Multiple sequence alignment - TraesCS3A01G349100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G349100 chr3A 100.000 3997 0 0 1 3997 597855242 597851246 0.000000e+00 7382.0
1 TraesCS3A01G349100 chr3A 95.247 526 20 3 1 521 697587140 697586615 0.000000e+00 828.0
2 TraesCS3A01G349100 chr3A 88.800 125 8 5 3116 3238 64733925 64733805 8.950000e-32 148.0
3 TraesCS3A01G349100 chr3D 93.495 2352 90 33 783 3103 455599273 455596954 0.000000e+00 3437.0
4 TraesCS3A01G349100 chr3D 92.280 842 32 10 3100 3909 455596800 455595960 0.000000e+00 1164.0
5 TraesCS3A01G349100 chr3D 93.103 261 15 2 522 779 571896245 571895985 2.920000e-101 379.0
6 TraesCS3A01G349100 chr3D 88.095 126 9 6 3115 3238 53386051 53385930 1.160000e-30 145.0
7 TraesCS3A01G349100 chr3D 92.553 94 7 0 3251 3344 455596467 455596374 6.970000e-28 135.0
8 TraesCS3A01G349100 chr3B 93.484 1105 52 12 861 1952 598975088 598973991 0.000000e+00 1624.0
9 TraesCS3A01G349100 chr3B 92.679 1120 65 11 2004 3112 598973677 598972564 0.000000e+00 1598.0
10 TraesCS3A01G349100 chr3B 92.281 285 10 5 3723 3997 598910631 598910349 1.040000e-105 394.0
11 TraesCS3A01G349100 chr3B 93.536 263 14 3 522 781 721032250 721031988 4.840000e-104 388.0
12 TraesCS3A01G349100 chr3B 85.166 391 41 11 3345 3731 598913608 598913231 6.270000e-103 385.0
13 TraesCS3A01G349100 chr3B 92.424 264 17 3 522 782 688230078 688229815 1.360000e-99 374.0
14 TraesCS3A01G349100 chr3B 92.424 264 17 3 522 782 688289762 688289499 1.360000e-99 374.0
15 TraesCS3A01G349100 chr3B 86.769 325 36 6 3419 3739 598972622 598972301 4.910000e-94 355.0
16 TraesCS3A01G349100 chr3B 86.792 212 26 2 3739 3949 598970144 598969934 6.680000e-58 235.0
17 TraesCS3A01G349100 chr3B 90.000 140 7 4 3100 3238 598913720 598913587 1.480000e-39 174.0
18 TraesCS3A01G349100 chr3B 89.516 124 8 4 3116 3238 83832140 83832021 6.920000e-33 152.0
19 TraesCS3A01G349100 chr3B 90.361 83 7 1 3262 3344 598972621 598972540 1.520000e-19 108.0
20 TraesCS3A01G349100 chr4A 95.619 525 18 4 1 521 634907631 634908154 0.000000e+00 837.0
21 TraesCS3A01G349100 chr7A 95.283 530 16 5 1 521 585234063 585233534 0.000000e+00 832.0
22 TraesCS3A01G349100 chr7A 94.737 532 20 3 1 525 465359337 465359867 0.000000e+00 821.0
23 TraesCS3A01G349100 chr7A 94.877 527 21 5 1 522 685617171 685617696 0.000000e+00 819.0
24 TraesCS3A01G349100 chr5A 95.104 531 19 6 1 524 631559802 631559272 0.000000e+00 830.0
25 TraesCS3A01G349100 chr6A 95.057 526 20 1 2 521 62705457 62705982 0.000000e+00 822.0
26 TraesCS3A01G349100 chr6A 94.837 523 24 2 1 522 607641728 607642248 0.000000e+00 813.0
27 TraesCS3A01G349100 chr6A 92.045 264 19 2 522 783 610649227 610649490 1.750000e-98 370.0
28 TraesCS3A01G349100 chr5B 94.677 526 23 3 1 521 303950386 303950911 0.000000e+00 811.0
29 TraesCS3A01G349100 chr1D 94.615 260 12 2 522 779 463975609 463975868 6.220000e-108 401.0
30 TraesCS3A01G349100 chr1D 93.436 259 15 2 522 778 391362034 391361776 2.250000e-102 383.0
31 TraesCS3A01G349100 chr2D 93.077 260 16 2 522 779 495842444 495842703 2.920000e-101 379.0
32 TraesCS3A01G349100 chr2D 88.976 127 7 5 3115 3238 493001389 493001267 2.490000e-32 150.0
33 TraesCS3A01G349100 chr2D 88.189 127 8 5 3115 3238 492997746 492997624 1.160000e-30 145.0
34 TraesCS3A01G349100 chrUn 91.154 260 21 2 522 779 89949362 89949621 6.360000e-93 351.0
35 TraesCS3A01G349100 chr7D 85.145 276 35 3 1344 1619 591565155 591565424 1.090000e-70 278.0
36 TraesCS3A01G349100 chr7D 94.231 52 2 1 1656 1707 591565436 591565486 1.190000e-10 78.7
37 TraesCS3A01G349100 chr2B 87.805 123 11 3 3116 3238 579570689 579570571 1.500000e-29 141.0
38 TraesCS3A01G349100 chr2B 85.271 129 14 4 3111 3238 579571019 579570895 1.170000e-25 128.0
39 TraesCS3A01G349100 chr6B 100.000 29 0 0 3663 3691 656485997 656486025 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G349100 chr3A 597851246 597855242 3996 True 7382.000000 7382 100.000 1 3997 1 chr3A.!!$R2 3996
1 TraesCS3A01G349100 chr3A 697586615 697587140 525 True 828.000000 828 95.247 1 521 1 chr3A.!!$R3 520
2 TraesCS3A01G349100 chr3D 455595960 455599273 3313 True 1578.666667 3437 92.776 783 3909 3 chr3D.!!$R3 3126
3 TraesCS3A01G349100 chr3B 598969934 598975088 5154 True 784.000000 1624 90.017 861 3949 5 chr3B.!!$R6 3088
4 TraesCS3A01G349100 chr3B 598910349 598913720 3371 True 317.666667 394 89.149 3100 3997 3 chr3B.!!$R5 897
5 TraesCS3A01G349100 chr4A 634907631 634908154 523 False 837.000000 837 95.619 1 521 1 chr4A.!!$F1 520
6 TraesCS3A01G349100 chr7A 585233534 585234063 529 True 832.000000 832 95.283 1 521 1 chr7A.!!$R1 520
7 TraesCS3A01G349100 chr7A 465359337 465359867 530 False 821.000000 821 94.737 1 525 1 chr7A.!!$F1 524
8 TraesCS3A01G349100 chr7A 685617171 685617696 525 False 819.000000 819 94.877 1 522 1 chr7A.!!$F2 521
9 TraesCS3A01G349100 chr5A 631559272 631559802 530 True 830.000000 830 95.104 1 524 1 chr5A.!!$R1 523
10 TraesCS3A01G349100 chr6A 62705457 62705982 525 False 822.000000 822 95.057 2 521 1 chr6A.!!$F1 519
11 TraesCS3A01G349100 chr6A 607641728 607642248 520 False 813.000000 813 94.837 1 522 1 chr6A.!!$F2 521
12 TraesCS3A01G349100 chr5B 303950386 303950911 525 False 811.000000 811 94.677 1 521 1 chr5B.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 990 0.032267 GCGTCATCCTAGGTACAGGC 59.968 60.0 9.08 7.05 35.49 4.85 F
1018 1034 0.110486 TCCTTGCTTCCAGTTCCACC 59.890 55.0 0.00 0.00 0.00 4.61 F
1957 1993 0.316854 GCGCTAGCGTAGTACTCCAC 60.317 60.0 35.21 13.13 42.09 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2643 2964 0.456824 GCAGCTTCGAGATGTCGTCA 60.457 55.000 12.41 0.0 46.85 4.35 R
2769 3090 0.804989 CTGAATGGGAGACGCAAACC 59.195 55.000 0.00 0.0 0.00 3.27 R
3643 4170 1.134401 ACATCACCTAGCCGACCATTG 60.134 52.381 0.00 0.0 0.00 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 116 7.121463 CACTTTCAGAGATACCTGTAGTGTACT 59.879 40.741 1.74 0.00 39.73 2.73
131 135 7.052248 GTGTACTTTTATAGCCACCCAGTTAT 58.948 38.462 0.00 0.00 0.00 1.89
153 157 2.897846 TGACGTTTGGCACACCCG 60.898 61.111 0.00 0.00 39.29 5.28
275 281 3.646637 GCTAGGCTTAGGATTGGGTCTTA 59.353 47.826 4.88 0.00 0.00 2.10
316 326 6.213397 TCCTAATGATGTGATCCCGTTATCAT 59.787 38.462 0.00 0.00 39.45 2.45
334 350 0.394352 ATCCATGGTCAGGAAACCGC 60.394 55.000 12.58 0.00 42.62 5.68
340 356 1.652563 GTCAGGAAACCGCAACCAC 59.347 57.895 0.00 0.00 0.00 4.16
373 389 2.289547 CGAGCTAGTCAACTAGAGGCTC 59.710 54.545 19.03 16.73 46.80 4.70
391 407 2.290323 GCTCACTAGGGACATGGTGTTT 60.290 50.000 0.00 0.00 0.00 2.83
525 541 2.831526 AGGGCATATTTCCAACACCAAC 59.168 45.455 0.00 0.00 0.00 3.77
526 542 2.416701 GGGCATATTTCCAACACCAACG 60.417 50.000 0.00 0.00 0.00 4.10
527 543 2.258755 GCATATTTCCAACACCAACGC 58.741 47.619 0.00 0.00 0.00 4.84
528 544 2.874849 CATATTTCCAACACCAACGCC 58.125 47.619 0.00 0.00 0.00 5.68
529 545 0.875728 TATTTCCAACACCAACGCCG 59.124 50.000 0.00 0.00 0.00 6.46
530 546 0.820074 ATTTCCAACACCAACGCCGA 60.820 50.000 0.00 0.00 0.00 5.54
531 547 1.030488 TTTCCAACACCAACGCCGAA 61.030 50.000 0.00 0.00 0.00 4.30
532 548 1.716826 TTCCAACACCAACGCCGAAC 61.717 55.000 0.00 0.00 0.00 3.95
543 559 2.182030 GCCGAACGAGAGGGTCTG 59.818 66.667 0.00 0.00 0.00 3.51
544 560 2.885861 CCGAACGAGAGGGTCTGG 59.114 66.667 0.00 0.00 0.00 3.86
545 561 2.182030 CGAACGAGAGGGTCTGGC 59.818 66.667 0.00 0.00 0.00 4.85
546 562 2.579738 GAACGAGAGGGTCTGGCC 59.420 66.667 0.00 0.00 0.00 5.36
547 563 3.358076 GAACGAGAGGGTCTGGCCG 62.358 68.421 0.00 0.00 38.44 6.13
556 572 4.500116 GTCTGGCCGGCTCGTCTC 62.500 72.222 28.56 9.02 0.00 3.36
559 575 4.435970 TGGCCGGCTCGTCTCCTA 62.436 66.667 28.56 0.00 0.00 2.94
560 576 3.145551 GGCCGGCTCGTCTCCTAA 61.146 66.667 28.56 0.00 0.00 2.69
561 577 2.104530 GCCGGCTCGTCTCCTAAC 59.895 66.667 22.15 0.00 0.00 2.34
562 578 2.806237 CCGGCTCGTCTCCTAACC 59.194 66.667 0.00 0.00 0.00 2.85
563 579 2.783288 CCGGCTCGTCTCCTAACCC 61.783 68.421 0.00 0.00 0.00 4.11
564 580 1.753463 CGGCTCGTCTCCTAACCCT 60.753 63.158 0.00 0.00 0.00 4.34
565 581 0.465097 CGGCTCGTCTCCTAACCCTA 60.465 60.000 0.00 0.00 0.00 3.53
566 582 1.320507 GGCTCGTCTCCTAACCCTAG 58.679 60.000 0.00 0.00 0.00 3.02
567 583 0.669619 GCTCGTCTCCTAACCCTAGC 59.330 60.000 0.00 0.00 0.00 3.42
568 584 1.751382 GCTCGTCTCCTAACCCTAGCT 60.751 57.143 0.00 0.00 0.00 3.32
569 585 2.657143 CTCGTCTCCTAACCCTAGCTT 58.343 52.381 0.00 0.00 0.00 3.74
570 586 2.619646 CTCGTCTCCTAACCCTAGCTTC 59.380 54.545 0.00 0.00 0.00 3.86
571 587 2.241685 TCGTCTCCTAACCCTAGCTTCT 59.758 50.000 0.00 0.00 0.00 2.85
572 588 2.619646 CGTCTCCTAACCCTAGCTTCTC 59.380 54.545 0.00 0.00 0.00 2.87
573 589 3.633418 GTCTCCTAACCCTAGCTTCTCA 58.367 50.000 0.00 0.00 0.00 3.27
574 590 3.382227 GTCTCCTAACCCTAGCTTCTCAC 59.618 52.174 0.00 0.00 0.00 3.51
575 591 2.359531 CTCCTAACCCTAGCTTCTCACG 59.640 54.545 0.00 0.00 0.00 4.35
576 592 1.409427 CCTAACCCTAGCTTCTCACGG 59.591 57.143 0.00 0.00 0.00 4.94
577 593 2.100989 CTAACCCTAGCTTCTCACGGT 58.899 52.381 0.00 0.00 0.00 4.83
578 594 2.226962 AACCCTAGCTTCTCACGGTA 57.773 50.000 0.00 0.00 0.00 4.02
579 595 1.765230 ACCCTAGCTTCTCACGGTAG 58.235 55.000 0.00 0.00 33.46 3.18
580 596 1.033574 CCCTAGCTTCTCACGGTAGG 58.966 60.000 8.02 8.02 46.88 3.18
584 600 4.657436 CTAGCTTCTCACGGTAGGAAAT 57.343 45.455 0.00 0.00 0.00 2.17
585 601 5.769484 CTAGCTTCTCACGGTAGGAAATA 57.231 43.478 0.00 0.00 0.00 1.40
586 602 4.657436 AGCTTCTCACGGTAGGAAATAG 57.343 45.455 0.00 0.00 0.00 1.73
587 603 4.279145 AGCTTCTCACGGTAGGAAATAGA 58.721 43.478 0.00 0.00 0.00 1.98
588 604 4.710375 AGCTTCTCACGGTAGGAAATAGAA 59.290 41.667 0.00 0.00 0.00 2.10
589 605 5.364157 AGCTTCTCACGGTAGGAAATAGAAT 59.636 40.000 0.00 0.00 0.00 2.40
590 606 5.463724 GCTTCTCACGGTAGGAAATAGAATG 59.536 44.000 0.00 0.00 0.00 2.67
591 607 5.531122 TCTCACGGTAGGAAATAGAATGG 57.469 43.478 0.00 0.00 0.00 3.16
592 608 4.344102 TCTCACGGTAGGAAATAGAATGGG 59.656 45.833 0.00 0.00 0.00 4.00
593 609 3.389983 TCACGGTAGGAAATAGAATGGGG 59.610 47.826 0.00 0.00 0.00 4.96
594 610 3.389983 CACGGTAGGAAATAGAATGGGGA 59.610 47.826 0.00 0.00 0.00 4.81
595 611 4.041691 CACGGTAGGAAATAGAATGGGGAT 59.958 45.833 0.00 0.00 0.00 3.85
596 612 4.663592 ACGGTAGGAAATAGAATGGGGATT 59.336 41.667 0.00 0.00 0.00 3.01
597 613 5.003804 CGGTAGGAAATAGAATGGGGATTG 58.996 45.833 0.00 0.00 0.00 2.67
598 614 5.325239 GGTAGGAAATAGAATGGGGATTGG 58.675 45.833 0.00 0.00 0.00 3.16
599 615 3.849527 AGGAAATAGAATGGGGATTGGC 58.150 45.455 0.00 0.00 0.00 4.52
600 616 3.207321 AGGAAATAGAATGGGGATTGGCA 59.793 43.478 0.00 0.00 0.00 4.92
601 617 4.140615 AGGAAATAGAATGGGGATTGGCAT 60.141 41.667 0.00 0.00 0.00 4.40
602 618 5.076318 AGGAAATAGAATGGGGATTGGCATA 59.924 40.000 0.00 0.00 0.00 3.14
603 619 5.185828 GGAAATAGAATGGGGATTGGCATAC 59.814 44.000 0.00 0.00 0.00 2.39
604 620 5.605540 AATAGAATGGGGATTGGCATACT 57.394 39.130 0.00 0.00 0.00 2.12
605 621 3.234234 AGAATGGGGATTGGCATACTG 57.766 47.619 0.00 0.00 0.00 2.74
606 622 1.615392 GAATGGGGATTGGCATACTGC 59.385 52.381 0.00 0.00 44.08 4.40
607 623 0.855598 ATGGGGATTGGCATACTGCT 59.144 50.000 0.00 0.00 44.28 4.24
608 624 1.517238 TGGGGATTGGCATACTGCTA 58.483 50.000 0.00 0.00 44.28 3.49
609 625 1.142870 TGGGGATTGGCATACTGCTAC 59.857 52.381 0.00 0.00 44.28 3.58
610 626 1.512926 GGGATTGGCATACTGCTACG 58.487 55.000 0.00 0.00 44.28 3.51
611 627 1.512926 GGATTGGCATACTGCTACGG 58.487 55.000 0.00 0.00 44.28 4.02
612 628 1.070134 GGATTGGCATACTGCTACGGA 59.930 52.381 0.00 0.00 44.28 4.69
613 629 2.484770 GGATTGGCATACTGCTACGGAA 60.485 50.000 0.00 0.00 44.28 4.30
614 630 2.772077 TTGGCATACTGCTACGGAAA 57.228 45.000 0.00 0.00 44.28 3.13
615 631 2.772077 TGGCATACTGCTACGGAAAA 57.228 45.000 0.00 0.00 44.28 2.29
616 632 2.627945 TGGCATACTGCTACGGAAAAG 58.372 47.619 0.00 0.00 44.28 2.27
617 633 1.940613 GGCATACTGCTACGGAAAAGG 59.059 52.381 0.00 0.00 44.28 3.11
618 634 2.629051 GCATACTGCTACGGAAAAGGT 58.371 47.619 0.00 0.00 40.96 3.50
619 635 3.431207 GGCATACTGCTACGGAAAAGGTA 60.431 47.826 0.00 0.00 44.28 3.08
620 636 3.554731 GCATACTGCTACGGAAAAGGTAC 59.445 47.826 0.00 0.00 40.96 3.34
621 637 4.751060 CATACTGCTACGGAAAAGGTACA 58.249 43.478 0.00 0.00 0.00 2.90
622 638 3.314541 ACTGCTACGGAAAAGGTACAG 57.685 47.619 0.00 0.00 0.00 2.74
623 639 2.895404 ACTGCTACGGAAAAGGTACAGA 59.105 45.455 0.00 0.00 0.00 3.41
624 640 3.322828 ACTGCTACGGAAAAGGTACAGAA 59.677 43.478 0.00 0.00 0.00 3.02
625 641 3.921677 TGCTACGGAAAAGGTACAGAAG 58.078 45.455 0.00 0.00 0.00 2.85
626 642 3.259902 GCTACGGAAAAGGTACAGAAGG 58.740 50.000 0.00 0.00 0.00 3.46
627 643 2.853235 ACGGAAAAGGTACAGAAGGG 57.147 50.000 0.00 0.00 0.00 3.95
628 644 1.271217 ACGGAAAAGGTACAGAAGGGC 60.271 52.381 0.00 0.00 0.00 5.19
629 645 1.003233 CGGAAAAGGTACAGAAGGGCT 59.997 52.381 0.00 0.00 0.00 5.19
630 646 2.712709 GGAAAAGGTACAGAAGGGCTC 58.287 52.381 0.00 0.00 0.00 4.70
631 647 2.039879 GGAAAAGGTACAGAAGGGCTCA 59.960 50.000 0.00 0.00 0.00 4.26
632 648 3.339141 GAAAAGGTACAGAAGGGCTCAG 58.661 50.000 0.00 0.00 0.00 3.35
633 649 1.280457 AAGGTACAGAAGGGCTCAGG 58.720 55.000 0.00 0.00 0.00 3.86
634 650 0.618968 AGGTACAGAAGGGCTCAGGG 60.619 60.000 0.00 0.00 0.00 4.45
635 651 0.910088 GGTACAGAAGGGCTCAGGGT 60.910 60.000 0.00 0.00 0.00 4.34
636 652 0.537653 GTACAGAAGGGCTCAGGGTC 59.462 60.000 0.00 0.00 0.00 4.46
637 653 0.413832 TACAGAAGGGCTCAGGGTCT 59.586 55.000 0.00 0.00 0.00 3.85
638 654 1.197430 ACAGAAGGGCTCAGGGTCTG 61.197 60.000 5.37 5.37 41.21 3.51
639 655 1.159664 AGAAGGGCTCAGGGTCTGT 59.840 57.895 0.00 0.00 32.61 3.41
640 656 0.413832 AGAAGGGCTCAGGGTCTGTA 59.586 55.000 0.00 0.00 32.61 2.74
641 657 0.537653 GAAGGGCTCAGGGTCTGTAC 59.462 60.000 0.00 0.00 32.61 2.90
642 658 0.910088 AAGGGCTCAGGGTCTGTACC 60.910 60.000 0.00 0.00 45.97 3.34
650 666 3.373226 GGTCTGTACCGAGGTGCA 58.627 61.111 12.29 12.29 38.34 4.57
656 672 2.380084 TGTACCGAGGTGCAGAATTC 57.620 50.000 8.97 0.00 35.90 2.17
657 673 1.899814 TGTACCGAGGTGCAGAATTCT 59.100 47.619 8.97 0.88 35.90 2.40
658 674 2.301870 TGTACCGAGGTGCAGAATTCTT 59.698 45.455 4.86 0.00 35.90 2.52
659 675 1.813513 ACCGAGGTGCAGAATTCTTG 58.186 50.000 4.86 2.98 0.00 3.02
660 676 0.449388 CCGAGGTGCAGAATTCTTGC 59.551 55.000 17.68 17.68 0.00 4.01
661 677 0.095935 CGAGGTGCAGAATTCTTGCG 59.904 55.000 18.64 6.25 0.00 4.85
662 678 0.449388 GAGGTGCAGAATTCTTGCGG 59.551 55.000 18.64 5.96 0.00 5.69
663 679 0.962356 AGGTGCAGAATTCTTGCGGG 60.962 55.000 18.64 5.65 0.00 6.13
664 680 1.244019 GGTGCAGAATTCTTGCGGGT 61.244 55.000 18.64 0.00 0.00 5.28
665 681 0.598065 GTGCAGAATTCTTGCGGGTT 59.402 50.000 18.64 0.00 0.00 4.11
666 682 1.000274 GTGCAGAATTCTTGCGGGTTT 60.000 47.619 18.64 0.00 0.00 3.27
667 683 2.227865 GTGCAGAATTCTTGCGGGTTTA 59.772 45.455 18.64 4.34 0.00 2.01
668 684 2.887783 TGCAGAATTCTTGCGGGTTTAA 59.112 40.909 18.64 3.83 0.00 1.52
669 685 3.509575 TGCAGAATTCTTGCGGGTTTAAT 59.490 39.130 18.64 0.00 0.00 1.40
670 686 4.021544 TGCAGAATTCTTGCGGGTTTAATT 60.022 37.500 18.64 0.00 0.00 1.40
671 687 4.929211 GCAGAATTCTTGCGGGTTTAATTT 59.071 37.500 4.86 0.00 0.00 1.82
672 688 5.163963 GCAGAATTCTTGCGGGTTTAATTTG 60.164 40.000 4.86 0.00 0.00 2.32
673 689 4.929211 AGAATTCTTGCGGGTTTAATTTGC 59.071 37.500 0.88 0.00 0.00 3.68
674 690 3.735237 TTCTTGCGGGTTTAATTTGCA 57.265 38.095 0.00 0.00 0.00 4.08
675 691 3.735237 TCTTGCGGGTTTAATTTGCAA 57.265 38.095 0.00 0.00 42.68 4.08
676 692 4.264460 TCTTGCGGGTTTAATTTGCAAT 57.736 36.364 0.00 0.00 43.74 3.56
677 693 4.636249 TCTTGCGGGTTTAATTTGCAATT 58.364 34.783 0.00 0.00 43.74 2.32
678 694 5.059833 TCTTGCGGGTTTAATTTGCAATTT 58.940 33.333 11.06 11.06 43.74 1.82
679 695 4.739046 TGCGGGTTTAATTTGCAATTTG 57.261 36.364 15.14 0.00 31.69 2.32
680 696 4.130118 TGCGGGTTTAATTTGCAATTTGT 58.870 34.783 15.14 0.00 31.69 2.83
681 697 5.297547 TGCGGGTTTAATTTGCAATTTGTA 58.702 33.333 15.14 2.64 31.69 2.41
682 698 5.177696 TGCGGGTTTAATTTGCAATTTGTAC 59.822 36.000 15.14 12.10 31.69 2.90
683 699 5.177696 GCGGGTTTAATTTGCAATTTGTACA 59.822 36.000 15.14 0.00 0.00 2.90
684 700 6.128418 GCGGGTTTAATTTGCAATTTGTACAT 60.128 34.615 15.14 0.00 0.00 2.29
685 701 7.452231 CGGGTTTAATTTGCAATTTGTACATC 58.548 34.615 15.14 8.69 0.00 3.06
686 702 7.412455 CGGGTTTAATTTGCAATTTGTACATCC 60.412 37.037 15.14 9.60 0.00 3.51
687 703 7.606073 GGGTTTAATTTGCAATTTGTACATCCT 59.394 33.333 15.14 0.00 0.00 3.24
688 704 8.998377 GGTTTAATTTGCAATTTGTACATCCTT 58.002 29.630 15.14 0.00 0.00 3.36
690 706 8.770438 TTAATTTGCAATTTGTACATCCTTCC 57.230 30.769 15.14 0.00 0.00 3.46
691 707 5.798125 TTTGCAATTTGTACATCCTTCCA 57.202 34.783 0.00 0.00 0.00 3.53
692 708 5.999205 TTGCAATTTGTACATCCTTCCAT 57.001 34.783 0.00 0.00 0.00 3.41
693 709 5.581126 TGCAATTTGTACATCCTTCCATC 57.419 39.130 0.00 0.00 0.00 3.51
694 710 5.263599 TGCAATTTGTACATCCTTCCATCT 58.736 37.500 0.00 0.00 0.00 2.90
695 711 5.357878 TGCAATTTGTACATCCTTCCATCTC 59.642 40.000 0.00 0.00 0.00 2.75
696 712 5.357878 GCAATTTGTACATCCTTCCATCTCA 59.642 40.000 0.00 0.00 0.00 3.27
697 713 6.678900 GCAATTTGTACATCCTTCCATCTCAC 60.679 42.308 0.00 0.00 0.00 3.51
698 714 5.497464 TTTGTACATCCTTCCATCTCACA 57.503 39.130 0.00 0.00 0.00 3.58
699 715 4.743057 TGTACATCCTTCCATCTCACAG 57.257 45.455 0.00 0.00 0.00 3.66
700 716 2.706339 ACATCCTTCCATCTCACAGC 57.294 50.000 0.00 0.00 0.00 4.40
701 717 1.911357 ACATCCTTCCATCTCACAGCA 59.089 47.619 0.00 0.00 0.00 4.41
702 718 2.286872 CATCCTTCCATCTCACAGCAC 58.713 52.381 0.00 0.00 0.00 4.40
703 719 1.351076 TCCTTCCATCTCACAGCACA 58.649 50.000 0.00 0.00 0.00 4.57
704 720 1.002430 TCCTTCCATCTCACAGCACAC 59.998 52.381 0.00 0.00 0.00 3.82
705 721 1.271001 CCTTCCATCTCACAGCACACA 60.271 52.381 0.00 0.00 0.00 3.72
706 722 2.617276 CCTTCCATCTCACAGCACACAT 60.617 50.000 0.00 0.00 0.00 3.21
707 723 2.865119 TCCATCTCACAGCACACATT 57.135 45.000 0.00 0.00 0.00 2.71
708 724 3.144657 TCCATCTCACAGCACACATTT 57.855 42.857 0.00 0.00 0.00 2.32
709 725 3.489355 TCCATCTCACAGCACACATTTT 58.511 40.909 0.00 0.00 0.00 1.82
710 726 3.503363 TCCATCTCACAGCACACATTTTC 59.497 43.478 0.00 0.00 0.00 2.29
711 727 3.366679 CCATCTCACAGCACACATTTTCC 60.367 47.826 0.00 0.00 0.00 3.13
712 728 2.929641 TCTCACAGCACACATTTTCCA 58.070 42.857 0.00 0.00 0.00 3.53
713 729 3.489355 TCTCACAGCACACATTTTCCAT 58.511 40.909 0.00 0.00 0.00 3.41
714 730 3.503363 TCTCACAGCACACATTTTCCATC 59.497 43.478 0.00 0.00 0.00 3.51
715 731 2.557924 TCACAGCACACATTTTCCATCC 59.442 45.455 0.00 0.00 0.00 3.51
716 732 2.296752 CACAGCACACATTTTCCATCCA 59.703 45.455 0.00 0.00 0.00 3.41
717 733 2.964464 ACAGCACACATTTTCCATCCAA 59.036 40.909 0.00 0.00 0.00 3.53
718 734 3.243839 ACAGCACACATTTTCCATCCAAC 60.244 43.478 0.00 0.00 0.00 3.77
719 735 2.030007 AGCACACATTTTCCATCCAACG 60.030 45.455 0.00 0.00 0.00 4.10
720 736 2.926159 GCACACATTTTCCATCCAACGG 60.926 50.000 0.00 0.00 0.00 4.44
721 737 1.272212 ACACATTTTCCATCCAACGGC 59.728 47.619 0.00 0.00 0.00 5.68
722 738 1.271934 CACATTTTCCATCCAACGGCA 59.728 47.619 0.00 0.00 0.00 5.69
723 739 1.272212 ACATTTTCCATCCAACGGCAC 59.728 47.619 0.00 0.00 0.00 5.01
724 740 1.271934 CATTTTCCATCCAACGGCACA 59.728 47.619 0.00 0.00 0.00 4.57
725 741 1.403814 TTTTCCATCCAACGGCACAA 58.596 45.000 0.00 0.00 0.00 3.33
726 742 0.958091 TTTCCATCCAACGGCACAAG 59.042 50.000 0.00 0.00 0.00 3.16
727 743 0.109532 TTCCATCCAACGGCACAAGA 59.890 50.000 0.00 0.00 0.00 3.02
728 744 0.605319 TCCATCCAACGGCACAAGAC 60.605 55.000 0.00 0.00 0.00 3.01
729 745 1.586154 CCATCCAACGGCACAAGACC 61.586 60.000 0.00 0.00 0.00 3.85
730 746 0.888736 CATCCAACGGCACAAGACCA 60.889 55.000 0.00 0.00 0.00 4.02
731 747 0.179004 ATCCAACGGCACAAGACCAA 60.179 50.000 0.00 0.00 0.00 3.67
732 748 0.817634 TCCAACGGCACAAGACCAAG 60.818 55.000 0.00 0.00 0.00 3.61
733 749 1.101049 CCAACGGCACAAGACCAAGT 61.101 55.000 0.00 0.00 0.00 3.16
734 750 0.738389 CAACGGCACAAGACCAAGTT 59.262 50.000 0.00 0.00 0.00 2.66
735 751 1.134175 CAACGGCACAAGACCAAGTTT 59.866 47.619 0.00 0.00 0.00 2.66
736 752 1.470051 ACGGCACAAGACCAAGTTTT 58.530 45.000 0.00 0.00 0.00 2.43
737 753 1.404035 ACGGCACAAGACCAAGTTTTC 59.596 47.619 0.00 0.00 0.00 2.29
738 754 1.403679 CGGCACAAGACCAAGTTTTCA 59.596 47.619 0.00 0.00 0.00 2.69
739 755 2.541588 CGGCACAAGACCAAGTTTTCAG 60.542 50.000 0.00 0.00 0.00 3.02
740 756 2.223805 GGCACAAGACCAAGTTTTCAGG 60.224 50.000 0.00 0.00 0.00 3.86
741 757 2.427095 GCACAAGACCAAGTTTTCAGGT 59.573 45.455 0.00 0.00 38.63 4.00
742 758 3.119137 GCACAAGACCAAGTTTTCAGGTT 60.119 43.478 0.00 0.00 35.36 3.50
743 759 4.620567 GCACAAGACCAAGTTTTCAGGTTT 60.621 41.667 0.00 0.00 35.36 3.27
744 760 5.478407 CACAAGACCAAGTTTTCAGGTTTT 58.522 37.500 0.00 0.00 35.36 2.43
745 761 5.576774 CACAAGACCAAGTTTTCAGGTTTTC 59.423 40.000 0.00 0.00 35.36 2.29
746 762 4.632538 AGACCAAGTTTTCAGGTTTTCG 57.367 40.909 0.00 0.00 35.36 3.46
747 763 3.113322 GACCAAGTTTTCAGGTTTTCGC 58.887 45.455 0.00 0.00 35.36 4.70
748 764 2.758423 ACCAAGTTTTCAGGTTTTCGCT 59.242 40.909 0.00 0.00 29.58 4.93
749 765 3.115554 CCAAGTTTTCAGGTTTTCGCTG 58.884 45.455 0.00 0.00 0.00 5.18
750 766 3.115554 CAAGTTTTCAGGTTTTCGCTGG 58.884 45.455 0.00 0.00 0.00 4.85
751 767 2.650322 AGTTTTCAGGTTTTCGCTGGA 58.350 42.857 0.00 0.00 0.00 3.86
752 768 3.222603 AGTTTTCAGGTTTTCGCTGGAT 58.777 40.909 0.00 0.00 0.00 3.41
753 769 3.004734 AGTTTTCAGGTTTTCGCTGGATG 59.995 43.478 0.00 0.00 0.00 3.51
754 770 2.270352 TTCAGGTTTTCGCTGGATGT 57.730 45.000 0.00 0.00 0.00 3.06
755 771 3.410631 TTCAGGTTTTCGCTGGATGTA 57.589 42.857 0.00 0.00 0.00 2.29
756 772 2.695359 TCAGGTTTTCGCTGGATGTAC 58.305 47.619 0.00 0.00 0.00 2.90
757 773 1.393539 CAGGTTTTCGCTGGATGTACG 59.606 52.381 0.00 0.00 0.00 3.67
758 774 0.725117 GGTTTTCGCTGGATGTACGG 59.275 55.000 0.00 0.00 0.00 4.02
759 775 1.435577 GTTTTCGCTGGATGTACGGT 58.564 50.000 0.00 0.00 0.00 4.83
760 776 1.802365 GTTTTCGCTGGATGTACGGTT 59.198 47.619 0.00 0.00 0.00 4.44
761 777 2.172851 TTTCGCTGGATGTACGGTTT 57.827 45.000 0.00 0.00 0.00 3.27
762 778 1.717194 TTCGCTGGATGTACGGTTTC 58.283 50.000 0.00 0.00 0.00 2.78
763 779 0.108520 TCGCTGGATGTACGGTTTCC 60.109 55.000 0.00 0.00 0.00 3.13
764 780 0.390603 CGCTGGATGTACGGTTTCCA 60.391 55.000 6.52 6.52 37.20 3.53
765 781 1.084289 GCTGGATGTACGGTTTCCAC 58.916 55.000 3.35 0.00 34.65 4.02
766 782 1.734163 CTGGATGTACGGTTTCCACC 58.266 55.000 3.35 0.00 40.16 4.61
767 783 1.002659 CTGGATGTACGGTTTCCACCA 59.997 52.381 3.35 0.00 44.53 4.17
768 784 1.002659 TGGATGTACGGTTTCCACCAG 59.997 52.381 3.35 0.00 44.53 4.00
769 785 1.276989 GGATGTACGGTTTCCACCAGA 59.723 52.381 0.00 0.00 44.53 3.86
770 786 2.093128 GGATGTACGGTTTCCACCAGAT 60.093 50.000 0.00 0.00 44.53 2.90
771 787 2.465860 TGTACGGTTTCCACCAGATG 57.534 50.000 0.00 0.00 44.53 2.90
772 788 1.695242 TGTACGGTTTCCACCAGATGT 59.305 47.619 0.00 0.00 44.53 3.06
773 789 2.073816 GTACGGTTTCCACCAGATGTG 58.926 52.381 0.00 0.00 44.53 3.21
774 790 0.472471 ACGGTTTCCACCAGATGTGT 59.528 50.000 0.00 0.00 44.53 3.72
775 791 1.695242 ACGGTTTCCACCAGATGTGTA 59.305 47.619 0.00 0.00 44.53 2.90
776 792 2.073816 CGGTTTCCACCAGATGTGTAC 58.926 52.381 0.00 0.00 44.53 2.90
777 793 2.289444 CGGTTTCCACCAGATGTGTACT 60.289 50.000 0.00 0.00 44.53 2.73
778 794 3.335579 GGTTTCCACCAGATGTGTACTC 58.664 50.000 0.00 0.00 43.85 2.59
779 795 2.993899 GTTTCCACCAGATGTGTACTCG 59.006 50.000 0.00 0.00 43.85 4.18
780 796 1.919240 TCCACCAGATGTGTACTCGT 58.081 50.000 0.00 0.00 43.85 4.18
781 797 1.544246 TCCACCAGATGTGTACTCGTG 59.456 52.381 0.00 0.00 43.85 4.35
782 798 1.350193 CACCAGATGTGTACTCGTGC 58.650 55.000 0.00 0.00 40.26 5.34
783 799 0.109272 ACCAGATGTGTACTCGTGCG 60.109 55.000 0.00 0.00 0.00 5.34
784 800 0.802222 CCAGATGTGTACTCGTGCGG 60.802 60.000 0.00 0.00 0.00 5.69
785 801 0.109272 CAGATGTGTACTCGTGCGGT 60.109 55.000 0.00 0.00 0.00 5.68
786 802 0.109272 AGATGTGTACTCGTGCGGTG 60.109 55.000 0.00 0.00 0.00 4.94
787 803 0.388134 GATGTGTACTCGTGCGGTGT 60.388 55.000 0.00 0.00 0.00 4.16
788 804 0.666274 ATGTGTACTCGTGCGGTGTG 60.666 55.000 0.00 0.00 0.00 3.82
791 807 2.355363 TACTCGTGCGGTGTGTGC 60.355 61.111 0.00 0.00 0.00 4.57
812 828 2.667536 CGCACTTCTGGCAGCACT 60.668 61.111 10.34 0.00 0.00 4.40
936 952 2.203056 TGATTGCCCGATCCAGCG 60.203 61.111 0.00 0.00 0.00 5.18
973 989 1.693627 AGCGTCATCCTAGGTACAGG 58.306 55.000 9.08 0.00 37.00 4.00
974 990 0.032267 GCGTCATCCTAGGTACAGGC 59.968 60.000 9.08 7.05 35.49 4.85
975 991 0.311165 CGTCATCCTAGGTACAGGCG 59.689 60.000 9.08 6.88 35.49 5.52
976 992 1.400737 GTCATCCTAGGTACAGGCGT 58.599 55.000 9.08 0.00 35.49 5.68
977 993 2.579873 GTCATCCTAGGTACAGGCGTA 58.420 52.381 9.08 0.00 35.49 4.42
978 994 2.292845 GTCATCCTAGGTACAGGCGTAC 59.707 54.545 9.08 9.98 46.18 3.67
1002 1018 1.556911 CATTAGCCAGACACCACTCCT 59.443 52.381 0.00 0.00 0.00 3.69
1016 1032 1.140312 ACTCCTTGCTTCCAGTTCCA 58.860 50.000 0.00 0.00 0.00 3.53
1018 1034 0.110486 TCCTTGCTTCCAGTTCCACC 59.890 55.000 0.00 0.00 0.00 4.61
1019 1035 0.895559 CCTTGCTTCCAGTTCCACCC 60.896 60.000 0.00 0.00 0.00 4.61
1021 1037 2.359975 GCTTCCAGTTCCACCCCG 60.360 66.667 0.00 0.00 0.00 5.73
1039 1072 1.874466 GCGCTCGTAGAAGCACCTC 60.874 63.158 0.00 0.00 39.48 3.85
1081 1114 4.473520 TAAGCCAGCCTGCTCCGC 62.474 66.667 0.00 0.00 41.80 5.54
1188 1221 1.860078 GTCGACTTCAAGCCCAACG 59.140 57.895 8.70 0.00 0.00 4.10
1736 1769 3.616721 AGGACGGCTCTGCACGTT 61.617 61.111 1.39 0.00 44.24 3.99
1878 1911 6.035758 CGTAAGTATACCTCTGTCCTTTTTGC 59.964 42.308 0.00 0.00 0.00 3.68
1939 1975 4.816786 ATGGACAAAAATTGCACTTTGC 57.183 36.364 2.45 2.93 45.29 3.68
1955 1991 4.918535 GCGCTAGCGTAGTACTCC 57.081 61.111 35.21 14.59 42.09 3.85
1956 1992 2.020131 GCGCTAGCGTAGTACTCCA 58.980 57.895 35.21 0.00 42.09 3.86
1957 1993 0.316854 GCGCTAGCGTAGTACTCCAC 60.317 60.000 35.21 13.13 42.09 4.02
1958 1994 1.297664 CGCTAGCGTAGTACTCCACT 58.702 55.000 28.66 0.00 41.62 4.00
1959 1995 2.477825 CGCTAGCGTAGTACTCCACTA 58.522 52.381 28.66 0.00 38.80 2.74
1960 1996 2.475864 CGCTAGCGTAGTACTCCACTAG 59.524 54.545 28.66 16.23 40.48 2.57
1961 1997 3.465871 GCTAGCGTAGTACTCCACTAGT 58.534 50.000 19.32 0.00 40.48 2.57
1962 1998 4.626042 GCTAGCGTAGTACTCCACTAGTA 58.374 47.826 19.32 0.00 40.48 1.82
1963 1999 5.053145 GCTAGCGTAGTACTCCACTAGTAA 58.947 45.833 19.32 0.00 42.37 2.24
1964 2000 5.525378 GCTAGCGTAGTACTCCACTAGTAAA 59.475 44.000 19.32 0.00 42.37 2.01
1983 2019 3.658757 AAAAACCAACCACCATGATCG 57.341 42.857 0.00 0.00 0.00 3.69
1987 2023 0.392863 CCAACCACCATGATCGCAGA 60.393 55.000 0.00 0.00 45.75 4.26
2035 2344 1.946768 CTCGAAGGTGGCAAGAACAAA 59.053 47.619 0.00 0.00 0.00 2.83
2050 2359 6.476380 GCAAGAACAAATTGTCATGTCAGAAA 59.524 34.615 0.00 0.00 0.00 2.52
2139 2450 0.743097 GGGCTGGGTACTGTACGTAG 59.257 60.000 11.52 12.28 0.00 3.51
2200 2511 3.254166 ACACACAGCATCCAATGTTCTTC 59.746 43.478 0.00 0.00 0.00 2.87
2207 2518 3.181506 GCATCCAATGTTCTTCGGTCTTC 60.182 47.826 0.00 0.00 0.00 2.87
2211 2522 4.527038 TCCAATGTTCTTCGGTCTTCTACT 59.473 41.667 0.00 0.00 0.00 2.57
2212 2523 4.865365 CCAATGTTCTTCGGTCTTCTACTC 59.135 45.833 0.00 0.00 0.00 2.59
2216 2536 5.909477 TGTTCTTCGGTCTTCTACTCAAAA 58.091 37.500 0.00 0.00 0.00 2.44
2217 2537 5.751990 TGTTCTTCGGTCTTCTACTCAAAAC 59.248 40.000 0.00 0.00 0.00 2.43
2227 2547 6.761714 GTCTTCTACTCAAAACTTCACTCCAA 59.238 38.462 0.00 0.00 0.00 3.53
2228 2548 7.442666 GTCTTCTACTCAAAACTTCACTCCAAT 59.557 37.037 0.00 0.00 0.00 3.16
2229 2549 7.657761 TCTTCTACTCAAAACTTCACTCCAATC 59.342 37.037 0.00 0.00 0.00 2.67
2230 2550 7.067496 TCTACTCAAAACTTCACTCCAATCT 57.933 36.000 0.00 0.00 0.00 2.40
2231 2551 7.155328 TCTACTCAAAACTTCACTCCAATCTC 58.845 38.462 0.00 0.00 0.00 2.75
2232 2552 4.752101 ACTCAAAACTTCACTCCAATCTCG 59.248 41.667 0.00 0.00 0.00 4.04
2234 2554 4.511454 TCAAAACTTCACTCCAATCTCGTG 59.489 41.667 0.00 0.00 0.00 4.35
2235 2555 3.753294 AACTTCACTCCAATCTCGTGT 57.247 42.857 0.00 0.00 0.00 4.49
2236 2556 4.866508 AACTTCACTCCAATCTCGTGTA 57.133 40.909 0.00 0.00 0.00 2.90
2251 2572 5.260900 TCTCGTGTAAGAATGTAACGATCG 58.739 41.667 14.88 14.88 41.85 3.69
2276 2597 1.535088 GCTTTTCTTGCCGATTACGC 58.465 50.000 0.00 0.00 38.29 4.42
2286 2607 1.209275 CCGATTACGCGCAGAAGGAG 61.209 60.000 5.73 0.00 38.29 3.69
2656 2977 0.952280 GGGCTATGACGACATCTCGA 59.048 55.000 3.03 0.00 43.06 4.04
2769 3090 2.936919 TATCCTGTGCATAAGGCCTG 57.063 50.000 5.69 0.00 43.89 4.85
2782 3104 3.056328 GCCTGGTTTGCGTCTCCC 61.056 66.667 0.00 0.00 0.00 4.30
2796 3118 3.452474 CGTCTCCCATTCAGAGTTGATC 58.548 50.000 0.00 0.00 32.27 2.92
2805 3127 3.385193 TCAGAGTTGATCGCAAAGACA 57.615 42.857 0.00 0.00 35.42 3.41
2920 3252 3.634397 TCCCCTGAGCAGTTCTAAATG 57.366 47.619 0.00 0.00 0.00 2.32
3211 3704 3.202818 TGGTCTGATATGCCAAAGGTCAT 59.797 43.478 0.00 0.00 0.00 3.06
3247 3748 1.017387 GGGACCAATTGCGATGACTC 58.983 55.000 0.00 0.00 0.00 3.36
3495 4018 2.653726 TGCTCAAACCAGAAAGCAGAA 58.346 42.857 0.00 0.00 39.69 3.02
3512 4035 5.994250 AGCAGAATAGGCAGACTTTATTCA 58.006 37.500 2.19 0.00 36.64 2.57
3519 4042 8.814038 AATAGGCAGACTTTATTCAATGTTCT 57.186 30.769 0.00 0.00 0.00 3.01
3523 4046 8.897752 AGGCAGACTTTATTCAATGTTCTATTC 58.102 33.333 0.00 0.00 0.00 1.75
3524 4047 8.677300 GGCAGACTTTATTCAATGTTCTATTCA 58.323 33.333 0.00 0.00 0.00 2.57
3721 4249 3.077359 CTGGTGACTTCTTTTAGCCAGG 58.923 50.000 0.00 0.00 38.56 4.45
3758 7616 8.023706 TCTGTAAATGATCTCGATACTGTATGC 58.976 37.037 4.79 0.00 0.00 3.14
3900 7758 6.640907 CACTAGTGGAAATTGCACCTTAAAAC 59.359 38.462 15.49 0.00 39.72 2.43
3963 7829 5.221342 CCACTGGTCCTATCTAGAACATCAC 60.221 48.000 0.00 0.00 28.68 3.06
3979 7845 8.410673 AGAACATCACTACTAGAAACTGAGAA 57.589 34.615 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 0.044855 AGGTATCTCTGGGCCCACTT 59.955 55.000 24.45 2.84 0.00 3.16
112 116 6.151985 CACAACATAACTGGGTGGCTATAAAA 59.848 38.462 0.00 0.00 31.75 1.52
131 135 0.169230 GTGTGCCAAACGTCACAACA 59.831 50.000 9.13 0.00 43.78 3.33
225 229 7.667043 AGATCATGTAGTTCGTTTGCTAAAA 57.333 32.000 0.00 0.00 0.00 1.52
275 281 7.325725 TCATTAGGAGAATGATGTGATGGAT 57.674 36.000 0.00 0.00 32.21 3.41
316 326 1.002624 GCGGTTTCCTGACCATGGA 60.003 57.895 21.47 0.00 39.78 3.41
334 350 3.063997 GCTCGTTGATCAATAGGTGGTTG 59.936 47.826 12.12 0.00 0.00 3.77
340 356 5.188327 TGACTAGCTCGTTGATCAATAGG 57.812 43.478 12.12 4.69 0.00 2.57
373 389 4.021102 AGAAAACACCATGTCCCTAGTG 57.979 45.455 0.00 0.00 36.30 2.74
525 541 3.441290 AGACCCTCTCGTTCGGCG 61.441 66.667 0.00 0.00 43.01 6.46
526 542 2.182030 CAGACCCTCTCGTTCGGC 59.818 66.667 0.00 0.00 0.00 5.54
527 543 2.885861 CCAGACCCTCTCGTTCGG 59.114 66.667 0.00 0.00 0.00 4.30
528 544 2.182030 GCCAGACCCTCTCGTTCG 59.818 66.667 0.00 0.00 0.00 3.95
529 545 2.579738 GGCCAGACCCTCTCGTTC 59.420 66.667 0.00 0.00 0.00 3.95
530 546 3.382832 CGGCCAGACCCTCTCGTT 61.383 66.667 2.24 0.00 33.26 3.85
539 555 4.500116 GAGACGAGCCGGCCAGAC 62.500 72.222 26.15 17.67 34.11 3.51
542 558 3.949885 TTAGGAGACGAGCCGGCCA 62.950 63.158 26.15 0.00 34.11 5.36
543 559 3.145551 TTAGGAGACGAGCCGGCC 61.146 66.667 26.15 14.23 34.11 6.13
544 560 2.104530 GTTAGGAGACGAGCCGGC 59.895 66.667 21.89 21.89 33.59 6.13
545 561 2.783288 GGGTTAGGAGACGAGCCGG 61.783 68.421 0.00 0.00 37.20 6.13
546 562 0.465097 TAGGGTTAGGAGACGAGCCG 60.465 60.000 0.00 0.00 41.72 5.52
547 563 1.320507 CTAGGGTTAGGAGACGAGCC 58.679 60.000 0.00 0.00 38.63 4.70
548 564 0.669619 GCTAGGGTTAGGAGACGAGC 59.330 60.000 0.00 0.00 0.00 5.03
549 565 2.351706 AGCTAGGGTTAGGAGACGAG 57.648 55.000 0.00 0.00 0.00 4.18
550 566 2.241685 AGAAGCTAGGGTTAGGAGACGA 59.758 50.000 0.00 0.00 0.00 4.20
551 567 2.619646 GAGAAGCTAGGGTTAGGAGACG 59.380 54.545 0.00 0.00 0.00 4.18
552 568 3.382227 GTGAGAAGCTAGGGTTAGGAGAC 59.618 52.174 0.00 0.00 0.00 3.36
553 569 3.633418 GTGAGAAGCTAGGGTTAGGAGA 58.367 50.000 0.00 0.00 0.00 3.71
554 570 2.359531 CGTGAGAAGCTAGGGTTAGGAG 59.640 54.545 0.00 0.00 0.00 3.69
555 571 2.376109 CGTGAGAAGCTAGGGTTAGGA 58.624 52.381 0.00 0.00 0.00 2.94
556 572 1.409427 CCGTGAGAAGCTAGGGTTAGG 59.591 57.143 0.00 0.00 0.00 2.69
557 573 2.100989 ACCGTGAGAAGCTAGGGTTAG 58.899 52.381 0.00 0.00 31.48 2.34
558 574 2.226962 ACCGTGAGAAGCTAGGGTTA 57.773 50.000 0.00 0.00 31.48 2.85
559 575 2.100989 CTACCGTGAGAAGCTAGGGTT 58.899 52.381 4.04 0.00 36.54 4.11
560 576 1.685491 CCTACCGTGAGAAGCTAGGGT 60.685 57.143 4.17 4.17 38.49 4.34
561 577 1.033574 CCTACCGTGAGAAGCTAGGG 58.966 60.000 0.00 0.00 0.00 3.53
562 578 2.054232 TCCTACCGTGAGAAGCTAGG 57.946 55.000 0.00 0.00 0.00 3.02
563 579 4.657436 ATTTCCTACCGTGAGAAGCTAG 57.343 45.455 0.00 0.00 0.00 3.42
564 580 5.443283 TCTATTTCCTACCGTGAGAAGCTA 58.557 41.667 0.00 0.00 0.00 3.32
565 581 4.279145 TCTATTTCCTACCGTGAGAAGCT 58.721 43.478 0.00 0.00 0.00 3.74
566 582 4.650754 TCTATTTCCTACCGTGAGAAGC 57.349 45.455 0.00 0.00 0.00 3.86
567 583 5.986135 CCATTCTATTTCCTACCGTGAGAAG 59.014 44.000 0.00 0.00 0.00 2.85
568 584 5.163343 CCCATTCTATTTCCTACCGTGAGAA 60.163 44.000 0.00 0.00 0.00 2.87
569 585 4.344102 CCCATTCTATTTCCTACCGTGAGA 59.656 45.833 0.00 0.00 0.00 3.27
570 586 4.503296 CCCCATTCTATTTCCTACCGTGAG 60.503 50.000 0.00 0.00 0.00 3.51
571 587 3.389983 CCCCATTCTATTTCCTACCGTGA 59.610 47.826 0.00 0.00 0.00 4.35
572 588 3.389983 TCCCCATTCTATTTCCTACCGTG 59.610 47.826 0.00 0.00 0.00 4.94
573 589 3.660959 TCCCCATTCTATTTCCTACCGT 58.339 45.455 0.00 0.00 0.00 4.83
574 590 4.910458 ATCCCCATTCTATTTCCTACCG 57.090 45.455 0.00 0.00 0.00 4.02
575 591 5.325239 CCAATCCCCATTCTATTTCCTACC 58.675 45.833 0.00 0.00 0.00 3.18
576 592 4.767409 GCCAATCCCCATTCTATTTCCTAC 59.233 45.833 0.00 0.00 0.00 3.18
577 593 4.418526 TGCCAATCCCCATTCTATTTCCTA 59.581 41.667 0.00 0.00 0.00 2.94
578 594 3.207321 TGCCAATCCCCATTCTATTTCCT 59.793 43.478 0.00 0.00 0.00 3.36
579 595 3.575805 TGCCAATCCCCATTCTATTTCC 58.424 45.455 0.00 0.00 0.00 3.13
580 596 6.012745 AGTATGCCAATCCCCATTCTATTTC 58.987 40.000 0.00 0.00 0.00 2.17
581 597 5.776716 CAGTATGCCAATCCCCATTCTATTT 59.223 40.000 0.00 0.00 0.00 1.40
582 598 5.327732 CAGTATGCCAATCCCCATTCTATT 58.672 41.667 0.00 0.00 0.00 1.73
583 599 4.927049 CAGTATGCCAATCCCCATTCTAT 58.073 43.478 0.00 0.00 0.00 1.98
584 600 4.371624 CAGTATGCCAATCCCCATTCTA 57.628 45.455 0.00 0.00 0.00 2.10
585 601 3.234234 CAGTATGCCAATCCCCATTCT 57.766 47.619 0.00 0.00 0.00 2.40
599 615 4.751060 TGTACCTTTTCCGTAGCAGTATG 58.249 43.478 0.00 0.00 40.87 2.39
600 616 4.708421 TCTGTACCTTTTCCGTAGCAGTAT 59.292 41.667 0.00 0.00 0.00 2.12
601 617 4.081406 TCTGTACCTTTTCCGTAGCAGTA 58.919 43.478 0.00 0.00 0.00 2.74
602 618 2.895404 TCTGTACCTTTTCCGTAGCAGT 59.105 45.455 0.00 0.00 0.00 4.40
603 619 3.587797 TCTGTACCTTTTCCGTAGCAG 57.412 47.619 0.00 0.00 0.00 4.24
604 620 3.306502 CCTTCTGTACCTTTTCCGTAGCA 60.307 47.826 0.00 0.00 0.00 3.49
605 621 3.259902 CCTTCTGTACCTTTTCCGTAGC 58.740 50.000 0.00 0.00 0.00 3.58
606 622 3.858247 CCCTTCTGTACCTTTTCCGTAG 58.142 50.000 0.00 0.00 0.00 3.51
607 623 2.027837 GCCCTTCTGTACCTTTTCCGTA 60.028 50.000 0.00 0.00 0.00 4.02
608 624 1.271217 GCCCTTCTGTACCTTTTCCGT 60.271 52.381 0.00 0.00 0.00 4.69
609 625 1.003233 AGCCCTTCTGTACCTTTTCCG 59.997 52.381 0.00 0.00 0.00 4.30
610 626 2.039879 TGAGCCCTTCTGTACCTTTTCC 59.960 50.000 0.00 0.00 0.00 3.13
611 627 3.339141 CTGAGCCCTTCTGTACCTTTTC 58.661 50.000 0.00 0.00 0.00 2.29
612 628 2.040412 CCTGAGCCCTTCTGTACCTTTT 59.960 50.000 0.00 0.00 0.00 2.27
613 629 1.630878 CCTGAGCCCTTCTGTACCTTT 59.369 52.381 0.00 0.00 0.00 3.11
614 630 1.280457 CCTGAGCCCTTCTGTACCTT 58.720 55.000 0.00 0.00 0.00 3.50
615 631 0.618968 CCCTGAGCCCTTCTGTACCT 60.619 60.000 0.00 0.00 0.00 3.08
616 632 0.910088 ACCCTGAGCCCTTCTGTACC 60.910 60.000 0.00 0.00 0.00 3.34
617 633 0.537653 GACCCTGAGCCCTTCTGTAC 59.462 60.000 0.00 0.00 0.00 2.90
618 634 0.413832 AGACCCTGAGCCCTTCTGTA 59.586 55.000 0.00 0.00 0.00 2.74
619 635 1.159664 AGACCCTGAGCCCTTCTGT 59.840 57.895 0.00 0.00 0.00 3.41
620 636 1.197430 ACAGACCCTGAGCCCTTCTG 61.197 60.000 0.45 0.00 39.72 3.02
621 637 0.413832 TACAGACCCTGAGCCCTTCT 59.586 55.000 0.45 0.00 35.18 2.85
622 638 0.537653 GTACAGACCCTGAGCCCTTC 59.462 60.000 0.45 0.00 35.18 3.46
623 639 0.910088 GGTACAGACCCTGAGCCCTT 60.910 60.000 0.45 0.00 40.23 3.95
624 640 1.306226 GGTACAGACCCTGAGCCCT 60.306 63.158 0.45 0.00 40.23 5.19
625 641 2.722201 CGGTACAGACCCTGAGCCC 61.722 68.421 0.45 0.00 43.64 5.19
626 642 1.668101 CTCGGTACAGACCCTGAGCC 61.668 65.000 0.45 2.05 43.64 4.70
627 643 1.668101 CCTCGGTACAGACCCTGAGC 61.668 65.000 0.45 0.00 43.64 4.26
628 644 0.323542 ACCTCGGTACAGACCCTGAG 60.324 60.000 0.45 0.00 43.64 3.35
629 645 0.611062 CACCTCGGTACAGACCCTGA 60.611 60.000 0.45 0.00 43.64 3.86
630 646 1.890894 CACCTCGGTACAGACCCTG 59.109 63.158 0.00 0.00 43.64 4.45
631 647 1.982938 GCACCTCGGTACAGACCCT 60.983 63.158 0.00 0.00 43.64 4.34
632 648 2.227089 CTGCACCTCGGTACAGACCC 62.227 65.000 10.21 0.00 43.64 4.46
633 649 1.215647 CTGCACCTCGGTACAGACC 59.784 63.158 10.21 0.00 40.86 3.85
634 650 0.601558 TTCTGCACCTCGGTACAGAC 59.398 55.000 16.62 0.00 45.09 3.51
635 651 1.557099 ATTCTGCACCTCGGTACAGA 58.443 50.000 13.68 13.68 44.13 3.41
636 652 2.093973 AGAATTCTGCACCTCGGTACAG 60.094 50.000 7.30 9.59 40.01 2.74
637 653 1.899814 AGAATTCTGCACCTCGGTACA 59.100 47.619 7.30 0.00 0.00 2.90
638 654 2.673368 CAAGAATTCTGCACCTCGGTAC 59.327 50.000 9.17 0.00 0.00 3.34
639 655 2.935238 GCAAGAATTCTGCACCTCGGTA 60.935 50.000 9.17 0.00 0.00 4.02
640 656 1.813513 CAAGAATTCTGCACCTCGGT 58.186 50.000 9.17 0.00 0.00 4.69
641 657 0.449388 GCAAGAATTCTGCACCTCGG 59.551 55.000 9.17 0.00 0.00 4.63
642 658 0.095935 CGCAAGAATTCTGCACCTCG 59.904 55.000 21.68 11.39 43.02 4.63
643 659 0.449388 CCGCAAGAATTCTGCACCTC 59.551 55.000 21.68 5.31 43.02 3.85
644 660 0.962356 CCCGCAAGAATTCTGCACCT 60.962 55.000 21.68 1.62 43.02 4.00
645 661 1.244019 ACCCGCAAGAATTCTGCACC 61.244 55.000 21.68 7.43 43.02 5.01
646 662 0.598065 AACCCGCAAGAATTCTGCAC 59.402 50.000 21.68 10.23 43.02 4.57
647 663 1.327303 AAACCCGCAAGAATTCTGCA 58.673 45.000 21.68 0.00 43.02 4.41
648 664 3.569250 TTAAACCCGCAAGAATTCTGC 57.431 42.857 9.17 13.31 43.02 4.26
649 665 5.163963 GCAAATTAAACCCGCAAGAATTCTG 60.164 40.000 9.17 4.72 43.02 3.02
650 666 4.929211 GCAAATTAAACCCGCAAGAATTCT 59.071 37.500 0.88 0.88 43.02 2.40
651 667 4.688413 TGCAAATTAAACCCGCAAGAATTC 59.312 37.500 0.00 0.00 43.02 2.17
652 668 4.636249 TGCAAATTAAACCCGCAAGAATT 58.364 34.783 0.00 0.00 43.02 2.17
653 669 4.264460 TGCAAATTAAACCCGCAAGAAT 57.736 36.364 0.00 0.00 43.02 2.40
654 670 3.735237 TGCAAATTAAACCCGCAAGAA 57.265 38.095 0.00 0.00 43.02 2.52
655 671 3.735237 TTGCAAATTAAACCCGCAAGA 57.265 38.095 0.00 0.00 37.64 3.02
656 672 5.145759 CAAATTGCAAATTAAACCCGCAAG 58.854 37.500 1.71 0.00 44.93 4.01
657 673 4.576463 ACAAATTGCAAATTAAACCCGCAA 59.424 33.333 1.71 0.00 45.70 4.85
658 674 4.130118 ACAAATTGCAAATTAAACCCGCA 58.870 34.783 1.71 0.00 0.00 5.69
659 675 4.740741 ACAAATTGCAAATTAAACCCGC 57.259 36.364 1.71 0.00 0.00 6.13
660 676 6.771188 TGTACAAATTGCAAATTAAACCCG 57.229 33.333 1.71 0.00 0.00 5.28
661 677 7.606073 AGGATGTACAAATTGCAAATTAAACCC 59.394 33.333 1.71 1.50 0.00 4.11
662 678 8.546597 AGGATGTACAAATTGCAAATTAAACC 57.453 30.769 1.71 0.69 0.00 3.27
664 680 9.213799 GGAAGGATGTACAAATTGCAAATTAAA 57.786 29.630 1.71 0.00 0.00 1.52
665 681 8.370940 TGGAAGGATGTACAAATTGCAAATTAA 58.629 29.630 1.71 0.00 0.00 1.40
666 682 7.901029 TGGAAGGATGTACAAATTGCAAATTA 58.099 30.769 1.71 0.00 0.00 1.40
667 683 6.767456 TGGAAGGATGTACAAATTGCAAATT 58.233 32.000 1.71 0.00 0.00 1.82
668 684 6.357579 TGGAAGGATGTACAAATTGCAAAT 57.642 33.333 1.71 0.00 0.00 2.32
669 685 5.798125 TGGAAGGATGTACAAATTGCAAA 57.202 34.783 1.71 0.00 0.00 3.68
670 686 5.716228 AGATGGAAGGATGTACAAATTGCAA 59.284 36.000 0.00 0.00 0.00 4.08
671 687 5.263599 AGATGGAAGGATGTACAAATTGCA 58.736 37.500 0.00 7.16 0.00 4.08
672 688 5.357878 TGAGATGGAAGGATGTACAAATTGC 59.642 40.000 0.00 1.14 0.00 3.56
673 689 6.375174 TGTGAGATGGAAGGATGTACAAATTG 59.625 38.462 0.00 0.00 0.00 2.32
674 690 6.484288 TGTGAGATGGAAGGATGTACAAATT 58.516 36.000 0.00 0.00 0.00 1.82
675 691 6.065976 TGTGAGATGGAAGGATGTACAAAT 57.934 37.500 0.00 0.00 0.00 2.32
676 692 5.491070 CTGTGAGATGGAAGGATGTACAAA 58.509 41.667 0.00 0.00 0.00 2.83
677 693 4.623886 GCTGTGAGATGGAAGGATGTACAA 60.624 45.833 0.00 0.00 0.00 2.41
678 694 3.118629 GCTGTGAGATGGAAGGATGTACA 60.119 47.826 0.00 0.00 0.00 2.90
679 695 3.118629 TGCTGTGAGATGGAAGGATGTAC 60.119 47.826 0.00 0.00 0.00 2.90
680 696 3.106827 TGCTGTGAGATGGAAGGATGTA 58.893 45.455 0.00 0.00 0.00 2.29
681 697 1.911357 TGCTGTGAGATGGAAGGATGT 59.089 47.619 0.00 0.00 0.00 3.06
682 698 2.286872 GTGCTGTGAGATGGAAGGATG 58.713 52.381 0.00 0.00 0.00 3.51
683 699 1.911357 TGTGCTGTGAGATGGAAGGAT 59.089 47.619 0.00 0.00 0.00 3.24
684 700 1.002430 GTGTGCTGTGAGATGGAAGGA 59.998 52.381 0.00 0.00 0.00 3.36
685 701 1.271001 TGTGTGCTGTGAGATGGAAGG 60.271 52.381 0.00 0.00 0.00 3.46
686 702 2.174363 TGTGTGCTGTGAGATGGAAG 57.826 50.000 0.00 0.00 0.00 3.46
687 703 2.865119 ATGTGTGCTGTGAGATGGAA 57.135 45.000 0.00 0.00 0.00 3.53
688 704 2.865119 AATGTGTGCTGTGAGATGGA 57.135 45.000 0.00 0.00 0.00 3.41
689 705 3.366679 GGAAAATGTGTGCTGTGAGATGG 60.367 47.826 0.00 0.00 0.00 3.51
690 706 3.253921 TGGAAAATGTGTGCTGTGAGATG 59.746 43.478 0.00 0.00 0.00 2.90
691 707 3.489355 TGGAAAATGTGTGCTGTGAGAT 58.511 40.909 0.00 0.00 0.00 2.75
692 708 2.929641 TGGAAAATGTGTGCTGTGAGA 58.070 42.857 0.00 0.00 0.00 3.27
693 709 3.366679 GGATGGAAAATGTGTGCTGTGAG 60.367 47.826 0.00 0.00 0.00 3.51
694 710 2.557924 GGATGGAAAATGTGTGCTGTGA 59.442 45.455 0.00 0.00 0.00 3.58
695 711 2.296752 TGGATGGAAAATGTGTGCTGTG 59.703 45.455 0.00 0.00 0.00 3.66
696 712 2.596346 TGGATGGAAAATGTGTGCTGT 58.404 42.857 0.00 0.00 0.00 4.40
697 713 3.319755 GTTGGATGGAAAATGTGTGCTG 58.680 45.455 0.00 0.00 0.00 4.41
698 714 2.030007 CGTTGGATGGAAAATGTGTGCT 60.030 45.455 0.00 0.00 0.00 4.40
699 715 2.327568 CGTTGGATGGAAAATGTGTGC 58.672 47.619 0.00 0.00 0.00 4.57
700 716 2.926159 GCCGTTGGATGGAAAATGTGTG 60.926 50.000 0.00 0.00 0.00 3.82
701 717 1.272212 GCCGTTGGATGGAAAATGTGT 59.728 47.619 0.00 0.00 0.00 3.72
702 718 1.271934 TGCCGTTGGATGGAAAATGTG 59.728 47.619 0.00 0.00 0.00 3.21
703 719 1.272212 GTGCCGTTGGATGGAAAATGT 59.728 47.619 0.00 0.00 0.00 2.71
704 720 1.271934 TGTGCCGTTGGATGGAAAATG 59.728 47.619 0.00 0.00 0.00 2.32
705 721 1.626686 TGTGCCGTTGGATGGAAAAT 58.373 45.000 0.00 0.00 0.00 1.82
706 722 1.339610 CTTGTGCCGTTGGATGGAAAA 59.660 47.619 0.00 0.00 0.00 2.29
707 723 0.958091 CTTGTGCCGTTGGATGGAAA 59.042 50.000 0.00 0.00 0.00 3.13
708 724 0.109532 TCTTGTGCCGTTGGATGGAA 59.890 50.000 0.00 0.00 0.00 3.53
709 725 0.605319 GTCTTGTGCCGTTGGATGGA 60.605 55.000 0.00 0.00 0.00 3.41
710 726 1.586154 GGTCTTGTGCCGTTGGATGG 61.586 60.000 0.00 0.00 0.00 3.51
711 727 0.888736 TGGTCTTGTGCCGTTGGATG 60.889 55.000 0.00 0.00 0.00 3.51
712 728 0.179004 TTGGTCTTGTGCCGTTGGAT 60.179 50.000 0.00 0.00 0.00 3.41
713 729 0.817634 CTTGGTCTTGTGCCGTTGGA 60.818 55.000 0.00 0.00 0.00 3.53
714 730 1.101049 ACTTGGTCTTGTGCCGTTGG 61.101 55.000 0.00 0.00 0.00 3.77
715 731 0.738389 AACTTGGTCTTGTGCCGTTG 59.262 50.000 0.00 0.00 0.00 4.10
716 732 1.470051 AAACTTGGTCTTGTGCCGTT 58.530 45.000 0.00 0.00 0.00 4.44
717 733 1.404035 GAAAACTTGGTCTTGTGCCGT 59.596 47.619 0.00 0.00 0.00 5.68
718 734 1.403679 TGAAAACTTGGTCTTGTGCCG 59.596 47.619 0.00 0.00 0.00 5.69
719 735 2.223805 CCTGAAAACTTGGTCTTGTGCC 60.224 50.000 0.00 0.00 0.00 5.01
720 736 2.427095 ACCTGAAAACTTGGTCTTGTGC 59.573 45.455 0.00 0.00 0.00 4.57
721 737 4.718940 AACCTGAAAACTTGGTCTTGTG 57.281 40.909 0.00 0.00 32.98 3.33
722 738 5.621329 CGAAAACCTGAAAACTTGGTCTTGT 60.621 40.000 0.00 0.00 32.98 3.16
723 739 4.798387 CGAAAACCTGAAAACTTGGTCTTG 59.202 41.667 0.00 0.00 32.98 3.02
724 740 4.676986 GCGAAAACCTGAAAACTTGGTCTT 60.677 41.667 0.00 0.00 32.98 3.01
725 741 3.181490 GCGAAAACCTGAAAACTTGGTCT 60.181 43.478 0.00 0.00 32.98 3.85
726 742 3.113322 GCGAAAACCTGAAAACTTGGTC 58.887 45.455 0.00 0.00 32.98 4.02
727 743 2.758423 AGCGAAAACCTGAAAACTTGGT 59.242 40.909 0.00 0.00 35.29 3.67
728 744 3.115554 CAGCGAAAACCTGAAAACTTGG 58.884 45.455 0.00 0.00 32.03 3.61
729 745 3.115554 CCAGCGAAAACCTGAAAACTTG 58.884 45.455 0.00 0.00 32.03 3.16
730 746 3.020984 TCCAGCGAAAACCTGAAAACTT 58.979 40.909 0.00 0.00 32.03 2.66
731 747 2.650322 TCCAGCGAAAACCTGAAAACT 58.350 42.857 0.00 0.00 32.03 2.66
732 748 3.243401 ACATCCAGCGAAAACCTGAAAAC 60.243 43.478 0.00 0.00 32.03 2.43
733 749 2.955660 ACATCCAGCGAAAACCTGAAAA 59.044 40.909 0.00 0.00 32.03 2.29
734 750 2.582052 ACATCCAGCGAAAACCTGAAA 58.418 42.857 0.00 0.00 32.03 2.69
735 751 2.270352 ACATCCAGCGAAAACCTGAA 57.730 45.000 0.00 0.00 32.03 3.02
736 752 2.695359 GTACATCCAGCGAAAACCTGA 58.305 47.619 0.00 0.00 32.03 3.86
737 753 1.393539 CGTACATCCAGCGAAAACCTG 59.606 52.381 0.00 0.00 0.00 4.00
738 754 1.674817 CCGTACATCCAGCGAAAACCT 60.675 52.381 0.00 0.00 0.00 3.50
739 755 0.725117 CCGTACATCCAGCGAAAACC 59.275 55.000 0.00 0.00 0.00 3.27
740 756 1.435577 ACCGTACATCCAGCGAAAAC 58.564 50.000 0.00 0.00 0.00 2.43
741 757 2.172851 AACCGTACATCCAGCGAAAA 57.827 45.000 0.00 0.00 0.00 2.29
742 758 2.070783 GAAACCGTACATCCAGCGAAA 58.929 47.619 0.00 0.00 0.00 3.46
743 759 1.673626 GGAAACCGTACATCCAGCGAA 60.674 52.381 0.00 0.00 33.30 4.70
744 760 0.108520 GGAAACCGTACATCCAGCGA 60.109 55.000 0.00 0.00 33.30 4.93
745 761 0.390603 TGGAAACCGTACATCCAGCG 60.391 55.000 3.34 0.00 38.30 5.18
746 762 1.084289 GTGGAAACCGTACATCCAGC 58.916 55.000 6.87 1.16 43.59 4.85
747 763 1.002659 TGGTGGAAACCGTACATCCAG 59.997 52.381 6.87 0.00 43.59 3.86
748 764 1.002659 CTGGTGGAAACCGTACATCCA 59.997 52.381 3.34 3.34 40.84 3.41
749 765 1.276989 TCTGGTGGAAACCGTACATCC 59.723 52.381 0.00 0.00 0.00 3.51
750 766 2.754946 TCTGGTGGAAACCGTACATC 57.245 50.000 0.00 0.00 0.00 3.06
751 767 2.304761 ACATCTGGTGGAAACCGTACAT 59.695 45.455 0.00 0.00 0.00 2.29
752 768 1.695242 ACATCTGGTGGAAACCGTACA 59.305 47.619 0.00 0.00 0.00 2.90
753 769 2.073816 CACATCTGGTGGAAACCGTAC 58.926 52.381 0.00 0.00 44.04 3.67
754 770 2.465860 CACATCTGGTGGAAACCGTA 57.534 50.000 0.00 0.00 44.04 4.02
755 771 3.322514 CACATCTGGTGGAAACCGT 57.677 52.632 0.00 0.00 44.04 4.83
764 780 0.109272 CGCACGAGTACACATCTGGT 60.109 55.000 0.00 0.00 0.00 4.00
765 781 0.802222 CCGCACGAGTACACATCTGG 60.802 60.000 0.00 0.00 0.00 3.86
766 782 0.109272 ACCGCACGAGTACACATCTG 60.109 55.000 0.00 0.00 0.00 2.90
767 783 0.109272 CACCGCACGAGTACACATCT 60.109 55.000 0.00 0.00 0.00 2.90
768 784 0.388134 ACACCGCACGAGTACACATC 60.388 55.000 0.00 0.00 0.00 3.06
769 785 0.666274 CACACCGCACGAGTACACAT 60.666 55.000 0.00 0.00 0.00 3.21
770 786 1.299544 CACACCGCACGAGTACACA 60.300 57.895 0.00 0.00 0.00 3.72
771 787 1.299620 ACACACCGCACGAGTACAC 60.300 57.895 0.00 0.00 0.00 2.90
772 788 1.299544 CACACACCGCACGAGTACA 60.300 57.895 0.00 0.00 0.00 2.90
773 789 2.654912 GCACACACCGCACGAGTAC 61.655 63.158 0.00 0.00 0.00 2.73
774 790 2.355363 GCACACACCGCACGAGTA 60.355 61.111 0.00 0.00 0.00 2.59
825 841 0.924363 CCGATGAACGACGCTCTACG 60.924 60.000 0.00 2.94 45.77 3.51
936 952 1.494824 CTTTGCTCTTTTGCTGGCAC 58.505 50.000 0.00 0.00 34.30 5.01
973 989 0.179084 TCTGGCTAATGGCTGTACGC 60.179 55.000 1.72 1.72 41.46 4.42
974 990 1.134818 TGTCTGGCTAATGGCTGTACG 60.135 52.381 0.00 0.00 41.46 3.67
975 991 2.280628 GTGTCTGGCTAATGGCTGTAC 58.719 52.381 0.00 0.00 41.46 2.90
976 992 1.209504 GGTGTCTGGCTAATGGCTGTA 59.790 52.381 0.00 0.00 41.46 2.74
977 993 0.035056 GGTGTCTGGCTAATGGCTGT 60.035 55.000 0.00 0.00 41.46 4.40
978 994 0.035152 TGGTGTCTGGCTAATGGCTG 60.035 55.000 0.00 0.00 41.46 4.85
979 995 0.035056 GTGGTGTCTGGCTAATGGCT 60.035 55.000 0.00 0.00 41.46 4.75
980 996 0.035056 AGTGGTGTCTGGCTAATGGC 60.035 55.000 0.00 0.00 40.90 4.40
1002 1018 1.152830 GGGGTGGAACTGGAAGCAA 59.847 57.895 0.00 0.00 37.60 3.91
1016 1032 3.823330 CTTCTACGAGCGCGGGGT 61.823 66.667 15.86 2.92 43.17 4.95
1018 1034 4.492160 TGCTTCTACGAGCGCGGG 62.492 66.667 15.86 6.78 45.64 6.13
1019 1035 3.248171 GTGCTTCTACGAGCGCGG 61.248 66.667 15.86 0.00 45.64 6.46
1025 1058 0.606604 GTTGGGAGGTGCTTCTACGA 59.393 55.000 0.00 0.00 0.00 3.43
1030 1063 2.747686 TCCGTTGGGAGGTGCTTC 59.252 61.111 0.00 0.00 37.43 3.86
1050 1083 2.969238 CTTAGCAGCGGCCATCGG 60.969 66.667 4.82 0.00 42.56 4.18
1838 1871 2.015587 CTTACGTAGCCCTTCTCTCGT 58.984 52.381 0.00 0.00 38.39 4.18
1860 1893 4.074970 CAGTGCAAAAAGGACAGAGGTAT 58.925 43.478 0.00 0.00 41.69 2.73
1911 1947 8.729805 AAGTGCAATTTTTGTCCATTCTAAAA 57.270 26.923 0.00 0.00 0.00 1.52
1912 1948 8.610896 CAAAGTGCAATTTTTGTCCATTCTAAA 58.389 29.630 9.83 0.00 31.36 1.85
1939 1975 1.297664 AGTGGAGTACTACGCTAGCG 58.702 55.000 34.27 34.27 38.04 4.26
1963 1999 2.288763 GCGATCATGGTGGTTGGTTTTT 60.289 45.455 0.00 0.00 0.00 1.94
1964 2000 1.272212 GCGATCATGGTGGTTGGTTTT 59.728 47.619 0.00 0.00 0.00 2.43
1969 2005 1.452110 TTCTGCGATCATGGTGGTTG 58.548 50.000 0.00 0.00 0.00 3.77
2035 2344 8.349245 TCAAATTACGTTTTCTGACATGACAAT 58.651 29.630 0.00 0.00 0.00 2.71
2050 2359 5.106157 CCAGCCAAGATCTTCAAATTACGTT 60.106 40.000 4.57 0.00 0.00 3.99
2139 2450 0.459063 GCAAGCCACATAAGCCAAGC 60.459 55.000 0.00 0.00 0.00 4.01
2200 2511 5.290386 AGTGAAGTTTTGAGTAGAAGACCG 58.710 41.667 0.00 0.00 0.00 4.79
2207 2518 6.090088 CGAGATTGGAGTGAAGTTTTGAGTAG 59.910 42.308 0.00 0.00 0.00 2.57
2211 2522 4.511454 CACGAGATTGGAGTGAAGTTTTGA 59.489 41.667 0.00 0.00 38.06 2.69
2212 2523 4.273480 ACACGAGATTGGAGTGAAGTTTTG 59.727 41.667 1.63 0.00 39.04 2.44
2216 2536 4.523173 TCTTACACGAGATTGGAGTGAAGT 59.477 41.667 1.63 0.00 39.04 3.01
2217 2537 5.060662 TCTTACACGAGATTGGAGTGAAG 57.939 43.478 1.63 2.35 39.04 3.02
2227 2547 5.907945 CGATCGTTACATTCTTACACGAGAT 59.092 40.000 7.03 0.00 42.69 2.75
2228 2548 5.063817 TCGATCGTTACATTCTTACACGAGA 59.936 40.000 15.94 0.00 42.69 4.04
2229 2549 5.169208 GTCGATCGTTACATTCTTACACGAG 59.831 44.000 15.94 0.00 42.69 4.18
2230 2550 5.023920 GTCGATCGTTACATTCTTACACGA 58.976 41.667 15.94 0.00 43.50 4.35
2231 2551 4.086926 CGTCGATCGTTACATTCTTACACG 60.087 45.833 15.94 8.77 34.52 4.49
2232 2552 5.023920 TCGTCGATCGTTACATTCTTACAC 58.976 41.667 15.94 0.00 40.80 2.90
2234 2554 4.142028 CGTCGTCGATCGTTACATTCTTAC 59.858 45.833 15.94 0.46 40.80 2.34
2235 2555 4.266157 CGTCGTCGATCGTTACATTCTTA 58.734 43.478 15.94 0.00 40.80 2.10
2236 2556 3.096461 CGTCGTCGATCGTTACATTCTT 58.904 45.455 15.94 0.00 40.80 2.52
2251 2572 1.154654 CGGCAAGAAAAGCGTCGTC 60.155 57.895 0.00 0.00 0.00 4.20
2276 2597 2.046892 CCACCACCTCCTTCTGCG 60.047 66.667 0.00 0.00 0.00 5.18
2286 2607 4.927782 TGCAGCACGTCCACCACC 62.928 66.667 0.00 0.00 0.00 4.61
2643 2964 0.456824 GCAGCTTCGAGATGTCGTCA 60.457 55.000 12.41 0.00 46.85 4.35
2769 3090 0.804989 CTGAATGGGAGACGCAAACC 59.195 55.000 0.00 0.00 0.00 3.27
2782 3104 4.152938 TGTCTTTGCGATCAACTCTGAATG 59.847 41.667 0.00 0.00 34.49 2.67
2796 3118 5.283717 GTGCAGTATTAACATTGTCTTTGCG 59.716 40.000 0.00 0.00 0.00 4.85
2805 3127 8.482943 TCACCTATACAGTGCAGTATTAACATT 58.517 33.333 4.15 0.00 36.23 2.71
2920 3252 9.609950 AAAATATATTTTGTGCACATGCAAAAC 57.390 25.926 22.39 0.00 46.92 2.43
3013 3345 3.054875 TGAATATCAGGAAGTGCAGTGCT 60.055 43.478 17.60 0.00 0.00 4.40
3097 3431 3.806316 AAAACGACAATTACGCTCCAG 57.194 42.857 0.00 0.00 0.00 3.86
3147 3640 8.240267 AGCTACAGGACCTTATTTCTTAGTAG 57.760 38.462 0.00 0.00 0.00 2.57
3150 3643 7.113658 TGAGCTACAGGACCTTATTTCTTAG 57.886 40.000 0.00 0.00 0.00 2.18
3390 3913 7.665690 ACATTGAGCGTCTAGAGAATATGAAT 58.334 34.615 0.00 0.00 0.00 2.57
3432 3955 8.193438 AGCAAAATTATGAGTAATTGGCTCTTC 58.807 33.333 11.44 0.00 42.22 2.87
3466 3989 5.489792 TTCTGGTTTGAGCAATCTAGTCT 57.510 39.130 5.09 0.00 0.00 3.24
3512 4035 7.667219 TCAAGCTCTTTCCTTGAATAGAACATT 59.333 33.333 1.68 0.00 43.98 2.71
3523 4046 8.137437 TGTTTTTATCTTCAAGCTCTTTCCTTG 58.863 33.333 0.00 0.00 40.72 3.61
3524 4047 8.237811 TGTTTTTATCTTCAAGCTCTTTCCTT 57.762 30.769 0.00 0.00 0.00 3.36
3526 4049 9.481340 AATTGTTTTTATCTTCAAGCTCTTTCC 57.519 29.630 0.00 0.00 0.00 3.13
3643 4170 1.134401 ACATCACCTAGCCGACCATTG 60.134 52.381 0.00 0.00 0.00 2.82
3751 7607 7.012138 ACAGCTTCATCTTCTAAATGCATACAG 59.988 37.037 0.00 0.00 0.00 2.74
3758 7616 6.592994 TGAGTGACAGCTTCATCTTCTAAATG 59.407 38.462 2.61 0.00 36.32 2.32
3817 7675 3.321968 GGATTCCATTGGGACCAAATAGC 59.678 47.826 8.00 0.00 44.89 2.97
3823 7681 2.855599 TGTATGGATTCCATTGGGACCA 59.144 45.455 22.87 14.95 42.23 4.02
3900 7758 2.093128 AGGATTTGGGGTTAGCTACGTG 60.093 50.000 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.