Multiple sequence alignment - TraesCS3A01G349800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G349800 chr3A 100.000 6172 0 0 1 6172 598560509 598554338 0.000000e+00 11398.0
1 TraesCS3A01G349800 chr3B 94.581 3082 107 19 1 3072 602361010 602357979 0.000000e+00 4711.0
2 TraesCS3A01G349800 chr3B 94.013 1069 48 8 4535 5589 602356875 602355809 0.000000e+00 1605.0
3 TraesCS3A01G349800 chr3B 96.330 763 22 4 3740 4502 602357629 602356873 0.000000e+00 1249.0
4 TraesCS3A01G349800 chr3B 93.484 353 16 4 3311 3662 602357980 602357634 9.170000e-143 518.0
5 TraesCS3A01G349800 chr3B 91.391 302 18 5 5592 5892 602353632 602353338 2.070000e-109 407.0
6 TraesCS3A01G349800 chr3B 87.727 220 21 6 5371 5589 602336379 602336165 1.030000e-62 252.0
7 TraesCS3A01G349800 chr3B 87.778 180 15 4 5998 6172 602332258 602332081 2.920000e-48 204.0
8 TraesCS3A01G349800 chr3B 87.135 171 15 4 6007 6172 602353331 602353163 2.940000e-43 187.0
9 TraesCS3A01G349800 chr3B 100.000 31 0 0 5559 5589 602353686 602353656 2.400000e-04 58.4
10 TraesCS3A01G349800 chr3D 93.557 2592 107 19 1 2580 455876422 455873879 0.000000e+00 3807.0
11 TraesCS3A01G349800 chr3D 95.624 1074 47 0 4516 5589 455872055 455870982 0.000000e+00 1724.0
12 TraesCS3A01G349800 chr3D 94.521 584 21 9 3941 4517 455872737 455872158 0.000000e+00 891.0
13 TraesCS3A01G349800 chr3D 87.740 677 33 13 3311 3960 455873472 455872819 0.000000e+00 745.0
14 TraesCS3A01G349800 chr3D 90.730 507 31 9 2582 3072 455873977 455873471 0.000000e+00 662.0
15 TraesCS3A01G349800 chr3D 96.708 243 7 1 3070 3312 511728154 511728395 2.680000e-108 403.0
16 TraesCS3A01G349800 chr3D 93.878 196 9 1 5702 5897 455870959 455870767 6.050000e-75 292.0
17 TraesCS3A01G349800 chr3D 85.946 185 18 3 5991 6172 455870745 455870566 2.270000e-44 191.0
18 TraesCS3A01G349800 chr2D 97.143 245 5 2 3068 3312 642827071 642827313 4.450000e-111 412.0
19 TraesCS3A01G349800 chr2D 87.692 65 6 2 5921 5983 97219668 97219732 2.390000e-09 75.0
20 TraesCS3A01G349800 chr4D 97.131 244 6 1 3071 3314 30506426 30506668 1.600000e-110 411.0
21 TraesCS3A01G349800 chr4D 87.143 70 2 6 5921 5986 320026989 320027055 8.580000e-09 73.1
22 TraesCS3A01G349800 chr7A 96.708 243 7 1 3070 3312 539850197 539850438 2.680000e-108 403.0
23 TraesCS3A01G349800 chr7A 95.565 248 9 2 3070 3317 276118716 276118471 4.480000e-106 396.0
24 TraesCS3A01G349800 chr6D 95.968 248 9 1 3071 3318 80054078 80054324 9.640000e-108 401.0
25 TraesCS3A01G349800 chr6D 96.327 245 8 1 3068 3312 227007759 227008002 9.640000e-108 401.0
26 TraesCS3A01G349800 chr5A 96.694 242 7 1 3071 3312 522073676 522073916 9.640000e-108 401.0
27 TraesCS3A01G349800 chr5A 87.500 64 6 2 5921 5982 227928585 227928522 8.580000e-09 73.1
28 TraesCS3A01G349800 chr5D 96.311 244 7 2 3069 3312 241278305 241278064 3.470000e-107 399.0
29 TraesCS3A01G349800 chr5D 87.500 64 6 2 5921 5982 60081996 60081933 8.580000e-09 73.1
30 TraesCS3A01G349800 chr5D 87.879 66 2 5 5921 5982 197147120 197147183 8.580000e-09 73.1
31 TraesCS3A01G349800 chr6A 87.879 66 6 1 5919 5982 562943390 562943455 6.630000e-10 76.8
32 TraesCS3A01G349800 chr1B 87.879 66 6 2 5919 5982 277425302 277425367 6.630000e-10 76.8
33 TraesCS3A01G349800 chr7D 87.879 66 2 5 5921 5982 103820599 103820536 8.580000e-09 73.1
34 TraesCS3A01G349800 chr1A 87.879 66 2 5 5921 5982 436259674 436259737 8.580000e-09 73.1
35 TraesCS3A01G349800 chr4B 100.000 31 0 0 1156 1186 646120945 646120915 2.400000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G349800 chr3A 598554338 598560509 6171 True 11398.000000 11398 100.000000 1 6172 1 chr3A.!!$R1 6171
1 TraesCS3A01G349800 chr3B 602353163 602361010 7847 True 1247.914286 4711 93.847714 1 6172 7 chr3B.!!$R2 6171
2 TraesCS3A01G349800 chr3B 602332081 602336379 4298 True 228.000000 252 87.752500 5371 6172 2 chr3B.!!$R1 801
3 TraesCS3A01G349800 chr3D 455870566 455876422 5856 True 1187.428571 3807 91.713714 1 6172 7 chr3D.!!$R1 6171

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.035056 GGTAACACAGCAGCATCCCT 60.035 55.0 0.00 0.0 0.00 4.20 F
905 913 0.401395 TGTCAACAACTCCCCTCCCT 60.401 55.0 0.00 0.0 0.00 4.20 F
2311 2335 0.696501 AAGGAATTGCTACCGTGGGT 59.303 50.0 0.00 0.0 40.16 4.51 F
3102 3144 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.0 4.18 5.6 42.35 6.13 F
3171 3213 0.167470 GCGGCGGGAGAAAAAGTTAC 59.833 55.0 9.78 0.0 0.00 2.50 F
4059 4229 0.040204 CAAACCCTTCCCAGGCTGAT 59.960 55.0 17.94 0.0 39.20 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2271 2295 1.153005 CTTCCCTGCTGAGATGCCC 60.153 63.158 0.00 0.00 0.00 5.36 R
2825 2851 1.402968 CGCAAACATGAGGCTGCTATT 59.597 47.619 0.00 0.00 32.52 1.73 R
3152 3194 0.167470 GTAACTTTTTCTCCCGCCGC 59.833 55.000 0.00 0.00 0.00 6.53 R
4031 4201 1.145119 GGGAAGGGTTTGAAGACCAGT 59.855 52.381 0.00 0.00 41.65 4.00 R
4747 5064 1.817099 CAGCTTAGGCCTGCGGAAG 60.817 63.158 17.99 12.38 39.73 3.46 R
5750 10422 0.107643 TTCATGGACTTGTGGCGTCA 59.892 50.000 0.00 0.00 33.11 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.110518 CGAGGAGGAAGTAGGAGCCC 61.111 65.000 0.00 0.00 0.00 5.19
315 316 0.035056 GGTAACACAGCAGCATCCCT 60.035 55.000 0.00 0.00 0.00 4.20
666 669 5.852282 AAAACCGATAAATGGAAGGATGG 57.148 39.130 0.00 0.00 0.00 3.51
897 901 1.609320 GCCTCTCCCTGTCAACAACTC 60.609 57.143 0.00 0.00 0.00 3.01
905 913 0.401395 TGTCAACAACTCCCCTCCCT 60.401 55.000 0.00 0.00 0.00 4.20
939 963 2.365635 CATCCCACGGTCTCCCCT 60.366 66.667 0.00 0.00 0.00 4.79
951 975 4.880426 TCCCCTCCGCTCATCCCC 62.880 72.222 0.00 0.00 0.00 4.81
952 976 4.888325 CCCCTCCGCTCATCCCCT 62.888 72.222 0.00 0.00 0.00 4.79
1437 1461 2.701780 CGTCGACCTCCAGTCCCTG 61.702 68.421 10.58 0.00 43.08 4.45
1609 1633 4.343323 CCATCGCCACCACCCACA 62.343 66.667 0.00 0.00 0.00 4.17
1701 1725 1.141881 CAAGCGCTACATCGGGAGT 59.858 57.895 12.05 0.00 0.00 3.85
1704 1728 1.329256 AGCGCTACATCGGGAGTATT 58.671 50.000 8.99 0.00 0.00 1.89
1773 1797 2.363680 CAGTGACGGATCCTTCTGCTAT 59.636 50.000 18.30 0.00 0.00 2.97
1812 1836 3.078153 TCTGCCCCATGGAGATATCTACT 59.922 47.826 15.22 0.00 0.00 2.57
2187 2211 1.598601 GGAGAGTTCTACTCCGTAGCG 59.401 57.143 3.33 0.00 46.18 4.26
2223 2247 2.417516 CAGGCCGATACAGGGACG 59.582 66.667 0.00 0.00 37.77 4.79
2286 2310 1.453379 CAAGGGCATCTCAGCAGGG 60.453 63.158 0.00 0.00 35.83 4.45
2311 2335 0.696501 AAGGAATTGCTACCGTGGGT 59.303 50.000 0.00 0.00 40.16 4.51
2519 2543 6.428771 TGTGCCTAATTTGTGGTTAGTTACTC 59.571 38.462 0.00 0.00 0.00 2.59
2553 2577 2.213499 CACGCATAGAATTGGGACCTC 58.787 52.381 0.00 0.00 34.00 3.85
2554 2578 1.837439 ACGCATAGAATTGGGACCTCA 59.163 47.619 0.00 0.00 34.00 3.86
2557 2581 3.209410 GCATAGAATTGGGACCTCAGTG 58.791 50.000 0.00 0.00 0.00 3.66
2577 2601 4.465632 TGGCACACGTTGTAGATAAGAT 57.534 40.909 0.00 0.00 0.00 2.40
2612 2636 3.006940 CTCTGTGCCTAATTTGCGGTTA 58.993 45.455 0.00 0.00 0.00 2.85
2613 2637 3.006940 TCTGTGCCTAATTTGCGGTTAG 58.993 45.455 0.00 0.00 0.00 2.34
2614 2638 2.747446 CTGTGCCTAATTTGCGGTTAGT 59.253 45.455 0.00 0.00 0.00 2.24
2615 2639 3.150767 TGTGCCTAATTTGCGGTTAGTT 58.849 40.909 0.00 0.00 0.00 2.24
2616 2640 4.325119 TGTGCCTAATTTGCGGTTAGTTA 58.675 39.130 0.00 0.00 0.00 2.24
2617 2641 4.154556 TGTGCCTAATTTGCGGTTAGTTAC 59.845 41.667 0.00 0.00 0.00 2.50
2618 2642 4.393990 GTGCCTAATTTGCGGTTAGTTACT 59.606 41.667 0.00 0.00 0.00 2.24
2619 2643 4.393680 TGCCTAATTTGCGGTTAGTTACTG 59.606 41.667 0.00 0.00 36.13 2.74
2620 2644 4.393990 GCCTAATTTGCGGTTAGTTACTGT 59.606 41.667 0.00 0.00 35.43 3.55
2621 2645 5.106436 GCCTAATTTGCGGTTAGTTACTGTT 60.106 40.000 0.00 0.00 35.43 3.16
2622 2646 6.092533 GCCTAATTTGCGGTTAGTTACTGTTA 59.907 38.462 0.00 0.00 35.43 2.41
2623 2647 7.361116 GCCTAATTTGCGGTTAGTTACTGTTAA 60.361 37.037 0.00 0.00 35.43 2.01
2624 2648 8.173130 CCTAATTTGCGGTTAGTTACTGTTAAG 58.827 37.037 0.00 0.00 35.43 1.85
2625 2649 7.500720 AATTTGCGGTTAGTTACTGTTAAGT 57.499 32.000 0.00 0.00 40.67 2.24
2636 2660 3.275617 ACTGTTAAGTGGTGAAGCACA 57.724 42.857 14.49 0.00 35.86 4.57
2731 2755 6.071391 TGGAATGAAGGAGCTTTGGTAATTTC 60.071 38.462 0.00 0.00 0.00 2.17
2732 2756 6.071391 GGAATGAAGGAGCTTTGGTAATTTCA 60.071 38.462 0.00 0.00 0.00 2.69
2760 2785 5.725551 TGAGGATACCATTTGTTATGGGT 57.274 39.130 8.53 0.00 43.32 4.51
2766 2792 3.502356 ACCATTTGTTATGGGTCCGTTT 58.498 40.909 8.53 0.00 43.32 3.60
2767 2793 3.257127 ACCATTTGTTATGGGTCCGTTTG 59.743 43.478 8.53 0.00 43.32 2.93
2768 2794 3.257127 CCATTTGTTATGGGTCCGTTTGT 59.743 43.478 0.00 0.00 35.58 2.83
2825 2851 0.250234 GGACTCAGCCTATGTGTGCA 59.750 55.000 0.00 0.00 41.69 4.57
2845 2871 1.019673 ATAGCAGCCTCATGTTTGCG 58.980 50.000 0.00 0.00 41.27 4.85
2897 2923 6.039270 TGCTTAGAGATAGTCTTGAGAGAAGC 59.961 42.308 0.00 0.00 36.64 3.86
2923 2949 6.530019 TCATGCTGTATAACTCTGTGAAGA 57.470 37.500 0.00 0.00 0.00 2.87
2980 3021 3.873952 GTGAAGAGTTTGAGTTGTGCTCT 59.126 43.478 0.00 0.00 44.41 4.09
3062 3104 7.365741 AGCAACAGATAATTGAACTTCAGTTG 58.634 34.615 9.24 10.23 38.56 3.16
3072 3114 6.861065 TTGAACTTCAGTTGGAACTCATAC 57.139 37.500 0.00 0.00 38.56 2.39
3073 3115 6.174720 TGAACTTCAGTTGGAACTCATACT 57.825 37.500 0.00 0.00 38.56 2.12
3074 3116 6.223852 TGAACTTCAGTTGGAACTCATACTC 58.776 40.000 0.00 0.00 38.56 2.59
3075 3117 5.153950 ACTTCAGTTGGAACTCATACTCC 57.846 43.478 0.00 0.00 37.08 3.85
3076 3118 4.020128 ACTTCAGTTGGAACTCATACTCCC 60.020 45.833 0.00 0.00 37.08 4.30
3077 3119 3.791320 TCAGTTGGAACTCATACTCCCT 58.209 45.455 0.00 0.00 37.08 4.20
3078 3120 3.769844 TCAGTTGGAACTCATACTCCCTC 59.230 47.826 0.00 0.00 37.08 4.30
3079 3121 3.108376 AGTTGGAACTCATACTCCCTCC 58.892 50.000 0.00 0.00 32.86 4.30
3080 3122 2.838202 GTTGGAACTCATACTCCCTCCA 59.162 50.000 0.00 0.00 0.00 3.86
3081 3123 3.421394 TGGAACTCATACTCCCTCCAT 57.579 47.619 0.00 0.00 0.00 3.41
3082 3124 3.736094 TGGAACTCATACTCCCTCCATT 58.264 45.455 0.00 0.00 0.00 3.16
3083 3125 3.711704 TGGAACTCATACTCCCTCCATTC 59.288 47.826 0.00 0.00 0.00 2.67
3084 3126 3.071747 GGAACTCATACTCCCTCCATTCC 59.928 52.174 0.00 0.00 0.00 3.01
3085 3127 3.421394 ACTCATACTCCCTCCATTCCA 57.579 47.619 0.00 0.00 0.00 3.53
3086 3128 3.736094 ACTCATACTCCCTCCATTCCAA 58.264 45.455 0.00 0.00 0.00 3.53
3087 3129 4.111577 ACTCATACTCCCTCCATTCCAAA 58.888 43.478 0.00 0.00 0.00 3.28
3088 3130 4.540099 ACTCATACTCCCTCCATTCCAAAA 59.460 41.667 0.00 0.00 0.00 2.44
3089 3131 5.194537 ACTCATACTCCCTCCATTCCAAAAT 59.805 40.000 0.00 0.00 0.00 1.82
3090 3132 6.389869 ACTCATACTCCCTCCATTCCAAAATA 59.610 38.462 0.00 0.00 0.00 1.40
3091 3133 7.074237 ACTCATACTCCCTCCATTCCAAAATAT 59.926 37.037 0.00 0.00 0.00 1.28
3092 3134 8.518720 TCATACTCCCTCCATTCCAAAATATA 57.481 34.615 0.00 0.00 0.00 0.86
3093 3135 8.605947 TCATACTCCCTCCATTCCAAAATATAG 58.394 37.037 0.00 0.00 0.00 1.31
3094 3136 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
3095 3137 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
3096 3138 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
3097 3139 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
3098 3140 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
3099 3141 3.568007 TCCATTCCAAAATATAGTGCGCC 59.432 43.478 4.18 0.00 0.00 6.53
3100 3142 3.305335 CCATTCCAAAATATAGTGCGCCC 60.305 47.826 4.18 0.00 0.00 6.13
3101 3143 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
3102 3144 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
3103 3145 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
3117 3159 4.771356 CGCGCTTTCCGAGGTCGA 62.771 66.667 5.56 0.00 43.02 4.20
3118 3160 2.431942 GCGCTTTCCGAGGTCGAA 60.432 61.111 0.00 0.00 43.02 3.71
3119 3161 2.727684 GCGCTTTCCGAGGTCGAAC 61.728 63.158 0.00 0.00 43.02 3.95
3120 3162 1.080705 CGCTTTCCGAGGTCGAACT 60.081 57.895 0.34 0.34 43.02 3.01
3121 3163 0.666577 CGCTTTCCGAGGTCGAACTT 60.667 55.000 3.47 0.00 43.02 2.66
3122 3164 1.509703 GCTTTCCGAGGTCGAACTTT 58.490 50.000 3.47 0.00 43.02 2.66
3123 3165 1.194772 GCTTTCCGAGGTCGAACTTTG 59.805 52.381 3.47 0.00 43.02 2.77
3124 3166 2.750948 CTTTCCGAGGTCGAACTTTGA 58.249 47.619 3.47 0.91 43.02 2.69
3125 3167 2.144482 TTCCGAGGTCGAACTTTGAC 57.856 50.000 3.47 0.86 43.02 3.18
3138 3180 8.142348 GTCGAACTTTGACCATAAATTTAACG 57.858 34.615 1.21 0.00 0.00 3.18
3139 3181 8.011106 GTCGAACTTTGACCATAAATTTAACGA 58.989 33.333 1.21 0.00 0.00 3.85
3140 3182 8.557864 TCGAACTTTGACCATAAATTTAACGAA 58.442 29.630 1.21 1.12 0.00 3.85
3141 3183 8.624028 CGAACTTTGACCATAAATTTAACGAAC 58.376 33.333 1.21 0.00 0.00 3.95
3142 3184 8.496872 AACTTTGACCATAAATTTAACGAACG 57.503 30.769 1.21 0.00 0.00 3.95
3143 3185 7.863666 ACTTTGACCATAAATTTAACGAACGA 58.136 30.769 1.21 0.00 0.00 3.85
3144 3186 8.013378 ACTTTGACCATAAATTTAACGAACGAG 58.987 33.333 1.21 0.01 0.00 4.18
3145 3187 7.655236 TTGACCATAAATTTAACGAACGAGA 57.345 32.000 1.21 0.00 0.00 4.04
3146 3188 7.052565 TGACCATAAATTTAACGAACGAGAC 57.947 36.000 1.21 0.00 0.00 3.36
3147 3189 6.091169 TGACCATAAATTTAACGAACGAGACC 59.909 38.462 1.21 0.00 0.00 3.85
3148 3190 5.062558 ACCATAAATTTAACGAACGAGACCG 59.937 40.000 1.21 0.00 42.50 4.79
3149 3191 5.289193 CCATAAATTTAACGAACGAGACCGA 59.711 40.000 1.21 0.00 39.50 4.69
3150 3192 6.019318 CCATAAATTTAACGAACGAGACCGAT 60.019 38.462 1.21 0.00 39.50 4.18
3151 3193 5.851047 AAATTTAACGAACGAGACCGATT 57.149 34.783 0.14 0.00 39.50 3.34
3152 3194 4.835199 ATTTAACGAACGAGACCGATTG 57.165 40.909 0.14 0.00 39.50 2.67
3153 3195 1.621107 TAACGAACGAGACCGATTGC 58.379 50.000 0.14 0.00 39.50 3.56
3154 3196 1.342082 AACGAACGAGACCGATTGCG 61.342 55.000 0.14 0.00 39.50 4.85
3164 3206 2.817834 CGATTGCGGCGGGAGAAA 60.818 61.111 9.78 0.00 0.00 2.52
3165 3207 2.395360 CGATTGCGGCGGGAGAAAA 61.395 57.895 9.78 0.00 0.00 2.29
3166 3208 1.880186 GATTGCGGCGGGAGAAAAA 59.120 52.632 9.78 0.00 0.00 1.94
3167 3209 0.179163 GATTGCGGCGGGAGAAAAAG 60.179 55.000 9.78 0.00 0.00 2.27
3168 3210 0.893727 ATTGCGGCGGGAGAAAAAGT 60.894 50.000 9.78 0.00 0.00 2.66
3169 3211 1.104577 TTGCGGCGGGAGAAAAAGTT 61.105 50.000 9.78 0.00 0.00 2.66
3170 3212 0.250381 TGCGGCGGGAGAAAAAGTTA 60.250 50.000 9.78 0.00 0.00 2.24
3171 3213 0.167470 GCGGCGGGAGAAAAAGTTAC 59.833 55.000 9.78 0.00 0.00 2.50
3172 3214 1.515081 CGGCGGGAGAAAAAGTTACA 58.485 50.000 0.00 0.00 0.00 2.41
3173 3215 2.081462 CGGCGGGAGAAAAAGTTACAT 58.919 47.619 0.00 0.00 0.00 2.29
3174 3216 3.264104 CGGCGGGAGAAAAAGTTACATA 58.736 45.455 0.00 0.00 0.00 2.29
3175 3217 3.685756 CGGCGGGAGAAAAAGTTACATAA 59.314 43.478 0.00 0.00 0.00 1.90
3176 3218 4.334481 CGGCGGGAGAAAAAGTTACATAAT 59.666 41.667 0.00 0.00 0.00 1.28
3177 3219 5.163693 CGGCGGGAGAAAAAGTTACATAATT 60.164 40.000 0.00 0.00 0.00 1.40
3178 3220 6.037391 CGGCGGGAGAAAAAGTTACATAATTA 59.963 38.462 0.00 0.00 0.00 1.40
3179 3221 7.414319 CGGCGGGAGAAAAAGTTACATAATTAA 60.414 37.037 0.00 0.00 0.00 1.40
3180 3222 8.245491 GGCGGGAGAAAAAGTTACATAATTAAA 58.755 33.333 0.00 0.00 0.00 1.52
3181 3223 9.628746 GCGGGAGAAAAAGTTACATAATTAAAA 57.371 29.630 0.00 0.00 0.00 1.52
3221 3263 8.268850 ACGAATTCACTGATATAACTTTTGCT 57.731 30.769 6.22 0.00 0.00 3.91
3222 3264 8.391106 ACGAATTCACTGATATAACTTTTGCTC 58.609 33.333 6.22 0.00 0.00 4.26
3223 3265 7.852945 CGAATTCACTGATATAACTTTTGCTCC 59.147 37.037 6.22 0.00 0.00 4.70
3224 3266 7.573968 ATTCACTGATATAACTTTTGCTCCC 57.426 36.000 0.00 0.00 0.00 4.30
3225 3267 5.116180 TCACTGATATAACTTTTGCTCCCG 58.884 41.667 0.00 0.00 0.00 5.14
3226 3268 5.105106 TCACTGATATAACTTTTGCTCCCGA 60.105 40.000 0.00 0.00 0.00 5.14
3227 3269 5.006746 CACTGATATAACTTTTGCTCCCGAC 59.993 44.000 0.00 0.00 0.00 4.79
3228 3270 4.116961 TGATATAACTTTTGCTCCCGACG 58.883 43.478 0.00 0.00 0.00 5.12
3229 3271 1.084289 ATAACTTTTGCTCCCGACGC 58.916 50.000 0.00 0.00 0.00 5.19
3230 3272 0.249953 TAACTTTTGCTCCCGACGCA 60.250 50.000 0.00 0.00 35.22 5.24
3231 3273 1.098712 AACTTTTGCTCCCGACGCAA 61.099 50.000 2.57 2.57 44.83 4.85
3232 3274 0.889186 ACTTTTGCTCCCGACGCAAT 60.889 50.000 6.77 0.00 45.67 3.56
3233 3275 0.179189 CTTTTGCTCCCGACGCAATC 60.179 55.000 6.77 0.00 45.67 2.67
3245 3287 2.334838 GACGCAATCGGTCTTGTTAGT 58.665 47.619 0.00 0.00 40.69 2.24
3246 3288 2.735134 GACGCAATCGGTCTTGTTAGTT 59.265 45.455 0.00 0.00 40.69 2.24
3247 3289 3.916761 ACGCAATCGGTCTTGTTAGTTA 58.083 40.909 0.00 0.00 40.69 2.24
3248 3290 4.309099 ACGCAATCGGTCTTGTTAGTTAA 58.691 39.130 0.00 0.00 40.69 2.01
3249 3291 4.751098 ACGCAATCGGTCTTGTTAGTTAAA 59.249 37.500 0.00 0.00 40.69 1.52
3250 3292 5.410439 ACGCAATCGGTCTTGTTAGTTAAAT 59.590 36.000 0.00 0.00 40.69 1.40
3251 3293 6.072893 ACGCAATCGGTCTTGTTAGTTAAATT 60.073 34.615 0.00 0.00 40.69 1.82
3252 3294 6.799925 CGCAATCGGTCTTGTTAGTTAAATTT 59.200 34.615 0.00 0.00 0.00 1.82
3253 3295 7.958567 CGCAATCGGTCTTGTTAGTTAAATTTA 59.041 33.333 0.00 0.00 0.00 1.40
3254 3296 9.058424 GCAATCGGTCTTGTTAGTTAAATTTAC 57.942 33.333 0.00 0.00 0.00 2.01
3255 3297 9.257865 CAATCGGTCTTGTTAGTTAAATTTACG 57.742 33.333 0.00 0.00 0.00 3.18
3256 3298 7.350110 TCGGTCTTGTTAGTTAAATTTACGG 57.650 36.000 0.00 0.00 0.00 4.02
3257 3299 6.928492 TCGGTCTTGTTAGTTAAATTTACGGT 59.072 34.615 0.00 0.00 0.00 4.83
3258 3300 7.116233 TCGGTCTTGTTAGTTAAATTTACGGTC 59.884 37.037 0.00 0.00 0.00 4.79
3259 3301 7.095691 CGGTCTTGTTAGTTAAATTTACGGTCA 60.096 37.037 0.00 0.00 0.00 4.02
3260 3302 8.558700 GGTCTTGTTAGTTAAATTTACGGTCAA 58.441 33.333 0.00 0.84 0.00 3.18
3261 3303 9.934190 GTCTTGTTAGTTAAATTTACGGTCAAA 57.066 29.630 0.00 0.00 0.00 2.69
3263 3305 9.940166 CTTGTTAGTTAAATTTACGGTCAAAGT 57.060 29.630 0.00 0.00 0.00 2.66
3265 3307 9.719279 TGTTAGTTAAATTTACGGTCAAAGTTG 57.281 29.630 0.00 0.00 29.44 3.16
3266 3308 9.934190 GTTAGTTAAATTTACGGTCAAAGTTGA 57.066 29.630 0.00 0.00 34.20 3.18
3269 3311 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
3270 3312 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
3271 3313 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
3272 3314 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
3273 3315 0.934496 CGGTCAAAGTTGAAGCACGA 59.066 50.000 0.00 0.00 39.21 4.35
3274 3316 1.070577 CGGTCAAAGTTGAAGCACGAG 60.071 52.381 0.00 0.00 39.21 4.18
3275 3317 1.264288 GGTCAAAGTTGAAGCACGAGG 59.736 52.381 0.00 0.00 39.21 4.63
3276 3318 2.210116 GTCAAAGTTGAAGCACGAGGA 58.790 47.619 0.00 0.00 39.21 3.71
3277 3319 2.808543 GTCAAAGTTGAAGCACGAGGAT 59.191 45.455 0.00 0.00 39.21 3.24
3278 3320 3.994392 GTCAAAGTTGAAGCACGAGGATA 59.006 43.478 0.00 0.00 39.21 2.59
3279 3321 4.092091 GTCAAAGTTGAAGCACGAGGATAG 59.908 45.833 0.00 0.00 39.21 2.08
3280 3322 4.021456 TCAAAGTTGAAGCACGAGGATAGA 60.021 41.667 0.00 0.00 33.55 1.98
3281 3323 3.791973 AGTTGAAGCACGAGGATAGAG 57.208 47.619 0.00 0.00 0.00 2.43
3282 3324 2.428890 AGTTGAAGCACGAGGATAGAGG 59.571 50.000 0.00 0.00 0.00 3.69
3283 3325 2.427453 GTTGAAGCACGAGGATAGAGGA 59.573 50.000 0.00 0.00 0.00 3.71
3284 3326 2.735151 TGAAGCACGAGGATAGAGGAA 58.265 47.619 0.00 0.00 0.00 3.36
3285 3327 2.690497 TGAAGCACGAGGATAGAGGAAG 59.310 50.000 0.00 0.00 0.00 3.46
3286 3328 1.036707 AGCACGAGGATAGAGGAAGC 58.963 55.000 0.00 0.00 0.00 3.86
3287 3329 0.747255 GCACGAGGATAGAGGAAGCA 59.253 55.000 0.00 0.00 0.00 3.91
3288 3330 1.537135 GCACGAGGATAGAGGAAGCAC 60.537 57.143 0.00 0.00 0.00 4.40
3289 3331 2.028130 CACGAGGATAGAGGAAGCACT 58.972 52.381 0.00 0.00 0.00 4.40
3290 3332 3.215151 CACGAGGATAGAGGAAGCACTA 58.785 50.000 0.00 0.00 0.00 2.74
3291 3333 3.003897 CACGAGGATAGAGGAAGCACTAC 59.996 52.174 0.00 0.00 0.00 2.73
3292 3334 3.215151 CGAGGATAGAGGAAGCACTACA 58.785 50.000 0.00 0.00 0.00 2.74
3293 3335 3.823873 CGAGGATAGAGGAAGCACTACAT 59.176 47.826 0.00 0.00 0.00 2.29
3294 3336 4.279671 CGAGGATAGAGGAAGCACTACATT 59.720 45.833 0.00 0.00 0.00 2.71
3295 3337 5.537188 GAGGATAGAGGAAGCACTACATTG 58.463 45.833 0.00 0.00 0.00 2.82
3296 3338 4.965532 AGGATAGAGGAAGCACTACATTGT 59.034 41.667 0.00 0.00 0.00 2.71
3297 3339 5.053145 GGATAGAGGAAGCACTACATTGTG 58.947 45.833 0.00 0.00 40.62 3.33
3298 3340 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
3299 3341 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
3300 3342 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
3301 3343 4.018960 AGAGGAAGCACTACATTGTGGAAT 60.019 41.667 7.20 0.00 38.31 3.01
3302 3344 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
3303 3345 3.129287 GGAAGCACTACATTGTGGAATGG 59.871 47.826 7.20 0.00 43.00 3.16
3304 3346 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
3308 3350 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
3309 3351 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
3310 3352 1.995542 ACATTGTGGAATGGAGGGAGT 59.004 47.619 0.00 0.00 43.00 3.85
3311 3353 3.189606 ACATTGTGGAATGGAGGGAGTA 58.810 45.455 0.00 0.00 43.00 2.59
3394 3436 4.748701 TCTCTGTCCTAGGTTAGTTTGGT 58.251 43.478 9.08 0.00 0.00 3.67
3405 3447 3.316029 GGTTAGTTTGGTACGCAAGGTTT 59.684 43.478 0.00 0.00 46.39 3.27
3467 3509 7.811117 ATTTGTGGTTAGTTGCTAACAAGTA 57.189 32.000 17.40 0.00 45.57 2.24
3493 3535 6.832384 TCGAAGTACATATAGAGTTGGGAGTT 59.168 38.462 0.00 0.00 0.00 3.01
3558 3600 6.347644 GCAAAACTATGCGCTGACATGATATA 60.348 38.462 9.73 0.00 36.45 0.86
3576 3618 9.730705 CATGATATAGGAATTAAGGAGCTTTGA 57.269 33.333 0.00 0.00 0.00 2.69
3668 3711 0.322277 AGCAACATGGACTCAGCCTG 60.322 55.000 0.00 0.00 0.00 4.85
3708 3751 1.491754 AGCCTCATGTGTGCATATCCA 59.508 47.619 0.00 0.00 33.30 3.41
3729 3772 1.590591 TAAGGCACAGGATAGGGCAA 58.409 50.000 0.00 0.00 0.00 4.52
3733 3776 0.394899 GCACAGGATAGGGCAAGCTT 60.395 55.000 0.00 0.00 0.00 3.74
3877 3921 1.071605 GTGCGCAAGTTAGTCTCCTG 58.928 55.000 14.00 0.00 41.68 3.86
3906 3975 6.485648 TCAAGCAATGAATCATCGATCATTCT 59.514 34.615 20.68 12.19 34.30 2.40
4059 4229 0.040204 CAAACCCTTCCCAGGCTGAT 59.960 55.000 17.94 0.00 39.20 2.90
4148 4318 7.817418 TGTTAATGGTATTCTGCCTAATTCC 57.183 36.000 0.00 0.00 0.00 3.01
4154 4324 5.530915 TGGTATTCTGCCTAATTCCGAATTG 59.469 40.000 15.37 6.50 30.96 2.32
4301 4471 9.813826 AATGATGGAAGAAAATAATAGGGTAGG 57.186 33.333 0.00 0.00 0.00 3.18
4303 4473 9.182642 TGATGGAAGAAAATAATAGGGTAGGAT 57.817 33.333 0.00 0.00 0.00 3.24
4324 4494 6.822676 AGGATTTCTTGCATTGACTTAGAGAG 59.177 38.462 0.00 0.00 0.00 3.20
4325 4495 6.820656 GGATTTCTTGCATTGACTTAGAGAGA 59.179 38.462 0.00 0.00 0.00 3.10
4337 4507 7.447374 TGACTTAGAGAGAGAGAGAAACTTG 57.553 40.000 0.00 0.00 0.00 3.16
4618 4935 5.841957 TTACTCAATTAGGTCTACCGGTC 57.158 43.478 12.40 0.00 42.08 4.79
4663 4980 2.711009 CCCTATAATCTCAAGGGGCACA 59.289 50.000 0.00 0.00 45.43 4.57
4732 5049 2.418368 AAGCTGCACGAATATTGGGA 57.582 45.000 1.02 0.00 0.00 4.37
4747 5064 7.118390 CGAATATTGGGATCAACAACTCCTATC 59.882 40.741 4.45 0.00 35.48 2.08
4751 5068 4.164221 TGGGATCAACAACTCCTATCTTCC 59.836 45.833 0.00 0.00 0.00 3.46
4755 5072 2.932614 CAACAACTCCTATCTTCCGCAG 59.067 50.000 0.00 0.00 0.00 5.18
4833 5150 6.936900 ACTATATTTACATGACCTCCACATGC 59.063 38.462 0.00 0.00 45.95 4.06
5072 5393 2.410469 GCCGTTGCAGCCATGATC 59.590 61.111 0.00 0.00 37.47 2.92
5590 10261 1.243342 TTGTTCATCGCCAGGCAAGG 61.243 55.000 13.30 0.00 0.00 3.61
5594 10265 2.439156 ATCGCCAGGCAAGGAAGC 60.439 61.111 13.30 0.00 0.00 3.86
5607 10278 5.246883 AGGCAAGGAAGCTTTAAACATTGAT 59.753 36.000 12.72 0.40 34.17 2.57
5640 10311 4.642445 TGCTCCTGCATTGATAATGTTG 57.358 40.909 3.77 0.00 45.31 3.33
5642 10313 5.192176 TGCTCCTGCATTGATAATGTTGTA 58.808 37.500 3.77 0.00 45.31 2.41
5668 10339 6.715347 ATAAACTGTGATTTAATCCCTGGC 57.285 37.500 2.22 0.00 0.00 4.85
5686 10358 4.380867 CCTGGCTTACTGATTCGCATTTTT 60.381 41.667 0.00 0.00 0.00 1.94
5695 10367 0.385751 TTCGCATTTTTGCAACCGGA 59.614 45.000 9.46 0.00 34.41 5.14
5750 10422 1.335182 CAGCATCCTGTACGAGACGAT 59.665 52.381 0.00 0.00 34.31 3.73
5760 10432 1.443702 CGAGACGATGACGCCACAA 60.444 57.895 0.00 0.00 43.96 3.33
5852 10590 2.107953 GCCTCGGCCACAGATCTC 59.892 66.667 2.24 0.00 34.56 2.75
5889 10896 1.453155 AATGATTGGCGCGTTCTTCT 58.547 45.000 8.43 0.00 0.00 2.85
5898 10905 2.158841 GGCGCGTTCTTCTGAATTACAA 59.841 45.455 8.43 0.00 34.40 2.41
5899 10906 3.153735 GCGCGTTCTTCTGAATTACAAC 58.846 45.455 8.43 0.00 34.40 3.32
5900 10907 3.732943 CGCGTTCTTCTGAATTACAACC 58.267 45.455 0.00 0.00 34.40 3.77
5902 10909 4.434330 CGCGTTCTTCTGAATTACAACCTC 60.434 45.833 0.00 0.00 34.40 3.85
5903 10910 4.691216 GCGTTCTTCTGAATTACAACCTCT 59.309 41.667 0.00 0.00 34.40 3.69
5904 10911 5.389935 GCGTTCTTCTGAATTACAACCTCTG 60.390 44.000 0.00 0.00 34.40 3.35
5905 10912 5.120830 CGTTCTTCTGAATTACAACCTCTGG 59.879 44.000 0.00 0.00 34.40 3.86
5906 10913 5.165961 TCTTCTGAATTACAACCTCTGGG 57.834 43.478 0.00 0.00 38.88 4.45
5907 10914 4.844085 TCTTCTGAATTACAACCTCTGGGA 59.156 41.667 0.00 0.00 36.25 4.37
5908 10915 4.553330 TCTGAATTACAACCTCTGGGAC 57.447 45.455 0.00 0.00 36.25 4.46
5909 10916 3.263425 TCTGAATTACAACCTCTGGGACC 59.737 47.826 0.00 0.00 36.25 4.46
5910 10917 2.983192 TGAATTACAACCTCTGGGACCA 59.017 45.455 0.00 0.00 36.25 4.02
5911 10918 3.396276 TGAATTACAACCTCTGGGACCAA 59.604 43.478 0.00 0.00 36.25 3.67
5912 10919 3.721087 ATTACAACCTCTGGGACCAAG 57.279 47.619 0.00 0.00 36.25 3.61
5913 10920 0.690762 TACAACCTCTGGGACCAAGC 59.309 55.000 0.00 0.00 36.25 4.01
5914 10921 1.062488 ACAACCTCTGGGACCAAGCT 61.062 55.000 0.00 0.00 36.25 3.74
5915 10922 0.607489 CAACCTCTGGGACCAAGCTG 60.607 60.000 0.00 0.00 36.25 4.24
5916 10923 1.062488 AACCTCTGGGACCAAGCTGT 61.062 55.000 0.00 0.00 36.25 4.40
5917 10924 1.062488 ACCTCTGGGACCAAGCTGTT 61.062 55.000 0.00 0.00 36.25 3.16
5918 10925 0.111253 CCTCTGGGACCAAGCTGTTT 59.889 55.000 0.00 0.00 33.58 2.83
5919 10926 1.242076 CTCTGGGACCAAGCTGTTTG 58.758 55.000 0.00 0.00 36.50 2.93
5920 10927 0.550914 TCTGGGACCAAGCTGTTTGT 59.449 50.000 3.57 0.00 34.87 2.83
5921 10928 1.771854 TCTGGGACCAAGCTGTTTGTA 59.228 47.619 3.57 0.00 34.87 2.41
5922 10929 2.173782 TCTGGGACCAAGCTGTTTGTAA 59.826 45.455 3.57 0.00 34.87 2.41
5923 10930 2.554032 CTGGGACCAAGCTGTTTGTAAG 59.446 50.000 3.57 0.00 34.87 2.34
5924 10931 2.173782 TGGGACCAAGCTGTTTGTAAGA 59.826 45.455 3.57 0.00 34.87 2.10
5925 10932 3.181434 TGGGACCAAGCTGTTTGTAAGAT 60.181 43.478 3.57 0.00 34.87 2.40
5926 10933 3.191371 GGGACCAAGCTGTTTGTAAGATG 59.809 47.826 3.57 0.00 34.87 2.90
5927 10934 3.821033 GGACCAAGCTGTTTGTAAGATGT 59.179 43.478 3.57 0.00 34.87 3.06
5928 10935 4.278419 GGACCAAGCTGTTTGTAAGATGTT 59.722 41.667 3.57 0.00 34.87 2.71
5929 10936 5.221244 GGACCAAGCTGTTTGTAAGATGTTT 60.221 40.000 3.57 0.00 34.87 2.83
5930 10937 6.220726 ACCAAGCTGTTTGTAAGATGTTTT 57.779 33.333 3.57 0.00 34.87 2.43
5931 10938 6.639563 ACCAAGCTGTTTGTAAGATGTTTTT 58.360 32.000 3.57 0.00 34.87 1.94
5932 10939 6.534793 ACCAAGCTGTTTGTAAGATGTTTTTG 59.465 34.615 3.57 0.00 34.87 2.44
5933 10940 6.413269 CAAGCTGTTTGTAAGATGTTTTTGC 58.587 36.000 0.00 0.00 31.92 3.68
5934 10941 5.659463 AGCTGTTTGTAAGATGTTTTTGCA 58.341 33.333 0.00 0.00 0.00 4.08
5935 10942 6.105333 AGCTGTTTGTAAGATGTTTTTGCAA 58.895 32.000 0.00 0.00 0.00 4.08
5936 10943 6.256321 AGCTGTTTGTAAGATGTTTTTGCAAG 59.744 34.615 0.00 0.00 32.96 4.01
5937 10944 6.343226 TGTTTGTAAGATGTTTTTGCAAGC 57.657 33.333 0.00 0.00 32.96 4.01
5938 10945 6.105333 TGTTTGTAAGATGTTTTTGCAAGCT 58.895 32.000 0.00 0.00 34.33 3.74
5939 10946 6.035866 TGTTTGTAAGATGTTTTTGCAAGCTG 59.964 34.615 0.00 0.00 34.33 4.24
5940 10947 5.261209 TGTAAGATGTTTTTGCAAGCTGT 57.739 34.783 0.00 0.00 0.00 4.40
5941 10948 5.659463 TGTAAGATGTTTTTGCAAGCTGTT 58.341 33.333 0.00 0.00 0.00 3.16
5942 10949 6.105333 TGTAAGATGTTTTTGCAAGCTGTTT 58.895 32.000 0.00 0.00 0.00 2.83
5943 10950 6.593382 TGTAAGATGTTTTTGCAAGCTGTTTT 59.407 30.769 0.00 0.00 0.00 2.43
5944 10951 7.761704 TGTAAGATGTTTTTGCAAGCTGTTTTA 59.238 29.630 0.00 0.00 0.00 1.52
5945 10952 6.833342 AGATGTTTTTGCAAGCTGTTTTAG 57.167 33.333 0.00 0.00 0.00 1.85
6061 11085 6.417191 TTTATTCGATATAAATCCCGCTGC 57.583 37.500 8.01 0.00 0.00 5.25
6076 11102 1.593070 CGCTGCGTGCACAGATAAATC 60.593 52.381 18.64 0.00 43.06 2.17
6099 11125 0.958382 TACGCCAATTGCCAGACCAC 60.958 55.000 0.00 0.00 36.24 4.16
6100 11126 2.267351 CGCCAATTGCCAGACCACA 61.267 57.895 0.00 0.00 36.24 4.17
6101 11127 1.290009 GCCAATTGCCAGACCACAC 59.710 57.895 0.00 0.00 0.00 3.82
6125 11151 2.683968 CGCCACAACTATACACACACT 58.316 47.619 0.00 0.00 0.00 3.55
6126 11152 2.411748 CGCCACAACTATACACACACTG 59.588 50.000 0.00 0.00 0.00 3.66
6127 11153 3.399330 GCCACAACTATACACACACTGT 58.601 45.455 0.00 0.00 36.82 3.55
6128 11154 3.432252 GCCACAACTATACACACACTGTC 59.568 47.826 0.00 0.00 33.91 3.51
6130 11156 4.542735 CACAACTATACACACACTGTCGA 58.457 43.478 0.00 0.00 33.91 4.20
6131 11157 5.161358 CACAACTATACACACACTGTCGAT 58.839 41.667 0.00 0.00 33.91 3.59
6144 11173 1.331399 TGTCGATGCCCATAACCCGA 61.331 55.000 0.00 0.00 0.00 5.14
6146 11175 0.762418 TCGATGCCCATAACCCGAAT 59.238 50.000 0.00 0.00 0.00 3.34
6147 11176 1.142060 TCGATGCCCATAACCCGAATT 59.858 47.619 0.00 0.00 0.00 2.17
6159 11188 0.179129 CCCGAATTGTGCAGGAATGC 60.179 55.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
252 253 4.115199 CGGCCAAGGGGGAGAAGG 62.115 72.222 2.24 0.00 40.01 3.46
296 297 0.035056 AGGGATGCTGCTGTGTTACC 60.035 55.000 0.00 0.00 0.00 2.85
298 299 0.108186 CGAGGGATGCTGCTGTGTTA 60.108 55.000 0.00 0.00 0.00 2.41
300 301 2.267006 CGAGGGATGCTGCTGTGT 59.733 61.111 0.00 0.00 0.00 3.72
451 452 2.990735 CGTTCGCATCTCGTGAGC 59.009 61.111 0.00 0.00 39.67 4.26
666 669 3.929610 AGCGCTAGAGAACACAGATTTTC 59.070 43.478 8.99 0.00 0.00 2.29
905 913 0.260230 ATGAGAGAGAAGCGAGGGGA 59.740 55.000 0.00 0.00 0.00 4.81
913 921 1.407258 GACCGTGGGATGAGAGAGAAG 59.593 57.143 0.00 0.00 0.00 2.85
939 963 3.758133 GAGGGAGGGGATGAGCGGA 62.758 68.421 0.00 0.00 0.00 5.54
951 975 0.464554 GAGGCGAATTTGGGAGGGAG 60.465 60.000 0.00 0.00 0.00 4.30
952 976 1.607612 GAGGCGAATTTGGGAGGGA 59.392 57.895 0.00 0.00 0.00 4.20
1203 1227 4.400961 AGGTTCTGCAGCGCCTCC 62.401 66.667 19.09 11.89 0.00 4.30
1332 1356 1.880340 GAAGTCGAGCATCCAGGCG 60.880 63.158 0.00 0.00 39.27 5.52
1437 1461 2.886124 GGCGCGGAGTAGAAGCAC 60.886 66.667 8.83 0.00 0.00 4.40
1701 1725 1.376683 GTCACCAGGCGGCACAATA 60.377 57.895 13.08 0.00 34.57 1.90
1704 1728 2.974692 AATTGTCACCAGGCGGCACA 62.975 55.000 13.08 2.87 34.57 4.57
1773 1797 3.469863 GACCGTGTCCTTGGGCACA 62.470 63.158 22.07 1.44 35.51 4.57
1812 1836 7.604164 GTCTCCTTGTCATTGATTCTGAAGTAA 59.396 37.037 0.00 0.00 0.00 2.24
1827 1851 2.525629 TGCCCGGTCTCCTTGTCA 60.526 61.111 0.00 0.00 0.00 3.58
2187 2211 1.340017 TGCTGGTAATCCTTGGTCAGC 60.340 52.381 0.00 0.00 45.28 4.26
2223 2247 5.832539 TCTTCCCCTTATGGATCATCTTC 57.167 43.478 0.00 0.00 35.39 2.87
2271 2295 1.153005 CTTCCCTGCTGAGATGCCC 60.153 63.158 0.00 0.00 0.00 5.36
2274 2298 2.630158 CTTGACTTCCCTGCTGAGATG 58.370 52.381 0.00 0.00 0.00 2.90
2286 2310 3.125316 CACGGTAGCAATTCCTTGACTTC 59.875 47.826 0.00 0.00 34.04 3.01
2445 2469 2.849942 TGCACGCCAAGCTATGATAAT 58.150 42.857 0.00 0.00 0.00 1.28
2519 2543 3.896648 ATGCGTGTTTCACCACTTAAG 57.103 42.857 0.00 0.00 33.07 1.85
2553 2577 1.795768 ATCTACAACGTGTGCCACTG 58.204 50.000 0.00 0.00 31.34 3.66
2554 2578 3.257375 TCTTATCTACAACGTGTGCCACT 59.743 43.478 0.00 0.00 31.34 4.00
2557 2581 5.796350 AAATCTTATCTACAACGTGTGCC 57.204 39.130 0.00 0.00 0.00 5.01
2563 2587 8.060679 CAGAGCATGAAAATCTTATCTACAACG 58.939 37.037 0.00 0.00 0.00 4.10
2566 2590 8.481314 AGACAGAGCATGAAAATCTTATCTACA 58.519 33.333 0.00 0.00 0.00 2.74
2577 2601 2.810274 GCACAGAGACAGAGCATGAAAA 59.190 45.455 0.00 0.00 0.00 2.29
2612 2636 4.814771 GTGCTTCACCACTTAACAGTAACT 59.185 41.667 0.00 0.00 33.02 2.24
2613 2637 4.573201 TGTGCTTCACCACTTAACAGTAAC 59.427 41.667 0.00 0.00 36.68 2.50
2614 2638 4.573201 GTGTGCTTCACCACTTAACAGTAA 59.427 41.667 2.08 0.00 40.84 2.24
2615 2639 4.124238 GTGTGCTTCACCACTTAACAGTA 58.876 43.478 2.08 0.00 40.84 2.74
2616 2640 2.943033 GTGTGCTTCACCACTTAACAGT 59.057 45.455 2.08 0.00 40.84 3.55
2617 2641 2.942376 TGTGTGCTTCACCACTTAACAG 59.058 45.455 9.37 0.00 45.61 3.16
2618 2642 2.992593 TGTGTGCTTCACCACTTAACA 58.007 42.857 9.37 0.00 45.61 2.41
2619 2643 4.994852 TCTATGTGTGCTTCACCACTTAAC 59.005 41.667 9.37 0.00 45.61 2.01
2620 2644 4.994852 GTCTATGTGTGCTTCACCACTTAA 59.005 41.667 9.37 0.00 45.61 1.85
2621 2645 4.283467 AGTCTATGTGTGCTTCACCACTTA 59.717 41.667 9.37 0.00 45.61 2.24
2622 2646 3.071602 AGTCTATGTGTGCTTCACCACTT 59.928 43.478 9.37 0.00 45.61 3.16
2623 2647 2.634940 AGTCTATGTGTGCTTCACCACT 59.365 45.455 9.37 4.80 45.61 4.00
2624 2648 3.045601 AGTCTATGTGTGCTTCACCAC 57.954 47.619 9.37 0.00 45.61 4.16
2625 2649 3.769739 AAGTCTATGTGTGCTTCACCA 57.230 42.857 9.37 0.00 45.61 4.17
2636 2660 4.804261 GCAACTGAGGTCCAAAGTCTATGT 60.804 45.833 0.00 0.00 0.00 2.29
2760 2785 2.904866 GGCCACTGCACAAACGGA 60.905 61.111 0.00 0.00 40.13 4.69
2766 2792 4.168291 TCACACGGCCACTGCACA 62.168 61.111 2.24 0.00 40.13 4.57
2767 2793 3.649986 GTCACACGGCCACTGCAC 61.650 66.667 2.24 0.00 40.13 4.57
2768 2794 3.689002 TTGTCACACGGCCACTGCA 62.689 57.895 2.24 0.00 40.13 4.41
2825 2851 1.402968 CGCAAACATGAGGCTGCTATT 59.597 47.619 0.00 0.00 32.52 1.73
2897 2923 7.493645 TCTTCACAGAGTTATACAGCATGAATG 59.506 37.037 0.00 0.00 39.69 2.67
2980 3021 0.105964 ACTGACGCAACCACAAGCTA 59.894 50.000 0.00 0.00 0.00 3.32
3062 3104 3.071747 GGAATGGAGGGAGTATGAGTTCC 59.928 52.174 0.00 0.00 0.00 3.62
3072 3114 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
3073 3115 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
3074 3116 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
3075 3117 4.320494 GCGCACTATATTTTGGAATGGAGG 60.320 45.833 0.30 0.00 0.00 4.30
3076 3118 4.320494 GGCGCACTATATTTTGGAATGGAG 60.320 45.833 10.83 0.00 0.00 3.86
3077 3119 3.568007 GGCGCACTATATTTTGGAATGGA 59.432 43.478 10.83 0.00 0.00 3.41
3078 3120 3.305335 GGGCGCACTATATTTTGGAATGG 60.305 47.826 10.83 0.00 0.00 3.16
3079 3121 3.609175 CGGGCGCACTATATTTTGGAATG 60.609 47.826 8.62 0.00 0.00 2.67
3080 3122 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
3081 3123 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
3082 3124 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
3083 3125 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
3084 3126 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
3085 3127 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
3086 3128 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
3100 3142 4.771356 TCGACCTCGGAAAGCGCG 62.771 66.667 0.00 0.00 40.29 6.86
3101 3143 2.431942 TTCGACCTCGGAAAGCGC 60.432 61.111 0.00 0.00 40.29 5.92
3102 3144 0.666577 AAGTTCGACCTCGGAAAGCG 60.667 55.000 0.00 0.00 40.29 4.68
3103 3145 1.194772 CAAAGTTCGACCTCGGAAAGC 59.805 52.381 0.00 0.00 40.29 3.51
3104 3146 2.475487 GTCAAAGTTCGACCTCGGAAAG 59.525 50.000 0.00 0.00 40.29 2.62
3105 3147 2.476821 GTCAAAGTTCGACCTCGGAAA 58.523 47.619 0.00 0.00 40.29 3.13
3106 3148 2.144482 GTCAAAGTTCGACCTCGGAA 57.856 50.000 0.00 0.00 40.29 4.30
3107 3149 3.879912 GTCAAAGTTCGACCTCGGA 57.120 52.632 0.00 0.00 40.29 4.55
3113 3155 8.011106 TCGTTAAATTTATGGTCAAAGTTCGAC 58.989 33.333 0.00 0.00 29.44 4.20
3114 3156 8.085720 TCGTTAAATTTATGGTCAAAGTTCGA 57.914 30.769 0.00 0.00 29.44 3.71
3115 3157 8.624028 GTTCGTTAAATTTATGGTCAAAGTTCG 58.376 33.333 0.00 0.00 29.44 3.95
3116 3158 8.624028 CGTTCGTTAAATTTATGGTCAAAGTTC 58.376 33.333 0.00 0.00 29.44 3.01
3117 3159 8.344098 TCGTTCGTTAAATTTATGGTCAAAGTT 58.656 29.630 0.00 0.00 31.36 2.66
3118 3160 7.863666 TCGTTCGTTAAATTTATGGTCAAAGT 58.136 30.769 0.00 0.00 0.00 2.66
3119 3161 8.225107 TCTCGTTCGTTAAATTTATGGTCAAAG 58.775 33.333 0.00 0.00 0.00 2.77
3120 3162 8.011106 GTCTCGTTCGTTAAATTTATGGTCAAA 58.989 33.333 0.00 0.00 0.00 2.69
3121 3163 7.360269 GGTCTCGTTCGTTAAATTTATGGTCAA 60.360 37.037 0.00 0.00 0.00 3.18
3122 3164 6.091169 GGTCTCGTTCGTTAAATTTATGGTCA 59.909 38.462 0.00 0.00 0.00 4.02
3123 3165 6.472680 GGTCTCGTTCGTTAAATTTATGGTC 58.527 40.000 0.00 0.00 0.00 4.02
3124 3166 5.062558 CGGTCTCGTTCGTTAAATTTATGGT 59.937 40.000 0.00 0.00 0.00 3.55
3125 3167 5.289193 TCGGTCTCGTTCGTTAAATTTATGG 59.711 40.000 0.00 0.00 37.69 2.74
3126 3168 6.321873 TCGGTCTCGTTCGTTAAATTTATG 57.678 37.500 0.00 0.00 37.69 1.90
3127 3169 7.396419 CAATCGGTCTCGTTCGTTAAATTTAT 58.604 34.615 0.00 0.00 37.69 1.40
3128 3170 6.670452 GCAATCGGTCTCGTTCGTTAAATTTA 60.670 38.462 0.00 0.00 37.69 1.40
3129 3171 5.614760 CAATCGGTCTCGTTCGTTAAATTT 58.385 37.500 0.00 0.00 37.69 1.82
3130 3172 4.435121 GCAATCGGTCTCGTTCGTTAAATT 60.435 41.667 0.00 0.00 37.69 1.82
3131 3173 3.061697 GCAATCGGTCTCGTTCGTTAAAT 59.938 43.478 0.00 0.00 37.69 1.40
3132 3174 2.409378 GCAATCGGTCTCGTTCGTTAAA 59.591 45.455 0.00 0.00 37.69 1.52
3133 3175 1.987770 GCAATCGGTCTCGTTCGTTAA 59.012 47.619 0.00 0.00 37.69 2.01
3134 3176 1.621107 GCAATCGGTCTCGTTCGTTA 58.379 50.000 0.00 0.00 37.69 3.18
3135 3177 1.342082 CGCAATCGGTCTCGTTCGTT 61.342 55.000 0.00 0.00 37.69 3.85
3136 3178 1.800315 CGCAATCGGTCTCGTTCGT 60.800 57.895 0.00 0.00 37.69 3.85
3137 3179 2.987593 CGCAATCGGTCTCGTTCG 59.012 61.111 0.00 0.00 37.69 3.95
3147 3189 1.917782 TTTTTCTCCCGCCGCAATCG 61.918 55.000 0.00 0.00 0.00 3.34
3148 3190 0.179163 CTTTTTCTCCCGCCGCAATC 60.179 55.000 0.00 0.00 0.00 2.67
3149 3191 0.893727 ACTTTTTCTCCCGCCGCAAT 60.894 50.000 0.00 0.00 0.00 3.56
3150 3192 1.104577 AACTTTTTCTCCCGCCGCAA 61.105 50.000 0.00 0.00 0.00 4.85
3151 3193 0.250381 TAACTTTTTCTCCCGCCGCA 60.250 50.000 0.00 0.00 0.00 5.69
3152 3194 0.167470 GTAACTTTTTCTCCCGCCGC 59.833 55.000 0.00 0.00 0.00 6.53
3153 3195 1.515081 TGTAACTTTTTCTCCCGCCG 58.485 50.000 0.00 0.00 0.00 6.46
3154 3196 5.830000 ATTATGTAACTTTTTCTCCCGCC 57.170 39.130 0.00 0.00 0.00 6.13
3155 3197 9.628746 TTTTAATTATGTAACTTTTTCTCCCGC 57.371 29.630 0.00 0.00 0.00 6.13
3195 3237 9.378551 AGCAAAAGTTATATCAGTGAATTCGTA 57.621 29.630 0.00 0.00 0.00 3.43
3196 3238 8.268850 AGCAAAAGTTATATCAGTGAATTCGT 57.731 30.769 0.00 0.00 0.00 3.85
3197 3239 7.852945 GGAGCAAAAGTTATATCAGTGAATTCG 59.147 37.037 0.00 0.00 0.00 3.34
3198 3240 8.131731 GGGAGCAAAAGTTATATCAGTGAATTC 58.868 37.037 0.00 0.00 0.00 2.17
3199 3241 7.201732 CGGGAGCAAAAGTTATATCAGTGAATT 60.202 37.037 0.00 0.00 0.00 2.17
3200 3242 6.260936 CGGGAGCAAAAGTTATATCAGTGAAT 59.739 38.462 0.00 0.00 0.00 2.57
3201 3243 5.584649 CGGGAGCAAAAGTTATATCAGTGAA 59.415 40.000 0.00 0.00 0.00 3.18
3202 3244 5.105106 TCGGGAGCAAAAGTTATATCAGTGA 60.105 40.000 0.00 0.00 0.00 3.41
3203 3245 5.006746 GTCGGGAGCAAAAGTTATATCAGTG 59.993 44.000 0.00 0.00 0.00 3.66
3204 3246 5.116882 GTCGGGAGCAAAAGTTATATCAGT 58.883 41.667 0.00 0.00 0.00 3.41
3205 3247 4.209288 CGTCGGGAGCAAAAGTTATATCAG 59.791 45.833 0.00 0.00 0.00 2.90
3206 3248 4.116961 CGTCGGGAGCAAAAGTTATATCA 58.883 43.478 0.00 0.00 0.00 2.15
3207 3249 3.059800 GCGTCGGGAGCAAAAGTTATATC 60.060 47.826 0.00 0.00 34.19 1.63
3208 3250 2.870411 GCGTCGGGAGCAAAAGTTATAT 59.130 45.455 0.00 0.00 34.19 0.86
3209 3251 2.273557 GCGTCGGGAGCAAAAGTTATA 58.726 47.619 0.00 0.00 34.19 0.98
3210 3252 1.084289 GCGTCGGGAGCAAAAGTTAT 58.916 50.000 0.00 0.00 34.19 1.89
3211 3253 0.249953 TGCGTCGGGAGCAAAAGTTA 60.250 50.000 0.00 0.00 42.18 2.24
3212 3254 1.525077 TGCGTCGGGAGCAAAAGTT 60.525 52.632 0.00 0.00 42.18 2.66
3213 3255 2.110213 TGCGTCGGGAGCAAAAGT 59.890 55.556 0.00 0.00 42.18 2.66
3225 3267 2.334838 ACTAACAAGACCGATTGCGTC 58.665 47.619 0.00 0.00 33.28 5.19
3226 3268 2.450609 ACTAACAAGACCGATTGCGT 57.549 45.000 0.00 0.00 33.28 5.24
3227 3269 4.914312 TTAACTAACAAGACCGATTGCG 57.086 40.909 0.00 0.00 33.28 4.85
3228 3270 9.058424 GTAAATTTAACTAACAAGACCGATTGC 57.942 33.333 0.00 0.00 33.28 3.56
3229 3271 9.257865 CGTAAATTTAACTAACAAGACCGATTG 57.742 33.333 0.00 0.00 36.22 2.67
3230 3272 8.445493 CCGTAAATTTAACTAACAAGACCGATT 58.555 33.333 0.00 0.00 0.00 3.34
3231 3273 7.603784 ACCGTAAATTTAACTAACAAGACCGAT 59.396 33.333 0.00 0.00 0.00 4.18
3232 3274 6.928492 ACCGTAAATTTAACTAACAAGACCGA 59.072 34.615 0.00 0.00 0.00 4.69
3233 3275 7.095691 TGACCGTAAATTTAACTAACAAGACCG 60.096 37.037 0.00 0.00 0.00 4.79
3234 3276 8.086851 TGACCGTAAATTTAACTAACAAGACC 57.913 34.615 0.00 0.00 0.00 3.85
3235 3277 9.934190 TTTGACCGTAAATTTAACTAACAAGAC 57.066 29.630 0.00 0.00 0.00 3.01
3237 3279 9.940166 ACTTTGACCGTAAATTTAACTAACAAG 57.060 29.630 0.00 2.45 0.00 3.16
3239 3281 9.719279 CAACTTTGACCGTAAATTTAACTAACA 57.281 29.630 0.00 0.00 0.00 2.41
3240 3282 9.934190 TCAACTTTGACCGTAAATTTAACTAAC 57.066 29.630 0.00 0.00 31.01 2.34
3243 3285 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
3244 3286 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
3245 3287 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
3246 3288 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
3247 3289 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
3248 3290 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
3249 3291 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
3250 3292 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
3251 3293 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
3252 3294 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
3253 3295 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
3254 3296 0.934496 TCGTGCTTCAACTTTGACCG 59.066 50.000 0.00 0.00 36.83 4.79
3255 3297 1.264288 CCTCGTGCTTCAACTTTGACC 59.736 52.381 0.00 0.00 36.83 4.02
3256 3298 2.210116 TCCTCGTGCTTCAACTTTGAC 58.790 47.619 0.00 0.00 36.83 3.18
3257 3299 2.613026 TCCTCGTGCTTCAACTTTGA 57.387 45.000 0.00 0.00 34.92 2.69
3258 3300 4.245660 TCTATCCTCGTGCTTCAACTTTG 58.754 43.478 0.00 0.00 0.00 2.77
3259 3301 4.499183 CTCTATCCTCGTGCTTCAACTTT 58.501 43.478 0.00 0.00 0.00 2.66
3260 3302 3.118956 CCTCTATCCTCGTGCTTCAACTT 60.119 47.826 0.00 0.00 0.00 2.66
3261 3303 2.428890 CCTCTATCCTCGTGCTTCAACT 59.571 50.000 0.00 0.00 0.00 3.16
3262 3304 2.427453 TCCTCTATCCTCGTGCTTCAAC 59.573 50.000 0.00 0.00 0.00 3.18
3263 3305 2.735151 TCCTCTATCCTCGTGCTTCAA 58.265 47.619 0.00 0.00 0.00 2.69
3264 3306 2.437085 TCCTCTATCCTCGTGCTTCA 57.563 50.000 0.00 0.00 0.00 3.02
3265 3307 2.544903 GCTTCCTCTATCCTCGTGCTTC 60.545 54.545 0.00 0.00 0.00 3.86
3266 3308 1.410882 GCTTCCTCTATCCTCGTGCTT 59.589 52.381 0.00 0.00 0.00 3.91
3267 3309 1.036707 GCTTCCTCTATCCTCGTGCT 58.963 55.000 0.00 0.00 0.00 4.40
3268 3310 0.747255 TGCTTCCTCTATCCTCGTGC 59.253 55.000 0.00 0.00 0.00 5.34
3269 3311 2.028130 AGTGCTTCCTCTATCCTCGTG 58.972 52.381 0.00 0.00 0.00 4.35
3270 3312 2.445682 AGTGCTTCCTCTATCCTCGT 57.554 50.000 0.00 0.00 0.00 4.18
3271 3313 3.215151 TGTAGTGCTTCCTCTATCCTCG 58.785 50.000 0.00 0.00 0.00 4.63
3272 3314 5.069781 ACAATGTAGTGCTTCCTCTATCCTC 59.930 44.000 0.00 0.00 0.00 3.71
3273 3315 4.965532 ACAATGTAGTGCTTCCTCTATCCT 59.034 41.667 0.00 0.00 0.00 3.24
3274 3316 5.053145 CACAATGTAGTGCTTCCTCTATCC 58.947 45.833 0.00 0.00 32.04 2.59
3275 3317 5.053145 CCACAATGTAGTGCTTCCTCTATC 58.947 45.833 0.00 0.00 38.18 2.08
3276 3318 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
3277 3319 4.093743 TCCACAATGTAGTGCTTCCTCTA 58.906 43.478 0.00 0.00 38.18 2.43
3278 3320 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
3279 3321 3.334583 TCCACAATGTAGTGCTTCCTC 57.665 47.619 0.00 0.00 38.18 3.71
3280 3322 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
3281 3323 3.129287 CCATTCCACAATGTAGTGCTTCC 59.871 47.826 0.00 0.00 38.22 3.46
3282 3324 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
3283 3325 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
3284 3326 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
3285 3327 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
3286 3328 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
3287 3329 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
3288 3330 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
3289 3331 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
3290 3332 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
3291 3333 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
3292 3334 5.472301 AATTACTCCCTCCATTCCACAAT 57.528 39.130 0.00 0.00 0.00 2.71
3293 3335 4.946160 AATTACTCCCTCCATTCCACAA 57.054 40.909 0.00 0.00 0.00 3.33
3294 3336 4.946160 AAATTACTCCCTCCATTCCACA 57.054 40.909 0.00 0.00 0.00 4.17
3295 3337 7.060421 TCAATAAATTACTCCCTCCATTCCAC 58.940 38.462 0.00 0.00 0.00 4.02
3296 3338 7.219601 TCAATAAATTACTCCCTCCATTCCA 57.780 36.000 0.00 0.00 0.00 3.53
3297 3339 8.712228 ATTCAATAAATTACTCCCTCCATTCC 57.288 34.615 0.00 0.00 0.00 3.01
3298 3340 9.971922 CAATTCAATAAATTACTCCCTCCATTC 57.028 33.333 0.00 0.00 35.77 2.67
3299 3341 8.424133 GCAATTCAATAAATTACTCCCTCCATT 58.576 33.333 0.00 0.00 35.77 3.16
3300 3342 7.786464 AGCAATTCAATAAATTACTCCCTCCAT 59.214 33.333 0.00 0.00 35.77 3.41
3301 3343 7.125391 AGCAATTCAATAAATTACTCCCTCCA 58.875 34.615 0.00 0.00 35.77 3.86
3302 3344 7.285401 TGAGCAATTCAATAAATTACTCCCTCC 59.715 37.037 7.80 0.00 43.11 4.30
3303 3345 8.225603 TGAGCAATTCAATAAATTACTCCCTC 57.774 34.615 7.80 0.00 43.11 4.30
3304 3346 8.636213 CATGAGCAATTCAATAAATTACTCCCT 58.364 33.333 7.80 0.00 43.11 4.20
3305 3347 8.416329 ACATGAGCAATTCAATAAATTACTCCC 58.584 33.333 0.00 0.00 43.11 4.30
3306 3348 9.241317 CACATGAGCAATTCAATAAATTACTCC 57.759 33.333 0.00 0.00 43.11 3.85
3307 3349 9.241317 CCACATGAGCAATTCAATAAATTACTC 57.759 33.333 0.00 4.50 43.66 2.59
3308 3350 8.970020 TCCACATGAGCAATTCAATAAATTACT 58.030 29.630 0.00 0.00 39.77 2.24
3309 3351 9.754382 ATCCACATGAGCAATTCAATAAATTAC 57.246 29.630 0.00 0.00 39.77 1.89
3352 3394 7.070322 ACAGAGAAAAGGCCCTTTATATACGTA 59.930 37.037 9.62 0.00 31.99 3.57
3353 3395 6.126854 ACAGAGAAAAGGCCCTTTATATACGT 60.127 38.462 9.62 0.49 31.99 3.57
3354 3396 6.289064 ACAGAGAAAAGGCCCTTTATATACG 58.711 40.000 9.62 0.00 31.99 3.06
3355 3397 6.711194 GGACAGAGAAAAGGCCCTTTATATAC 59.289 42.308 9.62 0.47 31.99 1.47
3405 3447 0.466739 CTGCCCTATGCCAGCAATCA 60.467 55.000 0.00 0.00 40.16 2.57
3467 3509 7.005296 ACTCCCAACTCTATATGTACTTCGAT 58.995 38.462 0.00 0.00 0.00 3.59
3525 3567 3.056607 AGCGCATAGTTTTGCCTCAAATT 60.057 39.130 11.47 0.00 39.52 1.82
3544 3586 7.323420 TCCTTAATTCCTATATCATGTCAGCG 58.677 38.462 0.00 0.00 0.00 5.18
3558 3600 8.699130 CCAAATTATCAAAGCTCCTTAATTCCT 58.301 33.333 0.00 0.00 0.00 3.36
3576 3618 6.078664 TGGTACCCTCAAACAACCAAATTAT 58.921 36.000 10.07 0.00 37.29 1.28
3635 3678 2.852180 TTGCTGCTGCTGGCTTGTG 61.852 57.895 17.00 0.00 42.39 3.33
3643 3686 0.959372 GAGTCCATGTTGCTGCTGCT 60.959 55.000 17.00 0.00 40.48 4.24
3668 3711 1.416049 CTATCGCACACGCACACAC 59.584 57.895 0.00 0.00 39.84 3.82
3708 3751 2.135189 TGCCCTATCCTGTGCCTTAAT 58.865 47.619 0.00 0.00 0.00 1.40
3729 3772 5.453866 TCTCTTACTGTCTACCCTAAGCT 57.546 43.478 0.00 0.00 0.00 3.74
3733 3776 8.554870 TGAATACTTCTCTTACTGTCTACCCTA 58.445 37.037 0.00 0.00 0.00 3.53
3877 3921 5.973651 TCGATGATTCATTGCTTGACTAC 57.026 39.130 8.79 0.00 32.84 2.73
4031 4201 1.145119 GGGAAGGGTTTGAAGACCAGT 59.855 52.381 0.00 0.00 41.65 4.00
4059 4229 8.514330 AATTTTACGCTAGGAATTGTTATGGA 57.486 30.769 0.00 0.00 0.00 3.41
4148 4318 4.093408 CAGTACATGTGGGAGTTCAATTCG 59.907 45.833 9.11 0.00 0.00 3.34
4154 4324 3.008049 AGTTCCAGTACATGTGGGAGTTC 59.992 47.826 9.11 7.47 35.58 3.01
4301 4471 7.763528 TCTCTCTCTAAGTCAATGCAAGAAATC 59.236 37.037 0.00 0.00 0.00 2.17
4303 4473 6.997655 TCTCTCTCTAAGTCAATGCAAGAAA 58.002 36.000 0.00 0.00 0.00 2.52
4324 4494 3.733337 TGAGTTGCCAAGTTTCTCTCTC 58.267 45.455 0.00 0.00 0.00 3.20
4325 4495 3.845781 TGAGTTGCCAAGTTTCTCTCT 57.154 42.857 0.00 0.00 0.00 3.10
4337 4507 4.525912 AAACTTCCATCAATGAGTTGCC 57.474 40.909 0.00 0.00 35.26 4.52
4405 4576 8.602472 TTCCCATAATGCCTATTAAACTTGTT 57.398 30.769 0.00 0.00 32.80 2.83
4523 4694 9.515226 TTCTGGAAGTGCACTAATAAAACTAAT 57.485 29.630 22.01 0.00 33.76 1.73
4524 4695 8.911918 TTCTGGAAGTGCACTAATAAAACTAA 57.088 30.769 22.01 3.49 33.76 2.24
4525 4696 9.162764 GATTCTGGAAGTGCACTAATAAAACTA 57.837 33.333 22.01 0.91 33.76 2.24
4526 4697 7.885399 AGATTCTGGAAGTGCACTAATAAAACT 59.115 33.333 22.01 11.86 33.76 2.66
4527 4698 8.045176 AGATTCTGGAAGTGCACTAATAAAAC 57.955 34.615 22.01 9.89 33.76 2.43
4528 4699 8.635765 AAGATTCTGGAAGTGCACTAATAAAA 57.364 30.769 22.01 12.57 33.76 1.52
4529 4700 9.162764 GTAAGATTCTGGAAGTGCACTAATAAA 57.837 33.333 22.01 11.50 33.76 1.40
4530 4701 8.318412 TGTAAGATTCTGGAAGTGCACTAATAA 58.682 33.333 22.01 10.78 33.76 1.40
4531 4702 7.847096 TGTAAGATTCTGGAAGTGCACTAATA 58.153 34.615 22.01 8.20 33.76 0.98
4532 4703 6.711277 TGTAAGATTCTGGAAGTGCACTAAT 58.289 36.000 22.01 15.55 33.76 1.73
4533 4704 6.109156 TGTAAGATTCTGGAAGTGCACTAA 57.891 37.500 22.01 10.85 33.76 2.24
4544 4715 8.045507 AGCATGGATGTATATGTAAGATTCTGG 58.954 37.037 0.00 0.00 0.00 3.86
4618 4935 4.331992 ACATCAGACGAAGCATCAAGATTG 59.668 41.667 0.00 0.00 0.00 2.67
4721 5038 5.126067 AGGAGTTGTTGATCCCAATATTCG 58.874 41.667 0.00 0.00 36.14 3.34
4728 5045 4.164221 GGAAGATAGGAGTTGTTGATCCCA 59.836 45.833 0.00 0.00 36.14 4.37
4732 5049 3.197766 TGCGGAAGATAGGAGTTGTTGAT 59.802 43.478 0.00 0.00 0.00 2.57
4747 5064 1.817099 CAGCTTAGGCCTGCGGAAG 60.817 63.158 17.99 12.38 39.73 3.46
4751 5068 2.515523 ATGCAGCTTAGGCCTGCG 60.516 61.111 17.99 7.19 41.75 5.18
4755 5072 1.876156 GATACACATGCAGCTTAGGCC 59.124 52.381 0.00 0.00 39.73 5.19
4801 5118 9.036980 GGAGGTCATGTAAATATAGTACTGGAT 57.963 37.037 5.39 0.00 0.00 3.41
4833 5150 7.308782 ACTTGTCAGAAAGAACTGTTGTTAG 57.691 36.000 3.17 0.00 38.79 2.34
4889 5206 9.739276 ATGAGGTTTTCTGATGAACTGTTATTA 57.261 29.630 0.00 0.00 31.02 0.98
5072 5393 2.267961 GCCCTACAGAACCCACCG 59.732 66.667 0.00 0.00 0.00 4.94
5306 5636 5.006261 CGATTATACAAGCCATGAAACGTCA 59.994 40.000 0.00 0.00 38.41 4.35
5512 5842 4.584743 AGAAGAGGTTGTTCCCATCAAAAC 59.415 41.667 0.00 0.00 36.75 2.43
5642 10313 8.860088 GCCAGGGATTAAATCACAGTTTATTAT 58.140 33.333 0.00 0.00 34.29 1.28
5652 10323 5.437060 TCAGTAAGCCAGGGATTAAATCAC 58.563 41.667 0.00 0.00 0.00 3.06
5657 10328 4.703897 CGAATCAGTAAGCCAGGGATTAA 58.296 43.478 0.00 0.00 0.00 1.40
5667 10338 3.919804 TGCAAAAATGCGAATCAGTAAGC 59.080 39.130 0.00 0.00 37.69 3.09
5668 10339 5.164061 GGTTGCAAAAATGCGAATCAGTAAG 60.164 40.000 0.00 0.00 37.69 2.34
5686 10358 2.016604 GCCAAGTCATATCCGGTTGCA 61.017 52.381 0.00 0.00 0.00 4.08
5695 10367 8.199449 CAGTTTATTCAATTGGCCAAGTCATAT 58.801 33.333 24.94 15.21 0.00 1.78
5750 10422 0.107643 TTCATGGACTTGTGGCGTCA 59.892 50.000 0.00 0.00 33.11 4.35
5760 10432 1.341383 GGCCACTGGAATTCATGGACT 60.341 52.381 20.92 0.00 37.27 3.85
5889 10896 2.983192 TGGTCCCAGAGGTTGTAATTCA 59.017 45.455 0.00 0.00 0.00 2.57
5898 10905 1.062488 AACAGCTTGGTCCCAGAGGT 61.062 55.000 0.00 0.00 0.00 3.85
5899 10906 0.111253 AAACAGCTTGGTCCCAGAGG 59.889 55.000 0.00 0.00 0.00 3.69
5900 10907 1.242076 CAAACAGCTTGGTCCCAGAG 58.758 55.000 0.00 0.00 0.00 3.35
5902 10909 2.270352 TACAAACAGCTTGGTCCCAG 57.730 50.000 0.00 0.00 39.56 4.45
5903 10910 2.173782 TCTTACAAACAGCTTGGTCCCA 59.826 45.455 0.00 0.00 39.56 4.37
5904 10911 2.858745 TCTTACAAACAGCTTGGTCCC 58.141 47.619 0.00 0.00 39.56 4.46
5905 10912 3.821033 ACATCTTACAAACAGCTTGGTCC 59.179 43.478 0.00 0.00 39.56 4.46
5906 10913 5.438761 AACATCTTACAAACAGCTTGGTC 57.561 39.130 0.00 0.00 39.56 4.02
5907 10914 5.852282 AAACATCTTACAAACAGCTTGGT 57.148 34.783 0.00 0.00 39.56 3.67
5908 10915 6.509997 GCAAAAACATCTTACAAACAGCTTGG 60.510 38.462 0.00 0.00 39.56 3.61
5909 10916 6.035866 TGCAAAAACATCTTACAAACAGCTTG 59.964 34.615 0.00 0.00 41.19 4.01
5910 10917 6.105333 TGCAAAAACATCTTACAAACAGCTT 58.895 32.000 0.00 0.00 0.00 3.74
5911 10918 5.659463 TGCAAAAACATCTTACAAACAGCT 58.341 33.333 0.00 0.00 0.00 4.24
5912 10919 5.964887 TGCAAAAACATCTTACAAACAGC 57.035 34.783 0.00 0.00 0.00 4.40
5913 10920 6.256321 AGCTTGCAAAAACATCTTACAAACAG 59.744 34.615 0.00 0.00 0.00 3.16
5914 10921 6.035866 CAGCTTGCAAAAACATCTTACAAACA 59.964 34.615 0.00 0.00 0.00 2.83
5915 10922 6.035975 ACAGCTTGCAAAAACATCTTACAAAC 59.964 34.615 0.00 0.00 0.00 2.93
5916 10923 6.105333 ACAGCTTGCAAAAACATCTTACAAA 58.895 32.000 0.00 0.00 0.00 2.83
5917 10924 5.659463 ACAGCTTGCAAAAACATCTTACAA 58.341 33.333 0.00 0.00 0.00 2.41
5918 10925 5.261209 ACAGCTTGCAAAAACATCTTACA 57.739 34.783 0.00 0.00 0.00 2.41
5919 10926 6.588348 AAACAGCTTGCAAAAACATCTTAC 57.412 33.333 0.00 0.00 0.00 2.34
5920 10927 8.351495 CTAAAACAGCTTGCAAAAACATCTTA 57.649 30.769 0.00 0.00 0.00 2.10
5921 10928 7.237920 CTAAAACAGCTTGCAAAAACATCTT 57.762 32.000 0.00 0.00 0.00 2.40
5922 10929 6.833342 CTAAAACAGCTTGCAAAAACATCT 57.167 33.333 0.00 0.00 0.00 2.90
5950 10957 8.944138 CCCCTCCCATAATATAAAATGGTTTTT 58.056 33.333 13.08 0.00 40.97 1.94
5951 10958 7.515861 CCCCCTCCCATAATATAAAATGGTTTT 59.484 37.037 13.08 0.00 40.97 2.43
5952 10959 7.022496 CCCCCTCCCATAATATAAAATGGTTT 58.978 38.462 13.08 0.00 40.97 3.27
5953 10960 6.339651 TCCCCCTCCCATAATATAAAATGGTT 59.660 38.462 13.08 0.00 40.97 3.67
5954 10961 5.866352 TCCCCCTCCCATAATATAAAATGGT 59.134 40.000 13.08 0.00 40.97 3.55
5955 10962 6.010739 ACTCCCCCTCCCATAATATAAAATGG 60.011 42.308 8.95 8.95 42.02 3.16
5956 10963 7.044496 ACTCCCCCTCCCATAATATAAAATG 57.956 40.000 0.00 0.00 0.00 2.32
5957 10964 8.791749 CATACTCCCCCTCCCATAATATAAAAT 58.208 37.037 0.00 0.00 0.00 1.82
5958 10965 7.970641 TCATACTCCCCCTCCCATAATATAAAA 59.029 37.037 0.00 0.00 0.00 1.52
5959 10966 7.501314 TCATACTCCCCCTCCCATAATATAAA 58.499 38.462 0.00 0.00 0.00 1.40
5960 10967 7.076037 TCATACTCCCCCTCCCATAATATAA 57.924 40.000 0.00 0.00 0.00 0.98
5961 10968 6.700532 TCATACTCCCCCTCCCATAATATA 57.299 41.667 0.00 0.00 0.00 0.86
5962 10969 5.584864 TCATACTCCCCCTCCCATAATAT 57.415 43.478 0.00 0.00 0.00 1.28
5963 10970 5.584864 ATCATACTCCCCCTCCCATAATA 57.415 43.478 0.00 0.00 0.00 0.98
5964 10971 3.963525 TCATACTCCCCCTCCCATAAT 57.036 47.619 0.00 0.00 0.00 1.28
5965 10972 3.963525 ATCATACTCCCCCTCCCATAA 57.036 47.619 0.00 0.00 0.00 1.90
5966 10973 3.963525 AATCATACTCCCCCTCCCATA 57.036 47.619 0.00 0.00 0.00 2.74
5967 10974 2.843909 AATCATACTCCCCCTCCCAT 57.156 50.000 0.00 0.00 0.00 4.00
5968 10975 2.605825 AAATCATACTCCCCCTCCCA 57.394 50.000 0.00 0.00 0.00 4.37
5969 10976 4.601857 TCATTAAATCATACTCCCCCTCCC 59.398 45.833 0.00 0.00 0.00 4.30
5970 10977 5.310857 AGTCATTAAATCATACTCCCCCTCC 59.689 44.000 0.00 0.00 0.00 4.30
5971 10978 6.183361 ACAGTCATTAAATCATACTCCCCCTC 60.183 42.308 0.00 0.00 0.00 4.30
5972 10979 5.672194 ACAGTCATTAAATCATACTCCCCCT 59.328 40.000 0.00 0.00 0.00 4.79
5973 10980 5.941788 ACAGTCATTAAATCATACTCCCCC 58.058 41.667 0.00 0.00 0.00 5.40
5974 10981 8.211629 ACTTACAGTCATTAAATCATACTCCCC 58.788 37.037 0.00 0.00 0.00 4.81
5975 10982 9.262358 GACTTACAGTCATTAAATCATACTCCC 57.738 37.037 0.00 0.00 44.45 4.30
6005 11029 3.923461 GTCACATCTACAGTGTTCTGCTC 59.077 47.826 0.00 0.00 44.77 4.26
6061 11085 4.779082 GCGTAGTTGATTTATCTGTGCACG 60.779 45.833 13.13 7.36 0.00 5.34
6076 11102 1.135689 GTCTGGCAATTGGCGTAGTTG 60.136 52.381 25.00 11.66 46.16 3.16
6099 11125 2.006169 TGTATAGTTGTGGCGCATGTG 58.994 47.619 10.83 0.66 0.00 3.21
6100 11126 2.006888 GTGTATAGTTGTGGCGCATGT 58.993 47.619 10.83 0.00 0.00 3.21
6101 11127 2.006169 TGTGTATAGTTGTGGCGCATG 58.994 47.619 10.83 0.00 0.00 4.06
6125 11151 1.145156 CGGGTTATGGGCATCGACA 59.855 57.895 0.00 0.00 0.00 4.35
6126 11152 0.179067 TTCGGGTTATGGGCATCGAC 60.179 55.000 0.00 0.00 0.00 4.20
6127 11153 0.762418 ATTCGGGTTATGGGCATCGA 59.238 50.000 0.00 0.00 0.00 3.59
6128 11154 1.266718 CAATTCGGGTTATGGGCATCG 59.733 52.381 0.00 0.00 0.00 3.84
6130 11156 2.031120 CACAATTCGGGTTATGGGCAT 58.969 47.619 0.00 0.00 0.00 4.40
6131 11157 1.468985 CACAATTCGGGTTATGGGCA 58.531 50.000 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.