Multiple sequence alignment - TraesCS3A01G349400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G349400 chr3A 100.000 7336 0 0 1 7336 598541722 598549057 0.000000e+00 13548.0
1 TraesCS3A01G349400 chr3A 87.952 913 84 13 1 900 530942909 530942010 0.000000e+00 1053.0
2 TraesCS3A01G349400 chr3A 97.143 70 2 0 3130 3199 598544777 598544846 1.290000e-22 119.0
3 TraesCS3A01G349400 chr3A 97.143 70 2 0 3056 3125 598544851 598544920 1.290000e-22 119.0
4 TraesCS3A01G349400 chr3A 100.000 33 0 0 3130 3162 534991168 534991200 2.210000e-05 62.1
5 TraesCS3A01G349400 chr3B 98.942 3402 32 1 3042 6439 602298320 602301721 0.000000e+00 6080.0
6 TraesCS3A01G349400 chr3B 98.850 2261 20 4 942 3199 602295742 602297999 0.000000e+00 4026.0
7 TraesCS3A01G349400 chr3B 95.684 950 32 6 1 948 602285740 602286682 0.000000e+00 1519.0
8 TraesCS3A01G349400 chr3B 89.480 808 69 11 95 895 238829294 238830092 0.000000e+00 1007.0
9 TraesCS3A01G349400 chr3B 93.000 600 32 7 6547 7137 602301722 602302320 0.000000e+00 867.0
10 TraesCS3A01G349400 chr3B 98.977 391 4 0 3055 3445 602297929 602298319 0.000000e+00 701.0
11 TraesCS3A01G349400 chr3B 81.759 307 50 4 591 893 95572188 95572492 1.220000e-62 252.0
12 TraesCS3A01G349400 chr3B 91.667 120 6 1 6435 6550 70295983 70295864 5.890000e-36 163.0
13 TraesCS3A01G349400 chr3B 89.344 122 6 3 7215 7336 602302406 602302520 5.930000e-31 147.0
14 TraesCS3A01G349400 chr3B 97.183 71 2 0 3055 3125 602298003 602298073 3.590000e-23 121.0
15 TraesCS3A01G349400 chr3B 97.183 71 2 0 3055 3125 602298407 602298477 3.590000e-23 121.0
16 TraesCS3A01G349400 chr3B 97.143 70 2 0 3130 3199 602297856 602297925 1.290000e-22 119.0
17 TraesCS3A01G349400 chr3B 97.143 70 2 0 3130 3199 602298334 602298403 1.290000e-22 119.0
18 TraesCS3A01G349400 chr3B 84.884 86 6 5 5062 5141 417495551 417495635 6.100000e-11 80.5
19 TraesCS3A01G349400 chr3D 93.805 2938 114 20 4192 7095 455860996 455863899 0.000000e+00 4355.0
20 TraesCS3A01G349400 chr3D 93.879 2222 84 19 951 3124 455853282 455855499 0.000000e+00 3302.0
21 TraesCS3A01G349400 chr3D 90.313 1022 67 13 3130 4135 455855431 455856436 0.000000e+00 1310.0
22 TraesCS3A01G349400 chr3D 89.533 535 45 8 165 694 481063088 481063616 0.000000e+00 667.0
23 TraesCS3A01G349400 chr3D 91.632 239 12 4 7098 7336 455863941 455864171 2.550000e-84 324.0
24 TraesCS3A01G349400 chr3D 93.478 184 12 0 2900 3083 422517610 422517793 2.610000e-69 274.0
25 TraesCS3A01G349400 chr3D 91.237 194 16 1 2900 3092 422517803 422517996 5.640000e-66 263.0
26 TraesCS3A01G349400 chr3D 96.774 62 2 0 4136 4197 455856718 455856779 3.620000e-18 104.0
27 TraesCS3A01G349400 chr3D 97.059 34 0 1 3129 3162 415579837 415579805 1.000000e-03 56.5
28 TraesCS3A01G349400 chr6B 91.381 905 57 11 1 895 643143799 643144692 0.000000e+00 1219.0
29 TraesCS3A01G349400 chr6B 92.896 183 13 0 2903 3085 225525368 225525550 4.360000e-67 267.0
30 TraesCS3A01G349400 chr6B 89.764 127 9 1 6433 6555 248362226 248362100 7.620000e-35 159.0
31 TraesCS3A01G349400 chr4B 86.329 907 101 14 1 893 426106869 426105972 0.000000e+00 966.0
32 TraesCS3A01G349400 chr4B 89.516 124 7 3 6432 6551 16060963 16060842 1.270000e-32 152.0
33 TraesCS3A01G349400 chr2B 85.932 917 104 13 1 903 579577683 579578588 0.000000e+00 955.0
34 TraesCS3A01G349400 chr2B 88.760 258 26 2 639 893 150889094 150889351 5.530000e-81 313.0
35 TraesCS3A01G349400 chr2B 92.935 184 13 0 2902 3085 140765929 140766112 1.210000e-67 268.0
36 TraesCS3A01G349400 chr2B 82.331 266 41 5 633 895 692459069 692459331 7.410000e-55 226.0
37 TraesCS3A01G349400 chr2B 90.400 125 8 2 6429 6549 643184611 643184735 2.120000e-35 161.0
38 TraesCS3A01G349400 chr2B 77.727 220 47 2 1220 1438 86688056 86688274 4.620000e-27 134.0
39 TraesCS3A01G349400 chr6D 86.800 500 56 8 203 694 436233840 436233343 3.870000e-152 549.0
40 TraesCS3A01G349400 chr4D 91.584 202 15 2 2885 3085 482703426 482703626 2.020000e-70 278.0
41 TraesCS3A01G349400 chr4D 94.444 36 2 0 3130 3165 69650121 69650156 1.000000e-03 56.5
42 TraesCS3A01G349400 chr7A 93.011 186 11 2 2903 3086 83785017 83784832 3.370000e-68 270.0
43 TraesCS3A01G349400 chr7A 92.500 120 5 4 6434 6549 375886491 375886610 1.270000e-37 169.0
44 TraesCS3A01G349400 chr7A 78.431 153 27 5 3 152 691644573 691644722 2.180000e-15 95.3
45 TraesCS3A01G349400 chr1A 92.896 183 13 0 2902 3084 202099439 202099257 4.360000e-67 267.0
46 TraesCS3A01G349400 chr1A 78.378 296 58 5 1171 1463 491139116 491138824 3.490000e-43 187.0
47 TraesCS3A01G349400 chr1D 88.532 218 19 6 2871 3084 86918471 86918686 7.300000e-65 259.0
48 TraesCS3A01G349400 chr1D 77.027 296 62 5 1171 1463 394269249 394269541 1.640000e-36 165.0
49 TraesCS3A01G349400 chr6A 86.607 224 29 1 671 894 428388726 428388504 5.680000e-61 246.0
50 TraesCS3A01G349400 chr6A 75.472 212 36 12 4947 5148 317154622 317154417 1.010000e-13 89.8
51 TraesCS3A01G349400 chr1B 77.703 296 60 5 1171 1463 527836244 527835952 7.560000e-40 176.0
52 TraesCS3A01G349400 chr7B 90.551 127 8 1 6427 6549 383736256 383736130 1.640000e-36 165.0
53 TraesCS3A01G349400 chr7B 76.793 237 42 13 286 512 189892550 189892317 3.590000e-23 121.0
54 TraesCS3A01G349400 chr5D 91.597 119 6 4 6436 6550 492723171 492723289 2.120000e-35 161.0
55 TraesCS3A01G349400 chr5D 89.844 128 8 5 6427 6549 461071634 461071761 7.620000e-35 159.0
56 TraesCS3A01G349400 chr2D 81.026 195 35 2 1220 1413 55142749 55142556 3.540000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G349400 chr3A 598541722 598549057 7335 False 13548.000000 13548 100.000000 1 7336 1 chr3A.!!$F2 7335
1 TraesCS3A01G349400 chr3A 530942010 530942909 899 True 1053.000000 1053 87.952000 1 900 1 chr3A.!!$R1 899
2 TraesCS3A01G349400 chr3B 602285740 602286682 942 False 1519.000000 1519 95.684000 1 948 1 chr3B.!!$F4 947
3 TraesCS3A01G349400 chr3B 602295742 602302520 6778 False 1366.777778 6080 96.418333 942 7336 9 chr3B.!!$F5 6394
4 TraesCS3A01G349400 chr3B 238829294 238830092 798 False 1007.000000 1007 89.480000 95 895 1 chr3B.!!$F2 800
5 TraesCS3A01G349400 chr3D 455860996 455864171 3175 False 2339.500000 4355 92.718500 4192 7336 2 chr3D.!!$F4 3144
6 TraesCS3A01G349400 chr3D 455853282 455856779 3497 False 1572.000000 3302 93.655333 951 4197 3 chr3D.!!$F3 3246
7 TraesCS3A01G349400 chr3D 481063088 481063616 528 False 667.000000 667 89.533000 165 694 1 chr3D.!!$F1 529
8 TraesCS3A01G349400 chr6B 643143799 643144692 893 False 1219.000000 1219 91.381000 1 895 1 chr6B.!!$F2 894
9 TraesCS3A01G349400 chr4B 426105972 426106869 897 True 966.000000 966 86.329000 1 893 1 chr4B.!!$R2 892
10 TraesCS3A01G349400 chr2B 579577683 579578588 905 False 955.000000 955 85.932000 1 903 1 chr2B.!!$F4 902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 181 2.290323 ACGAGCAAGCAAATTAGGGACT 60.290 45.455 0.00 0.00 46.37 3.85 F
1306 1332 4.863925 GCGACCTGCTCCGCTCTC 62.864 72.222 0.00 0.00 46.96 3.20 F
2969 3040 0.036671 GGTCACGGGTTCGAATCCTT 60.037 55.000 24.58 13.55 40.11 3.36 F
4052 4617 1.923909 GCCCCAGACCAACCTAGGT 60.924 63.158 9.21 9.21 46.82 3.08 F
4775 5628 2.316108 TCACTGTTGGTGTCTCTGCTA 58.684 47.619 0.00 0.00 45.50 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2093 8.770828 ACCGTCAAAATATATGTTTCCTTATCG 58.229 33.333 0.00 0.00 0.00 2.92 R
3128 3677 2.125512 CAGTGCACGTAGCTCCCC 60.126 66.667 12.01 0.00 45.94 4.81 R
4611 5461 0.865769 GGCAATCCGTATGGTAAGCG 59.134 55.000 0.00 0.00 36.30 4.68 R
5658 6533 3.308878 GAACAGCGCCGCGAACATT 62.309 57.895 18.91 4.27 0.00 2.71 R
6535 7414 0.547553 GTCTCCTACTCCCTCCGTCT 59.452 60.000 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 4.583489 CGTCTATCTAGAAGGTTGGGCTAA 59.417 45.833 0.00 0.00 33.47 3.09
172 181 2.290323 ACGAGCAAGCAAATTAGGGACT 60.290 45.455 0.00 0.00 46.37 3.85
321 331 8.695284 GTCGTGCATTTAAAAATGTTAACATGA 58.305 29.630 21.46 7.03 45.77 3.07
771 794 5.121454 GGCGCCATTTGTCAATTTTTGATTA 59.879 36.000 24.80 0.00 42.47 1.75
800 823 8.862325 TTGGACTAAATCTTCACATACATTGT 57.138 30.769 0.00 0.00 39.91 2.71
928 951 9.574516 ACCTTACCAATATTCAATAAAGCCTAG 57.425 33.333 0.00 0.00 0.00 3.02
1306 1332 4.863925 GCGACCTGCTCCGCTCTC 62.864 72.222 0.00 0.00 46.96 3.20
1753 1805 7.009631 CACTAATCAGTAGTCATGTGCTGTTAC 59.990 40.741 0.00 0.00 41.37 2.50
2041 2093 6.203338 TCCACGAAAACCACTTAACTATTGTC 59.797 38.462 0.00 0.00 0.00 3.18
2897 2952 7.966246 TTGCATTTTTGCTTTCTATGTCAAT 57.034 28.000 0.00 0.00 35.49 2.57
2969 3040 0.036671 GGTCACGGGTTCGAATCCTT 60.037 55.000 24.58 13.55 40.11 3.36
3128 3677 4.396166 CCTACTGTTTATCTGCTTTGGGTG 59.604 45.833 0.00 0.00 0.00 4.61
3890 4454 5.717078 ATTCTTCCTCACACGTACAGTAA 57.283 39.130 0.00 0.00 0.00 2.24
3950 4514 6.442513 AGGTCAAATTATTAGCACTTGAGC 57.557 37.500 4.58 4.58 42.16 4.26
4052 4617 1.923909 GCCCCAGACCAACCTAGGT 60.924 63.158 9.21 9.21 46.82 3.08
4082 4647 9.545105 ACATGATAAACAATGTCAAACAAATGT 57.455 25.926 0.00 0.00 34.89 2.71
4611 5461 4.293415 CAAAACTTGCATCACTCTGTTCC 58.707 43.478 0.00 0.00 0.00 3.62
4738 5591 5.045797 GGGGTGTAGGTTCTTTGATACTCTT 60.046 44.000 0.00 0.00 0.00 2.85
4775 5628 2.316108 TCACTGTTGGTGTCTCTGCTA 58.684 47.619 0.00 0.00 45.50 3.49
5060 5928 8.999431 TCGCTCAAAGTTATTCTAGTTTCAAAT 58.001 29.630 0.00 0.00 0.00 2.32
5658 6533 2.373335 TTCTTTGCTGCAGGGGTTTA 57.627 45.000 17.12 0.00 0.00 2.01
6491 7370 4.513442 TGGATGTATCACCAAGTTAGTGC 58.487 43.478 0.00 0.00 35.14 4.40
6496 7375 6.791867 TGTATCACCAAGTTAGTGCTAGAT 57.208 37.500 0.00 0.00 35.14 1.98
6497 7376 7.891498 TGTATCACCAAGTTAGTGCTAGATA 57.109 36.000 0.00 0.00 35.14 1.98
6519 7398 8.049117 AGATACATCCATTTGAAAGACAAGCTA 58.951 33.333 0.00 0.00 39.77 3.32
6528 7407 3.244561 TGAAAGACAAGCTAGGGACAAGG 60.245 47.826 0.00 0.00 0.00 3.61
6535 7414 2.621070 AGCTAGGGACAAGGTTTCTCA 58.379 47.619 0.00 0.00 0.00 3.27
6684 7564 4.265904 TGAAGTTGTCTTATTGGCTCGA 57.734 40.909 0.00 0.00 33.64 4.04
6767 7651 5.321102 TGTTATGTTGGCAGGAGTTTACAT 58.679 37.500 4.37 4.37 0.00 2.29
6787 7671 1.544917 ATGGAGTTGGGAGGCCCTT 60.545 57.895 0.00 0.00 45.70 3.95
6852 7737 9.131791 TGATTGTGTGTGCTCTATAGAATAGTA 57.868 33.333 3.57 0.00 0.00 1.82
6860 7745 7.066645 TGTGCTCTATAGAATAGTACGTGTTGT 59.933 37.037 3.57 0.00 0.00 3.32
6876 7761 2.486203 TGTTGTCAAGTGTTGTGTGGTC 59.514 45.455 0.00 0.00 0.00 4.02
6906 7791 1.072965 AGAAAAGCTCCAGTGTCAGGG 59.927 52.381 0.00 0.00 0.00 4.45
6929 7814 0.031178 GCAAACAGCTGGTGAACTGG 59.969 55.000 19.93 0.00 41.15 4.00
6972 7857 4.803452 TCATCAGGGTTCTTTGGTTTCTT 58.197 39.130 0.00 0.00 0.00 2.52
6977 7862 1.611977 GGTTCTTTGGTTTCTTCGGGG 59.388 52.381 0.00 0.00 0.00 5.73
6981 7866 2.953648 TCTTTGGTTTCTTCGGGGTTTC 59.046 45.455 0.00 0.00 0.00 2.78
6982 7867 1.694844 TTGGTTTCTTCGGGGTTTCC 58.305 50.000 0.00 0.00 0.00 3.13
6987 7872 3.243636 GGTTTCTTCGGGGTTTCCTTTTC 60.244 47.826 0.00 0.00 0.00 2.29
7003 7890 9.186323 GTTTCCTTTTCTTGAAAAAGCTATCTC 57.814 33.333 9.41 0.00 36.26 2.75
7017 7904 5.965033 AGCTATCTCTTTCTTGATTCCCA 57.035 39.130 0.00 0.00 0.00 4.37
7034 7921 1.203052 CCCACACCTCAAATGCACATC 59.797 52.381 0.00 0.00 0.00 3.06
7036 7923 2.494471 CCACACCTCAAATGCACATCAT 59.506 45.455 0.00 0.00 36.87 2.45
7037 7924 3.428452 CCACACCTCAAATGCACATCATC 60.428 47.826 0.00 0.00 33.40 2.92
7077 7964 4.944619 TCATCTGATCCACTATGGTCAC 57.055 45.455 0.00 0.00 39.03 3.67
7095 7982 2.299013 TCACGGTCACTCTGTTTGCTAT 59.701 45.455 0.00 0.00 32.67 2.97
7123 8049 5.469479 AGCTTTGTATTGTACATTTGCACC 58.531 37.500 0.00 0.00 38.68 5.01
7138 8064 4.968812 TTGCACCACATAGTTGATCATG 57.031 40.909 0.00 0.00 0.00 3.07
7143 8069 3.523157 ACCACATAGTTGATCATGGTGGA 59.477 43.478 25.57 0.00 38.99 4.02
7151 8077 2.170166 TGATCATGGTGGAAAACTGCC 58.830 47.619 0.00 0.00 0.00 4.85
7158 8084 0.387239 GTGGAAAACTGCCGACATGC 60.387 55.000 0.00 0.00 0.00 4.06
7160 8086 0.598065 GGAAAACTGCCGACATGCTT 59.402 50.000 0.00 0.00 0.00 3.91
7245 8217 5.344207 TCACTAGATCATGTCGTCGTATG 57.656 43.478 0.00 0.00 0.00 2.39
7246 8218 4.814771 TCACTAGATCATGTCGTCGTATGT 59.185 41.667 0.00 1.81 0.00 2.29
7247 8219 5.050295 TCACTAGATCATGTCGTCGTATGTC 60.050 44.000 0.00 8.34 0.00 3.06
7248 8220 3.254827 AGATCATGTCGTCGTATGTCG 57.745 47.619 0.00 0.00 41.41 4.35
7249 8221 2.612672 AGATCATGTCGTCGTATGTCGT 59.387 45.455 0.00 2.01 40.80 4.34
7250 8222 3.805971 AGATCATGTCGTCGTATGTCGTA 59.194 43.478 0.00 0.00 40.80 3.43
7251 8223 4.451435 AGATCATGTCGTCGTATGTCGTAT 59.549 41.667 0.00 0.00 40.80 3.06
7256 8228 3.805971 TGTCGTCGTATGTCGTATCATCT 59.194 43.478 1.64 0.00 40.80 2.90
7274 8246 1.833630 TCTTGGCAGGATCTACAGGTG 59.166 52.381 0.00 0.00 0.00 4.00
7286 8258 2.158219 TCTACAGGTGAGGAAGGGTTGA 60.158 50.000 0.00 0.00 0.00 3.18
7295 8267 0.666577 GGAAGGGTTGAGTGTCGACG 60.667 60.000 11.62 0.00 31.46 5.12
7306 8278 2.337246 TGTCGACGGCCTTCATCGA 61.337 57.895 11.62 11.54 42.27 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.601903 CAACATACGCTGGTGTTGTGT 59.398 47.619 13.51 0.00 46.17 3.72
771 794 7.168219 TGTATGTGAAGATTTAGTCCAAAGCT 58.832 34.615 0.00 0.00 44.65 3.74
829 852 8.862325 TGTGATGATTTAGTCCACAAACTTAT 57.138 30.769 0.00 0.00 35.16 1.73
880 903 2.110901 ACATGAAGAGGCAAGAGCAG 57.889 50.000 0.00 0.00 44.61 4.24
2041 2093 8.770828 ACCGTCAAAATATATGTTTCCTTATCG 58.229 33.333 0.00 0.00 0.00 2.92
2177 2229 5.892568 ACTAGACATTAGAATGACGTCACC 58.107 41.667 22.71 15.70 39.67 4.02
3128 3677 2.125512 CAGTGCACGTAGCTCCCC 60.126 66.667 12.01 0.00 45.94 4.81
3890 4454 5.808366 TGTTCTCTACTGGAATGTGAAGT 57.192 39.130 0.00 0.00 0.00 3.01
3950 4514 9.551734 TCATCAGATAGTTGACTAATTTGATGG 57.448 33.333 24.00 15.14 40.37 3.51
4052 4617 6.205658 TGTTTGACATTGTTTATCATGTCCGA 59.794 34.615 9.27 0.00 41.81 4.55
4082 4647 2.698797 GGAATCCTGAGGACGATGGTAA 59.301 50.000 1.77 0.00 32.98 2.85
4611 5461 0.865769 GGCAATCCGTATGGTAAGCG 59.134 55.000 0.00 0.00 36.30 4.68
4775 5628 8.321353 TCTTTGATGAACTGTACTAACATCCAT 58.679 33.333 14.80 0.00 37.23 3.41
5556 6427 8.132995 ACAAAATTACAAACTTCTAGGTTTCCG 58.867 33.333 0.00 0.00 37.32 4.30
5658 6533 3.308878 GAACAGCGCCGCGAACATT 62.309 57.895 18.91 4.27 0.00 2.71
6491 7370 8.341173 GCTTGTCTTTCAAATGGATGTATCTAG 58.659 37.037 0.00 0.00 35.48 2.43
6496 7375 6.599244 CCTAGCTTGTCTTTCAAATGGATGTA 59.401 38.462 0.00 0.00 35.48 2.29
6497 7376 5.416952 CCTAGCTTGTCTTTCAAATGGATGT 59.583 40.000 0.00 0.00 35.48 3.06
6519 7398 1.344763 CGTCTGAGAAACCTTGTCCCT 59.655 52.381 0.00 0.00 0.00 4.20
6528 7407 1.258676 ACTCCCTCCGTCTGAGAAAC 58.741 55.000 0.00 0.00 44.42 2.78
6535 7414 0.547553 GTCTCCTACTCCCTCCGTCT 59.452 60.000 0.00 0.00 0.00 4.18
6696 7576 7.044181 TCAACCATCACAATTTAAAGCAACAA 58.956 30.769 0.00 0.00 0.00 2.83
6767 7651 2.308722 GGGCCTCCCAACTCCATGA 61.309 63.158 0.84 0.00 44.65 3.07
6787 7671 9.177608 AGAATAAAAAGCATGCATACAAGTAGA 57.822 29.630 21.98 0.00 0.00 2.59
6852 7737 2.095969 CACACAACACTTGACAACACGT 60.096 45.455 0.00 0.00 0.00 4.49
6860 7745 1.472552 CCTCGACCACACAACACTTGA 60.473 52.381 0.00 0.00 0.00 3.02
6876 7761 2.289072 TGGAGCTTTTCTTCAGACCTCG 60.289 50.000 0.00 0.00 0.00 4.63
6929 7814 2.490903 AGATGTGCAACTGATTTCTGCC 59.509 45.455 0.00 0.00 38.04 4.85
6972 7857 3.300239 TTCAAGAAAAGGAAACCCCGA 57.700 42.857 0.00 0.00 40.87 5.14
6977 7862 9.186323 GAGATAGCTTTTTCAAGAAAAGGAAAC 57.814 33.333 18.02 6.86 40.83 2.78
6981 7866 9.404348 GAAAGAGATAGCTTTTTCAAGAAAAGG 57.596 33.333 16.61 11.63 42.03 3.11
7003 7890 3.754965 TGAGGTGTGGGAATCAAGAAAG 58.245 45.455 0.00 0.00 0.00 2.62
7017 7904 2.756760 GGATGATGTGCATTTGAGGTGT 59.243 45.455 0.00 0.00 37.34 4.16
7034 7921 3.920231 TCAACAGATCAAGGAGGGATG 57.080 47.619 0.00 0.00 0.00 3.51
7036 7923 3.845992 TGAATCAACAGATCAAGGAGGGA 59.154 43.478 0.00 0.00 0.00 4.20
7037 7924 4.226427 TGAATCAACAGATCAAGGAGGG 57.774 45.455 0.00 0.00 0.00 4.30
7077 7964 3.067106 ACAATAGCAAACAGAGTGACCG 58.933 45.455 0.00 0.00 0.00 4.79
7095 7982 8.138074 TGCAAATGTACAATACAAAGCTAACAA 58.862 29.630 0.00 0.00 42.76 2.83
7123 8049 6.151648 AGTTTTCCACCATGATCAACTATGTG 59.848 38.462 0.00 3.19 0.00 3.21
7138 8064 0.240945 CATGTCGGCAGTTTTCCACC 59.759 55.000 0.00 0.00 0.00 4.61
7143 8069 1.317613 TCAAGCATGTCGGCAGTTTT 58.682 45.000 0.00 0.00 35.83 2.43
7151 8077 3.885484 ACAGACTTTTCAAGCATGTCG 57.115 42.857 0.00 0.00 33.40 4.35
7158 8084 7.012327 TGGTGTAGAATGAACAGACTTTTCAAG 59.988 37.037 8.07 0.00 36.57 3.02
7160 8086 6.353323 TGGTGTAGAATGAACAGACTTTTCA 58.647 36.000 6.51 6.51 37.38 2.69
7182 8108 2.126467 CTGCAATTGTTGGTCGTTTGG 58.874 47.619 7.40 0.00 0.00 3.28
7245 8217 2.890808 TCCTGCCAAGATGATACGAC 57.109 50.000 0.00 0.00 0.00 4.34
7246 8218 3.234353 AGATCCTGCCAAGATGATACGA 58.766 45.455 0.00 0.00 0.00 3.43
7247 8219 3.674528 AGATCCTGCCAAGATGATACG 57.325 47.619 0.00 0.00 0.00 3.06
7248 8220 5.474578 TGTAGATCCTGCCAAGATGATAC 57.525 43.478 0.00 0.00 0.00 2.24
7249 8221 4.529769 CCTGTAGATCCTGCCAAGATGATA 59.470 45.833 0.00 0.00 0.00 2.15
7250 8222 3.327172 CCTGTAGATCCTGCCAAGATGAT 59.673 47.826 0.00 0.00 0.00 2.45
7251 8223 2.702478 CCTGTAGATCCTGCCAAGATGA 59.298 50.000 0.00 0.00 0.00 2.92
7256 8228 1.833630 CTCACCTGTAGATCCTGCCAA 59.166 52.381 0.00 0.00 0.00 4.52
7274 8246 0.966920 TCGACACTCAACCCTTCCTC 59.033 55.000 0.00 0.00 0.00 3.71
7286 8258 1.215647 GATGAAGGCCGTCGACACT 59.784 57.895 17.16 7.48 0.00 3.55
7295 8267 1.478510 TGAGAAGTCTCGATGAAGGCC 59.521 52.381 0.00 0.00 45.72 5.19
7306 8278 2.300437 GGCCACTGTACTTGAGAAGTCT 59.700 50.000 0.00 0.00 41.77 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.