACGGATT 58.900 40.000 0.00 0.00 0.00 3.01
2241 2619 5.394224 CCGATCTATATTAGTTGCCACGGAT 60.394 44.000 0.00 0.00 38.09 4.18
2242 2620 4.082408 CCGATCTATATTAGTTGCCACGGA 60.082 45.833 0.00 0.00 38.09 4.69
2243 2621 4.082408 TCCGATCTATATTAGTTGCCACGG 60.082 45.833 0.00 0.00 37.37 4.94
2244 2622 5.055642 TCCGATCTATATTAGTTGCCACG 57.944 43.478 0.00 0.00 0.00 4.94
2245 2623 5.869888 CCTTCCGATCTATATTAGTTGCCAC 59.130 44.000 0.00 0.00 0.00 5.01
2246 2624 5.778241 TCCTTCCGATCTATATTAGTTGCCA 59.222 40.000 0.00 0.00 0.00 4.92
2247 2625 6.071278 ACTCCTTCCGATCTATATTAGTTGCC 60.071 42.308 0.00 0.00 0.00 4.52
2248 2626 6.926313 ACTCCTTCCGATCTATATTAGTTGC 58.074 40.000 0.00 0.00 0.00 4.17
2249 2627 8.460428 GGTACTCCTTCCGATCTATATTAGTTG 58.540 40.741 0.00 0.00 0.00 3.16
2250 2628 8.168725 TGGTACTCCTTCCGATCTATATTAGTT 58.831 37.037 0.00 0.00 34.23 2.24
2251 2629 7.696981 TGGTACTCCTTCCGATCTATATTAGT 58.303 38.462 0.00 0.00 34.23 2.24
2252 2630 8.047911 TCTGGTACTCCTTCCGATCTATATTAG 58.952 40.741 0.00 0.00 34.23 1.73
2253 2631 7.925622 TCTGGTACTCCTTCCGATCTATATTA 58.074 38.462 0.00 0.00 34.23 0.98
2254 2632 6.791371 TCTGGTACTCCTTCCGATCTATATT 58.209 40.000 0.00 0.00 34.23 1.28
2255 2633 6.390048 TCTGGTACTCCTTCCGATCTATAT 57.610 41.667 0.00 0.00 34.23 0.86
2256 2634 5.837770 TCTGGTACTCCTTCCGATCTATA 57.162 43.478 0.00 0.00 34.23 1.31
2257 2635 4.726035 TCTGGTACTCCTTCCGATCTAT 57.274 45.455 0.00 0.00 34.23 1.98
2258 2636 4.515028 TTCTGGTACTCCTTCCGATCTA 57.485 45.455 0.00 0.00 34.23 1.98
2259 2637 3.383698 TTCTGGTACTCCTTCCGATCT 57.616 47.619 0.00 0.00 34.23 2.75
2260 2638 4.623002 GAATTCTGGTACTCCTTCCGATC 58.377 47.826 0.00 0.00 34.23 3.69
2261 2639 3.068307 CGAATTCTGGTACTCCTTCCGAT 59.932 47.826 3.52 0.00 34.23 4.18
2262 2640 2.426024 CGAATTCTGGTACTCCTTCCGA 59.574 50.000 3.52 0.00 34.23 4.55
2263 2641 2.165845 ACGAATTCTGGTACTCCTTCCG 59.834 50.000 3.52 0.00 34.23 4.30
2264 2642 3.889520 ACGAATTCTGGTACTCCTTCC 57.110 47.619 3.52 0.00 34.23 3.46
2265 2643 4.081586 AGGAACGAATTCTGGTACTCCTTC 60.082 45.833 3.52 0.00 34.98 3.46
2266 2644 3.838903 AGGAACGAATTCTGGTACTCCTT 59.161 43.478 3.52 0.00 34.98 3.36
2267 2645 3.195825 CAGGAACGAATTCTGGTACTCCT 59.804 47.826 3.52 2.91 34.98 3.69
2268 2646 3.522553 CAGGAACGAATTCTGGTACTCC 58.477 50.000 3.52 0.69 34.98 3.85
2271 2649 3.194968 TCTCCAGGAACGAATTCTGGTAC 59.805 47.826 16.49 0.92 35.89 3.34
2281 2659 3.055819 CCTTCAATTCTCTCCAGGAACGA 60.056 47.826 0.00 0.00 0.00 3.85
2282 2660 3.265791 CCTTCAATTCTCTCCAGGAACG 58.734 50.000 0.00 0.00 0.00 3.95
2291 2669 4.410099 TGTTGATTGCCCTTCAATTCTCT 58.590 39.130 0.00 0.00 44.95 3.10
2294 2672 5.075858 TCATGTTGATTGCCCTTCAATTC 57.924 39.130 0.00 0.00 44.95 2.17
2302 2680 5.163530 TGTGATATGTTCATGTTGATTGCCC 60.164 40.000 0.00 0.00 36.54 5.36
2304 2682 6.807720 TGTTGTGATATGTTCATGTTGATTGC 59.192 34.615 0.00 0.00 36.54 3.56
2306 2684 7.315142 GGTGTTGTGATATGTTCATGTTGATT 58.685 34.615 0.00 0.00 36.54 2.57
2307 2685 6.127647 GGGTGTTGTGATATGTTCATGTTGAT 60.128 38.462 0.00 0.00 36.54 2.57
2322 2700 0.037590 GCATGGTAGGGGTGTTGTGA 59.962 55.000 0.00 0.00 0.00 3.58
2329 2707 3.415186 CCAGTGCATGGTAGGGGT 58.585 61.111 0.00 0.00 44.91 4.95
2337 2715 4.051167 TCCCCAGCCCAGTGCATG 62.051 66.667 0.00 0.00 44.83 4.06
2338 2716 3.736224 CTCCCCAGCCCAGTGCAT 61.736 66.667 0.00 0.00 44.83 3.96
2339 2717 4.980592 TCTCCCCAGCCCAGTGCA 62.981 66.667 0.00 0.00 44.83 4.57
2340 2718 3.650950 TTCTCCCCAGCCCAGTGC 61.651 66.667 0.00 0.00 41.71 4.40
2375 2753 9.533831 TCACTCCAGCTCATATACATATTCTAA 57.466 33.333 0.00 0.00 0.00 2.10
2393 2771 1.406069 GCAGGTGGTATGTCACTCCAG 60.406 57.143 0.00 0.00 37.75 3.86
2411 2789 6.889177 TGAGTTAGAAATATTTGGACATGGCA 59.111 34.615 5.17 0.00 0.00 4.92
2412 2790 7.333528 TGAGTTAGAAATATTTGGACATGGC 57.666 36.000 5.17 0.00 0.00 4.40
2449 2827 9.082313 ACTGTTTCCAAAATCTGATCATAAGTT 57.918 29.630 0.00 0.00 0.00 2.66
2450 2828 8.641498 ACTGTTTCCAAAATCTGATCATAAGT 57.359 30.769 0.00 0.00 0.00 2.24
2462 2840 8.106247 ACGTATCAATGTACTGTTTCCAAAAT 57.894 30.769 0.00 0.00 0.00 1.82
2463 2841 7.499321 ACGTATCAATGTACTGTTTCCAAAA 57.501 32.000 0.00 0.00 0.00 2.44
2469 2847 9.865321 ACATACTTACGTATCAATGTACTGTTT 57.135 29.630 12.75 0.00 34.14 2.83
2526 2921 3.266636 TGAACCGCGATCAATACATGTT 58.733 40.909 8.23 0.00 0.00 2.71
2528 2923 3.942539 TTGAACCGCGATCAATACATG 57.057 42.857 19.08 0.00 32.10 3.21
2530 2925 5.233476 GTCTAATTGAACCGCGATCAATACA 59.767 40.000 28.31 21.06 44.53 2.29
2539 2934 3.546670 GTCTACTGTCTAATTGAACCGCG 59.453 47.826 0.00 0.00 0.00 6.46
2545 2940 7.283807 TGGCTATTACGTCTACTGTCTAATTGA 59.716 37.037 0.00 0.00 0.00 2.57
2548 2943 7.762588 ATGGCTATTACGTCTACTGTCTAAT 57.237 36.000 0.00 0.00 0.00 1.73
2549 2944 7.067859 ACAATGGCTATTACGTCTACTGTCTAA 59.932 37.037 0.00 0.00 0.00 2.10
2587 2982 0.968405 CCCCTTTTGTGGACACCATG 59.032 55.000 0.00 0.00 35.28 3.66
2589 2984 0.856982 ATCCCCTTTTGTGGACACCA 59.143 50.000 0.00 0.00 32.36 4.17
2605 3010 3.244976 CAAAGGTGCACGAAATGAATCC 58.755 45.455 11.45 0.00 0.00 3.01
2962 3367 1.214325 CGTCCCATGCACGTGTAGA 59.786 57.895 18.38 3.54 32.41 2.59
2964 3369 1.817911 TTCCGTCCCATGCACGTGTA 61.818 55.000 18.38 14.09 35.39 2.90
3085 3492 2.453983 TTTTAGGTCAACCGGGTACG 57.546 50.000 6.32 0.00 42.08 3.67
3106 3513 0.881118 GGCACGTGTGGAATTGTCAT 59.119 50.000 18.38 0.00 0.00 3.06
3107 3514 2.326222 GGCACGTGTGGAATTGTCA 58.674 52.632 18.38 0.00 0.00 3.58
3125 3551 3.179795 CGTACAGACAAAACAGTGACTCG 59.820 47.826 0.00 0.00 0.00 4.18
3141 3567 3.123804 ACAGTCTTTGAAGTGCGTACAG 58.876 45.455 6.38 0.00 0.00 2.74
3147 3573 6.539649 TGTATTGTACAGTCTTTGAAGTGC 57.460 37.500 0.00 0.00 34.06 4.40
3149 3575 8.732746 AACTTGTATTGTACAGTCTTTGAAGT 57.267 30.769 0.00 0.00 40.24 3.01
3160 3586 7.445707 TGGCATTCTGTTAACTTGTATTGTACA 59.554 33.333 7.22 0.00 36.79 2.90
3164 3590 8.761575 AAATGGCATTCTGTTAACTTGTATTG 57.238 30.769 14.04 0.00 0.00 1.90
3166 3592 7.754924 CGAAAATGGCATTCTGTTAACTTGTAT 59.245 33.333 14.04 0.00 0.00 2.29
3167 3593 7.081349 CGAAAATGGCATTCTGTTAACTTGTA 58.919 34.615 14.04 0.00 0.00 2.41
3211 3699 1.654105 GCATGTGTACGTAGCACTGTC 59.346 52.381 20.96 11.09 37.70 3.51
3215 3703 3.546670 GTCTTAGCATGTGTACGTAGCAC 59.453 47.826 16.49 16.49 37.37 4.40
3216 3704 3.442625 AGTCTTAGCATGTGTACGTAGCA 59.557 43.478 0.00 0.00 0.00 3.49
3217 3705 4.030134 AGTCTTAGCATGTGTACGTAGC 57.970 45.455 0.00 0.00 0.00 3.58
3218 3706 6.946229 AAAAGTCTTAGCATGTGTACGTAG 57.054 37.500 0.00 0.00 0.00 3.51
3219 3707 7.369607 TGTAAAAGTCTTAGCATGTGTACGTA 58.630 34.615 0.00 0.00 0.00 3.57
3228 3716 8.554528 CATGATCGAATGTAAAAGTCTTAGCAT 58.445 33.333 0.00 0.00 0.00 3.79
3230 3718 8.131455 TCATGATCGAATGTAAAAGTCTTAGC 57.869 34.615 0.00 0.00 0.00 3.09
3233 3721 9.778993 CAATTCATGATCGAATGTAAAAGTCTT 57.221 29.630 0.00 0.00 35.77 3.01
3234 3722 8.950210 ACAATTCATGATCGAATGTAAAAGTCT 58.050 29.630 0.00 0.00 35.77 3.24
3235 3723 9.559958 AACAATTCATGATCGAATGTAAAAGTC 57.440 29.630 0.00 0.00 35.77 3.01
3236 3724 9.912634 AAACAATTCATGATCGAATGTAAAAGT 57.087 25.926 0.00 0.00 35.77 2.66
3238 3726 9.689976 ACAAACAATTCATGATCGAATGTAAAA 57.310 25.926 0.00 0.00 35.77 1.52
3239 3727 9.340695 GACAAACAATTCATGATCGAATGTAAA 57.659 29.630 0.00 0.00 35.77 2.01
3240 3728 8.510505 TGACAAACAATTCATGATCGAATGTAA 58.489 29.630 0.00 0.00 35.77 2.41
3241 3729 7.962373 GTGACAAACAATTCATGATCGAATGTA 59.038 33.333 0.00 0.00 35.77 2.29
3242 3730 6.803320 GTGACAAACAATTCATGATCGAATGT 59.197 34.615 0.00 0.00 35.77 2.71
3243 3731 7.025365 AGTGACAAACAATTCATGATCGAATG 58.975 34.615 0.00 0.00 35.77 2.67
3244 3732 7.149569 AGTGACAAACAATTCATGATCGAAT 57.850 32.000 0.00 0.00 37.20 3.34
3245 3733 6.558771 AGTGACAAACAATTCATGATCGAA 57.441 33.333 0.00 0.00 0.00 3.71
3246 3734 7.665561 TTAGTGACAAACAATTCATGATCGA 57.334 32.000 0.00 0.00 0.00 3.59
3247 3735 7.006476 CGTTTAGTGACAAACAATTCATGATCG 59.994 37.037 0.00 0.00 38.12 3.69
3248 3736 7.803189 ACGTTTAGTGACAAACAATTCATGATC 59.197 33.333 0.00 0.00 38.12 2.92
3249 3737 7.648142 ACGTTTAGTGACAAACAATTCATGAT 58.352 30.769 0.00 0.00 38.12 2.45
3250 3738 7.022055 ACGTTTAGTGACAAACAATTCATGA 57.978 32.000 0.00 0.00 38.12 3.07
3251 3739 8.067784 AGTACGTTTAGTGACAAACAATTCATG 58.932 33.333 0.00 0.00 38.12 3.07
3252 3740 8.149973 AGTACGTTTAGTGACAAACAATTCAT 57.850 30.769 0.00 0.00 38.12 2.57
3253 3741 7.542534 AGTACGTTTAGTGACAAACAATTCA 57.457 32.000 0.00 0.00 38.12 2.57
3258 3746 8.649841 GCATATAAGTACGTTTAGTGACAAACA 58.350 33.333 0.00 0.00 38.12 2.83
3259 3747 8.649841 TGCATATAAGTACGTTTAGTGACAAAC 58.350 33.333 0.00 0.00 35.49 2.93
3260 3748 8.760103 TGCATATAAGTACGTTTAGTGACAAA 57.240 30.769 0.00 0.00 0.00 2.83
3261 3749 8.813282 CATGCATATAAGTACGTTTAGTGACAA 58.187 33.333 0.00 0.00 0.00 3.18
3263 3751 8.266682 CACATGCATATAAGTACGTTTAGTGAC 58.733 37.037 0.00 0.00 0.00 3.67
3290 4218 5.063944 CCGACACCTCTCTGAAATACAATTG 59.936 44.000 3.24 3.24 0.00 2.32
3291 4219 5.046591 TCCGACACCTCTCTGAAATACAATT 60.047 40.000 0.00 0.00 0.00 2.32
3292 4220 4.466370 TCCGACACCTCTCTGAAATACAAT 59.534 41.667 0.00 0.00 0.00 2.71
3293 4221 3.830178 TCCGACACCTCTCTGAAATACAA 59.170 43.478 0.00 0.00 0.00 2.41
3295 4223 3.181485 CCTCCGACACCTCTCTGAAATAC 60.181 52.174 0.00 0.00 0.00 1.89
3296 4224 3.024547 CCTCCGACACCTCTCTGAAATA 58.975 50.000 0.00 0.00 0.00 1.40
3297 4225 1.827969 CCTCCGACACCTCTCTGAAAT 59.172 52.381 0.00 0.00 0.00 2.17
3300 4228 0.034960 CTCCTCCGACACCTCTCTGA 60.035 60.000 0.00 0.00 0.00 3.27
3660 4590 3.903876 GCACATGCACGATAACTGG 57.096 52.632 0.00 0.00 41.59 4.00
3693 4623 2.307363 CCGAACGGCACATGGATAC 58.693 57.895 0.00 0.00 0.00 2.24
3791 4727 1.365633 CTCTCATGCCGGCTAGTCC 59.634 63.158 29.70 0.00 0.00 3.85
3796 4732 4.218578 CGAGCTCTCATGCCGGCT 62.219 66.667 29.70 10.60 37.77 5.52
3840 4785 1.082366 GCGTATTTTATGGCCGGCG 60.082 57.895 22.54 0.00 0.00 6.46
3909 5044 2.159282 AGGGATGTACGTAGTTGCTTCG 60.159 50.000 0.00 0.00 37.78 3.79
3925 5060 3.070734 GCATGAGTGTATGTCTGAGGGAT 59.929 47.826 0.00 0.00 0.00 3.85
3961 5096 0.033366 CGTGGTGTGACTGTGATCCA 59.967 55.000 0.00 0.00 0.00 3.41
3970 5105 0.037697 TACATGGCTCGTGGTGTGAC 60.038 55.000 0.00 0.00 0.00 3.67
3971 5106 0.037697 GTACATGGCTCGTGGTGTGA 60.038 55.000 0.00 0.00 0.00 3.58
3972 5107 1.019278 GGTACATGGCTCGTGGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
3973 5108 1.295423 GGTACATGGCTCGTGGTGT 59.705 57.895 0.00 0.00 0.00 4.16
3974 5109 1.449601 GGGTACATGGCTCGTGGTG 60.450 63.158 0.00 0.00 0.00 4.17
3976 5111 1.024579 GTTGGGTACATGGCTCGTGG 61.025 60.000 0.00 0.00 0.00 4.94
3978 5113 0.398696 TTGTTGGGTACATGGCTCGT 59.601 50.000 0.00 0.00 36.44 4.18
3979 5114 0.802494 GTTGTTGGGTACATGGCTCG 59.198 55.000 0.00 0.00 36.44 5.03
3980 5115 1.904287 TGTTGTTGGGTACATGGCTC 58.096 50.000 0.00 0.00 36.44 4.70
3981 5116 2.158534 TCTTGTTGTTGGGTACATGGCT 60.159 45.455 0.00 0.00 36.44 4.75
3982 5117 2.228822 CTCTTGTTGTTGGGTACATGGC 59.771 50.000 0.00 0.00 36.44 4.40
3983 5118 2.228822 GCTCTTGTTGTTGGGTACATGG 59.771 50.000 0.00 0.00 36.44 3.66
3985 5120 2.151202 CGCTCTTGTTGTTGGGTACAT 58.849 47.619 0.00 0.00 36.44 2.29
3992 5128 1.401530 CATGTGCGCTCTTGTTGTTG 58.598 50.000 9.73 0.00 0.00 3.33
4057 5223 0.099968 CATGGAGCGTTCATGGCTTG 59.900 55.000 0.53 0.00 41.72 4.01
4058 5224 1.660560 GCATGGAGCGTTCATGGCTT 61.661 55.000 15.16 0.00 41.72 4.35
4076 5242 0.097674 CTAGCTTGTTGACGCCATGC 59.902 55.000 0.00 0.00 34.26 4.06
4077 5243 0.097674 GCTAGCTTGTTGACGCCATG 59.902 55.000 7.70 0.00 0.00 3.66
4078 5244 0.321564 TGCTAGCTTGTTGACGCCAT 60.322 50.000 17.23 0.00 0.00 4.40
4081 5247 1.133458 GCTGCTAGCTTGTTGACGC 59.867 57.895 17.23 2.16 38.45 5.19
4091 5257 0.736053 ACTCTCGTACAGCTGCTAGC 59.264 55.000 15.27 8.10 42.84 3.42
4092 5258 2.010497 TGACTCTCGTACAGCTGCTAG 58.990 52.381 15.27 6.25 0.00 3.42
4093 5259 1.738350 GTGACTCTCGTACAGCTGCTA 59.262 52.381 15.27 2.59 0.00 3.49
4094 5260 0.523966 GTGACTCTCGTACAGCTGCT 59.476 55.000 15.27 0.00 0.00 4.24
4095 5261 0.523966 AGTGACTCTCGTACAGCTGC 59.476 55.000 15.27 0.00 0.00 5.25
4096 5262 2.999507 AAGTGACTCTCGTACAGCTG 57.000 50.000 13.48 13.48 0.00 4.24
4097 5263 7.361371 GCATATATAAGTGACTCTCGTACAGCT 60.361 40.741 0.00 0.00 0.00 4.24
4098 5264 6.743627 GCATATATAAGTGACTCTCGTACAGC 59.256 42.308 0.00 0.00 0.00 4.40
4099 5265 8.035165 AGCATATATAAGTGACTCTCGTACAG 57.965 38.462 0.00 0.00 0.00 2.74
4100 5266 7.660208 TGAGCATATATAAGTGACTCTCGTACA 59.340 37.037 0.00 0.00 0.00 2.90
4101 5267 7.958567 GTGAGCATATATAAGTGACTCTCGTAC 59.041 40.741 0.00 0.00 0.00 3.67
4102 5268 7.878644 AGTGAGCATATATAAGTGACTCTCGTA 59.121 37.037 0.00 0.00 0.00 3.43
4103 5269 6.712998 AGTGAGCATATATAAGTGACTCTCGT 59.287 38.462 0.00 0.00 0.00 4.18
4104 5270 7.139896 AGTGAGCATATATAAGTGACTCTCG 57.860 40.000 0.00 0.00 0.00 4.04
4105 5271 9.226606 ACTAGTGAGCATATATAAGTGACTCTC 57.773 37.037 0.00 0.00 0.00 3.20
4106 5272 9.581289 AACTAGTGAGCATATATAAGTGACTCT 57.419 33.333 0.00 0.00 0.00 3.24
4111 5277 9.045223 TGCAAAACTAGTGAGCATATATAAGTG 57.955 33.333 11.70 0.00 0.00 3.16
4125 5291 6.426980 TGCTCAATATCTGCAAAACTAGTG 57.573 37.500 0.00 0.00 33.48 2.74
4126 5292 6.656693 AGTTGCTCAATATCTGCAAAACTAGT 59.343 34.615 10.25 0.00 46.22 2.57
4127 5293 7.081526 AGTTGCTCAATATCTGCAAAACTAG 57.918 36.000 10.25 0.00 46.22 2.57
4128 5294 6.654582 TGAGTTGCTCAATATCTGCAAAACTA 59.345 34.615 10.25 0.00 46.22 2.24
4129 5295 5.474532 TGAGTTGCTCAATATCTGCAAAACT 59.525 36.000 10.25 6.58 46.22 2.66
4132 5298 5.005740 ACTGAGTTGCTCAATATCTGCAAA 58.994 37.500 10.25 0.00 46.22 3.68
4133 5299 4.393990 CACTGAGTTGCTCAATATCTGCAA 59.606 41.667 0.37 0.00 40.18 4.08
4297 5519 1.586564 CTCGTCGAAGGTCATCGGC 60.587 63.158 0.00 0.00 43.67 5.54
4413 5635 5.062558 GCTGAAAGACGCGGTTAATTAGTTA 59.937 40.000 12.47 0.00 34.07 2.24
4416 5638 3.541516 CGCTGAAAGACGCGGTTAATTAG 60.542 47.826 12.47 1.37 45.17 1.73
4427 5649 7.998767 CAGATAAATTATACACGCTGAAAGACG 59.001 37.037 0.00 0.00 38.94 4.18
4433 5655 8.141268 TGTCATCAGATAAATTATACACGCTGA 58.859 33.333 0.00 0.00 35.84 4.26
4448 5670 7.935210 ACATGCATGAGTTATTGTCATCAGATA 59.065 33.333 32.75 0.00 32.06 1.98
4499 5722 3.064207 AGTTTAGCCACACGTACACATG 58.936 45.455 0.00 0.00 0.00 3.21
4529 5752 9.909644 ATATCATAAAGGACATACTACACGAAC 57.090 33.333 0.00 0.00 0.00 3.95
4530 5753 9.908152 CATATCATAAAGGACATACTACACGAA 57.092 33.333 0.00 0.00 0.00 3.85
4547 5773 6.495526 TCTCGATTGGGGTACACATATCATAA 59.504 38.462 0.00 0.00 0.00 1.90
4571 5797 6.908870 TGCATAGCATATCGTCCATTAATC 57.091 37.500 0.00 0.00 31.71 1.75
4597 5823 9.387257 CAAGATGCCAATATAATCAGCATACTA 57.613 33.333 0.00 0.00 43.86 1.82
4598 5824 7.886970 ACAAGATGCCAATATAATCAGCATACT 59.113 33.333 0.00 0.00 43.86 2.12
4599 5825 8.048534 ACAAGATGCCAATATAATCAGCATAC 57.951 34.615 0.00 0.00 43.86 2.39
4631 5857 7.686938 CGTCGGTTTTTAGAAAGAATGTGATAC 59.313 37.037 0.00 0.00 0.00 2.24
4638 5864 4.746611 ACGACGTCGGTTTTTAGAAAGAAT 59.253 37.500 37.89 11.58 44.95 2.40
4678 5905 2.417379 GGTGCTCGAGATTAGTTCAGCA 60.417 50.000 18.75 0.00 34.54 4.41
4679 5906 2.197577 GGTGCTCGAGATTAGTTCAGC 58.802 52.381 18.75 8.48 0.00 4.26
4713 5944 1.536496 GCATGCATGGAAAGCGCATAA 60.536 47.619 27.34 0.00 44.30 1.90
4893 6284 3.742385 TGAACAGATCTGTGATGTGCAA 58.258 40.909 28.52 6.11 44.13 4.08
4905 6296 7.621428 TTCATCCATTTCTCTTGAACAGATC 57.379 36.000 0.00 0.00 31.02 2.75
4918 6309 3.057033 AGTGCAGCTGTTTCATCCATTTC 60.057 43.478 16.64 0.00 0.00 2.17
4946 6338 2.261361 GCCGGCCAATGTTCCAAC 59.739 61.111 18.11 0.00 0.00 3.77
4974 6366 1.461127 GCGTGTCAGATCAGTTGGTTC 59.539 52.381 0.00 0.00 0.00 3.62
4984 6383 3.603532 AGATTGAACATGCGTGTCAGAT 58.396 40.909 12.96 6.38 37.67 2.90
4990 6389 5.088739 GGAAAGTTAGATTGAACATGCGTG 58.911 41.667 3.82 3.82 0.00 5.34
4992 6391 5.088739 GTGGAAAGTTAGATTGAACATGCG 58.911 41.667 0.00 0.00 0.00 4.73
5020 6421 3.123804 CCATGTGTGGCTAGTCGTTATC 58.876 50.000 0.00 0.00 39.01 1.75
5129 6535 0.109272 TTCTCACCGTCGATGAGCAC 60.109 55.000 12.07 0.00 42.84 4.40
5157 6563 1.874562 CTGAGCTTTGCTGTCAGCC 59.125 57.895 21.99 6.54 41.51 4.85
5185 6591 1.004918 GTCCTTGTCCCGACACCTG 60.005 63.158 0.00 0.00 41.67 4.00
5261 6670 1.676967 CTGCTCAGTGGCCTTTCCC 60.677 63.158 3.32 0.00 0.00 3.97
5268 6677 0.036577 ATGTCTGTCTGCTCAGTGGC 60.037 55.000 0.00 0.00 36.85 5.01
5327 6736 1.508088 CGGATTTGCTGCCCAACTC 59.492 57.895 0.00 0.00 33.65 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.