Multiple sequence alignment - TraesCS3A01G349200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G349200 chr3A 100.000 2747 0 0 1 2747 597918563 597921309 0.000000e+00 5073.0
1 TraesCS3A01G349200 chr3B 89.805 2050 84 47 742 2747 598989187 598991155 0.000000e+00 2512.0
2 TraesCS3A01G349200 chr3B 91.860 86 7 0 416 501 598987399 598987484 1.340000e-23 121.0
3 TraesCS3A01G349200 chr3D 91.213 1673 65 41 1100 2747 455716160 455717775 0.000000e+00 2200.0
4 TraesCS3A01G349200 chr3D 85.674 712 56 29 412 1096 455715179 455715871 0.000000e+00 708.0
5 TraesCS3A01G349200 chr3D 83.208 399 43 10 3 398 455694117 455694494 7.280000e-91 344.0
6 TraesCS3A01G349200 chr2B 75.362 138 26 6 1589 1722 445497937 445498070 2.950000e-05 60.2
7 TraesCS3A01G349200 chr2D 100.000 29 0 0 1694 1722 375257796 375257824 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G349200 chr3A 597918563 597921309 2746 False 5073.0 5073 100.0000 1 2747 1 chr3A.!!$F1 2746
1 TraesCS3A01G349200 chr3B 598987399 598991155 3756 False 1316.5 2512 90.8325 416 2747 2 chr3B.!!$F1 2331
2 TraesCS3A01G349200 chr3D 455715179 455717775 2596 False 1454.0 2200 88.4435 412 2747 2 chr3D.!!$F2 2335

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 405 0.252197 GCCGTTACTCCAAGGGTGAT 59.748 55.0 0.0 0.0 42.99 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2274 4084 1.181786 CAAACCACACACACCAACCT 58.818 50.0 0.0 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.963676 GCAACTGCACCATCAAACA 57.036 47.368 0.00 0.00 41.59 2.83
29 30 2.443887 GCAACTGCACCATCAAACAT 57.556 45.000 0.00 0.00 41.59 2.71
30 31 3.574284 GCAACTGCACCATCAAACATA 57.426 42.857 0.00 0.00 41.59 2.29
31 32 3.911868 GCAACTGCACCATCAAACATAA 58.088 40.909 0.00 0.00 41.59 1.90
32 33 3.674753 GCAACTGCACCATCAAACATAAC 59.325 43.478 0.00 0.00 41.59 1.89
33 34 4.236935 CAACTGCACCATCAAACATAACC 58.763 43.478 0.00 0.00 0.00 2.85
34 35 3.495331 ACTGCACCATCAAACATAACCA 58.505 40.909 0.00 0.00 0.00 3.67
35 36 3.894427 ACTGCACCATCAAACATAACCAA 59.106 39.130 0.00 0.00 0.00 3.67
36 37 4.343526 ACTGCACCATCAAACATAACCAAA 59.656 37.500 0.00 0.00 0.00 3.28
37 38 4.880759 TGCACCATCAAACATAACCAAAG 58.119 39.130 0.00 0.00 0.00 2.77
38 39 3.679502 GCACCATCAAACATAACCAAAGC 59.320 43.478 0.00 0.00 0.00 3.51
39 40 4.798924 GCACCATCAAACATAACCAAAGCA 60.799 41.667 0.00 0.00 0.00 3.91
40 41 5.295950 CACCATCAAACATAACCAAAGCAA 58.704 37.500 0.00 0.00 0.00 3.91
41 42 5.406175 CACCATCAAACATAACCAAAGCAAG 59.594 40.000 0.00 0.00 0.00 4.01
42 43 4.389687 CCATCAAACATAACCAAAGCAAGC 59.610 41.667 0.00 0.00 0.00 4.01
43 44 3.988819 TCAAACATAACCAAAGCAAGCC 58.011 40.909 0.00 0.00 0.00 4.35
44 45 3.640967 TCAAACATAACCAAAGCAAGCCT 59.359 39.130 0.00 0.00 0.00 4.58
45 46 4.100808 TCAAACATAACCAAAGCAAGCCTT 59.899 37.500 0.00 0.00 34.51 4.35
46 47 4.687901 AACATAACCAAAGCAAGCCTTT 57.312 36.364 0.00 0.00 44.45 3.11
47 48 5.799827 AACATAACCAAAGCAAGCCTTTA 57.200 34.783 0.00 0.00 41.75 1.85
48 49 5.134202 ACATAACCAAAGCAAGCCTTTAC 57.866 39.130 0.00 0.00 41.75 2.01
49 50 4.832823 ACATAACCAAAGCAAGCCTTTACT 59.167 37.500 0.00 0.00 41.75 2.24
50 51 5.048013 ACATAACCAAAGCAAGCCTTTACTC 60.048 40.000 0.00 0.00 41.75 2.59
51 52 1.880027 ACCAAAGCAAGCCTTTACTCG 59.120 47.619 0.00 0.00 41.75 4.18
52 53 2.151202 CCAAAGCAAGCCTTTACTCGA 58.849 47.619 0.00 0.00 41.75 4.04
53 54 2.552315 CCAAAGCAAGCCTTTACTCGAA 59.448 45.455 0.00 0.00 41.75 3.71
54 55 3.555518 CAAAGCAAGCCTTTACTCGAAC 58.444 45.455 0.00 0.00 41.75 3.95
55 56 1.809684 AGCAAGCCTTTACTCGAACC 58.190 50.000 0.00 0.00 0.00 3.62
56 57 1.348036 AGCAAGCCTTTACTCGAACCT 59.652 47.619 0.00 0.00 0.00 3.50
57 58 2.152016 GCAAGCCTTTACTCGAACCTT 58.848 47.619 0.00 0.00 0.00 3.50
58 59 2.552743 GCAAGCCTTTACTCGAACCTTT 59.447 45.455 0.00 0.00 0.00 3.11
59 60 3.365064 GCAAGCCTTTACTCGAACCTTTC 60.365 47.826 0.00 0.00 0.00 2.62
60 61 4.065789 CAAGCCTTTACTCGAACCTTTCT 58.934 43.478 0.00 0.00 0.00 2.52
61 62 5.235516 CAAGCCTTTACTCGAACCTTTCTA 58.764 41.667 0.00 0.00 0.00 2.10
62 63 4.818642 AGCCTTTACTCGAACCTTTCTAC 58.181 43.478 0.00 0.00 0.00 2.59
63 64 4.527427 AGCCTTTACTCGAACCTTTCTACT 59.473 41.667 0.00 0.00 0.00 2.57
64 65 5.713861 AGCCTTTACTCGAACCTTTCTACTA 59.286 40.000 0.00 0.00 0.00 1.82
65 66 6.035217 GCCTTTACTCGAACCTTTCTACTAG 58.965 44.000 0.00 0.00 0.00 2.57
66 67 6.350027 GCCTTTACTCGAACCTTTCTACTAGT 60.350 42.308 0.00 0.00 0.00 2.57
67 68 7.600960 CCTTTACTCGAACCTTTCTACTAGTT 58.399 38.462 0.00 0.00 0.00 2.24
68 69 8.734386 CCTTTACTCGAACCTTTCTACTAGTTA 58.266 37.037 0.00 0.00 0.00 2.24
71 72 7.700022 ACTCGAACCTTTCTACTAGTTATGT 57.300 36.000 0.00 0.00 0.00 2.29
72 73 7.536855 ACTCGAACCTTTCTACTAGTTATGTG 58.463 38.462 0.00 0.00 0.00 3.21
73 74 7.176340 ACTCGAACCTTTCTACTAGTTATGTGT 59.824 37.037 0.00 0.00 0.00 3.72
74 75 8.565896 TCGAACCTTTCTACTAGTTATGTGTA 57.434 34.615 0.00 0.00 0.00 2.90
75 76 8.671921 TCGAACCTTTCTACTAGTTATGTGTAG 58.328 37.037 0.00 0.00 36.09 2.74
76 77 7.914346 CGAACCTTTCTACTAGTTATGTGTAGG 59.086 40.741 0.00 2.40 35.63 3.18
77 78 7.110043 ACCTTTCTACTAGTTATGTGTAGGC 57.890 40.000 0.00 0.00 35.63 3.93
78 79 6.666546 ACCTTTCTACTAGTTATGTGTAGGCA 59.333 38.462 0.00 0.00 35.63 4.75
79 80 7.344871 ACCTTTCTACTAGTTATGTGTAGGCAT 59.655 37.037 0.00 0.00 35.63 4.40
80 81 7.653713 CCTTTCTACTAGTTATGTGTAGGCATG 59.346 40.741 0.00 0.00 35.63 4.06
81 82 6.085555 TCTACTAGTTATGTGTAGGCATGC 57.914 41.667 9.90 9.90 35.63 4.06
82 83 4.753516 ACTAGTTATGTGTAGGCATGCA 57.246 40.909 21.36 0.00 0.00 3.96
83 84 5.296151 ACTAGTTATGTGTAGGCATGCAT 57.704 39.130 21.36 16.31 0.00 3.96
84 85 5.300752 ACTAGTTATGTGTAGGCATGCATC 58.699 41.667 21.36 9.42 0.00 3.91
85 86 4.155063 AGTTATGTGTAGGCATGCATCA 57.845 40.909 21.36 12.01 0.00 3.07
86 87 4.722220 AGTTATGTGTAGGCATGCATCAT 58.278 39.130 21.36 14.54 0.00 2.45
87 88 5.868454 AGTTATGTGTAGGCATGCATCATA 58.132 37.500 21.36 13.50 0.00 2.15
88 89 5.702670 AGTTATGTGTAGGCATGCATCATAC 59.297 40.000 21.36 15.72 0.00 2.39
89 90 2.849942 TGTGTAGGCATGCATCATACC 58.150 47.619 21.36 10.38 0.00 2.73
90 91 2.439135 TGTGTAGGCATGCATCATACCT 59.561 45.455 21.36 7.82 40.40 3.08
91 92 3.645687 TGTGTAGGCATGCATCATACCTA 59.354 43.478 21.36 6.76 38.45 3.08
92 93 4.102367 TGTGTAGGCATGCATCATACCTAA 59.898 41.667 21.36 0.00 40.35 2.69
93 94 4.452455 GTGTAGGCATGCATCATACCTAAC 59.548 45.833 21.36 5.31 40.35 2.34
94 95 3.146104 AGGCATGCATCATACCTAACC 57.854 47.619 21.36 0.00 35.99 2.85
95 96 1.806542 GGCATGCATCATACCTAACCG 59.193 52.381 21.36 0.00 0.00 4.44
96 97 2.494059 GCATGCATCATACCTAACCGT 58.506 47.619 14.21 0.00 0.00 4.83
97 98 2.878406 GCATGCATCATACCTAACCGTT 59.122 45.455 14.21 0.00 0.00 4.44
98 99 3.303990 GCATGCATCATACCTAACCGTTG 60.304 47.826 14.21 0.00 0.00 4.10
99 100 3.897141 TGCATCATACCTAACCGTTGA 57.103 42.857 0.00 0.00 0.00 3.18
100 101 3.527533 TGCATCATACCTAACCGTTGAC 58.472 45.455 0.00 0.00 0.00 3.18
101 102 3.055747 TGCATCATACCTAACCGTTGACA 60.056 43.478 0.00 0.00 0.00 3.58
102 103 3.936453 GCATCATACCTAACCGTTGACAA 59.064 43.478 0.00 0.00 0.00 3.18
103 104 4.393680 GCATCATACCTAACCGTTGACAAA 59.606 41.667 0.00 0.00 0.00 2.83
104 105 5.065988 GCATCATACCTAACCGTTGACAAAT 59.934 40.000 0.00 0.00 0.00 2.32
105 106 6.715464 CATCATACCTAACCGTTGACAAATC 58.285 40.000 0.00 0.00 0.00 2.17
106 107 4.865925 TCATACCTAACCGTTGACAAATCG 59.134 41.667 0.00 0.00 0.00 3.34
107 108 3.389925 ACCTAACCGTTGACAAATCGA 57.610 42.857 0.14 0.00 0.00 3.59
108 109 3.934068 ACCTAACCGTTGACAAATCGAT 58.066 40.909 0.00 0.00 0.00 3.59
109 110 3.682858 ACCTAACCGTTGACAAATCGATG 59.317 43.478 0.00 0.00 0.00 3.84
110 111 2.611974 AACCGTTGACAAATCGATGC 57.388 45.000 0.00 0.00 0.00 3.91
111 112 1.518325 ACCGTTGACAAATCGATGCA 58.482 45.000 0.00 0.00 0.00 3.96
112 113 2.083774 ACCGTTGACAAATCGATGCAT 58.916 42.857 0.00 0.00 0.00 3.96
113 114 2.159531 ACCGTTGACAAATCGATGCATG 60.160 45.455 2.46 1.37 0.00 4.06
114 115 2.095692 CCGTTGACAAATCGATGCATGA 59.904 45.455 2.46 2.20 0.00 3.07
115 116 3.242837 CCGTTGACAAATCGATGCATGAT 60.243 43.478 2.46 4.80 0.00 2.45
116 117 4.345288 CGTTGACAAATCGATGCATGATT 58.655 39.130 2.46 10.97 37.65 2.57
117 118 4.794762 CGTTGACAAATCGATGCATGATTT 59.205 37.500 21.40 21.40 44.60 2.17
118 119 5.286797 CGTTGACAAATCGATGCATGATTTT 59.713 36.000 23.14 17.56 41.91 1.82
119 120 6.505265 CGTTGACAAATCGATGCATGATTTTC 60.505 38.462 23.14 21.78 41.91 2.29
120 121 5.952033 TGACAAATCGATGCATGATTTTCA 58.048 33.333 23.14 23.07 41.91 2.69
121 122 6.031471 TGACAAATCGATGCATGATTTTCAG 58.969 36.000 23.14 17.78 41.91 3.02
122 123 5.957798 ACAAATCGATGCATGATTTTCAGT 58.042 33.333 23.14 18.19 41.91 3.41
123 124 6.032094 ACAAATCGATGCATGATTTTCAGTC 58.968 36.000 23.14 1.61 41.91 3.51
124 125 6.127814 ACAAATCGATGCATGATTTTCAGTCT 60.128 34.615 23.14 8.29 41.91 3.24
125 126 6.446781 AATCGATGCATGATTTTCAGTCTT 57.553 33.333 2.46 0.00 32.25 3.01
126 127 5.885230 TCGATGCATGATTTTCAGTCTTT 57.115 34.783 2.46 0.00 0.00 2.52
127 128 6.258230 TCGATGCATGATTTTCAGTCTTTT 57.742 33.333 2.46 0.00 0.00 2.27
128 129 7.376435 TCGATGCATGATTTTCAGTCTTTTA 57.624 32.000 2.46 0.00 0.00 1.52
129 130 7.988737 TCGATGCATGATTTTCAGTCTTTTAT 58.011 30.769 2.46 0.00 0.00 1.40
130 131 8.461222 TCGATGCATGATTTTCAGTCTTTTATT 58.539 29.630 2.46 0.00 0.00 1.40
131 132 9.079833 CGATGCATGATTTTCAGTCTTTTATTT 57.920 29.630 2.46 0.00 0.00 1.40
142 143 8.732746 TTCAGTCTTTTATTTATCAGTAGGGC 57.267 34.615 0.00 0.00 0.00 5.19
143 144 8.090788 TCAGTCTTTTATTTATCAGTAGGGCT 57.909 34.615 0.00 0.00 0.00 5.19
144 145 8.204836 TCAGTCTTTTATTTATCAGTAGGGCTC 58.795 37.037 0.00 0.00 0.00 4.70
145 146 7.987458 CAGTCTTTTATTTATCAGTAGGGCTCA 59.013 37.037 0.00 0.00 0.00 4.26
146 147 8.548877 AGTCTTTTATTTATCAGTAGGGCTCAA 58.451 33.333 0.00 0.00 0.00 3.02
147 148 9.174166 GTCTTTTATTTATCAGTAGGGCTCAAA 57.826 33.333 0.00 0.00 0.00 2.69
148 149 9.920946 TCTTTTATTTATCAGTAGGGCTCAAAT 57.079 29.630 0.00 0.00 0.00 2.32
153 154 7.859325 TTTATCAGTAGGGCTCAAATAACAC 57.141 36.000 0.00 0.00 0.00 3.32
154 155 4.901197 TCAGTAGGGCTCAAATAACACA 57.099 40.909 0.00 0.00 0.00 3.72
155 156 5.435686 TCAGTAGGGCTCAAATAACACAT 57.564 39.130 0.00 0.00 0.00 3.21
156 157 5.185454 TCAGTAGGGCTCAAATAACACATG 58.815 41.667 0.00 0.00 0.00 3.21
157 158 4.336433 CAGTAGGGCTCAAATAACACATGG 59.664 45.833 0.00 0.00 0.00 3.66
158 159 3.737559 AGGGCTCAAATAACACATGGA 57.262 42.857 0.00 0.00 0.00 3.41
159 160 4.255510 AGGGCTCAAATAACACATGGAT 57.744 40.909 0.00 0.00 0.00 3.41
160 161 4.210331 AGGGCTCAAATAACACATGGATC 58.790 43.478 0.00 0.00 0.00 3.36
161 162 3.003689 GGGCTCAAATAACACATGGATCG 59.996 47.826 0.00 0.00 0.00 3.69
162 163 3.876914 GGCTCAAATAACACATGGATCGA 59.123 43.478 0.00 0.00 0.00 3.59
163 164 4.335315 GGCTCAAATAACACATGGATCGAA 59.665 41.667 0.00 0.00 0.00 3.71
164 165 5.163663 GGCTCAAATAACACATGGATCGAAA 60.164 40.000 0.00 0.00 0.00 3.46
165 166 6.321717 GCTCAAATAACACATGGATCGAAAA 58.678 36.000 0.00 0.00 0.00 2.29
166 167 6.251376 GCTCAAATAACACATGGATCGAAAAC 59.749 38.462 0.00 0.00 0.00 2.43
167 168 6.616947 TCAAATAACACATGGATCGAAAACC 58.383 36.000 0.00 0.00 0.00 3.27
168 169 6.432783 TCAAATAACACATGGATCGAAAACCT 59.567 34.615 0.00 0.00 0.00 3.50
169 170 6.834168 AATAACACATGGATCGAAAACCTT 57.166 33.333 0.00 0.00 0.00 3.50
170 171 4.503741 AACACATGGATCGAAAACCTTG 57.496 40.909 15.52 15.52 37.36 3.61
171 172 2.819608 ACACATGGATCGAAAACCTTGG 59.180 45.455 18.83 13.20 36.21 3.61
172 173 2.164219 CACATGGATCGAAAACCTTGGG 59.836 50.000 18.83 14.38 36.21 4.12
173 174 2.041081 ACATGGATCGAAAACCTTGGGA 59.959 45.455 18.83 0.00 36.21 4.37
174 175 3.290710 CATGGATCGAAAACCTTGGGAT 58.709 45.455 11.75 0.00 0.00 3.85
175 176 3.449746 TGGATCGAAAACCTTGGGATT 57.550 42.857 0.00 0.00 0.00 3.01
176 177 3.088532 TGGATCGAAAACCTTGGGATTG 58.911 45.455 0.00 0.00 0.00 2.67
177 178 3.089284 GGATCGAAAACCTTGGGATTGT 58.911 45.455 0.00 0.00 0.00 2.71
178 179 3.128764 GGATCGAAAACCTTGGGATTGTC 59.871 47.826 0.00 0.00 0.00 3.18
179 180 3.216187 TCGAAAACCTTGGGATTGTCA 57.784 42.857 0.00 0.00 0.00 3.58
180 181 3.761897 TCGAAAACCTTGGGATTGTCAT 58.238 40.909 0.00 0.00 0.00 3.06
181 182 3.505680 TCGAAAACCTTGGGATTGTCATG 59.494 43.478 0.00 0.00 0.00 3.07
182 183 3.255642 CGAAAACCTTGGGATTGTCATGT 59.744 43.478 0.00 0.00 0.00 3.21
183 184 4.559153 GAAAACCTTGGGATTGTCATGTG 58.441 43.478 0.00 0.00 0.00 3.21
184 185 3.524095 AACCTTGGGATTGTCATGTGA 57.476 42.857 0.00 0.00 0.00 3.58
185 186 3.744940 ACCTTGGGATTGTCATGTGAT 57.255 42.857 0.00 0.00 0.00 3.06
186 187 3.359033 ACCTTGGGATTGTCATGTGATG 58.641 45.455 0.00 0.00 0.00 3.07
187 188 3.245371 ACCTTGGGATTGTCATGTGATGT 60.245 43.478 0.00 0.00 0.00 3.06
188 189 3.379372 CCTTGGGATTGTCATGTGATGTC 59.621 47.826 0.00 0.00 0.00 3.06
189 190 3.003394 TGGGATTGTCATGTGATGTCC 57.997 47.619 0.00 0.00 0.00 4.02
190 191 1.942657 GGGATTGTCATGTGATGTCCG 59.057 52.381 0.00 0.00 0.00 4.79
191 192 2.632377 GGATTGTCATGTGATGTCCGT 58.368 47.619 0.00 0.00 0.00 4.69
192 193 3.431626 GGGATTGTCATGTGATGTCCGTA 60.432 47.826 0.00 0.00 0.00 4.02
193 194 3.804325 GGATTGTCATGTGATGTCCGTAG 59.196 47.826 0.00 0.00 0.00 3.51
194 195 4.441495 GGATTGTCATGTGATGTCCGTAGA 60.441 45.833 0.00 0.00 0.00 2.59
195 196 4.736126 TTGTCATGTGATGTCCGTAGAT 57.264 40.909 0.00 0.00 0.00 1.98
196 197 4.736126 TGTCATGTGATGTCCGTAGATT 57.264 40.909 0.00 0.00 0.00 2.40
197 198 4.432712 TGTCATGTGATGTCCGTAGATTG 58.567 43.478 0.00 0.00 0.00 2.67
198 199 4.081697 TGTCATGTGATGTCCGTAGATTGT 60.082 41.667 0.00 0.00 0.00 2.71
199 200 4.870426 GTCATGTGATGTCCGTAGATTGTT 59.130 41.667 0.00 0.00 0.00 2.83
200 201 5.351465 GTCATGTGATGTCCGTAGATTGTTT 59.649 40.000 0.00 0.00 0.00 2.83
201 202 5.937540 TCATGTGATGTCCGTAGATTGTTTT 59.062 36.000 0.00 0.00 0.00 2.43
202 203 7.064134 GTCATGTGATGTCCGTAGATTGTTTTA 59.936 37.037 0.00 0.00 0.00 1.52
203 204 7.768582 TCATGTGATGTCCGTAGATTGTTTTAT 59.231 33.333 0.00 0.00 0.00 1.40
204 205 7.915293 TGTGATGTCCGTAGATTGTTTTATT 57.085 32.000 0.00 0.00 0.00 1.40
205 206 7.970384 TGTGATGTCCGTAGATTGTTTTATTC 58.030 34.615 0.00 0.00 0.00 1.75
206 207 7.822334 TGTGATGTCCGTAGATTGTTTTATTCT 59.178 33.333 0.00 0.00 0.00 2.40
207 208 9.309516 GTGATGTCCGTAGATTGTTTTATTCTA 57.690 33.333 0.00 0.00 0.00 2.10
208 209 9.309516 TGATGTCCGTAGATTGTTTTATTCTAC 57.690 33.333 0.00 0.00 38.22 2.59
209 210 8.658499 ATGTCCGTAGATTGTTTTATTCTACC 57.342 34.615 0.00 0.00 38.29 3.18
210 211 7.613585 TGTCCGTAGATTGTTTTATTCTACCA 58.386 34.615 0.00 0.00 38.29 3.25
211 212 8.262227 TGTCCGTAGATTGTTTTATTCTACCAT 58.738 33.333 0.00 0.00 38.29 3.55
212 213 9.754382 GTCCGTAGATTGTTTTATTCTACCATA 57.246 33.333 0.00 0.00 38.29 2.74
213 214 9.976511 TCCGTAGATTGTTTTATTCTACCATAG 57.023 33.333 0.00 0.00 38.29 2.23
214 215 9.976511 CCGTAGATTGTTTTATTCTACCATAGA 57.023 33.333 0.00 0.00 38.29 1.98
252 253 4.983671 AAAACCCGCCAGAAATATTCTC 57.016 40.909 0.00 0.00 38.11 2.87
253 254 3.644966 AACCCGCCAGAAATATTCTCA 57.355 42.857 0.00 0.00 38.11 3.27
254 255 3.864789 ACCCGCCAGAAATATTCTCAT 57.135 42.857 0.00 0.00 38.11 2.90
255 256 3.480470 ACCCGCCAGAAATATTCTCATG 58.520 45.455 0.00 0.00 38.11 3.07
256 257 2.816087 CCCGCCAGAAATATTCTCATGG 59.184 50.000 0.00 0.00 38.11 3.66
257 258 3.496692 CCCGCCAGAAATATTCTCATGGA 60.497 47.826 10.67 0.00 38.11 3.41
258 259 4.136796 CCGCCAGAAATATTCTCATGGAA 58.863 43.478 10.67 0.00 38.11 3.53
259 260 4.763793 CCGCCAGAAATATTCTCATGGAAT 59.236 41.667 12.25 12.25 45.53 3.01
261 262 5.335426 CGCCAGAAATATTCTCATGGAATGG 60.335 44.000 15.59 11.20 46.73 3.16
262 263 5.771666 GCCAGAAATATTCTCATGGAATGGA 59.228 40.000 15.59 2.35 46.73 3.41
263 264 6.266103 GCCAGAAATATTCTCATGGAATGGAA 59.734 38.462 15.59 4.77 46.73 3.53
264 265 7.039223 GCCAGAAATATTCTCATGGAATGGAAT 60.039 37.037 15.59 10.04 46.73 3.01
265 266 8.521176 CCAGAAATATTCTCATGGAATGGAATC 58.479 37.037 15.59 10.25 46.73 2.52
266 267 9.298250 CAGAAATATTCTCATGGAATGGAATCT 57.702 33.333 15.59 11.63 46.73 2.40
274 275 9.784531 TTCTCATGGAATGGAATCTAACTTATC 57.215 33.333 0.00 0.00 46.73 1.75
275 276 8.937835 TCTCATGGAATGGAATCTAACTTATCA 58.062 33.333 0.00 0.00 46.73 2.15
276 277 9.565090 CTCATGGAATGGAATCTAACTTATCAA 57.435 33.333 0.00 0.00 46.73 2.57
284 285 8.908786 TGGAATCTAACTTATCAATCATCCAC 57.091 34.615 0.00 0.00 0.00 4.02
285 286 8.493607 TGGAATCTAACTTATCAATCATCCACA 58.506 33.333 0.00 0.00 0.00 4.17
286 287 9.512588 GGAATCTAACTTATCAATCATCCACAT 57.487 33.333 0.00 0.00 0.00 3.21
288 289 7.734924 TCTAACTTATCAATCATCCACATGC 57.265 36.000 0.00 0.00 0.00 4.06
289 290 5.428496 AACTTATCAATCATCCACATGCG 57.572 39.130 0.00 0.00 0.00 4.73
290 291 4.707105 ACTTATCAATCATCCACATGCGA 58.293 39.130 0.00 0.00 0.00 5.10
291 292 5.125356 ACTTATCAATCATCCACATGCGAA 58.875 37.500 0.00 0.00 0.00 4.70
292 293 3.976793 ATCAATCATCCACATGCGAAC 57.023 42.857 0.00 0.00 0.00 3.95
293 294 2.989909 TCAATCATCCACATGCGAACT 58.010 42.857 0.00 0.00 0.00 3.01
294 295 3.346315 TCAATCATCCACATGCGAACTT 58.654 40.909 0.00 0.00 0.00 2.66
295 296 3.374988 TCAATCATCCACATGCGAACTTC 59.625 43.478 0.00 0.00 0.00 3.01
296 297 2.768253 TCATCCACATGCGAACTTCT 57.232 45.000 0.00 0.00 0.00 2.85
297 298 3.057969 TCATCCACATGCGAACTTCTT 57.942 42.857 0.00 0.00 0.00 2.52
298 299 3.002791 TCATCCACATGCGAACTTCTTC 58.997 45.455 0.00 0.00 0.00 2.87
315 316 9.187455 GAACTTCTTCGAGAATCATAATCCTAC 57.813 37.037 0.00 0.00 33.13 3.18
316 317 8.239038 ACTTCTTCGAGAATCATAATCCTACA 57.761 34.615 0.00 0.00 33.13 2.74
317 318 8.696374 ACTTCTTCGAGAATCATAATCCTACAA 58.304 33.333 0.00 0.00 33.13 2.41
318 319 9.534565 CTTCTTCGAGAATCATAATCCTACAAA 57.465 33.333 0.00 0.00 33.13 2.83
348 349 9.660180 CTATGAAAAATATAAGAGCTCCCTACC 57.340 37.037 10.93 0.00 0.00 3.18
349 350 7.446106 TGAAAAATATAAGAGCTCCCTACCA 57.554 36.000 10.93 0.00 0.00 3.25
350 351 8.045720 TGAAAAATATAAGAGCTCCCTACCAT 57.954 34.615 10.93 0.00 0.00 3.55
351 352 8.157476 TGAAAAATATAAGAGCTCCCTACCATC 58.843 37.037 10.93 0.05 0.00 3.51
352 353 5.923733 AATATAAGAGCTCCCTACCATCG 57.076 43.478 10.93 0.00 0.00 3.84
353 354 3.527507 ATAAGAGCTCCCTACCATCGA 57.472 47.619 10.93 0.00 0.00 3.59
354 355 1.698506 AAGAGCTCCCTACCATCGAG 58.301 55.000 10.93 0.00 0.00 4.04
356 357 3.538614 GCTCCCTACCATCGAGCA 58.461 61.111 3.51 0.00 46.63 4.26
357 358 1.068250 GCTCCCTACCATCGAGCAC 59.932 63.158 3.51 0.00 46.63 4.40
358 359 1.742768 CTCCCTACCATCGAGCACC 59.257 63.158 0.00 0.00 0.00 5.01
359 360 1.001120 TCCCTACCATCGAGCACCA 59.999 57.895 0.00 0.00 0.00 4.17
360 361 1.144057 CCCTACCATCGAGCACCAC 59.856 63.158 0.00 0.00 0.00 4.16
361 362 1.330655 CCCTACCATCGAGCACCACT 61.331 60.000 0.00 0.00 0.00 4.00
362 363 0.537188 CCTACCATCGAGCACCACTT 59.463 55.000 0.00 0.00 0.00 3.16
363 364 1.066143 CCTACCATCGAGCACCACTTT 60.066 52.381 0.00 0.00 0.00 2.66
364 365 2.615493 CCTACCATCGAGCACCACTTTT 60.615 50.000 0.00 0.00 0.00 2.27
365 366 1.981256 ACCATCGAGCACCACTTTTT 58.019 45.000 0.00 0.00 0.00 1.94
366 367 3.134574 ACCATCGAGCACCACTTTTTA 57.865 42.857 0.00 0.00 0.00 1.52
367 368 3.686016 ACCATCGAGCACCACTTTTTAT 58.314 40.909 0.00 0.00 0.00 1.40
368 369 4.079253 ACCATCGAGCACCACTTTTTATT 58.921 39.130 0.00 0.00 0.00 1.40
369 370 4.082787 ACCATCGAGCACCACTTTTTATTG 60.083 41.667 0.00 0.00 0.00 1.90
370 371 4.082787 CCATCGAGCACCACTTTTTATTGT 60.083 41.667 0.00 0.00 0.00 2.71
371 372 5.460646 CATCGAGCACCACTTTTTATTGTT 58.539 37.500 0.00 0.00 0.00 2.83
372 373 6.348950 CCATCGAGCACCACTTTTTATTGTTA 60.349 38.462 0.00 0.00 0.00 2.41
373 374 6.236017 TCGAGCACCACTTTTTATTGTTAG 57.764 37.500 0.00 0.00 0.00 2.34
374 375 4.851558 CGAGCACCACTTTTTATTGTTAGC 59.148 41.667 0.00 0.00 0.00 3.09
375 376 5.334879 CGAGCACCACTTTTTATTGTTAGCT 60.335 40.000 0.00 0.00 0.00 3.32
376 377 6.405278 AGCACCACTTTTTATTGTTAGCTT 57.595 33.333 0.00 0.00 0.00 3.74
377 378 6.816136 AGCACCACTTTTTATTGTTAGCTTT 58.184 32.000 0.00 0.00 0.00 3.51
378 379 6.701400 AGCACCACTTTTTATTGTTAGCTTTG 59.299 34.615 0.00 0.00 0.00 2.77
379 380 6.073819 GCACCACTTTTTATTGTTAGCTTTGG 60.074 38.462 0.00 0.00 0.00 3.28
380 381 6.983890 CACCACTTTTTATTGTTAGCTTTGGT 59.016 34.615 0.00 0.00 32.66 3.67
381 382 7.169140 CACCACTTTTTATTGTTAGCTTTGGTC 59.831 37.037 0.00 0.00 29.97 4.02
382 383 7.147811 ACCACTTTTTATTGTTAGCTTTGGTCA 60.148 33.333 0.00 0.00 0.00 4.02
383 384 7.872483 CCACTTTTTATTGTTAGCTTTGGTCAT 59.128 33.333 0.00 0.00 0.00 3.06
384 385 9.906660 CACTTTTTATTGTTAGCTTTGGTCATA 57.093 29.630 0.00 0.00 0.00 2.15
386 387 8.980143 TTTTTATTGTTAGCTTTGGTCATAGC 57.020 30.769 0.00 5.47 35.94 2.97
387 388 6.693315 TTATTGTTAGCTTTGGTCATAGCC 57.307 37.500 9.22 0.00 36.27 3.93
388 389 2.627945 TGTTAGCTTTGGTCATAGCCG 58.372 47.619 9.22 0.00 36.27 5.52
389 390 2.027561 TGTTAGCTTTGGTCATAGCCGT 60.028 45.455 9.22 0.00 36.27 5.68
390 391 3.007635 GTTAGCTTTGGTCATAGCCGTT 58.992 45.455 9.22 0.00 36.27 4.44
391 392 4.186159 GTTAGCTTTGGTCATAGCCGTTA 58.814 43.478 9.22 0.00 36.27 3.18
392 393 2.629051 AGCTTTGGTCATAGCCGTTAC 58.371 47.619 9.22 0.00 36.27 2.50
393 394 2.236395 AGCTTTGGTCATAGCCGTTACT 59.764 45.455 9.22 0.00 36.27 2.24
394 395 2.608090 GCTTTGGTCATAGCCGTTACTC 59.392 50.000 2.66 0.00 30.63 2.59
395 396 2.973694 TTGGTCATAGCCGTTACTCC 57.026 50.000 0.00 0.00 0.00 3.85
396 397 1.855295 TGGTCATAGCCGTTACTCCA 58.145 50.000 0.00 0.00 0.00 3.86
397 398 2.181125 TGGTCATAGCCGTTACTCCAA 58.819 47.619 0.00 0.00 0.00 3.53
398 399 2.167693 TGGTCATAGCCGTTACTCCAAG 59.832 50.000 0.00 0.00 0.00 3.61
399 400 2.483188 GGTCATAGCCGTTACTCCAAGG 60.483 54.545 0.00 0.00 0.00 3.61
400 401 1.760613 TCATAGCCGTTACTCCAAGGG 59.239 52.381 0.00 0.00 43.74 3.95
401 402 1.485066 CATAGCCGTTACTCCAAGGGT 59.515 52.381 0.00 0.00 42.99 4.34
402 403 0.899720 TAGCCGTTACTCCAAGGGTG 59.100 55.000 0.00 0.00 42.99 4.61
403 404 0.834687 AGCCGTTACTCCAAGGGTGA 60.835 55.000 0.00 0.00 42.99 4.02
404 405 0.252197 GCCGTTACTCCAAGGGTGAT 59.748 55.000 0.00 0.00 42.99 3.06
405 406 2.012051 GCCGTTACTCCAAGGGTGATG 61.012 57.143 0.00 0.00 42.99 3.07
406 407 1.278127 CCGTTACTCCAAGGGTGATGT 59.722 52.381 0.00 0.00 37.39 3.06
407 408 2.498481 CCGTTACTCCAAGGGTGATGTA 59.502 50.000 0.00 0.00 37.39 2.29
408 409 3.134081 CCGTTACTCCAAGGGTGATGTAT 59.866 47.826 0.00 0.00 37.39 2.29
409 410 4.383770 CCGTTACTCCAAGGGTGATGTATT 60.384 45.833 0.00 0.00 37.39 1.89
410 411 4.570772 CGTTACTCCAAGGGTGATGTATTG 59.429 45.833 0.00 0.00 0.00 1.90
424 425 7.031226 GTGATGTATTGCACCAATAATCTGT 57.969 36.000 0.00 0.00 37.94 3.41
497 499 5.627503 GCTTTGGGTTCTTATGGCATTTCAT 60.628 40.000 4.78 0.00 0.00 2.57
501 503 4.279420 GGGTTCTTATGGCATTTCATCCTC 59.721 45.833 4.78 0.00 0.00 3.71
505 507 2.077687 ATGGCATTTCATCCTCACCC 57.922 50.000 0.00 0.00 0.00 4.61
507 509 1.341285 TGGCATTTCATCCTCACCCTG 60.341 52.381 0.00 0.00 0.00 4.45
509 511 2.423947 GGCATTTCATCCTCACCCTGAT 60.424 50.000 0.00 0.00 0.00 2.90
510 512 2.621998 GCATTTCATCCTCACCCTGATG 59.378 50.000 0.00 0.00 39.75 3.07
511 513 3.220110 CATTTCATCCTCACCCTGATGG 58.780 50.000 0.00 0.00 39.06 3.51
524 550 2.307098 CCCTGATGGTTCTTCAGACCTT 59.693 50.000 10.98 0.00 42.63 3.50
527 553 2.087646 GATGGTTCTTCAGACCTTGGC 58.912 52.381 0.00 0.00 0.00 4.52
538 564 3.139077 CAGACCTTGGCTTAGTTTCGTT 58.861 45.455 0.00 0.00 0.00 3.85
540 566 1.607148 ACCTTGGCTTAGTTTCGTTGC 59.393 47.619 0.00 0.00 0.00 4.17
543 569 1.961793 TGGCTTAGTTTCGTTGCTGT 58.038 45.000 0.00 0.00 0.00 4.40
550 576 5.560953 GCTTAGTTTCGTTGCTGTCTTCATT 60.561 40.000 0.00 0.00 0.00 2.57
552 578 3.251004 AGTTTCGTTGCTGTCTTCATTCC 59.749 43.478 0.00 0.00 0.00 3.01
589 616 2.368875 ACCCGGGCTCAAGTCTATAATG 59.631 50.000 24.08 0.00 0.00 1.90
608 635 7.693969 ATAATGAGCTACAATTGCCCTATTC 57.306 36.000 5.05 0.00 0.00 1.75
613 783 4.164988 AGCTACAATTGCCCTATTCAGACT 59.835 41.667 5.05 0.00 0.00 3.24
618 788 4.785346 ATTGCCCTATTCAGACTCACAT 57.215 40.909 0.00 0.00 0.00 3.21
625 795 6.463614 GCCCTATTCAGACTCACATAGAACAT 60.464 42.308 0.00 0.00 0.00 2.71
627 797 8.642432 CCCTATTCAGACTCACATAGAACATAA 58.358 37.037 0.00 0.00 0.00 1.90
628 798 9.689976 CCTATTCAGACTCACATAGAACATAAG 57.310 37.037 0.00 0.00 0.00 1.73
677 852 7.896811 TCAGAAAAGACAAAGCTGATAGTAGA 58.103 34.615 0.00 0.00 31.24 2.59
678 853 8.535335 TCAGAAAAGACAAAGCTGATAGTAGAT 58.465 33.333 0.00 0.00 31.24 1.98
679 854 9.160496 CAGAAAAGACAAAGCTGATAGTAGATT 57.840 33.333 0.00 0.00 0.00 2.40
680 855 9.160496 AGAAAAGACAAAGCTGATAGTAGATTG 57.840 33.333 0.00 0.00 0.00 2.67
681 856 7.856145 AAAGACAAAGCTGATAGTAGATTGG 57.144 36.000 0.00 0.00 0.00 3.16
682 857 6.552445 AGACAAAGCTGATAGTAGATTGGT 57.448 37.500 0.00 0.00 33.17 3.67
701 876 4.412843 TGGTGTGGTGATTGACTAGAGTA 58.587 43.478 0.00 0.00 0.00 2.59
753 2236 2.987413 AAAAATTCATGCACGAGCGA 57.013 40.000 0.00 0.00 46.23 4.93
756 2239 1.372582 AATTCATGCACGAGCGATGT 58.627 45.000 13.55 0.00 46.23 3.06
791 2274 3.634910 TCACAACTTCCAAGGGCTAAAAC 59.365 43.478 0.00 0.00 0.00 2.43
875 2358 1.788886 ACGAAACGAAACGAAGCTACC 59.211 47.619 0.00 0.00 0.00 3.18
942 2431 2.206750 TGAAAACCAAACGAGTCTCCG 58.793 47.619 0.00 0.00 0.00 4.63
984 2477 4.888325 CCCATCTCCGGCCTCCCT 62.888 72.222 0.00 0.00 0.00 4.20
987 2480 2.444895 ATCTCCGGCCTCCCTCAC 60.445 66.667 0.00 0.00 0.00 3.51
1128 2906 2.683933 TCGCCCTCCCTCAAGGAC 60.684 66.667 0.00 0.00 40.93 3.85
1774 3564 4.681074 TTCAAAAAGGTTCCAATCCACC 57.319 40.909 0.00 0.00 0.00 4.61
1786 3576 3.454447 TCCAATCCACCGATGACTTGTAT 59.546 43.478 0.00 0.00 0.00 2.29
1788 3578 5.129650 TCCAATCCACCGATGACTTGTATTA 59.870 40.000 0.00 0.00 0.00 0.98
1789 3579 5.236478 CCAATCCACCGATGACTTGTATTAC 59.764 44.000 0.00 0.00 0.00 1.89
1790 3580 5.871396 ATCCACCGATGACTTGTATTACT 57.129 39.130 0.00 0.00 0.00 2.24
1791 3581 5.258456 TCCACCGATGACTTGTATTACTC 57.742 43.478 0.00 0.00 0.00 2.59
1792 3582 4.707934 TCCACCGATGACTTGTATTACTCA 59.292 41.667 0.00 0.00 0.00 3.41
1793 3583 5.043903 CCACCGATGACTTGTATTACTCAG 58.956 45.833 0.00 0.00 0.00 3.35
1794 3584 5.394224 CCACCGATGACTTGTATTACTCAGT 60.394 44.000 0.00 0.00 0.00 3.41
1799 3589 8.068977 CCGATGACTTGTATTACTCAGTAGTAC 58.931 40.741 9.97 9.97 37.94 2.73
1821 3611 9.032420 AGTACTGCTAGATTTTAATTTCGTAGC 57.968 33.333 0.00 0.00 33.53 3.58
1822 3612 6.934210 ACTGCTAGATTTTAATTTCGTAGCG 58.066 36.000 0.00 0.00 35.27 4.26
1823 3613 6.018994 ACTGCTAGATTTTAATTTCGTAGCGG 60.019 38.462 0.00 5.87 41.93 5.52
1850 3640 4.189231 CGAAACCGAGATAAGAAATGGGT 58.811 43.478 0.00 0.00 0.00 4.51
1854 3644 5.024785 ACCGAGATAAGAAATGGGTTCTC 57.975 43.478 0.00 0.00 46.36 2.87
1855 3645 4.717280 ACCGAGATAAGAAATGGGTTCTCT 59.283 41.667 0.00 0.00 46.36 3.10
1920 3710 3.057736 GTGTCTGATACAGTACCGTGTGT 60.058 47.826 0.00 0.00 39.29 3.72
1921 3711 3.057806 TGTCTGATACAGTACCGTGTGTG 60.058 47.826 0.00 0.00 33.01 3.82
1922 3712 3.189910 GTCTGATACAGTACCGTGTGTGA 59.810 47.826 0.00 0.00 32.61 3.58
1923 3713 4.014406 TCTGATACAGTACCGTGTGTGAT 58.986 43.478 0.00 0.00 32.61 3.06
1924 3714 4.104696 TGATACAGTACCGTGTGTGATG 57.895 45.455 0.00 0.00 31.46 3.07
1925 3715 3.759618 TGATACAGTACCGTGTGTGATGA 59.240 43.478 0.00 0.00 31.46 2.92
1926 3716 4.218852 TGATACAGTACCGTGTGTGATGAA 59.781 41.667 0.00 0.00 31.46 2.57
1927 3717 3.678056 ACAGTACCGTGTGTGATGAAT 57.322 42.857 0.00 0.00 0.00 2.57
1928 3718 4.002906 ACAGTACCGTGTGTGATGAATT 57.997 40.909 0.00 0.00 0.00 2.17
2008 3803 5.813672 TGTGTTGCGTACTTACTTTCTCTTT 59.186 36.000 0.00 0.00 0.00 2.52
2022 3817 5.353678 ACTTTCTCTTTGCTAAGCTATGCTG 59.646 40.000 11.36 3.63 39.62 4.41
2044 3839 6.477053 TGGAGGAGATTAAGTCTGAATCTG 57.523 41.667 16.16 0.00 42.42 2.90
2076 3871 5.853936 TCGATGACCCTAGTAAATGATTGG 58.146 41.667 0.00 0.00 0.00 3.16
2131 3933 9.085250 GTAGTAGAAGTTAAATGTTACTCCTGC 57.915 37.037 3.70 0.00 0.00 4.85
2134 3936 9.649167 GTAGAAGTTAAATGTTACTCCTGCTTA 57.351 33.333 0.00 0.00 0.00 3.09
2135 3937 8.549338 AGAAGTTAAATGTTACTCCTGCTTAC 57.451 34.615 0.00 0.00 0.00 2.34
2137 3939 7.907214 AGTTAAATGTTACTCCTGCTTACTG 57.093 36.000 0.00 0.00 0.00 2.74
2138 3940 6.879458 AGTTAAATGTTACTCCTGCTTACTGG 59.121 38.462 0.00 0.00 36.26 4.00
2140 3942 6.368779 AAATGTTACTCCTGCTTACTGGTA 57.631 37.500 0.00 0.00 36.34 3.25
2141 3943 4.796038 TGTTACTCCTGCTTACTGGTAC 57.204 45.455 0.00 0.00 36.34 3.34
2187 3994 2.996621 GTGAACTGTACTGCAAGGCTAG 59.003 50.000 0.00 0.00 39.30 3.42
2223 4030 0.961019 TGAGCCATTTGCACTGGTTC 59.039 50.000 19.00 19.00 44.83 3.62
2237 4044 5.043903 GCACTGGTTCTTTTCTTCTTTTCC 58.956 41.667 0.00 0.00 0.00 3.13
2238 4045 5.592054 CACTGGTTCTTTTCTTCTTTTCCC 58.408 41.667 0.00 0.00 0.00 3.97
2274 4084 2.884012 ACCGTTGATGATGCAGTTGAAA 59.116 40.909 0.00 0.00 0.00 2.69
2284 4094 1.476085 TGCAGTTGAAAGGTTGGTGTG 59.524 47.619 0.00 0.00 0.00 3.82
2402 4221 1.472376 GCAGCTAGCTACTTGTGGAGG 60.472 57.143 18.86 1.66 41.15 4.30
2410 4229 4.760047 CTTGTGGAGGTCGCCCGG 62.760 72.222 0.00 0.00 35.12 5.73
2474 4306 2.663826 CTGGAAAAGCTAGCGTCTCT 57.336 50.000 9.55 0.00 0.00 3.10
2488 4320 1.181786 GTCTCTCTCAGGACACAGGG 58.818 60.000 0.00 0.00 33.19 4.45
2526 4360 2.820037 CTTTTCTCTCGCCGGGGC 60.820 66.667 14.85 0.00 37.85 5.80
2527 4361 4.404098 TTTTCTCTCGCCGGGGCC 62.404 66.667 14.85 0.00 37.98 5.80
2638 4473 4.615588 AAGATCTGATTGGCCTAGTAGC 57.384 45.455 3.32 0.00 0.00 3.58
2639 4474 3.581101 AGATCTGATTGGCCTAGTAGCA 58.419 45.455 3.32 0.00 0.00 3.49
2640 4475 3.577848 AGATCTGATTGGCCTAGTAGCAG 59.422 47.826 3.32 5.50 0.00 4.24
2651 4486 5.105473 TGGCCTAGTAGCAGTACTTAACTTG 60.105 44.000 3.32 5.54 40.23 3.16
2658 4493 7.992008 AGTAGCAGTACTTAACTTGAGAGATC 58.008 38.462 0.00 0.00 35.88 2.75
2659 4494 6.842437 AGCAGTACTTAACTTGAGAGATCA 57.158 37.500 0.00 0.00 35.76 2.92
2660 4495 7.416964 AGCAGTACTTAACTTGAGAGATCAT 57.583 36.000 0.00 0.00 35.76 2.45
2661 4496 7.846066 AGCAGTACTTAACTTGAGAGATCATT 58.154 34.615 0.00 0.00 35.76 2.57
2682 4517 9.929180 ATCATTCATTCATTCATTCATCAATCC 57.071 29.630 0.00 0.00 0.00 3.01
2728 4563 2.561037 CGGGGTTTCCTTGCCACAC 61.561 63.158 0.00 0.00 0.00 3.82
2730 4565 2.561037 GGGTTTCCTTGCCACACGG 61.561 63.158 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.443887 ATGTTTGATGGTGCAGTTGC 57.556 45.000 0.00 0.00 42.50 4.17
11 12 4.236935 GGTTATGTTTGATGGTGCAGTTG 58.763 43.478 0.00 0.00 0.00 3.16
12 13 3.894427 TGGTTATGTTTGATGGTGCAGTT 59.106 39.130 0.00 0.00 0.00 3.16
13 14 3.495331 TGGTTATGTTTGATGGTGCAGT 58.505 40.909 0.00 0.00 0.00 4.40
14 15 4.517952 TTGGTTATGTTTGATGGTGCAG 57.482 40.909 0.00 0.00 0.00 4.41
15 16 4.798924 GCTTTGGTTATGTTTGATGGTGCA 60.799 41.667 0.00 0.00 0.00 4.57
16 17 3.679502 GCTTTGGTTATGTTTGATGGTGC 59.320 43.478 0.00 0.00 0.00 5.01
17 18 4.880759 TGCTTTGGTTATGTTTGATGGTG 58.119 39.130 0.00 0.00 0.00 4.17
18 19 5.540911 CTTGCTTTGGTTATGTTTGATGGT 58.459 37.500 0.00 0.00 0.00 3.55
19 20 4.389687 GCTTGCTTTGGTTATGTTTGATGG 59.610 41.667 0.00 0.00 0.00 3.51
20 21 4.389687 GGCTTGCTTTGGTTATGTTTGATG 59.610 41.667 0.00 0.00 0.00 3.07
21 22 4.284234 AGGCTTGCTTTGGTTATGTTTGAT 59.716 37.500 0.00 0.00 0.00 2.57
22 23 3.640967 AGGCTTGCTTTGGTTATGTTTGA 59.359 39.130 0.00 0.00 0.00 2.69
23 24 3.993920 AGGCTTGCTTTGGTTATGTTTG 58.006 40.909 0.00 0.00 0.00 2.93
24 25 4.687901 AAGGCTTGCTTTGGTTATGTTT 57.312 36.364 0.00 0.00 0.00 2.83
25 26 4.687901 AAAGGCTTGCTTTGGTTATGTT 57.312 36.364 0.00 0.00 0.00 2.71
26 27 4.832823 AGTAAAGGCTTGCTTTGGTTATGT 59.167 37.500 0.00 0.00 0.00 2.29
27 28 5.391312 AGTAAAGGCTTGCTTTGGTTATG 57.609 39.130 0.00 0.00 0.00 1.90
28 29 4.156008 CGAGTAAAGGCTTGCTTTGGTTAT 59.844 41.667 0.00 0.00 0.00 1.89
29 30 3.500680 CGAGTAAAGGCTTGCTTTGGTTA 59.499 43.478 0.00 0.00 0.00 2.85
30 31 2.293399 CGAGTAAAGGCTTGCTTTGGTT 59.707 45.455 0.00 0.00 0.00 3.67
31 32 1.880027 CGAGTAAAGGCTTGCTTTGGT 59.120 47.619 0.00 0.00 0.00 3.67
32 33 2.151202 TCGAGTAAAGGCTTGCTTTGG 58.849 47.619 0.00 0.00 0.00 3.28
33 34 3.555518 GTTCGAGTAAAGGCTTGCTTTG 58.444 45.455 0.00 0.34 0.00 2.77
34 35 2.552743 GGTTCGAGTAAAGGCTTGCTTT 59.447 45.455 0.00 0.00 0.00 3.51
35 36 2.152016 GGTTCGAGTAAAGGCTTGCTT 58.848 47.619 0.00 0.00 0.00 3.91
36 37 1.348036 AGGTTCGAGTAAAGGCTTGCT 59.652 47.619 0.00 1.93 0.00 3.91
37 38 1.809684 AGGTTCGAGTAAAGGCTTGC 58.190 50.000 0.00 0.00 0.00 4.01
38 39 4.065789 AGAAAGGTTCGAGTAAAGGCTTG 58.934 43.478 0.00 0.00 34.02 4.01
39 40 4.353383 AGAAAGGTTCGAGTAAAGGCTT 57.647 40.909 0.00 0.00 34.02 4.35
40 41 4.527427 AGTAGAAAGGTTCGAGTAAAGGCT 59.473 41.667 0.00 0.00 34.02 4.58
41 42 4.818642 AGTAGAAAGGTTCGAGTAAAGGC 58.181 43.478 0.00 0.00 34.02 4.35
42 43 7.155655 ACTAGTAGAAAGGTTCGAGTAAAGG 57.844 40.000 3.59 0.00 34.02 3.11
45 46 9.236006 ACATAACTAGTAGAAAGGTTCGAGTAA 57.764 33.333 3.59 0.00 34.02 2.24
46 47 8.671921 CACATAACTAGTAGAAAGGTTCGAGTA 58.328 37.037 3.59 0.00 34.02 2.59
47 48 7.176340 ACACATAACTAGTAGAAAGGTTCGAGT 59.824 37.037 3.59 0.00 34.02 4.18
48 49 7.536855 ACACATAACTAGTAGAAAGGTTCGAG 58.463 38.462 3.59 0.00 34.02 4.04
49 50 7.458409 ACACATAACTAGTAGAAAGGTTCGA 57.542 36.000 3.59 0.00 34.02 3.71
50 51 7.914346 CCTACACATAACTAGTAGAAAGGTTCG 59.086 40.741 3.59 0.00 37.92 3.95
51 52 7.705752 GCCTACACATAACTAGTAGAAAGGTTC 59.294 40.741 3.59 0.00 37.92 3.62
52 53 7.179694 TGCCTACACATAACTAGTAGAAAGGTT 59.820 37.037 3.59 0.00 37.92 3.50
53 54 6.666546 TGCCTACACATAACTAGTAGAAAGGT 59.333 38.462 3.59 0.00 37.92 3.50
54 55 7.108841 TGCCTACACATAACTAGTAGAAAGG 57.891 40.000 3.59 0.00 37.92 3.11
55 56 7.169982 GCATGCCTACACATAACTAGTAGAAAG 59.830 40.741 6.36 0.00 37.92 2.62
56 57 6.984474 GCATGCCTACACATAACTAGTAGAAA 59.016 38.462 6.36 0.00 37.92 2.52
57 58 6.097696 TGCATGCCTACACATAACTAGTAGAA 59.902 38.462 16.68 0.00 37.92 2.10
58 59 5.596772 TGCATGCCTACACATAACTAGTAGA 59.403 40.000 16.68 0.00 37.92 2.59
59 60 5.842907 TGCATGCCTACACATAACTAGTAG 58.157 41.667 16.68 0.00 36.01 2.57
60 61 5.862678 TGCATGCCTACACATAACTAGTA 57.137 39.130 16.68 0.00 0.00 1.82
61 62 4.753516 TGCATGCCTACACATAACTAGT 57.246 40.909 16.68 0.00 0.00 2.57
62 63 5.299949 TGATGCATGCCTACACATAACTAG 58.700 41.667 16.68 0.00 0.00 2.57
63 64 5.289083 TGATGCATGCCTACACATAACTA 57.711 39.130 16.68 0.00 0.00 2.24
64 65 4.155063 TGATGCATGCCTACACATAACT 57.845 40.909 16.68 0.00 0.00 2.24
65 66 5.106555 GGTATGATGCATGCCTACACATAAC 60.107 44.000 16.68 14.98 42.11 1.89
66 67 5.003160 GGTATGATGCATGCCTACACATAA 58.997 41.667 16.68 0.00 42.11 1.90
67 68 4.578871 GGTATGATGCATGCCTACACATA 58.421 43.478 16.68 13.67 42.11 2.29
68 69 3.415212 GGTATGATGCATGCCTACACAT 58.585 45.455 16.68 14.58 42.11 3.21
69 70 2.849942 GGTATGATGCATGCCTACACA 58.150 47.619 16.68 8.40 42.11 3.72
75 76 1.806542 CGGTTAGGTATGATGCATGCC 59.193 52.381 16.68 6.44 44.97 4.40
76 77 2.494059 ACGGTTAGGTATGATGCATGC 58.506 47.619 11.82 11.82 0.00 4.06
77 78 4.024893 GTCAACGGTTAGGTATGATGCATG 60.025 45.833 2.46 0.00 0.00 4.06
78 79 4.127171 GTCAACGGTTAGGTATGATGCAT 58.873 43.478 0.00 0.00 0.00 3.96
79 80 3.055747 TGTCAACGGTTAGGTATGATGCA 60.056 43.478 0.00 0.00 0.00 3.96
80 81 3.527533 TGTCAACGGTTAGGTATGATGC 58.472 45.455 0.00 0.00 0.00 3.91
81 82 6.509517 CGATTTGTCAACGGTTAGGTATGATG 60.510 42.308 0.00 0.00 0.00 3.07
82 83 5.522460 CGATTTGTCAACGGTTAGGTATGAT 59.478 40.000 0.00 0.00 0.00 2.45
83 84 4.865925 CGATTTGTCAACGGTTAGGTATGA 59.134 41.667 0.00 0.00 0.00 2.15
84 85 4.865925 TCGATTTGTCAACGGTTAGGTATG 59.134 41.667 0.00 0.00 0.00 2.39
85 86 5.075858 TCGATTTGTCAACGGTTAGGTAT 57.924 39.130 0.00 0.00 0.00 2.73
86 87 4.517952 TCGATTTGTCAACGGTTAGGTA 57.482 40.909 0.00 0.00 0.00 3.08
87 88 3.389925 TCGATTTGTCAACGGTTAGGT 57.610 42.857 0.00 0.00 0.00 3.08
88 89 3.485216 GCATCGATTTGTCAACGGTTAGG 60.485 47.826 0.00 0.00 0.00 2.69
89 90 3.124466 TGCATCGATTTGTCAACGGTTAG 59.876 43.478 0.00 0.00 0.00 2.34
90 91 3.067833 TGCATCGATTTGTCAACGGTTA 58.932 40.909 0.00 0.00 0.00 2.85
91 92 1.876799 TGCATCGATTTGTCAACGGTT 59.123 42.857 0.00 0.00 0.00 4.44
92 93 1.518325 TGCATCGATTTGTCAACGGT 58.482 45.000 0.00 0.00 0.00 4.83
93 94 2.095692 TCATGCATCGATTTGTCAACGG 59.904 45.455 0.00 0.00 0.00 4.44
94 95 3.388149 TCATGCATCGATTTGTCAACG 57.612 42.857 0.00 0.00 0.00 4.10
95 96 6.308524 TGAAAATCATGCATCGATTTGTCAAC 59.691 34.615 24.81 17.64 41.16 3.18
96 97 6.388278 TGAAAATCATGCATCGATTTGTCAA 58.612 32.000 24.81 14.70 41.16 3.18
97 98 5.952033 TGAAAATCATGCATCGATTTGTCA 58.048 33.333 24.81 23.77 41.16 3.58
98 99 6.032094 ACTGAAAATCATGCATCGATTTGTC 58.968 36.000 24.81 22.50 41.16 3.18
99 100 5.957798 ACTGAAAATCATGCATCGATTTGT 58.042 33.333 24.81 19.03 41.16 2.83
100 101 6.263344 AGACTGAAAATCATGCATCGATTTG 58.737 36.000 24.81 18.63 41.16 2.32
101 102 6.446781 AGACTGAAAATCATGCATCGATTT 57.553 33.333 21.40 21.40 43.26 2.17
102 103 6.446781 AAGACTGAAAATCATGCATCGATT 57.553 33.333 14.70 14.70 34.56 3.34
103 104 6.446781 AAAGACTGAAAATCATGCATCGAT 57.553 33.333 0.00 0.70 0.00 3.59
104 105 5.885230 AAAGACTGAAAATCATGCATCGA 57.115 34.783 0.00 0.00 0.00 3.59
105 106 8.624701 AATAAAAGACTGAAAATCATGCATCG 57.375 30.769 0.00 0.00 0.00 3.84
116 117 9.174166 GCCCTACTGATAAATAAAAGACTGAAA 57.826 33.333 0.00 0.00 0.00 2.69
117 118 8.548877 AGCCCTACTGATAAATAAAAGACTGAA 58.451 33.333 0.00 0.00 0.00 3.02
118 119 8.090788 AGCCCTACTGATAAATAAAAGACTGA 57.909 34.615 0.00 0.00 0.00 3.41
119 120 7.987458 TGAGCCCTACTGATAAATAAAAGACTG 59.013 37.037 0.00 0.00 0.00 3.51
120 121 8.090788 TGAGCCCTACTGATAAATAAAAGACT 57.909 34.615 0.00 0.00 0.00 3.24
121 122 8.732746 TTGAGCCCTACTGATAAATAAAAGAC 57.267 34.615 0.00 0.00 0.00 3.01
122 123 9.920946 ATTTGAGCCCTACTGATAAATAAAAGA 57.079 29.630 0.00 0.00 0.00 2.52
127 128 9.555727 GTGTTATTTGAGCCCTACTGATAAATA 57.444 33.333 0.00 0.00 0.00 1.40
128 129 8.052748 TGTGTTATTTGAGCCCTACTGATAAAT 58.947 33.333 0.00 0.00 0.00 1.40
129 130 7.398829 TGTGTTATTTGAGCCCTACTGATAAA 58.601 34.615 0.00 0.00 0.00 1.40
130 131 6.953101 TGTGTTATTTGAGCCCTACTGATAA 58.047 36.000 0.00 0.00 0.00 1.75
131 132 6.553953 TGTGTTATTTGAGCCCTACTGATA 57.446 37.500 0.00 0.00 0.00 2.15
132 133 5.435686 TGTGTTATTTGAGCCCTACTGAT 57.564 39.130 0.00 0.00 0.00 2.90
133 134 4.901197 TGTGTTATTTGAGCCCTACTGA 57.099 40.909 0.00 0.00 0.00 3.41
134 135 4.336433 CCATGTGTTATTTGAGCCCTACTG 59.664 45.833 0.00 0.00 0.00 2.74
135 136 4.227300 TCCATGTGTTATTTGAGCCCTACT 59.773 41.667 0.00 0.00 0.00 2.57
136 137 4.523083 TCCATGTGTTATTTGAGCCCTAC 58.477 43.478 0.00 0.00 0.00 3.18
137 138 4.853468 TCCATGTGTTATTTGAGCCCTA 57.147 40.909 0.00 0.00 0.00 3.53
138 139 3.737559 TCCATGTGTTATTTGAGCCCT 57.262 42.857 0.00 0.00 0.00 5.19
139 140 3.003689 CGATCCATGTGTTATTTGAGCCC 59.996 47.826 0.00 0.00 0.00 5.19
140 141 3.876914 TCGATCCATGTGTTATTTGAGCC 59.123 43.478 0.00 0.00 0.00 4.70
141 142 5.484173 TTCGATCCATGTGTTATTTGAGC 57.516 39.130 0.00 0.00 0.00 4.26
142 143 6.747280 GGTTTTCGATCCATGTGTTATTTGAG 59.253 38.462 0.00 0.00 0.00 3.02
143 144 6.432783 AGGTTTTCGATCCATGTGTTATTTGA 59.567 34.615 0.00 0.00 0.00 2.69
144 145 6.620678 AGGTTTTCGATCCATGTGTTATTTG 58.379 36.000 0.00 0.00 0.00 2.32
145 146 6.834168 AGGTTTTCGATCCATGTGTTATTT 57.166 33.333 0.00 0.00 0.00 1.40
146 147 6.350110 CCAAGGTTTTCGATCCATGTGTTATT 60.350 38.462 0.00 0.00 0.00 1.40
147 148 5.125417 CCAAGGTTTTCGATCCATGTGTTAT 59.875 40.000 0.00 0.00 0.00 1.89
148 149 4.457603 CCAAGGTTTTCGATCCATGTGTTA 59.542 41.667 0.00 0.00 0.00 2.41
149 150 3.255642 CCAAGGTTTTCGATCCATGTGTT 59.744 43.478 0.00 0.00 0.00 3.32
150 151 2.819608 CCAAGGTTTTCGATCCATGTGT 59.180 45.455 0.00 0.00 0.00 3.72
151 152 2.164219 CCCAAGGTTTTCGATCCATGTG 59.836 50.000 0.00 0.00 0.00 3.21
152 153 2.041081 TCCCAAGGTTTTCGATCCATGT 59.959 45.455 0.00 0.00 0.00 3.21
153 154 2.722094 TCCCAAGGTTTTCGATCCATG 58.278 47.619 0.00 0.00 0.00 3.66
154 155 3.669939 ATCCCAAGGTTTTCGATCCAT 57.330 42.857 0.00 0.00 0.00 3.41
155 156 3.088532 CAATCCCAAGGTTTTCGATCCA 58.911 45.455 0.00 0.00 0.00 3.41
156 157 3.089284 ACAATCCCAAGGTTTTCGATCC 58.911 45.455 0.00 0.00 0.00 3.36
157 158 3.756434 TGACAATCCCAAGGTTTTCGATC 59.244 43.478 0.00 0.00 0.00 3.69
158 159 3.761897 TGACAATCCCAAGGTTTTCGAT 58.238 40.909 0.00 0.00 0.00 3.59
159 160 3.216187 TGACAATCCCAAGGTTTTCGA 57.784 42.857 0.00 0.00 0.00 3.71
160 161 3.255642 ACATGACAATCCCAAGGTTTTCG 59.744 43.478 0.00 0.00 0.00 3.46
161 162 4.280677 TCACATGACAATCCCAAGGTTTTC 59.719 41.667 0.00 0.00 0.00 2.29
162 163 4.222336 TCACATGACAATCCCAAGGTTTT 58.778 39.130 0.00 0.00 0.00 2.43
163 164 3.843422 TCACATGACAATCCCAAGGTTT 58.157 40.909 0.00 0.00 0.00 3.27
164 165 3.524095 TCACATGACAATCCCAAGGTT 57.476 42.857 0.00 0.00 0.00 3.50
165 166 3.245371 ACATCACATGACAATCCCAAGGT 60.245 43.478 0.00 0.00 0.00 3.50
166 167 3.359033 ACATCACATGACAATCCCAAGG 58.641 45.455 0.00 0.00 0.00 3.61
167 168 3.379372 GGACATCACATGACAATCCCAAG 59.621 47.826 0.00 0.00 0.00 3.61
168 169 3.355378 GGACATCACATGACAATCCCAA 58.645 45.455 0.00 0.00 0.00 4.12
169 170 2.680513 CGGACATCACATGACAATCCCA 60.681 50.000 0.00 0.00 0.00 4.37
170 171 1.942657 CGGACATCACATGACAATCCC 59.057 52.381 0.00 0.00 0.00 3.85
171 172 2.632377 ACGGACATCACATGACAATCC 58.368 47.619 0.00 0.00 0.00 3.01
172 173 4.682787 TCTACGGACATCACATGACAATC 58.317 43.478 0.00 0.00 0.00 2.67
173 174 4.736126 TCTACGGACATCACATGACAAT 57.264 40.909 0.00 0.00 0.00 2.71
174 175 4.736126 ATCTACGGACATCACATGACAA 57.264 40.909 0.00 0.00 0.00 3.18
175 176 4.081697 ACAATCTACGGACATCACATGACA 60.082 41.667 0.00 0.00 0.00 3.58
176 177 4.433615 ACAATCTACGGACATCACATGAC 58.566 43.478 0.00 0.00 0.00 3.06
177 178 4.736126 ACAATCTACGGACATCACATGA 57.264 40.909 0.00 0.00 0.00 3.07
178 179 5.801350 AAACAATCTACGGACATCACATG 57.199 39.130 0.00 0.00 0.00 3.21
179 180 8.506168 AATAAAACAATCTACGGACATCACAT 57.494 30.769 0.00 0.00 0.00 3.21
180 181 7.822334 AGAATAAAACAATCTACGGACATCACA 59.178 33.333 0.00 0.00 0.00 3.58
181 182 8.197988 AGAATAAAACAATCTACGGACATCAC 57.802 34.615 0.00 0.00 0.00 3.06
182 183 9.309516 GTAGAATAAAACAATCTACGGACATCA 57.690 33.333 0.00 0.00 37.05 3.07
183 184 8.762426 GGTAGAATAAAACAATCTACGGACATC 58.238 37.037 6.20 0.00 44.08 3.06
184 185 8.262227 TGGTAGAATAAAACAATCTACGGACAT 58.738 33.333 6.20 0.00 44.08 3.06
185 186 7.613585 TGGTAGAATAAAACAATCTACGGACA 58.386 34.615 6.20 0.00 44.08 4.02
186 187 8.658499 ATGGTAGAATAAAACAATCTACGGAC 57.342 34.615 6.20 0.00 44.08 4.79
187 188 9.976511 CTATGGTAGAATAAAACAATCTACGGA 57.023 33.333 6.20 0.00 44.08 4.69
188 189 9.976511 TCTATGGTAGAATAAAACAATCTACGG 57.023 33.333 6.20 0.00 44.08 4.02
230 231 4.770010 TGAGAATATTTCTGGCGGGTTTTT 59.230 37.500 0.00 0.00 40.87 1.94
231 232 4.340617 TGAGAATATTTCTGGCGGGTTTT 58.659 39.130 0.00 0.00 40.87 2.43
232 233 3.963129 TGAGAATATTTCTGGCGGGTTT 58.037 40.909 0.00 0.00 40.87 3.27
233 234 3.644966 TGAGAATATTTCTGGCGGGTT 57.355 42.857 0.00 0.00 40.87 4.11
234 235 3.480470 CATGAGAATATTTCTGGCGGGT 58.520 45.455 0.00 0.00 40.87 5.28
235 236 2.816087 CCATGAGAATATTTCTGGCGGG 59.184 50.000 0.00 0.00 40.87 6.13
236 237 3.743521 TCCATGAGAATATTTCTGGCGG 58.256 45.455 0.00 0.00 40.87 6.13
237 238 5.335426 CCATTCCATGAGAATATTTCTGGCG 60.335 44.000 8.52 0.00 43.63 5.69
238 239 5.771666 TCCATTCCATGAGAATATTTCTGGC 59.228 40.000 8.52 0.00 43.63 4.85
239 240 7.828508 TTCCATTCCATGAGAATATTTCTGG 57.171 36.000 8.52 7.14 43.63 3.86
240 241 9.298250 AGATTCCATTCCATGAGAATATTTCTG 57.702 33.333 8.52 0.00 43.63 3.02
248 249 9.784531 GATAAGTTAGATTCCATTCCATGAGAA 57.215 33.333 0.00 0.00 39.32 2.87
249 250 8.937835 TGATAAGTTAGATTCCATTCCATGAGA 58.062 33.333 0.00 0.00 0.00 3.27
250 251 9.565090 TTGATAAGTTAGATTCCATTCCATGAG 57.435 33.333 0.00 0.00 0.00 2.90
258 259 9.512588 GTGGATGATTGATAAGTTAGATTCCAT 57.487 33.333 0.00 0.00 31.65 3.41
259 260 8.493607 TGTGGATGATTGATAAGTTAGATTCCA 58.506 33.333 0.00 0.00 0.00 3.53
260 261 8.908786 TGTGGATGATTGATAAGTTAGATTCC 57.091 34.615 0.00 0.00 0.00 3.01
262 263 8.790718 GCATGTGGATGATTGATAAGTTAGATT 58.209 33.333 0.00 0.00 0.00 2.40
263 264 7.118825 CGCATGTGGATGATTGATAAGTTAGAT 59.881 37.037 0.00 0.00 0.00 1.98
264 265 6.424812 CGCATGTGGATGATTGATAAGTTAGA 59.575 38.462 0.00 0.00 0.00 2.10
265 266 6.424812 TCGCATGTGGATGATTGATAAGTTAG 59.575 38.462 6.39 0.00 0.00 2.34
266 267 6.287525 TCGCATGTGGATGATTGATAAGTTA 58.712 36.000 6.39 0.00 0.00 2.24
267 268 5.125356 TCGCATGTGGATGATTGATAAGTT 58.875 37.500 6.39 0.00 0.00 2.66
268 269 4.707105 TCGCATGTGGATGATTGATAAGT 58.293 39.130 6.39 0.00 0.00 2.24
269 270 5.237996 AGTTCGCATGTGGATGATTGATAAG 59.762 40.000 6.39 0.00 0.00 1.73
270 271 5.125356 AGTTCGCATGTGGATGATTGATAA 58.875 37.500 6.39 0.00 0.00 1.75
271 272 4.707105 AGTTCGCATGTGGATGATTGATA 58.293 39.130 6.39 0.00 0.00 2.15
272 273 3.548770 AGTTCGCATGTGGATGATTGAT 58.451 40.909 6.39 0.00 0.00 2.57
273 274 2.989909 AGTTCGCATGTGGATGATTGA 58.010 42.857 6.39 0.00 0.00 2.57
274 275 3.376234 AGAAGTTCGCATGTGGATGATTG 59.624 43.478 6.39 0.00 0.00 2.67
275 276 3.614092 AGAAGTTCGCATGTGGATGATT 58.386 40.909 6.39 0.00 0.00 2.57
276 277 3.272574 AGAAGTTCGCATGTGGATGAT 57.727 42.857 6.39 0.00 0.00 2.45
277 278 2.768253 AGAAGTTCGCATGTGGATGA 57.232 45.000 6.39 0.00 0.00 2.92
278 279 3.395858 GAAGAAGTTCGCATGTGGATG 57.604 47.619 6.39 0.00 0.00 3.51
289 290 9.187455 GTAGGATTATGATTCTCGAAGAAGTTC 57.813 37.037 0.00 0.00 37.69 3.01
290 291 8.696374 TGTAGGATTATGATTCTCGAAGAAGTT 58.304 33.333 0.00 0.00 37.69 2.66
291 292 8.239038 TGTAGGATTATGATTCTCGAAGAAGT 57.761 34.615 0.00 0.00 37.69 3.01
292 293 9.534565 TTTGTAGGATTATGATTCTCGAAGAAG 57.465 33.333 0.00 0.00 37.69 2.85
322 323 9.660180 GGTAGGGAGCTCTTATATTTTTCATAG 57.340 37.037 14.64 0.00 0.00 2.23
323 324 9.166222 TGGTAGGGAGCTCTTATATTTTTCATA 57.834 33.333 14.64 0.00 0.00 2.15
324 325 8.045720 TGGTAGGGAGCTCTTATATTTTTCAT 57.954 34.615 14.64 0.00 0.00 2.57
325 326 7.446106 TGGTAGGGAGCTCTTATATTTTTCA 57.554 36.000 14.64 0.00 0.00 2.69
326 327 7.332182 CGATGGTAGGGAGCTCTTATATTTTTC 59.668 40.741 14.64 0.75 0.00 2.29
327 328 7.016268 TCGATGGTAGGGAGCTCTTATATTTTT 59.984 37.037 14.64 0.00 0.00 1.94
328 329 6.497259 TCGATGGTAGGGAGCTCTTATATTTT 59.503 38.462 14.64 0.00 0.00 1.82
329 330 6.017192 TCGATGGTAGGGAGCTCTTATATTT 58.983 40.000 14.64 0.00 0.00 1.40
330 331 5.580998 TCGATGGTAGGGAGCTCTTATATT 58.419 41.667 14.64 0.00 0.00 1.28
331 332 5.194473 TCGATGGTAGGGAGCTCTTATAT 57.806 43.478 14.64 6.07 0.00 0.86
332 333 4.590918 CTCGATGGTAGGGAGCTCTTATA 58.409 47.826 14.64 1.33 0.00 0.98
333 334 3.426615 CTCGATGGTAGGGAGCTCTTAT 58.573 50.000 14.64 2.36 0.00 1.73
334 335 2.865079 CTCGATGGTAGGGAGCTCTTA 58.135 52.381 14.64 4.04 0.00 2.10
335 336 1.698506 CTCGATGGTAGGGAGCTCTT 58.301 55.000 14.64 5.09 0.00 2.85
336 337 3.430473 CTCGATGGTAGGGAGCTCT 57.570 57.895 14.64 0.00 0.00 4.09
340 341 1.043116 TGGTGCTCGATGGTAGGGAG 61.043 60.000 0.00 0.00 0.00 4.30
341 342 1.001120 TGGTGCTCGATGGTAGGGA 59.999 57.895 0.00 0.00 0.00 4.20
342 343 1.144057 GTGGTGCTCGATGGTAGGG 59.856 63.158 0.00 0.00 0.00 3.53
343 344 0.537188 AAGTGGTGCTCGATGGTAGG 59.463 55.000 0.00 0.00 0.00 3.18
344 345 2.386661 AAAGTGGTGCTCGATGGTAG 57.613 50.000 0.00 0.00 0.00 3.18
345 346 2.851263 AAAAGTGGTGCTCGATGGTA 57.149 45.000 0.00 0.00 0.00 3.25
346 347 1.981256 AAAAAGTGGTGCTCGATGGT 58.019 45.000 0.00 0.00 0.00 3.55
347 348 4.082787 ACAATAAAAAGTGGTGCTCGATGG 60.083 41.667 0.00 0.00 0.00 3.51
348 349 5.046910 ACAATAAAAAGTGGTGCTCGATG 57.953 39.130 0.00 0.00 0.00 3.84
349 350 5.705609 AACAATAAAAAGTGGTGCTCGAT 57.294 34.783 0.00 0.00 0.00 3.59
350 351 5.334569 GCTAACAATAAAAAGTGGTGCTCGA 60.335 40.000 0.00 0.00 0.00 4.04
351 352 4.851558 GCTAACAATAAAAAGTGGTGCTCG 59.148 41.667 0.00 0.00 0.00 5.03
352 353 6.013842 AGCTAACAATAAAAAGTGGTGCTC 57.986 37.500 0.00 0.00 0.00 4.26
353 354 6.405278 AAGCTAACAATAAAAAGTGGTGCT 57.595 33.333 0.00 0.00 0.00 4.40
354 355 6.073819 CCAAAGCTAACAATAAAAAGTGGTGC 60.074 38.462 0.00 0.00 0.00 5.01
355 356 6.983890 ACCAAAGCTAACAATAAAAAGTGGTG 59.016 34.615 0.00 0.00 33.37 4.17
356 357 7.119709 ACCAAAGCTAACAATAAAAAGTGGT 57.880 32.000 0.00 0.00 0.00 4.16
357 358 7.206687 TGACCAAAGCTAACAATAAAAAGTGG 58.793 34.615 0.00 0.00 0.00 4.00
358 359 8.816640 ATGACCAAAGCTAACAATAAAAAGTG 57.183 30.769 0.00 0.00 0.00 3.16
360 361 9.076596 GCTATGACCAAAGCTAACAATAAAAAG 57.923 33.333 0.00 0.00 35.80 2.27
361 362 8.032451 GGCTATGACCAAAGCTAACAATAAAAA 58.968 33.333 0.00 0.00 38.80 1.94
362 363 7.543756 GGCTATGACCAAAGCTAACAATAAAA 58.456 34.615 0.00 0.00 38.80 1.52
363 364 6.183360 CGGCTATGACCAAAGCTAACAATAAA 60.183 38.462 0.00 0.00 38.80 1.40
364 365 5.295787 CGGCTATGACCAAAGCTAACAATAA 59.704 40.000 0.00 0.00 38.80 1.40
365 366 4.814234 CGGCTATGACCAAAGCTAACAATA 59.186 41.667 0.00 0.00 38.80 1.90
366 367 3.627577 CGGCTATGACCAAAGCTAACAAT 59.372 43.478 0.00 0.00 38.80 2.71
367 368 3.006940 CGGCTATGACCAAAGCTAACAA 58.993 45.455 0.00 0.00 38.80 2.83
368 369 2.027561 ACGGCTATGACCAAAGCTAACA 60.028 45.455 0.00 0.00 38.80 2.41
369 370 2.629051 ACGGCTATGACCAAAGCTAAC 58.371 47.619 0.00 0.00 38.80 2.34
370 371 3.343941 AACGGCTATGACCAAAGCTAA 57.656 42.857 0.00 0.00 38.80 3.09
371 372 3.449737 AGTAACGGCTATGACCAAAGCTA 59.550 43.478 0.00 0.00 38.80 3.32
372 373 2.236395 AGTAACGGCTATGACCAAAGCT 59.764 45.455 0.00 0.00 38.80 3.74
373 374 2.608090 GAGTAACGGCTATGACCAAAGC 59.392 50.000 0.00 0.00 38.03 3.51
374 375 3.195661 GGAGTAACGGCTATGACCAAAG 58.804 50.000 0.00 0.00 0.00 2.77
375 376 2.568062 TGGAGTAACGGCTATGACCAAA 59.432 45.455 0.00 0.00 0.00 3.28
376 377 2.181125 TGGAGTAACGGCTATGACCAA 58.819 47.619 0.00 0.00 0.00 3.67
377 378 1.855295 TGGAGTAACGGCTATGACCA 58.145 50.000 0.00 0.00 0.00 4.02
378 379 2.483188 CCTTGGAGTAACGGCTATGACC 60.483 54.545 0.00 0.00 0.00 4.02
379 380 2.483188 CCCTTGGAGTAACGGCTATGAC 60.483 54.545 0.00 0.00 0.00 3.06
380 381 1.760613 CCCTTGGAGTAACGGCTATGA 59.239 52.381 0.00 0.00 0.00 2.15
381 382 1.485066 ACCCTTGGAGTAACGGCTATG 59.515 52.381 0.00 0.00 0.00 2.23
382 383 1.485066 CACCCTTGGAGTAACGGCTAT 59.515 52.381 0.00 0.00 0.00 2.97
383 384 0.899720 CACCCTTGGAGTAACGGCTA 59.100 55.000 0.00 0.00 0.00 3.93
384 385 0.834687 TCACCCTTGGAGTAACGGCT 60.835 55.000 0.00 0.00 0.00 5.52
385 386 0.252197 ATCACCCTTGGAGTAACGGC 59.748 55.000 0.00 0.00 0.00 5.68
386 387 1.278127 ACATCACCCTTGGAGTAACGG 59.722 52.381 0.00 0.00 0.00 4.44
387 388 2.762535 ACATCACCCTTGGAGTAACG 57.237 50.000 0.00 0.00 0.00 3.18
388 389 4.335594 GCAATACATCACCCTTGGAGTAAC 59.664 45.833 0.00 0.00 0.00 2.50
389 390 4.018870 TGCAATACATCACCCTTGGAGTAA 60.019 41.667 0.00 0.00 0.00 2.24
390 391 3.521531 TGCAATACATCACCCTTGGAGTA 59.478 43.478 0.00 0.00 0.00 2.59
391 392 2.308570 TGCAATACATCACCCTTGGAGT 59.691 45.455 0.00 0.00 0.00 3.85
392 393 2.684881 GTGCAATACATCACCCTTGGAG 59.315 50.000 0.00 0.00 0.00 3.86
393 394 2.620367 GGTGCAATACATCACCCTTGGA 60.620 50.000 0.00 0.00 45.26 3.53
394 395 1.750778 GGTGCAATACATCACCCTTGG 59.249 52.381 0.00 0.00 45.26 3.61
400 401 7.031226 ACAGATTATTGGTGCAATACATCAC 57.969 36.000 0.00 0.00 39.80 3.06
401 402 6.827762 TGACAGATTATTGGTGCAATACATCA 59.172 34.615 0.00 0.00 37.72 3.07
402 403 7.012704 ACTGACAGATTATTGGTGCAATACATC 59.987 37.037 10.08 0.00 36.26 3.06
403 404 6.830324 ACTGACAGATTATTGGTGCAATACAT 59.170 34.615 10.08 0.00 36.26 2.29
404 405 6.179756 ACTGACAGATTATTGGTGCAATACA 58.820 36.000 10.08 0.00 36.26 2.29
405 406 6.683974 ACTGACAGATTATTGGTGCAATAC 57.316 37.500 10.08 0.00 36.26 1.89
406 407 8.800370 TTAACTGACAGATTATTGGTGCAATA 57.200 30.769 10.08 0.00 35.54 1.90
407 408 7.701539 TTAACTGACAGATTATTGGTGCAAT 57.298 32.000 10.08 0.00 37.80 3.56
408 409 7.013750 TGTTTAACTGACAGATTATTGGTGCAA 59.986 33.333 10.08 0.00 0.00 4.08
409 410 6.488344 TGTTTAACTGACAGATTATTGGTGCA 59.512 34.615 10.08 0.00 0.00 4.57
410 411 6.908825 TGTTTAACTGACAGATTATTGGTGC 58.091 36.000 10.08 0.00 0.00 5.01
444 446 4.560128 CTTCTCCTCGAAATGTGTTGAGA 58.440 43.478 0.00 0.00 0.00 3.27
505 507 3.341823 CCAAGGTCTGAAGAACCATCAG 58.658 50.000 0.00 0.00 44.53 2.90
507 509 2.087646 GCCAAGGTCTGAAGAACCATC 58.912 52.381 0.00 0.00 30.36 3.51
509 511 1.140312 AGCCAAGGTCTGAAGAACCA 58.860 50.000 0.00 0.00 30.36 3.67
510 512 2.278332 AAGCCAAGGTCTGAAGAACC 57.722 50.000 0.00 0.00 30.36 3.62
511 513 4.009370 ACTAAGCCAAGGTCTGAAGAAC 57.991 45.455 0.00 0.00 0.00 3.01
512 514 4.706842 AACTAAGCCAAGGTCTGAAGAA 57.293 40.909 0.00 0.00 0.00 2.52
524 550 1.871039 GACAGCAACGAAACTAAGCCA 59.129 47.619 0.00 0.00 0.00 4.75
527 553 5.597813 ATGAAGACAGCAACGAAACTAAG 57.402 39.130 0.00 0.00 0.00 2.18
538 564 0.684535 TGTCCGGAATGAAGACAGCA 59.315 50.000 5.23 0.00 35.67 4.41
540 566 3.599343 TCAATGTCCGGAATGAAGACAG 58.401 45.455 5.23 0.00 43.30 3.51
543 569 5.869649 TCTATCAATGTCCGGAATGAAGA 57.130 39.130 5.23 13.08 0.00 2.87
550 576 2.632996 GGGTGATCTATCAATGTCCGGA 59.367 50.000 0.00 0.00 38.75 5.14
552 578 2.610479 CCGGGTGATCTATCAATGTCCG 60.610 54.545 0.00 13.57 38.75 4.79
589 616 4.513318 GTCTGAATAGGGCAATTGTAGCTC 59.487 45.833 7.40 0.00 0.00 4.09
593 620 5.045942 TGTGAGTCTGAATAGGGCAATTGTA 60.046 40.000 7.40 0.00 0.00 2.41
650 820 7.992754 ACTATCAGCTTTGTCTTTTCTGAAT 57.007 32.000 0.00 0.00 37.34 2.57
660 831 6.036517 CACACCAATCTACTATCAGCTTTGTC 59.963 42.308 0.00 0.00 0.00 3.18
667 842 5.598416 TCACCACACCAATCTACTATCAG 57.402 43.478 0.00 0.00 0.00 2.90
669 844 6.480320 GTCAATCACCACACCAATCTACTATC 59.520 42.308 0.00 0.00 0.00 2.08
673 848 4.579869 AGTCAATCACCACACCAATCTAC 58.420 43.478 0.00 0.00 0.00 2.59
677 852 4.287067 ACTCTAGTCAATCACCACACCAAT 59.713 41.667 0.00 0.00 0.00 3.16
678 853 3.646162 ACTCTAGTCAATCACCACACCAA 59.354 43.478 0.00 0.00 0.00 3.67
679 854 3.239449 ACTCTAGTCAATCACCACACCA 58.761 45.455 0.00 0.00 0.00 4.17
680 855 3.963428 ACTCTAGTCAATCACCACACC 57.037 47.619 0.00 0.00 0.00 4.16
681 856 7.773149 ACTATTACTCTAGTCAATCACCACAC 58.227 38.462 0.00 0.00 0.00 3.82
682 857 7.068348 GGACTATTACTCTAGTCAATCACCACA 59.932 40.741 11.99 0.00 46.23 4.17
701 876 8.430431 GCTTAGGTAAAATACTCCTGGACTATT 58.570 37.037 0.00 0.00 33.34 1.73
721 896 8.545420 GTGCATGAATTTTTATTGATGCTTAGG 58.455 33.333 18.34 0.00 46.46 2.69
803 2286 3.732048 TGGAATTTGAAGGAGGGGTAC 57.268 47.619 0.00 0.00 0.00 3.34
804 2287 4.412843 GTTTGGAATTTGAAGGAGGGGTA 58.587 43.478 0.00 0.00 0.00 3.69
942 2431 0.306533 GAGAGACGAGATGCCGAGAC 59.693 60.000 0.00 0.00 0.00 3.36
984 2477 4.414956 ATGGGAGGAGGCGGGTGA 62.415 66.667 0.00 0.00 0.00 4.02
987 2480 4.181010 CACATGGGAGGAGGCGGG 62.181 72.222 0.00 0.00 0.00 6.13
1774 3564 8.828644 AGTACTACTGAGTAATACAAGTCATCG 58.171 37.037 12.96 0.00 39.91 3.84
1799 3589 6.355638 CCGCTACGAAATTAAAATCTAGCAG 58.644 40.000 0.00 10.66 0.00 4.24
1801 3591 5.235831 ACCCGCTACGAAATTAAAATCTAGC 59.764 40.000 0.00 0.00 0.00 3.42
1822 3612 2.689983 TCTTATCTCGGTTTCGGTACCC 59.310 50.000 6.25 0.00 34.56 3.69
1823 3613 4.376340 TTCTTATCTCGGTTTCGGTACC 57.624 45.455 0.16 0.16 36.95 3.34
1829 3619 5.880887 AGAACCCATTTCTTATCTCGGTTTC 59.119 40.000 0.00 0.00 42.37 2.78
1832 3622 4.717280 AGAGAACCCATTTCTTATCTCGGT 59.283 41.667 0.00 0.00 45.24 4.69
1833 3623 5.053145 CAGAGAACCCATTTCTTATCTCGG 58.947 45.833 0.00 0.00 45.24 4.63
1920 3710 5.534207 AAACTTGCAACTCCAATTCATCA 57.466 34.783 0.00 0.00 0.00 3.07
1921 3711 5.984926 TGAAAACTTGCAACTCCAATTCATC 59.015 36.000 0.00 0.00 0.00 2.92
1922 3712 5.916318 TGAAAACTTGCAACTCCAATTCAT 58.084 33.333 0.00 0.00 0.00 2.57
1923 3713 5.336150 TGAAAACTTGCAACTCCAATTCA 57.664 34.783 0.00 0.00 0.00 2.57
1924 3714 4.209911 GCTGAAAACTTGCAACTCCAATTC 59.790 41.667 0.00 0.00 0.00 2.17
1925 3715 4.122046 GCTGAAAACTTGCAACTCCAATT 58.878 39.130 0.00 0.00 0.00 2.32
1926 3716 3.132646 TGCTGAAAACTTGCAACTCCAAT 59.867 39.130 0.00 0.00 33.48 3.16
1927 3717 2.495270 TGCTGAAAACTTGCAACTCCAA 59.505 40.909 0.00 0.00 33.48 3.53
1928 3718 2.098614 TGCTGAAAACTTGCAACTCCA 58.901 42.857 0.00 0.00 33.48 3.86
2008 3803 1.690893 CTCCTCCAGCATAGCTTAGCA 59.309 52.381 7.07 0.00 36.40 3.49
2022 3817 6.723298 TCAGATTCAGACTTAATCTCCTCC 57.277 41.667 8.63 0.00 40.81 4.30
2044 3839 4.566987 ACTAGGGTCATCGAACAAACTTC 58.433 43.478 0.00 0.00 0.00 3.01
2127 3929 5.662674 AACTTCTAGTACCAGTAAGCAGG 57.337 43.478 0.00 0.00 0.00 4.85
2130 3932 9.356433 CTTTCTTAACTTCTAGTACCAGTAAGC 57.644 37.037 0.00 0.00 0.00 3.09
2210 4017 5.859205 AGAAGAAAAGAACCAGTGCAAAT 57.141 34.783 0.00 0.00 0.00 2.32
2223 4030 9.038803 CATTTTGAAGAGGGAAAAGAAGAAAAG 57.961 33.333 0.00 0.00 0.00 2.27
2237 4044 4.036262 TCAACGGTGAACATTTTGAAGAGG 59.964 41.667 0.00 0.00 0.00 3.69
2238 4045 5.168526 TCAACGGTGAACATTTTGAAGAG 57.831 39.130 0.00 0.00 0.00 2.85
2274 4084 1.181786 CAAACCACACACACCAACCT 58.818 50.000 0.00 0.00 0.00 3.50
2284 4094 3.666638 GCAAACAAACAAGCAAACCACAC 60.667 43.478 0.00 0.00 0.00 3.82
2410 4229 0.876342 CCGTAAGATCTCGGCAAGGC 60.876 60.000 9.67 0.00 40.28 4.35
2474 4306 1.079256 CCTCCCCTGTGTCCTGAGA 59.921 63.158 0.00 0.00 0.00 3.27
2488 4320 0.820226 GGCATCCAAGAAAAGCCTCC 59.180 55.000 0.00 0.00 42.01 4.30
2526 4360 1.602377 GCTCCCGTTCCATTTTATCGG 59.398 52.381 0.00 0.00 40.72 4.18
2527 4361 2.544267 GAGCTCCCGTTCCATTTTATCG 59.456 50.000 0.87 0.00 0.00 2.92
2530 4364 1.276989 ACGAGCTCCCGTTCCATTTTA 59.723 47.619 8.47 0.00 40.17 1.52
2638 4473 9.814899 ATGAATGATCTCTCAAGTTAAGTACTG 57.185 33.333 0.00 0.00 37.12 2.74
2658 4493 7.865889 ACGGATTGATGAATGAATGAATGAATG 59.134 33.333 0.00 0.00 0.00 2.67
2659 4494 7.865889 CACGGATTGATGAATGAATGAATGAAT 59.134 33.333 0.00 0.00 0.00 2.57
2660 4495 7.067251 TCACGGATTGATGAATGAATGAATGAA 59.933 33.333 0.00 0.00 0.00 2.57
2661 4496 6.543100 TCACGGATTGATGAATGAATGAATGA 59.457 34.615 0.00 0.00 0.00 2.57
2682 4517 8.808529 CCTACTACAAATAATTTCTCACTCACG 58.191 37.037 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.