Multiple sequence alignment - TraesCS3A01G348800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G348800 chr3A 100.000 7192 0 0 1 7192 597328505 597335696 0.000000e+00 13282.0
1 TraesCS3A01G348800 chr3A 97.895 95 1 1 2732 2825 580636211 580636117 5.770000e-36 163.0
2 TraesCS3A01G348800 chr3A 96.907 97 2 1 2729 2824 705109789 705109885 2.080000e-35 161.0
3 TraesCS3A01G348800 chr3A 95.745 94 3 1 2732 2824 99305681 99305588 4.490000e-32 150.0
4 TraesCS3A01G348800 chr3D 94.275 2463 96 19 4751 7192 455054830 455057268 0.000000e+00 3725.0
5 TraesCS3A01G348800 chr3D 90.585 1317 64 14 623 1899 455051026 455052322 0.000000e+00 1690.0
6 TraesCS3A01G348800 chr3D 91.215 1218 35 16 3477 4658 455053650 455054831 0.000000e+00 1591.0
7 TraesCS3A01G348800 chr3D 95.319 769 33 2 1965 2732 455052347 455053113 0.000000e+00 1218.0
8 TraesCS3A01G348800 chr3D 96.223 503 13 1 2822 3324 455053098 455053594 0.000000e+00 819.0
9 TraesCS3A01G348800 chr3D 75.238 630 78 47 1 562 334638818 334639437 2.020000e-55 228.0
10 TraesCS3A01G348800 chr3D 86.555 119 13 2 95 212 48852996 48853112 2.110000e-25 128.0
11 TraesCS3A01G348800 chr3D 88.350 103 8 2 4656 4754 8363726 8363828 3.520000e-23 121.0
12 TraesCS3A01G348800 chr3D 88.776 98 11 0 1167 1264 455051606 455051703 3.520000e-23 121.0
13 TraesCS3A01G348800 chr3D 90.323 62 6 0 1239 1300 455051570 455051631 1.660000e-11 82.4
14 TraesCS3A01G348800 chr3D 96.774 31 1 0 3441 3471 508382590 508382620 1.300000e-02 52.8
15 TraesCS3A01G348800 chr3B 94.122 1310 57 10 5249 6548 598194911 598196210 0.000000e+00 1975.0
16 TraesCS3A01G348800 chr3B 88.828 1271 83 31 645 1883 598188380 598189623 0.000000e+00 1506.0
17 TraesCS3A01G348800 chr3B 96.579 643 21 1 2822 3464 598190406 598191047 0.000000e+00 1064.0
18 TraesCS3A01G348800 chr3B 92.946 723 25 3 3477 4197 598191104 598191802 0.000000e+00 1029.0
19 TraesCS3A01G348800 chr3B 89.176 813 61 13 1933 2732 598189623 598190421 0.000000e+00 989.0
20 TraesCS3A01G348800 chr3B 97.070 512 14 1 4751 5262 598192311 598192821 0.000000e+00 861.0
21 TraesCS3A01G348800 chr3B 89.160 655 38 11 6550 7192 598196282 598196915 0.000000e+00 785.0
22 TraesCS3A01G348800 chr3B 95.178 477 11 5 4195 4660 598191836 598192311 0.000000e+00 743.0
23 TraesCS3A01G348800 chr3B 80.347 519 68 16 92 581 704571444 704571957 5.300000e-96 363.0
24 TraesCS3A01G348800 chr3B 97.500 40 1 0 3439 3478 181496192 181496231 1.290000e-07 69.4
25 TraesCS3A01G348800 chr1A 80.271 517 68 23 72 579 440032309 440032800 6.860000e-95 359.0
26 TraesCS3A01G348800 chr1A 87.234 282 32 4 2945 3224 492126553 492126274 1.160000e-82 318.0
27 TraesCS3A01G348800 chr1A 87.770 139 17 0 4407 4545 492125639 492125501 5.770000e-36 163.0
28 TraesCS3A01G348800 chr1A 80.465 215 34 6 1602 1812 492127881 492127671 2.690000e-34 158.0
29 TraesCS3A01G348800 chr1A 96.774 93 2 1 2732 2823 65829706 65829798 3.470000e-33 154.0
30 TraesCS3A01G348800 chr1A 94.643 56 2 1 2770 2825 30781830 30781884 1.290000e-12 86.1
31 TraesCS3A01G348800 chr1A 97.143 35 1 0 3444 3478 56623268 56623302 7.790000e-05 60.2
32 TraesCS3A01G348800 chr1B 79.769 519 69 18 95 579 540477890 540478406 1.920000e-90 344.0
33 TraesCS3A01G348800 chr1B 76.457 446 66 20 96 508 607313326 607313765 9.460000e-49 206.0
34 TraesCS3A01G348800 chr1B 75.561 446 63 22 96 508 607128653 607129085 2.060000e-40 178.0
35 TraesCS3A01G348800 chr1B 88.889 144 15 1 4407 4550 529393987 529393845 7.420000e-40 176.0
36 TraesCS3A01G348800 chr1B 81.481 216 32 6 1602 1813 529396255 529396044 3.450000e-38 171.0
37 TraesCS3A01G348800 chr1B 89.286 56 5 1 2770 2825 49864574 49864628 1.290000e-07 69.4
38 TraesCS3A01G348800 chr2A 78.065 620 82 23 5 573 13248702 13248086 6.910000e-90 342.0
39 TraesCS3A01G348800 chr2A 95.918 98 3 1 2732 2828 710377186 710377089 2.690000e-34 158.0
40 TraesCS3A01G348800 chr2A 88.679 106 7 1 4652 4752 29739259 29739364 2.720000e-24 124.0
41 TraesCS3A01G348800 chr2A 97.561 41 0 1 3439 3478 55567880 55567920 1.290000e-07 69.4
42 TraesCS3A01G348800 chr2D 79.383 519 61 26 93 573 632461992 632462502 2.500000e-84 324.0
43 TraesCS3A01G348800 chr2D 88.235 102 8 2 4655 4752 3734539 3734640 1.270000e-22 119.0
44 TraesCS3A01G348800 chr2D 88.235 102 8 2 4655 4752 3740950 3741051 1.270000e-22 119.0
45 TraesCS3A01G348800 chr2D 95.122 41 2 0 3444 3484 556926513 556926473 1.670000e-06 65.8
46 TraesCS3A01G348800 chr1D 87.589 282 31 4 2945 3224 393734666 393734945 2.500000e-84 324.0
47 TraesCS3A01G348800 chr1D 77.926 376 47 19 21 367 291804450 291804818 1.220000e-47 202.0
48 TraesCS3A01G348800 chr1D 80.930 215 33 6 1602 1812 393733332 393733542 5.770000e-36 163.0
49 TraesCS3A01G348800 chr1D 100.000 35 0 0 3444 3478 57502410 57502444 1.670000e-06 65.8
50 TraesCS3A01G348800 chr7A 80.902 377 59 12 212 579 234853329 234852957 1.180000e-72 285.0
51 TraesCS3A01G348800 chr7A 95.789 95 3 1 2732 2825 641709349 641709443 1.250000e-32 152.0
52 TraesCS3A01G348800 chr7A 93.878 98 5 1 2732 2828 129061236 129061139 5.810000e-31 147.0
53 TraesCS3A01G348800 chr7A 93.023 43 3 0 3436 3478 731273507 731273549 6.020000e-06 63.9
54 TraesCS3A01G348800 chr7A 94.872 39 1 1 3440 3478 93491633 93491596 7.790000e-05 60.2
55 TraesCS3A01G348800 chr7A 97.143 35 1 0 3444 3478 686114981 686114947 7.790000e-05 60.2
56 TraesCS3A01G348800 chrUn 77.863 524 68 28 93 573 42436535 42436017 1.530000e-71 281.0
57 TraesCS3A01G348800 chrUn 77.905 525 67 27 93 573 42534628 42534109 1.530000e-71 281.0
58 TraesCS3A01G348800 chr5D 76.529 605 78 30 9 557 88186321 88186917 9.190000e-69 272.0
59 TraesCS3A01G348800 chr5D 94.681 94 5 0 2731 2824 268935292 268935385 5.810000e-31 147.0
60 TraesCS3A01G348800 chr5D 100.000 35 0 0 3444 3478 52247590 52247624 1.670000e-06 65.8
61 TraesCS3A01G348800 chr5A 80.376 372 56 17 211 573 523563676 523564039 4.280000e-67 267.0
62 TraesCS3A01G348800 chr5A 97.895 95 1 1 2732 2825 527627000 527626906 5.770000e-36 163.0
63 TraesCS3A01G348800 chr5A 96.703 91 2 1 2735 2824 663785934 663786024 4.490000e-32 150.0
64 TraesCS3A01G348800 chr5A 89.320 103 7 2 4654 4752 491734847 491734949 7.570000e-25 126.0
65 TraesCS3A01G348800 chr4A 97.872 94 1 1 2732 2824 214995754 214995847 2.080000e-35 161.0
66 TraesCS3A01G348800 chr4A 95.789 95 3 1 2732 2825 319838563 319838469 1.250000e-32 152.0
67 TraesCS3A01G348800 chr4A 97.727 44 1 0 2781 2824 530178149 530178192 7.740000e-10 76.8
68 TraesCS3A01G348800 chr6A 88.618 123 11 2 93 214 35257955 35257835 5.810000e-31 147.0
69 TraesCS3A01G348800 chr6A 79.717 212 33 10 2 209 536577975 536577770 2.090000e-30 145.0
70 TraesCS3A01G348800 chr6A 96.970 66 1 1 2759 2823 534672670 534672735 7.630000e-20 110.0
71 TraesCS3A01G348800 chr5B 92.632 95 5 2 2731 2824 344557295 344557388 1.260000e-27 135.0
72 TraesCS3A01G348800 chr5B 98.148 54 1 0 2771 2824 548382398 548382345 2.140000e-15 95.3
73 TraesCS3A01G348800 chr4B 90.722 97 8 1 4656 4752 465476765 465476860 2.110000e-25 128.0
74 TraesCS3A01G348800 chr7D 90.625 96 7 1 4657 4752 235187239 235187146 7.570000e-25 126.0
75 TraesCS3A01G348800 chr4D 90.909 99 2 4 4660 4757 609531 609623 7.570000e-25 126.0
76 TraesCS3A01G348800 chr6D 89.216 102 7 2 4657 4754 412044535 412044636 2.720000e-24 124.0
77 TraesCS3A01G348800 chr6B 85.246 122 15 3 93 212 153401958 153401838 9.800000e-24 122.0
78 TraesCS3A01G348800 chr6B 96.552 58 2 0 2772 2829 544396207 544396150 5.940000e-16 97.1
79 TraesCS3A01G348800 chr6B 84.043 94 12 3 2731 2823 695922593 695922684 3.570000e-13 87.9
80 TraesCS3A01G348800 chr6B 95.000 40 1 1 3440 3478 493313960 493313921 2.170000e-05 62.1
81 TraesCS3A01G348800 chr7B 100.000 35 0 0 3444 3478 746315401 746315367 1.670000e-06 65.8
82 TraesCS3A01G348800 chr2B 97.143 35 1 0 3444 3478 773875119 773875085 7.790000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G348800 chr3A 597328505 597335696 7191 False 13282.000000 13282 100.000000 1 7192 1 chr3A.!!$F1 7191
1 TraesCS3A01G348800 chr3D 455051026 455057268 6242 False 1320.914286 3725 92.388000 623 7192 7 chr3D.!!$F5 6569
2 TraesCS3A01G348800 chr3D 334638818 334639437 619 False 228.000000 228 75.238000 1 562 1 chr3D.!!$F3 561
3 TraesCS3A01G348800 chr3B 598188380 598196915 8535 False 1119.000000 1975 92.882375 645 7192 8 chr3B.!!$F3 6547
4 TraesCS3A01G348800 chr3B 704571444 704571957 513 False 363.000000 363 80.347000 92 581 1 chr3B.!!$F2 489
5 TraesCS3A01G348800 chr1A 492125501 492127881 2380 True 213.000000 318 85.156333 1602 4545 3 chr1A.!!$R1 2943
6 TraesCS3A01G348800 chr1B 540477890 540478406 516 False 344.000000 344 79.769000 95 579 1 chr1B.!!$F2 484
7 TraesCS3A01G348800 chr2A 13248086 13248702 616 True 342.000000 342 78.065000 5 573 1 chr2A.!!$R1 568
8 TraesCS3A01G348800 chr2D 632461992 632462502 510 False 324.000000 324 79.383000 93 573 1 chr2D.!!$F3 480
9 TraesCS3A01G348800 chr1D 393733332 393734945 1613 False 243.500000 324 84.259500 1602 3224 2 chr1D.!!$F3 1622
10 TraesCS3A01G348800 chrUn 42436017 42436535 518 True 281.000000 281 77.863000 93 573 1 chrUn.!!$R1 480
11 TraesCS3A01G348800 chrUn 42534109 42534628 519 True 281.000000 281 77.905000 93 573 1 chrUn.!!$R2 480
12 TraesCS3A01G348800 chr5D 88186321 88186917 596 False 272.000000 272 76.529000 9 557 1 chr5D.!!$F2 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 742 0.184211 ACACACGGGCCCTTTTTACT 59.816 50.000 22.43 0.0 0.00 2.24 F
1829 2015 0.028770 CGGTTTCGCAGCTTGTTTGA 59.971 50.000 0.00 0.0 0.00 2.69 F
1950 2144 0.166814 GGTTTGCTAGTGCTTGCTCG 59.833 55.000 7.11 0.0 40.48 5.03 F
2091 2289 1.608055 TGCACATCCTCCAAACACAG 58.392 50.000 0.00 0.0 0.00 3.66 F
2820 3269 0.892063 GGTTATGCCCGGCTCAAAAA 59.108 50.000 11.61 0.0 0.00 1.94 F
3692 4722 0.532640 CTTTTGCCCGCCTTGCTTTT 60.533 50.000 0.00 0.0 0.00 2.27 F
4964 6159 2.292267 CAGTTGTCTCTTGTTGCCTGT 58.708 47.619 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 2221 0.593128 GCACTAGCAAACCACACAGG 59.407 55.0 0.00 0.00 41.82 4.00 R
2660 3109 0.103572 ACTTACGGTGTGCAGTCGTT 59.896 50.0 12.90 0.00 38.19 3.85 R
2801 3250 0.892063 TTTTTGAGCCGGGCATAACC 59.108 50.0 23.09 5.18 37.93 2.85 R
3390 4374 1.093972 TACACAGGAATTGCATGGCG 58.906 50.0 0.00 0.00 31.20 5.69 R
4735 5930 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.0 0.00 0.00 0.00 4.00 R
5262 6457 0.249657 CGGGATCTAGCAGAAGCACC 60.250 60.0 0.00 0.00 45.49 5.01 R
6872 10255 0.037975 CAAAACCCATGTGGCAGAGC 60.038 55.0 0.00 0.00 37.83 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 68 7.770201 ACAATTTGGGAATTCAAAAAGGTTTG 58.230 30.769 7.93 10.33 44.71 2.93
67 69 6.957920 ATTTGGGAATTCAAAAAGGTTTGG 57.042 33.333 7.93 0.00 43.70 3.28
358 458 9.982291 CCTAAAAATGATCATGCATTTCAAAAG 57.018 29.630 9.46 5.89 45.09 2.27
405 508 4.133078 TCCACCAATTTCCAAAACAATGC 58.867 39.130 0.00 0.00 0.00 3.56
598 727 3.577649 TTTTTCTTCCGTTGCAACACA 57.422 38.095 28.01 11.65 0.00 3.72
599 728 2.553079 TTTCTTCCGTTGCAACACAC 57.447 45.000 28.01 3.05 0.00 3.82
600 729 0.375454 TTCTTCCGTTGCAACACACG 59.625 50.000 28.01 15.55 0.00 4.49
601 730 1.010125 CTTCCGTTGCAACACACGG 60.010 57.895 28.01 23.60 41.45 4.94
602 731 2.387125 CTTCCGTTGCAACACACGGG 62.387 60.000 28.01 19.95 40.87 5.28
603 732 4.622456 CCGTTGCAACACACGGGC 62.622 66.667 28.01 0.00 38.50 6.13
604 733 4.622456 CGTTGCAACACACGGGCC 62.622 66.667 28.01 0.00 0.00 5.80
605 734 4.279043 GTTGCAACACACGGGCCC 62.279 66.667 24.52 13.57 0.00 5.80
606 735 4.514585 TTGCAACACACGGGCCCT 62.515 61.111 22.43 3.67 0.00 5.19
607 736 4.514585 TGCAACACACGGGCCCTT 62.515 61.111 22.43 7.92 0.00 3.95
608 737 3.223589 GCAACACACGGGCCCTTT 61.224 61.111 22.43 2.91 0.00 3.11
609 738 2.791868 GCAACACACGGGCCCTTTT 61.792 57.895 22.43 0.00 0.00 2.27
610 739 1.819905 CAACACACGGGCCCTTTTT 59.180 52.632 22.43 2.45 0.00 1.94
611 740 1.033574 CAACACACGGGCCCTTTTTA 58.966 50.000 22.43 0.00 0.00 1.52
612 741 1.034356 AACACACGGGCCCTTTTTAC 58.966 50.000 22.43 0.00 0.00 2.01
613 742 0.184211 ACACACGGGCCCTTTTTACT 59.816 50.000 22.43 0.00 0.00 2.24
614 743 1.420891 ACACACGGGCCCTTTTTACTA 59.579 47.619 22.43 0.00 0.00 1.82
615 744 2.081462 CACACGGGCCCTTTTTACTAG 58.919 52.381 22.43 2.61 0.00 2.57
616 745 1.701292 ACACGGGCCCTTTTTACTAGT 59.299 47.619 22.43 3.37 0.00 2.57
617 746 2.905736 ACACGGGCCCTTTTTACTAGTA 59.094 45.455 22.43 0.00 0.00 1.82
618 747 3.327464 ACACGGGCCCTTTTTACTAGTAA 59.673 43.478 22.43 11.38 0.00 2.24
619 748 3.937079 CACGGGCCCTTTTTACTAGTAAG 59.063 47.826 22.43 6.21 0.00 2.34
620 749 3.584406 ACGGGCCCTTTTTACTAGTAAGT 59.416 43.478 22.43 1.14 39.91 2.24
621 750 4.777366 ACGGGCCCTTTTTACTAGTAAGTA 59.223 41.667 22.43 5.59 37.15 2.24
622 751 5.248248 ACGGGCCCTTTTTACTAGTAAGTAA 59.752 40.000 22.43 12.09 44.61 2.24
623 752 6.070021 ACGGGCCCTTTTTACTAGTAAGTAAT 60.070 38.462 22.43 0.00 45.37 1.89
624 753 7.125659 ACGGGCCCTTTTTACTAGTAAGTAATA 59.874 37.037 22.43 0.00 45.37 0.98
625 754 7.986889 CGGGCCCTTTTTACTAGTAAGTAATAA 59.013 37.037 22.43 4.29 45.37 1.40
626 755 9.334947 GGGCCCTTTTTACTAGTAAGTAATAAG 57.665 37.037 17.04 15.63 46.26 1.73
627 756 9.896645 GGCCCTTTTTACTAGTAAGTAATAAGT 57.103 33.333 14.73 0.00 45.80 2.24
669 798 8.230486 GGTAAACTGACTCATGTGTGAATTAAG 58.770 37.037 4.90 0.00 33.05 1.85
675 804 9.903682 CTGACTCATGTGTGAATTAAGAAAAAT 57.096 29.630 4.90 0.00 33.05 1.82
677 806 9.132521 GACTCATGTGTGAATTAAGAAAAATGG 57.867 33.333 4.90 0.00 33.05 3.16
695 827 0.391228 GGAATCCCGGAGAAGCTCTC 59.609 60.000 0.73 0.00 42.66 3.20
696 828 1.408969 GAATCCCGGAGAAGCTCTCT 58.591 55.000 0.73 5.82 42.95 3.10
716 848 3.706373 TTCCTGCTCGGTCCTGCC 61.706 66.667 1.98 0.00 0.00 4.85
754 886 0.531753 ACCAAAAATTGCCCACACGC 60.532 50.000 0.00 0.00 0.00 5.34
772 905 1.501169 GCCGGCATGCAAAAATATCC 58.499 50.000 24.80 0.00 0.00 2.59
954 1096 4.785453 CTGCCCCTTCCCGCTCAC 62.785 72.222 0.00 0.00 0.00 3.51
1154 1305 1.687493 CCCGCTTCTCCTCCTCCTT 60.687 63.158 0.00 0.00 0.00 3.36
1161 1312 0.548989 TCTCCTCCTCCTTCTCCTCG 59.451 60.000 0.00 0.00 0.00 4.63
1162 1313 1.076632 TCCTCCTCCTTCTCCTCGC 60.077 63.158 0.00 0.00 0.00 5.03
1198 1358 4.232061 CCCAAACCCCACTGCCCA 62.232 66.667 0.00 0.00 0.00 5.36
1251 1411 2.757917 GTCTCCTCTCCAGCGCCT 60.758 66.667 2.29 0.00 0.00 5.52
1282 1442 0.692419 ATTGCCCGTCTCCTCTCCAT 60.692 55.000 0.00 0.00 0.00 3.41
1331 1491 1.443702 CCGACGCATCTTCACACGA 60.444 57.895 0.00 0.00 0.00 4.35
1379 1539 3.974757 CGCCGATCTACCCCGACC 61.975 72.222 0.00 0.00 0.00 4.79
1403 1563 4.334118 TGCCGCCACTGCAGATGT 62.334 61.111 23.35 0.00 37.32 3.06
1495 1655 1.067846 TCGACACAAAGGAGATCACCG 60.068 52.381 3.31 0.00 34.73 4.94
1577 1761 3.799755 GTCGTGGGGATTGTGCGC 61.800 66.667 0.00 0.00 0.00 6.09
1801 1987 3.399330 CCTGCTTGTCTTCTTCGGTAAA 58.601 45.455 0.00 0.00 0.00 2.01
1829 2015 0.028770 CGGTTTCGCAGCTTGTTTGA 59.971 50.000 0.00 0.00 0.00 2.69
1871 2065 6.346896 AGTAGTACTTTAACATGGCTAAGGC 58.653 40.000 0.00 0.00 37.82 4.35
1898 2092 9.212641 GTGCTCTCATGCTCTGATTAATTAATA 57.787 33.333 10.68 0.00 32.10 0.98
1902 2096 9.631452 TCTCATGCTCTGATTAATTAATACTCG 57.369 33.333 10.68 2.50 32.10 4.18
1906 2100 9.929180 ATGCTCTGATTAATTAATACTCGCTTA 57.071 29.630 10.68 0.00 0.00 3.09
1907 2101 9.929180 TGCTCTGATTAATTAATACTCGCTTAT 57.071 29.630 10.68 0.00 0.00 1.73
1948 2142 0.954452 GTGGTTTGCTAGTGCTTGCT 59.046 50.000 7.11 0.00 40.48 3.91
1950 2144 0.166814 GGTTTGCTAGTGCTTGCTCG 59.833 55.000 7.11 0.00 40.48 5.03
2014 2212 5.164954 GTGATCTTATGTCCGATTAGAGGC 58.835 45.833 0.00 0.00 0.00 4.70
2023 2221 2.094182 TCCGATTAGAGGCAGTGTTGTC 60.094 50.000 0.00 0.00 0.00 3.18
2091 2289 1.608055 TGCACATCCTCCAAACACAG 58.392 50.000 0.00 0.00 0.00 3.66
2097 2295 3.904339 ACATCCTCCAAACACAGTAGAGT 59.096 43.478 0.00 0.00 0.00 3.24
2134 2332 9.573133 GATTGTACCCTTTATTGTCAAATCTTG 57.427 33.333 0.00 0.00 0.00 3.02
2338 2550 5.490139 TTGCAATAAGCTAGAGCATGTTC 57.510 39.130 0.50 0.50 45.94 3.18
2378 2590 7.564793 TGACTTGTAACCTTGTCATAGCATAT 58.435 34.615 0.00 0.00 34.94 1.78
2486 2932 9.588096 AGGAAGTCTGGTAATTATTTTGTCTTT 57.412 29.630 0.00 0.00 0.00 2.52
2569 3017 8.909923 ACAGGTATATTATTTTGTGCCCTTTAC 58.090 33.333 0.00 0.00 0.00 2.01
2580 3028 3.181480 TGTGCCCTTTACTTGCTTTTGAC 60.181 43.478 0.00 0.00 0.00 3.18
2605 3053 4.527427 TCATGAATTTCCATTGGAGTTGCA 59.473 37.500 5.36 3.01 31.21 4.08
2732 3181 6.699366 TCAACATCAAATACATGGTGCATTT 58.301 32.000 0.00 0.00 38.62 2.32
2733 3182 6.812656 TCAACATCAAATACATGGTGCATTTC 59.187 34.615 0.00 0.00 38.62 2.17
2734 3183 5.663456 ACATCAAATACATGGTGCATTTCC 58.337 37.500 0.00 0.00 34.70 3.13
2735 3184 4.734398 TCAAATACATGGTGCATTTCCC 57.266 40.909 0.00 0.00 0.00 3.97
2736 3185 3.450457 TCAAATACATGGTGCATTTCCCC 59.550 43.478 0.00 0.00 0.00 4.81
2737 3186 3.403228 AATACATGGTGCATTTCCCCT 57.597 42.857 0.00 0.00 0.00 4.79
2738 3187 2.917713 TACATGGTGCATTTCCCCTT 57.082 45.000 0.00 0.00 0.00 3.95
2739 3188 2.028561 ACATGGTGCATTTCCCCTTT 57.971 45.000 0.00 0.00 0.00 3.11
2740 3189 1.901833 ACATGGTGCATTTCCCCTTTC 59.098 47.619 0.00 0.00 0.00 2.62
2741 3190 2.181975 CATGGTGCATTTCCCCTTTCT 58.818 47.619 0.00 0.00 0.00 2.52
2742 3191 3.245586 ACATGGTGCATTTCCCCTTTCTA 60.246 43.478 0.00 0.00 0.00 2.10
2743 3192 3.085952 TGGTGCATTTCCCCTTTCTAG 57.914 47.619 0.00 0.00 0.00 2.43
2744 3193 2.291540 TGGTGCATTTCCCCTTTCTAGG 60.292 50.000 0.00 0.00 41.60 3.02
2745 3194 2.291605 GGTGCATTTCCCCTTTCTAGGT 60.292 50.000 0.00 0.00 40.19 3.08
2746 3195 3.017442 GTGCATTTCCCCTTTCTAGGTC 58.983 50.000 0.00 0.00 40.19 3.85
2747 3196 2.919602 TGCATTTCCCCTTTCTAGGTCT 59.080 45.455 0.00 0.00 40.19 3.85
2748 3197 3.054361 TGCATTTCCCCTTTCTAGGTCTC 60.054 47.826 0.00 0.00 40.19 3.36
2749 3198 3.685835 GCATTTCCCCTTTCTAGGTCTCC 60.686 52.174 0.00 0.00 40.19 3.71
2750 3199 3.579742 TTTCCCCTTTCTAGGTCTCCT 57.420 47.619 0.00 0.00 40.19 3.69
2751 3200 3.579742 TTCCCCTTTCTAGGTCTCCTT 57.420 47.619 0.00 0.00 40.19 3.36
2752 3201 3.579742 TCCCCTTTCTAGGTCTCCTTT 57.420 47.619 0.00 0.00 40.19 3.11
2753 3202 3.883135 TCCCCTTTCTAGGTCTCCTTTT 58.117 45.455 0.00 0.00 40.19 2.27
2754 3203 3.587506 TCCCCTTTCTAGGTCTCCTTTTG 59.412 47.826 0.00 0.00 40.19 2.44
2755 3204 3.587506 CCCCTTTCTAGGTCTCCTTTTGA 59.412 47.826 0.00 0.00 40.19 2.69
2756 3205 4.042934 CCCCTTTCTAGGTCTCCTTTTGAA 59.957 45.833 0.00 0.00 40.19 2.69
2757 3206 5.004448 CCCTTTCTAGGTCTCCTTTTGAAC 58.996 45.833 0.00 0.00 40.19 3.18
2758 3207 5.221945 CCCTTTCTAGGTCTCCTTTTGAACT 60.222 44.000 0.00 0.00 40.19 3.01
2759 3208 5.935206 CCTTTCTAGGTCTCCTTTTGAACTC 59.065 44.000 0.00 0.00 36.74 3.01
2760 3209 6.239743 CCTTTCTAGGTCTCCTTTTGAACTCT 60.240 42.308 0.00 0.00 36.74 3.24
2761 3210 6.749036 TTCTAGGTCTCCTTTTGAACTCTT 57.251 37.500 0.00 0.00 34.61 2.85
2762 3211 7.850935 TTCTAGGTCTCCTTTTGAACTCTTA 57.149 36.000 0.00 0.00 34.61 2.10
2763 3212 7.850935 TCTAGGTCTCCTTTTGAACTCTTAA 57.149 36.000 0.00 0.00 34.61 1.85
2764 3213 7.897864 TCTAGGTCTCCTTTTGAACTCTTAAG 58.102 38.462 0.00 0.00 34.61 1.85
2765 3214 6.749036 AGGTCTCCTTTTGAACTCTTAAGA 57.251 37.500 4.81 4.81 0.00 2.10
2766 3215 6.526526 AGGTCTCCTTTTGAACTCTTAAGAC 58.473 40.000 0.00 0.00 0.00 3.01
2767 3216 6.327887 AGGTCTCCTTTTGAACTCTTAAGACT 59.672 38.462 0.00 0.00 33.03 3.24
2768 3217 7.509659 AGGTCTCCTTTTGAACTCTTAAGACTA 59.490 37.037 0.00 0.00 33.03 2.59
2769 3218 8.315482 GGTCTCCTTTTGAACTCTTAAGACTAT 58.685 37.037 0.00 0.00 33.03 2.12
2770 3219 9.713713 GTCTCCTTTTGAACTCTTAAGACTATT 57.286 33.333 0.00 0.00 0.00 1.73
2773 3222 9.847224 TCCTTTTGAACTCTTAAGACTATTTGT 57.153 29.630 0.00 0.00 0.00 2.83
2781 3230 9.939802 AACTCTTAAGACTATTTGTATTTCCGT 57.060 29.630 0.00 0.00 31.90 4.69
2782 3231 9.939802 ACTCTTAAGACTATTTGTATTTCCGTT 57.060 29.630 0.00 0.00 31.90 4.44
2787 3236 8.500753 AAGACTATTTGTATTTCCGTTATGCA 57.499 30.769 0.00 0.00 0.00 3.96
2788 3237 8.500753 AGACTATTTGTATTTCCGTTATGCAA 57.499 30.769 0.00 0.00 0.00 4.08
2789 3238 8.612619 AGACTATTTGTATTTCCGTTATGCAAG 58.387 33.333 0.00 0.00 0.00 4.01
2790 3239 8.276252 ACTATTTGTATTTCCGTTATGCAAGT 57.724 30.769 0.00 0.00 0.00 3.16
2791 3240 9.386010 ACTATTTGTATTTCCGTTATGCAAGTA 57.614 29.630 0.00 0.00 0.00 2.24
2794 3243 8.903570 TTTGTATTTCCGTTATGCAAGTAATG 57.096 30.769 0.00 0.00 0.00 1.90
2795 3244 7.022055 TGTATTTCCGTTATGCAAGTAATGG 57.978 36.000 10.84 10.84 40.54 3.16
2796 3245 6.824196 TGTATTTCCGTTATGCAAGTAATGGA 59.176 34.615 14.46 14.46 44.20 3.41
2799 3248 5.811399 TCCGTTATGCAAGTAATGGAAAG 57.189 39.130 15.63 0.00 43.39 2.62
2800 3249 4.638421 TCCGTTATGCAAGTAATGGAAAGG 59.362 41.667 15.63 2.52 43.39 3.11
2801 3250 4.202010 CCGTTATGCAAGTAATGGAAAGGG 60.202 45.833 11.45 0.00 41.32 3.95
2802 3251 4.202010 CGTTATGCAAGTAATGGAAAGGGG 60.202 45.833 0.00 0.00 30.96 4.79
2803 3252 2.990740 TGCAAGTAATGGAAAGGGGT 57.009 45.000 0.00 0.00 0.00 4.95
2804 3253 3.252554 TGCAAGTAATGGAAAGGGGTT 57.747 42.857 0.00 0.00 0.00 4.11
2805 3254 4.390129 TGCAAGTAATGGAAAGGGGTTA 57.610 40.909 0.00 0.00 0.00 2.85
2806 3255 4.941713 TGCAAGTAATGGAAAGGGGTTAT 58.058 39.130 0.00 0.00 0.00 1.89
2807 3256 4.709397 TGCAAGTAATGGAAAGGGGTTATG 59.291 41.667 0.00 0.00 0.00 1.90
2808 3257 4.441495 GCAAGTAATGGAAAGGGGTTATGC 60.441 45.833 0.00 0.00 0.00 3.14
2809 3258 3.910989 AGTAATGGAAAGGGGTTATGCC 58.089 45.455 0.00 0.00 0.00 4.40
2818 3267 4.329831 GGTTATGCCCGGCTCAAA 57.670 55.556 11.61 0.00 0.00 2.69
2819 3268 2.573920 GGTTATGCCCGGCTCAAAA 58.426 52.632 11.61 0.00 0.00 2.44
2820 3269 0.892063 GGTTATGCCCGGCTCAAAAA 59.108 50.000 11.61 0.00 0.00 1.94
2860 3309 5.070446 TCCTATGATTATCGGTGCAAGTTCT 59.930 40.000 0.00 0.00 0.00 3.01
3099 4083 4.604843 TGAAGCTCAGATACAATTTGCG 57.395 40.909 0.00 0.00 0.00 4.85
3123 4107 3.119193 CGGGGAATTCCGGCATTG 58.881 61.111 18.30 0.62 45.78 2.82
3201 4185 2.238521 CATTGTGCAAGGTGTAGGGTT 58.761 47.619 0.00 0.00 0.00 4.11
3287 4271 8.458843 TGCTACTATTTATTTTCAAGGTTCAGC 58.541 33.333 0.00 0.00 0.00 4.26
3353 4337 6.292596 CCCATGTTTTGGTTTTGTGTAATTCG 60.293 38.462 0.00 0.00 44.83 3.34
3392 4376 7.693951 GGATATAAAACATGTGAGAATATGCGC 59.306 37.037 0.00 0.00 0.00 6.09
3414 4398 4.937015 GCCATGCAATTCCTGTGTAAAAAT 59.063 37.500 0.00 0.00 0.00 1.82
3417 4401 7.254522 GCCATGCAATTCCTGTGTAAAAATATG 60.255 37.037 0.00 0.00 0.00 1.78
3420 4404 9.754382 ATGCAATTCCTGTGTAAAAATATGATC 57.246 29.630 0.00 0.00 0.00 2.92
3469 4453 8.485578 ACTCCCTCTGTAAAGGAATATAAGAG 57.514 38.462 0.00 0.00 38.87 2.85
3471 4455 6.015350 TCCCTCTGTAAAGGAATATAAGAGCG 60.015 42.308 0.00 0.00 38.87 5.03
3472 4456 6.239345 CCCTCTGTAAAGGAATATAAGAGCGT 60.239 42.308 0.00 0.00 38.87 5.07
3473 4457 7.210873 CCTCTGTAAAGGAATATAAGAGCGTT 58.789 38.462 0.00 0.00 38.87 4.84
3474 4458 7.711339 CCTCTGTAAAGGAATATAAGAGCGTTT 59.289 37.037 0.00 0.00 38.87 3.60
3476 4460 9.745880 TCTGTAAAGGAATATAAGAGCGTTTAG 57.254 33.333 0.00 0.00 0.00 1.85
3477 4461 9.745880 CTGTAAAGGAATATAAGAGCGTTTAGA 57.254 33.333 0.00 0.00 0.00 2.10
3478 4462 9.745880 TGTAAAGGAATATAAGAGCGTTTAGAG 57.254 33.333 0.00 0.00 0.00 2.43
3692 4722 0.532640 CTTTTGCCCGCCTTGCTTTT 60.533 50.000 0.00 0.00 0.00 2.27
3878 4975 9.607333 AGATGACTGGAATGGTTAAGATCTATA 57.393 33.333 0.00 0.00 0.00 1.31
3919 5016 9.624697 TGATTGTTATCAACATAAGTTTTCAGC 57.375 29.630 0.00 0.00 41.79 4.26
3920 5017 9.846248 GATTGTTATCAACATAAGTTTTCAGCT 57.154 29.630 0.00 0.00 41.79 4.24
3931 5028 8.818057 ACATAAGTTTTCAGCTTACTATTAGCG 58.182 33.333 0.00 0.00 43.37 4.26
3932 5029 8.818057 CATAAGTTTTCAGCTTACTATTAGCGT 58.182 33.333 0.00 0.00 43.37 5.07
3933 5030 7.668525 AAGTTTTCAGCTTACTATTAGCGTT 57.331 32.000 0.00 0.00 43.37 4.84
3934 5031 7.061752 AGTTTTCAGCTTACTATTAGCGTTG 57.938 36.000 0.00 0.00 43.37 4.10
3935 5032 6.872020 AGTTTTCAGCTTACTATTAGCGTTGA 59.128 34.615 0.00 0.00 43.37 3.18
3936 5033 7.386848 AGTTTTCAGCTTACTATTAGCGTTGAA 59.613 33.333 0.00 0.00 43.37 2.69
3937 5034 6.642683 TTCAGCTTACTATTAGCGTTGAAC 57.357 37.500 0.00 0.00 43.37 3.18
3938 5035 5.716094 TCAGCTTACTATTAGCGTTGAACA 58.284 37.500 0.00 0.00 43.37 3.18
3939 5036 6.160684 TCAGCTTACTATTAGCGTTGAACAA 58.839 36.000 0.00 0.00 43.37 2.83
3940 5037 6.647481 TCAGCTTACTATTAGCGTTGAACAAA 59.353 34.615 0.00 0.00 43.37 2.83
3941 5038 6.955963 CAGCTTACTATTAGCGTTGAACAAAG 59.044 38.462 0.00 0.00 43.37 2.77
4119 5268 6.272822 ACCGTTTCTTACCGTCTAACTAAT 57.727 37.500 0.00 0.00 0.00 1.73
4321 5506 6.217294 GTTTGCATTACTACCTAGGAGCTAG 58.783 44.000 17.98 9.60 34.16 3.42
4325 5510 6.782988 TGCATTACTACCTAGGAGCTAGAATT 59.217 38.462 17.98 0.00 36.26 2.17
4331 5516 8.605325 ACTACCTAGGAGCTAGAATTTTTGTA 57.395 34.615 17.98 0.00 36.26 2.41
4366 5551 3.956199 ACCCTGTCTATTTTGCATCCATG 59.044 43.478 0.00 0.00 0.00 3.66
4571 5766 2.515523 CTCTGGGAGCAATGGCCG 60.516 66.667 0.00 0.00 42.56 6.13
4666 5861 9.860650 ATATATGCTAGTCTTATACTCCCTCTG 57.139 37.037 0.00 0.00 39.80 3.35
4667 5862 5.648330 TGCTAGTCTTATACTCCCTCTGA 57.352 43.478 0.00 0.00 39.80 3.27
4668 5863 5.378332 TGCTAGTCTTATACTCCCTCTGAC 58.622 45.833 0.00 0.00 39.80 3.51
4669 5864 4.763279 GCTAGTCTTATACTCCCTCTGACC 59.237 50.000 0.00 0.00 39.80 4.02
4670 5865 4.187506 AGTCTTATACTCCCTCTGACCC 57.812 50.000 0.00 0.00 30.33 4.46
4671 5866 3.532232 AGTCTTATACTCCCTCTGACCCA 59.468 47.826 0.00 0.00 30.33 4.51
4672 5867 4.016479 AGTCTTATACTCCCTCTGACCCAA 60.016 45.833 0.00 0.00 30.33 4.12
4673 5868 4.715297 GTCTTATACTCCCTCTGACCCAAA 59.285 45.833 0.00 0.00 0.00 3.28
4674 5869 5.189145 GTCTTATACTCCCTCTGACCCAAAA 59.811 44.000 0.00 0.00 0.00 2.44
4675 5870 5.970640 TCTTATACTCCCTCTGACCCAAAAT 59.029 40.000 0.00 0.00 0.00 1.82
4676 5871 7.070821 GTCTTATACTCCCTCTGACCCAAAATA 59.929 40.741 0.00 0.00 0.00 1.40
4677 5872 7.794683 TCTTATACTCCCTCTGACCCAAAATAT 59.205 37.037 0.00 0.00 0.00 1.28
4678 5873 9.101325 CTTATACTCCCTCTGACCCAAAATATA 57.899 37.037 0.00 0.00 0.00 0.86
4679 5874 7.947782 ATACTCCCTCTGACCCAAAATATAA 57.052 36.000 0.00 0.00 0.00 0.98
4680 5875 6.253946 ACTCCCTCTGACCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
4681 5876 5.970640 ACTCCCTCTGACCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
4682 5877 6.447084 ACTCCCTCTGACCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
4683 5878 6.659824 TCCCTCTGACCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
4684 5879 5.527582 CCCTCTGACCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
4685 5880 6.113411 CCTCTGACCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
4686 5881 6.598064 CCTCTGACCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
4687 5882 7.120726 CCTCTGACCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
4688 5883 8.398878 TCTGACCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
4689 5884 8.852135 TCTGACCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
4690 5885 8.804688 TGACCCAAAATATAAGAACGTTTTTG 57.195 30.769 13.87 12.16 37.14 2.44
4691 5886 8.630917 TGACCCAAAATATAAGAACGTTTTTGA 58.369 29.630 13.87 2.81 38.79 2.69
4692 5887 8.806177 ACCCAAAATATAAGAACGTTTTTGAC 57.194 30.769 13.87 0.00 38.79 3.18
4693 5888 8.414778 ACCCAAAATATAAGAACGTTTTTGACA 58.585 29.630 13.87 0.01 38.79 3.58
4694 5889 8.696175 CCCAAAATATAAGAACGTTTTTGACAC 58.304 33.333 13.87 0.00 38.79 3.67
4695 5890 9.458374 CCAAAATATAAGAACGTTTTTGACACT 57.542 29.630 13.87 0.00 38.79 3.55
4700 5895 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
4701 5896 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
4702 5897 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
4703 5898 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
4718 5913 4.830826 CACTAGTGTCAGTGTAGTGTCA 57.169 45.455 15.06 0.00 40.89 3.58
4719 5914 5.183014 CACTAGTGTCAGTGTAGTGTCAA 57.817 43.478 15.06 0.00 40.89 3.18
4720 5915 5.588240 CACTAGTGTCAGTGTAGTGTCAAA 58.412 41.667 15.06 0.00 40.89 2.69
4721 5916 6.040247 CACTAGTGTCAGTGTAGTGTCAAAA 58.960 40.000 15.06 0.00 40.89 2.44
4722 5917 6.533723 CACTAGTGTCAGTGTAGTGTCAAAAA 59.466 38.462 15.06 0.00 40.89 1.94
4723 5918 5.796350 AGTGTCAGTGTAGTGTCAAAAAC 57.204 39.130 0.00 0.00 0.00 2.43
4724 5919 4.328983 AGTGTCAGTGTAGTGTCAAAAACG 59.671 41.667 0.00 0.00 0.00 3.60
4725 5920 4.092383 GTGTCAGTGTAGTGTCAAAAACGT 59.908 41.667 0.00 0.00 0.00 3.99
4726 5921 4.691685 TGTCAGTGTAGTGTCAAAAACGTT 59.308 37.500 0.00 0.00 0.00 3.99
4727 5922 5.163933 TGTCAGTGTAGTGTCAAAAACGTTC 60.164 40.000 0.00 0.00 0.00 3.95
4728 5923 5.063060 GTCAGTGTAGTGTCAAAAACGTTCT 59.937 40.000 0.00 0.00 0.00 3.01
4729 5924 5.640357 TCAGTGTAGTGTCAAAAACGTTCTT 59.360 36.000 0.00 0.00 0.00 2.52
4730 5925 6.812656 TCAGTGTAGTGTCAAAAACGTTCTTA 59.187 34.615 0.00 0.00 0.00 2.10
4731 5926 7.493320 TCAGTGTAGTGTCAAAAACGTTCTTAT 59.507 33.333 0.00 0.00 0.00 1.73
4732 5927 8.757789 CAGTGTAGTGTCAAAAACGTTCTTATA 58.242 33.333 0.00 0.00 0.00 0.98
4733 5928 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
4739 5934 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
4740 5935 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
4741 5936 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
4742 5937 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
4743 5938 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
4744 5939 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
4745 5940 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
4746 5941 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
4747 5942 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
4748 5943 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
4749 5944 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4789 5984 4.503817 GGATCATTCTGTCGGATGGATTGA 60.504 45.833 0.00 8.83 0.00 2.57
4800 5995 2.960384 GGATGGATTGATGCATTGGTGA 59.040 45.455 0.00 0.00 39.04 4.02
4950 6145 3.946558 GGTATACTCCTCTCGACAGTTGT 59.053 47.826 2.25 0.00 0.00 3.32
4964 6159 2.292267 CAGTTGTCTCTTGTTGCCTGT 58.708 47.619 0.00 0.00 0.00 4.00
4978 6173 2.997980 TGCCTGTTCTGTCAAAGTCAA 58.002 42.857 0.00 0.00 0.00 3.18
4982 6177 4.191544 CCTGTTCTGTCAAAGTCAAGTGA 58.808 43.478 0.00 0.00 0.00 3.41
5227 6422 7.665559 ACTCAGTTTGTTCCTTTATGCAATAGA 59.334 33.333 0.00 0.00 0.00 1.98
5274 8572 7.720957 ACATTCATATATTTGGTGCTTCTGCTA 59.279 33.333 0.00 0.00 40.48 3.49
5411 8713 7.391148 TCCTTATTGAGTATCTTTTGGTTGC 57.609 36.000 0.00 0.00 34.92 4.17
5510 8813 8.135529 GCCACTAGATTGTTAAATTAATGACCC 58.864 37.037 0.00 0.00 0.00 4.46
5568 8871 1.620323 GATTTCCTTTGGCTGGTTGCT 59.380 47.619 0.00 0.00 42.39 3.91
5625 8929 5.105187 AGCTCCTAATTTCCTTCAAAATGCC 60.105 40.000 0.00 0.00 0.00 4.40
5647 8951 4.106197 CGACCACTCTAGTTACATGCTTC 58.894 47.826 0.00 0.00 0.00 3.86
5704 9008 5.831525 TCTTATTCCAGATTTGCAGCATCAT 59.168 36.000 0.00 0.00 0.00 2.45
5733 9037 4.771114 TCGACCTTTATGGGTGATGAAT 57.229 40.909 0.00 0.00 40.06 2.57
5790 9094 9.177608 CCTATCATTTTCAACAGAGGTTTGATA 57.822 33.333 0.00 0.00 33.66 2.15
5977 9284 1.613836 GCAAGCTTATGCCTATGCCT 58.386 50.000 0.00 0.00 40.49 4.75
5978 9285 2.783135 GCAAGCTTATGCCTATGCCTA 58.217 47.619 0.00 0.00 40.49 3.93
5979 9286 3.350833 GCAAGCTTATGCCTATGCCTAT 58.649 45.455 0.00 0.00 40.49 2.57
5980 9287 3.128242 GCAAGCTTATGCCTATGCCTATG 59.872 47.826 0.00 3.16 40.49 2.23
5981 9288 2.996631 AGCTTATGCCTATGCCTATGC 58.003 47.619 3.72 5.50 38.31 3.14
6219 9529 3.882444 TGATTCATGCTTCTCCTTCAGG 58.118 45.455 0.00 0.00 0.00 3.86
6235 9545 4.321230 CCTTCAGGTGATTGGTAAACAAGC 60.321 45.833 0.00 0.00 45.46 4.01
6416 9726 8.883954 TTTTGATTGCATTGATTCTTTGTGTA 57.116 26.923 0.00 0.00 0.00 2.90
6420 9730 5.050644 TGCATTGATTCTTTGTGTAGCAG 57.949 39.130 0.00 0.00 0.00 4.24
6509 9820 3.005050 CCTTTGATTTTGCTGTGCAGAGA 59.995 43.478 16.28 0.00 40.61 3.10
6577 9959 9.298774 GTACTACTGTAGCAAATAGTTTAGTGG 57.701 37.037 14.55 0.00 0.00 4.00
6671 10053 7.541783 CAGCAATAAATTTCATTTCGTCCTTCA 59.458 33.333 0.00 0.00 33.82 3.02
6695 10078 0.036952 ACTCCATCTTGTGCCGTCTG 60.037 55.000 0.00 0.00 0.00 3.51
6711 10094 6.257849 GTGCCGTCTGTCTTCATTATTTATGA 59.742 38.462 0.00 0.00 41.50 2.15
6735 10118 1.136252 CGTGAATCAGGTTGTTGAGCG 60.136 52.381 0.00 0.00 0.00 5.03
6770 10153 7.067496 AGACAACTTTCTCTATGTCCAGAAA 57.933 36.000 0.00 0.00 42.39 2.52
6831 10214 0.523072 CCTGAAGTTGGACATTGCCG 59.477 55.000 0.00 0.00 0.00 5.69
6855 10238 1.656095 CTTTCGACTTCGTCAGATGGC 59.344 52.381 0.00 0.00 40.80 4.40
6878 10261 1.435515 CCTACTCGAGGTGCTCTGC 59.564 63.158 18.41 0.00 40.98 4.26
6879 10262 1.435515 CTACTCGAGGTGCTCTGCC 59.564 63.158 18.41 0.00 0.00 4.85
6880 10263 1.304134 TACTCGAGGTGCTCTGCCA 60.304 57.895 18.41 0.00 0.00 4.92
6881 10264 1.595993 TACTCGAGGTGCTCTGCCAC 61.596 60.000 18.41 0.00 35.00 5.01
6882 10265 2.917227 TCGAGGTGCTCTGCCACA 60.917 61.111 0.00 0.00 37.46 4.17
6914 10306 4.517832 GGTCAGAGATGCATTGCAATATCA 59.482 41.667 16.46 16.73 43.62 2.15
6921 10313 4.389890 TGCATTGCAATATCACTTTCCC 57.610 40.909 12.53 0.00 34.76 3.97
7094 10508 4.705991 TCAAGCCTATCATGCACAAATTGA 59.294 37.500 0.00 0.00 0.00 2.57
7099 10513 4.885907 CCTATCATGCACAAATTGACCTCT 59.114 41.667 0.00 0.00 0.00 3.69
7155 10569 7.485810 GCTCTTTTCTTAAACCCTTACAAACA 58.514 34.615 0.00 0.00 0.00 2.83
7181 10595 3.017048 TGAAGGCCACCCAATCAATAG 57.983 47.619 5.01 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 44 7.067981 TCCAAACCTTTTTGAATTCCCAAATTG 59.932 33.333 2.27 4.26 44.38 2.32
135 160 6.451393 ACGCCTTTTGAATAAGCAAACATTA 58.549 32.000 0.00 0.00 37.48 1.90
215 253 9.267084 TGAATTGGCTAAAAGTTGTTTAATTCC 57.733 29.630 0.00 0.00 30.84 3.01
405 508 5.049818 GGCGAACATTTCTAGAATGGATGAG 60.050 44.000 18.31 11.60 32.14 2.90
525 652 9.868277 ACAGTTTTCAAATTCATGAACACTTTA 57.132 25.926 11.07 0.00 43.99 1.85
578 707 3.246619 GTGTGTTGCAACGGAAGAAAAA 58.753 40.909 23.79 0.57 0.00 1.94
579 708 2.729467 CGTGTGTTGCAACGGAAGAAAA 60.729 45.455 23.79 1.33 0.00 2.29
580 709 1.202087 CGTGTGTTGCAACGGAAGAAA 60.202 47.619 23.79 2.11 0.00 2.52
581 710 0.375454 CGTGTGTTGCAACGGAAGAA 59.625 50.000 23.79 2.89 0.00 2.52
582 711 1.433053 CCGTGTGTTGCAACGGAAGA 61.433 55.000 23.79 3.67 41.17 2.87
583 712 1.010125 CCGTGTGTTGCAACGGAAG 60.010 57.895 23.79 14.33 41.17 3.46
584 713 2.473760 CCCGTGTGTTGCAACGGAA 61.474 57.895 25.44 11.30 41.17 4.30
585 714 2.897846 CCCGTGTGTTGCAACGGA 60.898 61.111 25.44 12.15 41.17 4.69
586 715 4.622456 GCCCGTGTGTTGCAACGG 62.622 66.667 23.79 21.12 39.63 4.44
587 716 4.622456 GGCCCGTGTGTTGCAACG 62.622 66.667 23.79 13.15 0.00 4.10
588 717 4.279043 GGGCCCGTGTGTTGCAAC 62.279 66.667 22.83 22.83 0.00 4.17
589 718 4.514585 AGGGCCCGTGTGTTGCAA 62.515 61.111 18.44 0.00 0.00 4.08
590 719 4.514585 AAGGGCCCGTGTGTTGCA 62.515 61.111 18.44 0.00 0.00 4.08
591 720 2.304901 AAAAAGGGCCCGTGTGTTGC 62.305 55.000 18.44 0.00 0.00 4.17
592 721 1.033574 TAAAAAGGGCCCGTGTGTTG 58.966 50.000 18.44 0.00 0.00 3.33
593 722 1.034356 GTAAAAAGGGCCCGTGTGTT 58.966 50.000 18.44 11.26 0.00 3.32
594 723 0.184211 AGTAAAAAGGGCCCGTGTGT 59.816 50.000 18.44 4.60 0.00 3.72
595 724 2.081462 CTAGTAAAAAGGGCCCGTGTG 58.919 52.381 18.44 0.00 0.00 3.82
596 725 1.701292 ACTAGTAAAAAGGGCCCGTGT 59.299 47.619 18.44 4.91 0.00 4.49
597 726 2.484742 ACTAGTAAAAAGGGCCCGTG 57.515 50.000 18.44 1.14 0.00 4.94
598 727 3.584406 ACTTACTAGTAAAAAGGGCCCGT 59.416 43.478 18.44 11.44 31.21 5.28
599 728 4.212143 ACTTACTAGTAAAAAGGGCCCG 57.788 45.455 18.44 0.08 31.21 6.13
600 729 9.334947 CTTATTACTTACTAGTAAAAAGGGCCC 57.665 37.037 16.46 16.46 46.80 5.80
601 730 9.896645 ACTTATTACTTACTAGTAAAAAGGGCC 57.103 33.333 15.95 0.00 46.80 5.80
635 764 6.638063 CACATGAGTCAGTTTACCAAAACATG 59.362 38.462 0.00 0.00 46.18 3.21
638 767 5.971202 CACACATGAGTCAGTTTACCAAAAC 59.029 40.000 0.00 0.00 44.47 2.43
640 769 5.432645 TCACACATGAGTCAGTTTACCAAA 58.567 37.500 0.00 0.00 0.00 3.28
669 798 3.181486 GCTTCTCCGGGATTCCATTTTTC 60.181 47.826 0.00 0.00 0.00 2.29
675 804 0.325671 AGAGCTTCTCCGGGATTCCA 60.326 55.000 0.00 0.00 0.00 3.53
677 806 1.408969 AGAGAGCTTCTCCGGGATTC 58.591 55.000 0.00 0.00 44.42 2.52
695 827 0.671781 CAGGACCGAGCAGGAACAAG 60.672 60.000 5.19 0.00 45.00 3.16
696 828 1.371183 CAGGACCGAGCAGGAACAA 59.629 57.895 5.19 0.00 45.00 2.83
738 870 1.300542 CGGCGTGTGGGCAATTTTT 60.301 52.632 0.00 0.00 42.43 1.94
754 886 1.411977 TGGGATATTTTTGCATGCCGG 59.588 47.619 16.68 0.00 0.00 6.13
772 905 2.069273 CTAGTCGGCTCTGTTTGTTGG 58.931 52.381 0.00 0.00 0.00 3.77
910 1052 5.132043 AGAAGGTATATAGATCTCGGGGG 57.868 47.826 0.00 0.00 0.00 5.40
954 1096 1.912371 GAAGCCGGAGTTGCGGAAAG 61.912 60.000 16.51 0.00 0.00 2.62
1043 1194 1.146358 GAAGAGGGCGACGGAAATCG 61.146 60.000 0.00 0.00 45.09 3.34
1110 1261 1.273896 GGGGAGAAGAAGAAGGGGAGA 60.274 57.143 0.00 0.00 0.00 3.71
1192 1352 2.587194 CGAAGCGGAGATGGGCAG 60.587 66.667 0.00 0.00 0.00 4.85
1251 1411 2.121608 GGCAATGGGGTTTGGGGA 59.878 61.111 0.00 0.00 0.00 4.81
1324 1484 1.511850 CCAGATGCTGTTTCGTGTGA 58.488 50.000 0.00 0.00 0.00 3.58
1331 1491 1.377725 CTCCCGCCAGATGCTGTTT 60.378 57.895 0.00 0.00 38.05 2.83
1403 1563 4.893601 TTGCGTTGGTGTCGGCGA 62.894 61.111 4.99 4.99 0.00 5.54
1819 2005 9.630098 CTACATTGTTCAATAATCAAACAAGCT 57.370 29.630 0.00 0.00 43.73 3.74
1849 2035 5.105228 ACGCCTTAGCCATGTTAAAGTACTA 60.105 40.000 0.00 0.00 34.57 1.82
1852 2040 3.936453 CACGCCTTAGCCATGTTAAAGTA 59.064 43.478 0.00 0.00 34.57 2.24
1854 2042 2.477863 GCACGCCTTAGCCATGTTAAAG 60.478 50.000 0.00 0.00 34.57 1.85
1856 2044 1.091537 GCACGCCTTAGCCATGTTAA 58.908 50.000 0.00 0.00 34.57 2.01
1869 2063 2.172372 CAGAGCATGAGAGCACGCC 61.172 63.158 0.00 0.00 32.71 5.68
1871 2065 1.937278 AATCAGAGCATGAGAGCACG 58.063 50.000 0.00 0.00 42.53 5.34
1898 2092 3.679083 GCTACCTTGTGGAATAAGCGAGT 60.679 47.826 0.00 0.00 33.22 4.18
1901 2095 2.906354 AGCTACCTTGTGGAATAAGCG 58.094 47.619 0.00 0.00 33.22 4.68
1902 2096 4.459337 ACAAAGCTACCTTGTGGAATAAGC 59.541 41.667 1.47 0.00 33.22 3.09
1906 2100 2.558359 GCACAAAGCTACCTTGTGGAAT 59.442 45.455 24.17 0.00 41.15 3.01
1907 2101 1.953686 GCACAAAGCTACCTTGTGGAA 59.046 47.619 24.17 0.00 41.15 3.53
1948 2142 3.581024 ACTACGTTGTGGAATAAGCGA 57.419 42.857 0.73 0.00 0.00 4.93
1950 2144 7.998753 ATTACTACTACGTTGTGGAATAAGC 57.001 36.000 19.19 0.00 0.00 3.09
2014 2212 1.750193 AACCACACAGGACAACACTG 58.250 50.000 0.00 0.00 41.22 3.66
2023 2221 0.593128 GCACTAGCAAACCACACAGG 59.407 55.000 0.00 0.00 41.82 4.00
2091 2289 3.265791 CAATCCCAACAGAGCACTCTAC 58.734 50.000 0.00 0.00 37.98 2.59
2097 2295 1.004277 GGGTACAATCCCAACAGAGCA 59.996 52.381 0.00 0.00 46.30 4.26
2123 2321 6.045072 AGGACGGTATAACAAGATTTGACA 57.955 37.500 0.00 0.00 0.00 3.58
2124 2322 7.222224 CAGTAGGACGGTATAACAAGATTTGAC 59.778 40.741 0.00 0.00 0.00 3.18
2134 2332 7.538575 TGAAACTAACAGTAGGACGGTATAAC 58.461 38.462 0.00 0.00 0.00 1.89
2359 2571 8.451908 AAAGGAATATGCTATGACAAGGTTAC 57.548 34.615 0.00 0.00 0.00 2.50
2378 2590 6.827762 ACCAAATCTGAAATTTGCAAAAGGAA 59.172 30.769 17.19 2.02 37.60 3.36
2459 2905 8.794335 AGACAAAATAATTACCAGACTTCCTC 57.206 34.615 0.00 0.00 0.00 3.71
2486 2932 2.044793 ATTGAGTTCCACCTCCAGGA 57.955 50.000 0.00 0.00 38.94 3.86
2569 3017 5.636543 GGAAATTCATGAGGTCAAAAGCAAG 59.363 40.000 0.00 0.00 0.00 4.01
2580 3028 5.657474 CAACTCCAATGGAAATTCATGAGG 58.343 41.667 2.61 0.00 0.00 3.86
2631 3079 8.918202 AAAGTTAAGTATCACCAAGAATGTGA 57.082 30.769 0.00 0.00 45.98 3.58
2660 3109 0.103572 ACTTACGGTGTGCAGTCGTT 59.896 50.000 12.90 0.00 38.19 3.85
2736 3185 6.764379 AGAGTTCAAAAGGAGACCTAGAAAG 58.236 40.000 0.00 0.00 31.13 2.62
2737 3186 6.749036 AGAGTTCAAAAGGAGACCTAGAAA 57.251 37.500 0.00 0.00 31.13 2.52
2738 3187 6.749036 AAGAGTTCAAAAGGAGACCTAGAA 57.251 37.500 0.00 0.00 31.13 2.10
2739 3188 7.728981 TCTTAAGAGTTCAAAAGGAGACCTAGA 59.271 37.037 0.00 0.00 31.13 2.43
2740 3189 7.815549 GTCTTAAGAGTTCAAAAGGAGACCTAG 59.184 40.741 5.12 0.00 31.13 3.02
2741 3190 7.509659 AGTCTTAAGAGTTCAAAAGGAGACCTA 59.490 37.037 5.12 0.00 33.34 3.08
2742 3191 6.327887 AGTCTTAAGAGTTCAAAAGGAGACCT 59.672 38.462 5.12 0.00 33.34 3.85
2743 3192 6.526526 AGTCTTAAGAGTTCAAAAGGAGACC 58.473 40.000 5.12 0.00 33.34 3.85
2744 3193 9.713713 AATAGTCTTAAGAGTTCAAAAGGAGAC 57.286 33.333 17.79 0.00 33.13 3.36
2747 3196 9.847224 ACAAATAGTCTTAAGAGTTCAAAAGGA 57.153 29.630 17.79 0.00 0.00 3.36
2755 3204 9.939802 ACGGAAATACAAATAGTCTTAAGAGTT 57.060 29.630 17.79 6.41 0.00 3.01
2756 3205 9.939802 AACGGAAATACAAATAGTCTTAAGAGT 57.060 29.630 16.83 16.83 0.00 3.24
2761 3210 9.602568 TGCATAACGGAAATACAAATAGTCTTA 57.397 29.630 0.00 0.00 0.00 2.10
2762 3211 8.500753 TGCATAACGGAAATACAAATAGTCTT 57.499 30.769 0.00 0.00 0.00 3.01
2763 3212 8.500753 TTGCATAACGGAAATACAAATAGTCT 57.499 30.769 0.00 0.00 0.00 3.24
2764 3213 8.395633 ACTTGCATAACGGAAATACAAATAGTC 58.604 33.333 0.00 0.00 0.00 2.59
2765 3214 8.276252 ACTTGCATAACGGAAATACAAATAGT 57.724 30.769 0.00 0.00 0.00 2.12
2768 3217 9.515020 CATTACTTGCATAACGGAAATACAAAT 57.485 29.630 0.00 0.00 0.00 2.32
2769 3218 7.971168 CCATTACTTGCATAACGGAAATACAAA 59.029 33.333 0.00 0.00 0.00 2.83
2770 3219 7.337184 TCCATTACTTGCATAACGGAAATACAA 59.663 33.333 0.00 0.00 0.00 2.41
2771 3220 6.824196 TCCATTACTTGCATAACGGAAATACA 59.176 34.615 0.00 0.00 0.00 2.29
2772 3221 7.254227 TCCATTACTTGCATAACGGAAATAC 57.746 36.000 0.00 0.00 0.00 1.89
2773 3222 7.867305 TTCCATTACTTGCATAACGGAAATA 57.133 32.000 5.38 0.00 34.37 1.40
2774 3223 6.767524 TTCCATTACTTGCATAACGGAAAT 57.232 33.333 5.38 0.00 34.37 2.17
2775 3224 6.349777 CCTTTCCATTACTTGCATAACGGAAA 60.350 38.462 15.73 15.73 41.63 3.13
2776 3225 5.124776 CCTTTCCATTACTTGCATAACGGAA 59.875 40.000 3.99 3.99 35.23 4.30
2777 3226 4.638421 CCTTTCCATTACTTGCATAACGGA 59.362 41.667 0.00 0.00 0.00 4.69
2778 3227 4.202010 CCCTTTCCATTACTTGCATAACGG 60.202 45.833 0.00 0.00 0.00 4.44
2779 3228 4.202010 CCCCTTTCCATTACTTGCATAACG 60.202 45.833 0.00 0.00 0.00 3.18
2780 3229 4.709886 ACCCCTTTCCATTACTTGCATAAC 59.290 41.667 0.00 0.00 0.00 1.89
2781 3230 4.941713 ACCCCTTTCCATTACTTGCATAA 58.058 39.130 0.00 0.00 0.00 1.90
2782 3231 4.601406 ACCCCTTTCCATTACTTGCATA 57.399 40.909 0.00 0.00 0.00 3.14
2783 3232 3.473113 ACCCCTTTCCATTACTTGCAT 57.527 42.857 0.00 0.00 0.00 3.96
2784 3233 2.990740 ACCCCTTTCCATTACTTGCA 57.009 45.000 0.00 0.00 0.00 4.08
2785 3234 4.441495 GCATAACCCCTTTCCATTACTTGC 60.441 45.833 0.00 0.00 0.00 4.01
2786 3235 4.099419 GGCATAACCCCTTTCCATTACTTG 59.901 45.833 0.00 0.00 0.00 3.16
2787 3236 4.286707 GGCATAACCCCTTTCCATTACTT 58.713 43.478 0.00 0.00 0.00 2.24
2788 3237 3.910989 GGCATAACCCCTTTCCATTACT 58.089 45.455 0.00 0.00 0.00 2.24
2801 3250 0.892063 TTTTTGAGCCGGGCATAACC 59.108 50.000 23.09 5.18 37.93 2.85
2821 3270 5.664294 TCATAGGAATGCAGCATGTTTTT 57.336 34.783 9.18 0.00 39.31 1.94
2822 3271 5.864418 ATCATAGGAATGCAGCATGTTTT 57.136 34.783 9.18 0.00 39.31 2.43
2823 3272 5.864418 AATCATAGGAATGCAGCATGTTT 57.136 34.783 9.18 0.00 39.31 2.83
2824 3273 6.128090 CGATAATCATAGGAATGCAGCATGTT 60.128 38.462 9.18 0.00 39.31 2.71
2825 3274 5.353400 CGATAATCATAGGAATGCAGCATGT 59.647 40.000 9.18 0.00 39.31 3.21
2826 3275 5.220796 CCGATAATCATAGGAATGCAGCATG 60.221 44.000 9.18 0.00 40.87 4.06
2827 3276 4.880120 CCGATAATCATAGGAATGCAGCAT 59.120 41.667 0.52 0.52 32.76 3.79
2828 3277 4.256110 CCGATAATCATAGGAATGCAGCA 58.744 43.478 0.00 0.00 32.76 4.41
2829 3278 4.093998 CACCGATAATCATAGGAATGCAGC 59.906 45.833 0.00 0.00 31.69 5.25
2830 3279 4.093998 GCACCGATAATCATAGGAATGCAG 59.906 45.833 0.00 0.00 32.51 4.41
2831 3280 4.002982 GCACCGATAATCATAGGAATGCA 58.997 43.478 0.00 0.00 32.51 3.96
2832 3281 4.002982 TGCACCGATAATCATAGGAATGC 58.997 43.478 0.00 0.00 32.72 3.56
2833 3282 5.702670 ACTTGCACCGATAATCATAGGAATG 59.297 40.000 0.00 0.00 31.69 2.67
2834 3283 5.869579 ACTTGCACCGATAATCATAGGAAT 58.130 37.500 0.00 0.00 31.69 3.01
2835 3284 5.290493 ACTTGCACCGATAATCATAGGAA 57.710 39.130 0.00 0.00 31.69 3.36
2836 3285 4.955811 ACTTGCACCGATAATCATAGGA 57.044 40.909 0.00 0.00 31.69 2.94
3099 4083 1.301009 CGGAATTCCCCGCTCTAGC 60.301 63.158 19.01 0.00 43.25 3.42
3123 4107 1.680735 TGTGTTCCAATCACTGCCAAC 59.319 47.619 0.00 0.00 36.83 3.77
3201 4185 3.786656 GCCATCAGCATACCAGTGA 57.213 52.632 0.00 0.00 42.97 3.41
3287 4271 3.019564 AGATTCCTTTCCTCCGCAAATG 58.980 45.455 0.00 0.00 0.00 2.32
3390 4374 1.093972 TACACAGGAATTGCATGGCG 58.906 50.000 0.00 0.00 31.20 5.69
3392 4376 7.980662 TCATATTTTTACACAGGAATTGCATGG 59.019 33.333 0.00 0.00 31.20 3.66
3414 4398 9.936759 TTTTTGTAGAGTACATGTGTGATCATA 57.063 29.630 9.11 0.00 38.68 2.15
3464 4448 7.912056 TTGACTACTACTCTAAACGCTCTTA 57.088 36.000 0.00 0.00 0.00 2.10
3465 4449 6.814506 TTGACTACTACTCTAAACGCTCTT 57.185 37.500 0.00 0.00 0.00 2.85
3466 4450 7.551974 TGTATTGACTACTACTCTAAACGCTCT 59.448 37.037 0.00 0.00 0.00 4.09
3467 4451 7.639461 GTGTATTGACTACTACTCTAAACGCTC 59.361 40.741 0.00 0.00 0.00 5.03
3468 4452 7.120285 TGTGTATTGACTACTACTCTAAACGCT 59.880 37.037 0.00 0.00 0.00 5.07
3469 4453 7.246311 TGTGTATTGACTACTACTCTAAACGC 58.754 38.462 0.00 0.00 0.00 4.84
3583 4613 8.915057 AGCAACTCATATATTTAGAGCACATT 57.085 30.769 12.28 0.00 32.71 2.71
3603 4633 4.613031 GCACTTCGAAAATACTCAAGCAAC 59.387 41.667 0.00 0.00 0.00 4.17
3619 4649 5.120053 GGAACCCATTTTTATTTGCACTTCG 59.880 40.000 0.00 0.00 0.00 3.79
3692 4722 1.410882 GCACCAAGCCACCAACTAAAA 59.589 47.619 0.00 0.00 37.23 1.52
3911 5008 7.057149 TCAACGCTAATAGTAAGCTGAAAAC 57.943 36.000 0.00 0.00 37.85 2.43
3919 5016 6.092259 AGGCTTTGTTCAACGCTAATAGTAAG 59.908 38.462 12.33 0.00 0.00 2.34
3920 5017 5.935789 AGGCTTTGTTCAACGCTAATAGTAA 59.064 36.000 12.33 0.00 0.00 2.24
3921 5018 5.484715 AGGCTTTGTTCAACGCTAATAGTA 58.515 37.500 12.33 0.00 0.00 1.82
3922 5019 4.324267 AGGCTTTGTTCAACGCTAATAGT 58.676 39.130 12.33 0.00 0.00 2.12
3923 5020 4.946784 AGGCTTTGTTCAACGCTAATAG 57.053 40.909 12.33 0.00 0.00 1.73
3924 5021 5.484715 AGTAGGCTTTGTTCAACGCTAATA 58.515 37.500 12.33 3.34 0.00 0.98
3925 5022 4.324267 AGTAGGCTTTGTTCAACGCTAAT 58.676 39.130 12.33 4.08 0.00 1.73
3926 5023 3.735591 AGTAGGCTTTGTTCAACGCTAA 58.264 40.909 12.33 1.06 0.00 3.09
3927 5024 3.396260 AGTAGGCTTTGTTCAACGCTA 57.604 42.857 12.33 2.95 0.00 4.26
3928 5025 2.256117 AGTAGGCTTTGTTCAACGCT 57.744 45.000 12.33 3.70 0.00 5.07
3929 5026 4.680171 AATAGTAGGCTTTGTTCAACGC 57.320 40.909 0.00 5.63 0.00 4.84
3930 5027 6.367969 ACACTAATAGTAGGCTTTGTTCAACG 59.632 38.462 1.80 0.00 0.00 4.10
3931 5028 7.668525 ACACTAATAGTAGGCTTTGTTCAAC 57.331 36.000 1.80 0.00 0.00 3.18
3932 5029 7.934665 TCAACACTAATAGTAGGCTTTGTTCAA 59.065 33.333 1.80 0.00 0.00 2.69
3933 5030 7.446769 TCAACACTAATAGTAGGCTTTGTTCA 58.553 34.615 1.80 0.00 0.00 3.18
3934 5031 7.900782 TCAACACTAATAGTAGGCTTTGTTC 57.099 36.000 1.80 0.00 0.00 3.18
3935 5032 7.717875 TGTTCAACACTAATAGTAGGCTTTGTT 59.282 33.333 1.80 0.65 0.00 2.83
3936 5033 7.221450 TGTTCAACACTAATAGTAGGCTTTGT 58.779 34.615 1.80 0.00 0.00 2.83
3937 5034 7.667043 TGTTCAACACTAATAGTAGGCTTTG 57.333 36.000 1.80 2.45 0.00 2.77
3938 5035 8.685838 TTTGTTCAACACTAATAGTAGGCTTT 57.314 30.769 1.80 0.00 0.00 3.51
3939 5036 8.863872 ATTTGTTCAACACTAATAGTAGGCTT 57.136 30.769 1.80 0.00 30.04 4.35
3940 5037 8.863872 AATTTGTTCAACACTAATAGTAGGCT 57.136 30.769 1.80 0.00 31.42 4.58
4212 5397 8.704234 CACTTGTCTAACTGAAAAGATGACTAC 58.296 37.037 2.96 0.00 41.46 2.73
4215 5400 6.483640 ACCACTTGTCTAACTGAAAAGATGAC 59.516 38.462 2.96 0.00 41.46 3.06
4321 5506 7.094975 GGGTTGTTGGCCTAAATACAAAAATTC 60.095 37.037 3.32 0.00 32.84 2.17
4325 5510 4.902448 AGGGTTGTTGGCCTAAATACAAAA 59.098 37.500 3.32 0.00 32.84 2.44
4331 5516 2.110011 AGACAGGGTTGTTGGCCTAAAT 59.890 45.455 3.32 0.00 37.76 1.40
4366 5551 5.886960 ATTAGCAAGAAGTTGATCACCAC 57.113 39.130 0.00 0.00 35.46 4.16
4571 5766 4.034510 CGAAGAAAATGTACCATGGAGAGC 59.965 45.833 21.47 5.72 0.00 4.09
4659 5854 6.631766 CGTTCTTATATTTTGGGTCAGAGGGA 60.632 42.308 0.00 0.00 0.00 4.20
4660 5855 5.527582 CGTTCTTATATTTTGGGTCAGAGGG 59.472 44.000 0.00 0.00 0.00 4.30
4661 5856 6.113411 ACGTTCTTATATTTTGGGTCAGAGG 58.887 40.000 0.00 0.00 0.00 3.69
4662 5857 7.611213 AACGTTCTTATATTTTGGGTCAGAG 57.389 36.000 0.00 0.00 0.00 3.35
4663 5858 7.989416 AAACGTTCTTATATTTTGGGTCAGA 57.011 32.000 0.00 0.00 0.00 3.27
4664 5859 8.911662 CAAAAACGTTCTTATATTTTGGGTCAG 58.088 33.333 0.00 0.00 37.34 3.51
4665 5860 8.630917 TCAAAAACGTTCTTATATTTTGGGTCA 58.369 29.630 15.53 0.00 39.94 4.02
4666 5861 8.908678 GTCAAAAACGTTCTTATATTTTGGGTC 58.091 33.333 15.53 6.82 39.94 4.46
4667 5862 8.414778 TGTCAAAAACGTTCTTATATTTTGGGT 58.585 29.630 15.53 0.00 39.94 4.51
4668 5863 8.696175 GTGTCAAAAACGTTCTTATATTTTGGG 58.304 33.333 15.53 0.00 39.94 4.12
4669 5864 9.458374 AGTGTCAAAAACGTTCTTATATTTTGG 57.542 29.630 15.53 0.00 39.94 3.28
4674 5869 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
4675 5870 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
4676 5871 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
4677 5872 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
4678 5873 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
4679 5874 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
4680 5875 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
4698 5893 5.847111 TTTGACACTACACTGACACTAGT 57.153 39.130 0.00 0.00 0.00 2.57
4699 5894 6.291637 CGTTTTTGACACTACACTGACACTAG 60.292 42.308 0.00 0.00 0.00 2.57
4700 5895 5.517411 CGTTTTTGACACTACACTGACACTA 59.483 40.000 0.00 0.00 0.00 2.74
4701 5896 4.328983 CGTTTTTGACACTACACTGACACT 59.671 41.667 0.00 0.00 0.00 3.55
4702 5897 4.092383 ACGTTTTTGACACTACACTGACAC 59.908 41.667 0.00 0.00 0.00 3.67
4703 5898 4.247258 ACGTTTTTGACACTACACTGACA 58.753 39.130 0.00 0.00 0.00 3.58
4704 5899 4.852609 ACGTTTTTGACACTACACTGAC 57.147 40.909 0.00 0.00 0.00 3.51
4705 5900 5.172934 AGAACGTTTTTGACACTACACTGA 58.827 37.500 0.46 0.00 0.00 3.41
4706 5901 5.464965 AGAACGTTTTTGACACTACACTG 57.535 39.130 0.46 0.00 0.00 3.66
4707 5902 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
4713 5908 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
4714 5909 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
4715 5910 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
4716 5911 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
4717 5912 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
4718 5913 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
4719 5914 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
4720 5915 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
4721 5916 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
4722 5917 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
4723 5918 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
4724 5919 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
4725 5920 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
4726 5921 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4727 5922 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4728 5923 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4729 5924 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4730 5925 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4731 5926 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
4732 5927 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
4733 5928 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
4734 5929 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
4735 5930 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
4736 5931 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
4737 5932 1.397672 GTAACTACTCCCTCCGTCCC 58.602 60.000 0.00 0.00 0.00 4.46
4738 5933 1.341383 TGGTAACTACTCCCTCCGTCC 60.341 57.143 0.00 0.00 37.61 4.79
4739 5934 2.022934 CTGGTAACTACTCCCTCCGTC 58.977 57.143 0.00 0.00 37.61 4.79
4740 5935 1.357079 ACTGGTAACTACTCCCTCCGT 59.643 52.381 0.00 0.00 37.61 4.69
4741 5936 1.749634 CACTGGTAACTACTCCCTCCG 59.250 57.143 0.00 0.00 37.61 4.63
4742 5937 2.108970 CCACTGGTAACTACTCCCTCC 58.891 57.143 0.00 0.00 37.61 4.30
4743 5938 2.817665 ACCACTGGTAACTACTCCCTC 58.182 52.381 0.00 0.00 32.11 4.30
4744 5939 3.271153 AACCACTGGTAACTACTCCCT 57.729 47.619 0.00 0.00 33.12 4.20
4745 5940 3.450096 CCTAACCACTGGTAACTACTCCC 59.550 52.174 0.00 0.00 33.12 4.30
4746 5941 4.347607 TCCTAACCACTGGTAACTACTCC 58.652 47.826 0.00 0.00 33.12 3.85
4747 5942 5.655532 TGATCCTAACCACTGGTAACTACTC 59.344 44.000 0.00 0.00 33.12 2.59
4748 5943 5.586877 TGATCCTAACCACTGGTAACTACT 58.413 41.667 0.00 0.00 33.12 2.57
4749 5944 5.927281 TGATCCTAACCACTGGTAACTAC 57.073 43.478 0.00 0.00 33.12 2.73
4800 5995 2.737544 TGGCACAAATCATACATGGCT 58.262 42.857 0.00 0.00 36.82 4.75
4950 6145 2.170397 TGACAGAACAGGCAACAAGAGA 59.830 45.455 0.00 0.00 41.41 3.10
4964 6159 5.097742 TCCTTCACTTGACTTTGACAGAA 57.902 39.130 0.00 0.00 0.00 3.02
4978 6173 2.378547 TGGGCCAACTATTTCCTTCACT 59.621 45.455 2.13 0.00 0.00 3.41
4982 6177 4.420214 AGGATATGGGCCAACTATTTCCTT 59.580 41.667 11.89 0.00 42.87 3.36
5262 6457 0.249657 CGGGATCTAGCAGAAGCACC 60.250 60.000 0.00 0.00 45.49 5.01
5274 8572 2.749621 GCAAACATCTTCAACGGGATCT 59.250 45.455 0.00 0.00 0.00 2.75
5411 8713 5.413309 AAACAGTATCCTCCTGTCTTCTG 57.587 43.478 0.00 0.00 42.17 3.02
5485 8788 9.184523 TGGGTCATTAATTTAACAATCTAGTGG 57.815 33.333 0.00 0.00 0.00 4.00
5510 8813 6.775088 ACATGTCGTATGTGCTTTAAAGATG 58.225 36.000 19.48 11.09 0.00 2.90
5625 8929 3.784701 AGCATGTAACTAGAGTGGTCG 57.215 47.619 0.00 0.00 0.00 4.79
5704 9008 4.881273 CACCCATAAAGGTCGATCAATGAA 59.119 41.667 0.00 0.00 38.39 2.57
5733 9037 2.107378 TGGCTGATCAAAGGGTACAACA 59.893 45.455 0.00 0.00 0.00 3.33
5790 9094 4.962362 TCACACCAGTCATGATATACACCT 59.038 41.667 0.00 0.00 0.00 4.00
5976 9283 9.722056 GATATCACACCTAAAACAAAAGCATAG 57.278 33.333 0.00 0.00 0.00 2.23
5977 9284 9.237187 TGATATCACACCTAAAACAAAAGCATA 57.763 29.630 0.00 0.00 0.00 3.14
5978 9285 8.121305 TGATATCACACCTAAAACAAAAGCAT 57.879 30.769 0.00 0.00 0.00 3.79
5979 9286 7.517614 TGATATCACACCTAAAACAAAAGCA 57.482 32.000 0.00 0.00 0.00 3.91
5980 9287 8.863049 CAATGATATCACACCTAAAACAAAAGC 58.137 33.333 7.78 0.00 0.00 3.51
6185 9492 5.998553 AGCATGAATCATCGCAATTAAGAG 58.001 37.500 15.95 0.00 0.00 2.85
6191 9498 3.252701 GGAGAAGCATGAATCATCGCAAT 59.747 43.478 15.95 7.59 0.00 3.56
6219 9529 4.689345 AGAGTACGCTTGTTTACCAATCAC 59.311 41.667 0.00 0.00 31.20 3.06
6235 9545 0.598562 ACCTGTGCTGTCAGAGTACG 59.401 55.000 3.32 0.00 40.05 3.67
6416 9726 1.253593 TGCCGAGTGTCATCTCTGCT 61.254 55.000 14.80 0.00 42.35 4.24
6420 9730 1.520342 GGCTGCCGAGTGTCATCTC 60.520 63.158 1.35 0.00 0.00 2.75
6577 9959 2.223711 CCAGCACCCACAAACTTGTTAC 60.224 50.000 0.00 0.00 39.91 2.50
6671 10053 2.038557 ACGGCACAAGATGGAGTACTTT 59.961 45.455 0.00 0.00 0.00 2.66
6711 10094 3.804036 TCAACAACCTGATTCACGAGTT 58.196 40.909 0.00 0.00 0.00 3.01
6735 10118 4.936891 AGAAAGTTGTCTTGAAATGCACC 58.063 39.130 0.00 0.00 33.79 5.01
6866 10249 2.104859 CATGTGGCAGAGCACCTCG 61.105 63.158 0.00 0.00 35.36 4.63
6871 10254 0.469705 AAAACCCATGTGGCAGAGCA 60.470 50.000 0.00 0.00 37.83 4.26
6872 10255 0.037975 CAAAACCCATGTGGCAGAGC 60.038 55.000 0.00 0.00 37.83 4.09
6873 10256 0.604578 CCAAAACCCATGTGGCAGAG 59.395 55.000 0.00 0.00 37.83 3.35
6874 10257 0.105760 ACCAAAACCCATGTGGCAGA 60.106 50.000 0.00 0.00 37.83 4.26
6875 10258 0.318120 GACCAAAACCCATGTGGCAG 59.682 55.000 0.00 0.00 37.83 4.85
6876 10259 0.397675 TGACCAAAACCCATGTGGCA 60.398 50.000 0.00 0.00 37.83 4.92
6877 10260 0.318120 CTGACCAAAACCCATGTGGC 59.682 55.000 0.00 0.00 37.83 5.01
6878 10261 1.888512 CTCTGACCAAAACCCATGTGG 59.111 52.381 0.00 0.00 41.37 4.17
6879 10262 2.862541 TCTCTGACCAAAACCCATGTG 58.137 47.619 0.00 0.00 0.00 3.21
6880 10263 3.424703 CATCTCTGACCAAAACCCATGT 58.575 45.455 0.00 0.00 0.00 3.21
6881 10264 2.165030 GCATCTCTGACCAAAACCCATG 59.835 50.000 0.00 0.00 0.00 3.66
6882 10265 2.225091 TGCATCTCTGACCAAAACCCAT 60.225 45.455 0.00 0.00 0.00 4.00
6914 10306 1.140772 GGGAGGAAGTGGGGGAAAGT 61.141 60.000 0.00 0.00 0.00 2.66
6921 10313 1.596496 ATTACCTGGGAGGAAGTGGG 58.404 55.000 0.00 0.00 37.67 4.61
7049 10463 3.525537 AGATACCAGCTTCAATGACGTG 58.474 45.455 0.00 0.00 0.00 4.49
7050 10464 3.895232 AGATACCAGCTTCAATGACGT 57.105 42.857 0.00 0.00 0.00 4.34
7099 10513 3.012518 GGCGTATAGGCTTACTCCGATA 58.987 50.000 16.39 0.00 42.90 2.92
7155 10569 0.846427 TTGGGTGGCCTTCATCTCCT 60.846 55.000 3.32 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.