Multiple sequence alignment - TraesCS3A01G348300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G348300 chr3A 100.000 3908 0 0 1 3908 597169195 597165288 0.000000e+00 7217.0
1 TraesCS3A01G348300 chr3A 91.053 190 15 2 3028 3216 597166074 597165886 5.010000e-64 255.0
2 TraesCS3A01G348300 chr3A 91.053 190 15 2 3122 3310 597166168 597165980 5.010000e-64 255.0
3 TraesCS3A01G348300 chr3A 97.656 128 3 0 646 773 686910086 686909959 1.830000e-53 220.0
4 TraesCS3A01G348300 chr3A 95.522 134 5 1 646 779 57867681 57867549 3.060000e-51 213.0
5 TraesCS3A01G348300 chr3A 83.019 106 14 3 2346 2449 597166747 597166850 4.160000e-15 93.5
6 TraesCS3A01G348300 chr3A 97.619 42 1 0 2306 2347 597166779 597166738 5.420000e-09 73.1
7 TraesCS3A01G348300 chr3A 97.619 42 1 0 2417 2458 597166890 597166849 5.420000e-09 73.1
8 TraesCS3A01G348300 chr3D 93.971 1443 63 11 971 2408 454896603 454895180 0.000000e+00 2161.0
9 TraesCS3A01G348300 chr3D 92.129 775 35 10 2457 3216 454895172 454894409 0.000000e+00 1070.0
10 TraesCS3A01G348300 chr3D 90.909 825 27 14 3122 3908 454894602 454893788 0.000000e+00 1064.0
11 TraesCS3A01G348300 chr3D 87.814 279 21 6 374 650 454897042 454896775 8.150000e-82 315.0
12 TraesCS3A01G348300 chr3D 95.152 165 6 2 193 356 454897192 454897029 3.870000e-65 259.0
13 TraesCS3A01G348300 chr3D 88.136 177 17 1 771 943 454896780 454896604 1.420000e-49 207.0
14 TraesCS3A01G348300 chr3D 85.417 192 17 8 1 181 454897364 454897173 5.150000e-44 189.0
15 TraesCS3A01G348300 chr3D 83.099 142 16 7 2271 2408 454895141 454895278 5.300000e-24 122.0
16 TraesCS3A01G348300 chr3D 91.781 73 6 0 2306 2378 454895210 454895282 6.910000e-18 102.0
17 TraesCS3A01G348300 chr3D 77.037 135 28 3 2417 2550 454895282 454895150 1.510000e-09 75.0
18 TraesCS3A01G348300 chr3D 95.652 46 2 0 2405 2450 454895198 454895243 1.510000e-09 75.0
19 TraesCS3A01G348300 chr3D 92.683 41 1 2 2410 2450 454895171 454895209 1.520000e-04 58.4
20 TraesCS3A01G348300 chr3B 93.001 1443 73 16 970 2408 597785212 597783794 0.000000e+00 2080.0
21 TraesCS3A01G348300 chr3B 92.549 1181 47 14 2463 3608 597783780 597782606 0.000000e+00 1655.0
22 TraesCS3A01G348300 chr3B 90.226 399 28 8 242 636 597785790 597785399 9.690000e-141 510.0
23 TraesCS3A01G348300 chr3B 95.339 236 11 0 3673 3908 597782584 597782349 3.690000e-100 375.0
24 TraesCS3A01G348300 chr3B 91.176 170 10 3 771 937 597785377 597785210 3.930000e-55 226.0
25 TraesCS3A01G348300 chr3B 98.551 69 1 0 2271 2339 597783755 597783823 5.300000e-24 122.0
26 TraesCS3A01G348300 chr3B 77.037 135 29 2 2417 2550 597783897 597783764 4.190000e-10 76.8
27 TraesCS3A01G348300 chr3B 75.172 145 26 8 2410 2550 597783785 597783923 4.220000e-05 60.2
28 TraesCS3A01G348300 chr2B 96.269 134 5 0 646 779 89552373 89552506 1.830000e-53 220.0
29 TraesCS3A01G348300 chr6A 96.212 132 5 0 646 777 106716472 106716603 2.360000e-52 217.0
30 TraesCS3A01G348300 chr5A 96.183 131 5 0 645 775 619719183 619719053 8.500000e-52 215.0
31 TraesCS3A01G348300 chr4A 95.522 134 6 0 646 779 513375882 513376015 8.500000e-52 215.0
32 TraesCS3A01G348300 chr4A 93.706 143 7 2 641 782 214300398 214300257 3.060000e-51 213.0
33 TraesCS3A01G348300 chr7A 96.183 131 4 1 642 772 158665225 158665096 3.060000e-51 213.0
34 TraesCS3A01G348300 chr2A 90.625 160 10 5 616 772 538689564 538689407 1.420000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G348300 chr3A 597165288 597169195 3907 True 1574.640000 7217 95.468800 1 3908 5 chr3A.!!$R3 3907
1 TraesCS3A01G348300 chr3D 454893788 454897364 3576 True 667.500000 2161 88.820625 1 3908 8 chr3D.!!$R1 3907
2 TraesCS3A01G348300 chr3B 597782349 597785790 3441 True 820.466667 2080 89.888000 242 3908 6 chr3B.!!$R1 3666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
953 976 0.040067 AGCGCCTCTTTTTCTTTGCG 60.040 50.0 2.29 0.0 44.38 4.85 F
954 977 0.040425 GCGCCTCTTTTTCTTTGCGA 60.040 50.0 5.83 0.0 44.32 5.10 F
1075 1098 0.534412 ACTCCAGGAAGATGTGAGCG 59.466 55.0 0.00 0.0 0.00 5.03 F
1626 1652 0.545548 AGGTGGACCTCTTCAGGGAC 60.546 60.0 0.00 0.0 44.77 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 1822 0.320050 TACCTTGACATGAGCACGCA 59.680 50.000 0.00 0.0 0.00 5.24 R
2158 2184 1.153349 GCCCTGAAGGATCACCGTC 60.153 63.158 0.00 0.0 43.25 4.79 R
2689 2718 1.734465 GGCAAAGTCGATGAGAACTGG 59.266 52.381 0.00 0.0 0.00 4.00 R
3403 3546 1.661463 TGGGACTTGAGAGCTCCATT 58.339 50.000 10.93 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.202141 TGAAAACTGAACCAATCAAGCCAG 60.202 41.667 0.00 0.00 37.67 4.85
109 112 2.712077 GCAACGAGCGGAACATTTG 58.288 52.632 0.00 0.00 0.00 2.32
113 125 0.881118 ACGAGCGGAACATTTGCAAT 59.119 45.000 0.00 0.00 0.00 3.56
164 176 1.743252 CTTCAGGCGAGTCCCAAGC 60.743 63.158 0.00 0.00 34.51 4.01
174 186 0.400594 AGTCCCAAGCAGGTACCAAC 59.599 55.000 15.94 5.27 34.66 3.77
178 190 1.523758 CCAAGCAGGTACCAACACTC 58.476 55.000 15.94 0.00 0.00 3.51
179 191 1.523758 CAAGCAGGTACCAACACTCC 58.476 55.000 15.94 0.00 0.00 3.85
180 192 0.400594 AAGCAGGTACCAACACTCCC 59.599 55.000 15.94 0.00 0.00 4.30
181 193 1.002502 GCAGGTACCAACACTCCCC 60.003 63.158 15.94 0.00 0.00 4.81
182 194 1.489560 GCAGGTACCAACACTCCCCT 61.490 60.000 15.94 0.00 0.00 4.79
183 195 0.613777 CAGGTACCAACACTCCCCTC 59.386 60.000 15.94 0.00 0.00 4.30
184 196 0.192566 AGGTACCAACACTCCCCTCA 59.807 55.000 15.94 0.00 0.00 3.86
185 197 1.061546 GGTACCAACACTCCCCTCAA 58.938 55.000 7.15 0.00 0.00 3.02
186 198 1.422402 GGTACCAACACTCCCCTCAAA 59.578 52.381 7.15 0.00 0.00 2.69
187 199 2.158579 GGTACCAACACTCCCCTCAAAA 60.159 50.000 7.15 0.00 0.00 2.44
188 200 2.838637 ACCAACACTCCCCTCAAAAA 57.161 45.000 0.00 0.00 0.00 1.94
240 252 0.741221 GATTTCGCCCGCTTCTGACT 60.741 55.000 0.00 0.00 0.00 3.41
249 261 1.293498 GCTTCTGACTTCTGCCGGA 59.707 57.895 5.05 0.00 0.00 5.14
290 302 5.092781 GTCGCCATCACGTATCAAAAATTT 58.907 37.500 0.00 0.00 0.00 1.82
338 350 3.723348 GGCCCGTGAACTTGCGTC 61.723 66.667 0.00 0.00 0.00 5.19
343 355 0.655733 CCGTGAACTTGCGTCTTGTT 59.344 50.000 0.00 0.00 0.00 2.83
354 366 1.452110 CGTCTTGTTCCCATGCATGA 58.548 50.000 28.31 6.08 0.00 3.07
363 375 2.417257 CCATGCATGACCAACCCCG 61.417 63.158 28.31 3.80 0.00 5.73
409 422 1.423845 CACTCGTATGCCGCCAAAC 59.576 57.895 0.00 0.00 36.19 2.93
437 451 0.460987 CTCCCATCAGAAGTCGGCAC 60.461 60.000 0.00 0.00 0.00 5.01
444 458 2.167662 TCAGAAGTCGGCACACAGATA 58.832 47.619 0.00 0.00 0.00 1.98
474 488 1.008538 CGCAGCAAAACACTGGTCC 60.009 57.895 0.00 0.00 35.62 4.46
483 497 1.741327 AACACTGGTCCGCACGTACT 61.741 55.000 0.00 0.00 0.00 2.73
484 498 0.890542 ACACTGGTCCGCACGTACTA 60.891 55.000 0.00 0.00 0.00 1.82
485 499 0.455633 CACTGGTCCGCACGTACTAC 60.456 60.000 0.00 0.00 0.00 2.73
558 572 2.490509 TGGATCAGCAGAACATTTGCAG 59.509 45.455 0.00 0.00 43.92 4.41
559 573 2.527100 GATCAGCAGAACATTTGCAGC 58.473 47.619 0.00 0.00 43.92 5.25
575 589 2.426738 TGCAGCCCGATTAAAAGATTGG 59.573 45.455 0.00 0.00 0.00 3.16
607 621 2.597305 CACATTTCGTGTACGCTCCTAC 59.403 50.000 4.67 0.00 39.62 3.18
642 658 1.837439 TCCTCGGGAGCAATGTTGTAT 59.163 47.619 0.00 0.00 0.00 2.29
643 659 1.942657 CCTCGGGAGCAATGTTGTATG 59.057 52.381 0.00 0.00 0.00 2.39
644 660 2.632377 CTCGGGAGCAATGTTGTATGT 58.368 47.619 0.00 0.00 0.00 2.29
645 661 3.009723 CTCGGGAGCAATGTTGTATGTT 58.990 45.455 0.00 0.00 0.00 2.71
647 663 3.936453 TCGGGAGCAATGTTGTATGTTAC 59.064 43.478 0.00 0.00 0.00 2.50
650 666 4.335594 GGGAGCAATGTTGTATGTTACTCC 59.664 45.833 0.00 0.00 40.35 3.85
651 667 4.335594 GGAGCAATGTTGTATGTTACTCCC 59.664 45.833 0.00 0.00 36.08 4.30
652 668 5.179452 AGCAATGTTGTATGTTACTCCCT 57.821 39.130 0.00 0.00 0.00 4.20
653 669 5.186198 AGCAATGTTGTATGTTACTCCCTC 58.814 41.667 0.00 0.00 0.00 4.30
654 670 4.335594 GCAATGTTGTATGTTACTCCCTCC 59.664 45.833 0.00 0.00 0.00 4.30
657 673 3.579586 TGTTGTATGTTACTCCCTCCGTT 59.420 43.478 0.00 0.00 0.00 4.44
658 674 4.179298 GTTGTATGTTACTCCCTCCGTTC 58.821 47.826 0.00 0.00 0.00 3.95
659 675 3.705051 TGTATGTTACTCCCTCCGTTCT 58.295 45.455 0.00 0.00 0.00 3.01
660 676 3.446161 TGTATGTTACTCCCTCCGTTCTG 59.554 47.826 0.00 0.00 0.00 3.02
661 677 2.297698 TGTTACTCCCTCCGTTCTGA 57.702 50.000 0.00 0.00 0.00 3.27
662 678 2.600790 TGTTACTCCCTCCGTTCTGAA 58.399 47.619 0.00 0.00 0.00 3.02
663 679 3.170717 TGTTACTCCCTCCGTTCTGAAT 58.829 45.455 0.00 0.00 0.00 2.57
664 680 3.581332 TGTTACTCCCTCCGTTCTGAATT 59.419 43.478 0.00 0.00 0.00 2.17
665 681 4.773674 TGTTACTCCCTCCGTTCTGAATTA 59.226 41.667 0.00 0.00 0.00 1.40
666 682 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
667 683 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
668 684 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
669 685 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
670 686 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
671 687 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
672 688 4.322801 CCCTCCGTTCTGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
673 689 5.238583 CCTCCGTTCTGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
674 690 5.120830 CCTCCGTTCTGAATTACTTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
675 691 4.994852 TCCGTTCTGAATTACTTGTCTTGG 59.005 41.667 0.00 0.00 0.00 3.61
676 692 4.994852 CCGTTCTGAATTACTTGTCTTGGA 59.005 41.667 0.00 0.00 0.00 3.53
677 693 5.643777 CCGTTCTGAATTACTTGTCTTGGAT 59.356 40.000 0.00 0.00 0.00 3.41
678 694 6.149474 CCGTTCTGAATTACTTGTCTTGGATT 59.851 38.462 0.00 0.00 0.00 3.01
679 695 7.308589 CCGTTCTGAATTACTTGTCTTGGATTT 60.309 37.037 0.00 0.00 0.00 2.17
680 696 7.535258 CGTTCTGAATTACTTGTCTTGGATTTG 59.465 37.037 0.00 0.00 0.00 2.32
681 697 8.352942 GTTCTGAATTACTTGTCTTGGATTTGT 58.647 33.333 0.00 0.00 0.00 2.83
682 698 8.099364 TCTGAATTACTTGTCTTGGATTTGTC 57.901 34.615 0.00 0.00 0.00 3.18
683 699 7.939039 TCTGAATTACTTGTCTTGGATTTGTCT 59.061 33.333 0.00 0.00 0.00 3.41
684 700 9.219603 CTGAATTACTTGTCTTGGATTTGTCTA 57.780 33.333 0.00 0.00 0.00 2.59
685 701 9.567776 TGAATTACTTGTCTTGGATTTGTCTAA 57.432 29.630 0.00 0.00 0.00 2.10
690 706 8.336801 ACTTGTCTTGGATTTGTCTAAATACC 57.663 34.615 0.00 0.00 36.46 2.73
691 707 6.978343 TGTCTTGGATTTGTCTAAATACCG 57.022 37.500 0.00 0.00 36.46 4.02
692 708 6.703319 TGTCTTGGATTTGTCTAAATACCGA 58.297 36.000 0.00 0.00 36.46 4.69
693 709 7.335627 TGTCTTGGATTTGTCTAAATACCGAT 58.664 34.615 0.00 0.00 36.46 4.18
694 710 7.279981 TGTCTTGGATTTGTCTAAATACCGATG 59.720 37.037 0.00 0.00 36.46 3.84
695 711 7.280205 GTCTTGGATTTGTCTAAATACCGATGT 59.720 37.037 0.00 0.00 36.46 3.06
696 712 8.479689 TCTTGGATTTGTCTAAATACCGATGTA 58.520 33.333 0.00 0.00 36.46 2.29
697 713 9.273016 CTTGGATTTGTCTAAATACCGATGTAT 57.727 33.333 0.00 0.00 36.46 2.29
698 714 8.827177 TGGATTTGTCTAAATACCGATGTATC 57.173 34.615 0.00 0.00 36.46 2.24
699 715 8.647796 TGGATTTGTCTAAATACCGATGTATCT 58.352 33.333 0.00 0.00 36.46 1.98
715 731 9.130312 CCGATGTATCTAGACTTATTTTAGTGC 57.870 37.037 0.00 0.00 0.00 4.40
716 732 9.900710 CGATGTATCTAGACTTATTTTAGTGCT 57.099 33.333 0.00 0.00 0.00 4.40
726 742 8.862085 AGACTTATTTTAGTGCTAGATACCTCC 58.138 37.037 0.00 0.00 0.00 4.30
727 743 7.659186 ACTTATTTTAGTGCTAGATACCTCCG 58.341 38.462 0.00 0.00 0.00 4.63
728 744 7.287235 ACTTATTTTAGTGCTAGATACCTCCGT 59.713 37.037 0.00 0.00 0.00 4.69
729 745 8.696043 TTATTTTAGTGCTAGATACCTCCGTA 57.304 34.615 0.00 0.00 0.00 4.02
730 746 7.778185 ATTTTAGTGCTAGATACCTCCGTAT 57.222 36.000 0.00 0.00 37.92 3.06
746 762 8.302515 ACCTCCGTATCTAAACAAATCTAAGA 57.697 34.615 0.00 0.00 0.00 2.10
747 763 8.196103 ACCTCCGTATCTAAACAAATCTAAGAC 58.804 37.037 0.00 0.00 0.00 3.01
748 764 8.195436 CCTCCGTATCTAAACAAATCTAAGACA 58.805 37.037 0.00 0.00 0.00 3.41
749 765 9.582431 CTCCGTATCTAAACAAATCTAAGACAA 57.418 33.333 0.00 0.00 0.00 3.18
750 766 9.582431 TCCGTATCTAAACAAATCTAAGACAAG 57.418 33.333 0.00 0.00 0.00 3.16
751 767 9.367444 CCGTATCTAAACAAATCTAAGACAAGT 57.633 33.333 0.00 0.00 0.00 3.16
759 775 8.842358 AACAAATCTAAGACAAGTAATTCGGA 57.158 30.769 0.00 0.00 0.00 4.55
760 776 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
761 777 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
785 801 1.065126 GGGAGTAGCTCTGTGCCAAAT 60.065 52.381 0.00 0.00 44.23 2.32
797 813 1.416030 GTGCCAAATTCCCCACTTTGT 59.584 47.619 0.00 0.00 31.83 2.83
836 852 2.883730 CGTCGCATACACCCCACG 60.884 66.667 0.00 0.00 0.00 4.94
868 884 1.089920 CAAAGTCTCCAATCCTGCCG 58.910 55.000 0.00 0.00 0.00 5.69
877 893 1.339610 CCAATCCTGCCGAAAACAACA 59.660 47.619 0.00 0.00 0.00 3.33
933 956 7.449704 CCCAGAAAGATAAGGATTTCCATTAGG 59.550 40.741 0.00 0.00 36.31 2.69
937 960 5.799213 AGATAAGGATTTCCATTAGGAGCG 58.201 41.667 0.00 0.00 46.74 5.03
943 966 1.204146 TTCCATTAGGAGCGCCTCTT 58.796 50.000 14.14 0.00 46.74 2.85
944 967 1.204146 TCCATTAGGAGCGCCTCTTT 58.796 50.000 14.14 0.00 45.54 2.52
945 968 1.559682 TCCATTAGGAGCGCCTCTTTT 59.440 47.619 14.14 0.00 45.54 2.27
946 969 2.026262 TCCATTAGGAGCGCCTCTTTTT 60.026 45.455 14.14 0.00 45.54 1.94
947 970 2.356069 CCATTAGGAGCGCCTCTTTTTC 59.644 50.000 14.14 0.00 45.54 2.29
948 971 3.274288 CATTAGGAGCGCCTCTTTTTCT 58.726 45.455 14.14 0.00 45.54 2.52
949 972 3.418684 TTAGGAGCGCCTCTTTTTCTT 57.581 42.857 14.14 0.00 45.54 2.52
950 973 2.278332 AGGAGCGCCTCTTTTTCTTT 57.722 45.000 1.77 0.00 42.19 2.52
951 974 1.882623 AGGAGCGCCTCTTTTTCTTTG 59.117 47.619 1.77 0.00 42.19 2.77
952 975 1.667177 GGAGCGCCTCTTTTTCTTTGC 60.667 52.381 2.29 0.00 0.00 3.68
953 976 0.040067 AGCGCCTCTTTTTCTTTGCG 60.040 50.000 2.29 0.00 44.38 4.85
954 977 0.040425 GCGCCTCTTTTTCTTTGCGA 60.040 50.000 5.83 0.00 44.32 5.10
955 978 1.599419 GCGCCTCTTTTTCTTTGCGAA 60.599 47.619 5.83 0.00 44.32 4.70
956 979 2.726633 CGCCTCTTTTTCTTTGCGAAA 58.273 42.857 0.00 0.00 44.32 3.46
957 980 3.112580 CGCCTCTTTTTCTTTGCGAAAA 58.887 40.909 0.00 0.00 46.81 2.29
965 988 4.358494 TTTCTTTGCGAAAAACTTCCGA 57.642 36.364 0.00 0.00 38.62 4.55
966 989 4.561735 TTCTTTGCGAAAAACTTCCGAT 57.438 36.364 0.00 0.00 0.00 4.18
967 990 4.141855 TCTTTGCGAAAAACTTCCGATC 57.858 40.909 0.00 0.00 0.00 3.69
968 991 2.587612 TTGCGAAAAACTTCCGATCG 57.412 45.000 8.51 8.51 36.64 3.69
969 992 1.785768 TGCGAAAAACTTCCGATCGA 58.214 45.000 18.66 0.00 35.65 3.59
1069 1092 8.354711 TGCTACTATATTACTCCAGGAAGATG 57.645 38.462 0.00 0.00 0.00 2.90
1072 1095 9.521841 CTACTATATTACTCCAGGAAGATGTGA 57.478 37.037 0.00 0.00 0.00 3.58
1073 1096 8.415950 ACTATATTACTCCAGGAAGATGTGAG 57.584 38.462 0.00 0.00 0.00 3.51
1074 1097 3.895232 TTACTCCAGGAAGATGTGAGC 57.105 47.619 0.00 0.00 0.00 4.26
1075 1098 0.534412 ACTCCAGGAAGATGTGAGCG 59.466 55.000 0.00 0.00 0.00 5.03
1076 1099 0.820226 CTCCAGGAAGATGTGAGCGA 59.180 55.000 0.00 0.00 0.00 4.93
1077 1100 0.820226 TCCAGGAAGATGTGAGCGAG 59.180 55.000 0.00 0.00 0.00 5.03
1078 1101 0.534412 CCAGGAAGATGTGAGCGAGT 59.466 55.000 0.00 0.00 0.00 4.18
1079 1102 1.470632 CCAGGAAGATGTGAGCGAGTC 60.471 57.143 0.00 0.00 0.00 3.36
1080 1103 1.203287 CAGGAAGATGTGAGCGAGTCA 59.797 52.381 0.00 0.00 0.00 3.41
1093 1116 1.418373 CGAGTCACAACGAATCAGCA 58.582 50.000 0.00 0.00 38.68 4.41
1115 1138 6.317391 AGCAGGATCTTTTGCAGAGTTATTAC 59.683 38.462 15.97 0.00 42.67 1.89
1119 1142 6.599638 GGATCTTTTGCAGAGTTATTACCAGT 59.400 38.462 0.00 0.00 33.87 4.00
1129 1152 6.980978 CAGAGTTATTACCAGTCATTCACGAT 59.019 38.462 0.00 0.00 0.00 3.73
1130 1153 6.980978 AGAGTTATTACCAGTCATTCACGATG 59.019 38.462 0.00 0.00 37.08 3.84
1245 1271 2.762043 GCGCTCCTCCTCCTCCTT 60.762 66.667 0.00 0.00 0.00 3.36
1248 1274 1.688884 GCTCCTCCTCCTCCTTGCT 60.689 63.158 0.00 0.00 0.00 3.91
1332 1358 0.802607 GCGACTCCATCTTCGACACC 60.803 60.000 0.00 0.00 37.43 4.16
1440 1466 3.078196 TCCAATGGCCGGCTCGTA 61.078 61.111 28.56 11.10 0.00 3.43
1626 1652 0.545548 AGGTGGACCTCTTCAGGGAC 60.546 60.000 0.00 0.00 44.77 4.46
1708 1734 3.306434 CAGCTCTCTGATGTTCATCAACG 59.694 47.826 14.96 9.67 42.95 4.10
1741 1767 7.065803 CCAATGATTTCACTCATTACTACCGTT 59.934 37.037 0.00 0.00 42.52 4.44
1826 1852 6.350110 GCTCATGTCAAGGTAAAATTAGGCAA 60.350 38.462 0.00 0.00 0.00 4.52
1835 1861 5.656859 AGGTAAAATTAGGCAATTCTGGGTC 59.343 40.000 0.00 0.00 33.09 4.46
1837 1863 6.154534 GGTAAAATTAGGCAATTCTGGGTCTT 59.845 38.462 0.00 0.00 33.09 3.01
1839 1865 5.665916 AATTAGGCAATTCTGGGTCTTTG 57.334 39.130 0.00 0.00 27.60 2.77
1852 1878 1.807142 GGTCTTTGTCTACCAAGCTGC 59.193 52.381 0.00 0.00 35.73 5.25
1855 1881 3.187432 GTCTTTGTCTACCAAGCTGCTTC 59.813 47.826 12.82 0.50 33.75 3.86
1863 1889 6.106673 GTCTACCAAGCTGCTTCTGTTATAA 58.893 40.000 12.82 0.00 0.00 0.98
1864 1890 6.256757 GTCTACCAAGCTGCTTCTGTTATAAG 59.743 42.308 12.82 7.22 0.00 1.73
1865 1891 4.911390 ACCAAGCTGCTTCTGTTATAAGT 58.089 39.130 12.82 0.00 0.00 2.24
2041 2067 1.298014 CCTTGAGAGGGGCTGTGTC 59.702 63.158 0.00 0.00 39.55 3.67
2143 2169 6.273071 AGGAAGCAAAATTGTGTACTTGAAC 58.727 36.000 0.00 0.00 0.00 3.18
2158 2184 1.144969 TGAACGCCTACGAAGCTTTG 58.855 50.000 12.41 12.41 43.93 2.77
2381 2410 8.470805 TGAATAAAAACACCAAGAAAGCAGTAA 58.529 29.630 0.00 0.00 0.00 2.24
2408 2437 8.188139 TCAGTTCTGAATAAAAACACCAAGAAC 58.812 33.333 0.00 0.00 34.10 3.01
2409 2438 8.190784 CAGTTCTGAATAAAAACACCAAGAACT 58.809 33.333 8.52 8.52 41.63 3.01
2410 2439 9.403583 AGTTCTGAATAAAAACACCAAGAACTA 57.596 29.630 11.82 0.00 39.93 2.24
2413 2442 9.403583 TCTGAATAAAAACACCAAGAACTAACT 57.596 29.630 0.00 0.00 0.00 2.24
2418 2447 6.373186 AAAACACCAAGAACTAACTACTGC 57.627 37.500 0.00 0.00 0.00 4.40
2419 2448 4.957684 ACACCAAGAACTAACTACTGCT 57.042 40.909 0.00 0.00 0.00 4.24
2420 2449 5.291905 ACACCAAGAACTAACTACTGCTT 57.708 39.130 0.00 0.00 0.00 3.91
2421 2450 5.681639 ACACCAAGAACTAACTACTGCTTT 58.318 37.500 0.00 0.00 0.00 3.51
2422 2451 5.758784 ACACCAAGAACTAACTACTGCTTTC 59.241 40.000 0.00 0.00 0.00 2.62
2423 2452 5.992217 CACCAAGAACTAACTACTGCTTTCT 59.008 40.000 0.00 0.00 0.00 2.52
2424 2453 6.483640 CACCAAGAACTAACTACTGCTTTCTT 59.516 38.462 0.00 0.00 34.41 2.52
2425 2454 6.483640 ACCAAGAACTAACTACTGCTTTCTTG 59.516 38.462 12.76 12.76 44.88 3.02
2426 2455 6.892691 CAAGAACTAACTACTGCTTTCTTGG 58.107 40.000 12.13 0.00 43.01 3.61
2427 2456 6.176014 AGAACTAACTACTGCTTTCTTGGT 57.824 37.500 0.00 0.00 0.00 3.67
2428 2457 5.992217 AGAACTAACTACTGCTTTCTTGGTG 59.008 40.000 0.00 0.00 0.00 4.17
2429 2458 5.291905 ACTAACTACTGCTTTCTTGGTGT 57.708 39.130 0.00 0.00 0.00 4.16
2430 2459 5.681639 ACTAACTACTGCTTTCTTGGTGTT 58.318 37.500 0.00 0.00 0.00 3.32
2431 2460 6.120220 ACTAACTACTGCTTTCTTGGTGTTT 58.880 36.000 0.00 0.00 0.00 2.83
2432 2461 5.914898 AACTACTGCTTTCTTGGTGTTTT 57.085 34.783 0.00 0.00 0.00 2.43
2433 2462 5.914898 ACTACTGCTTTCTTGGTGTTTTT 57.085 34.783 0.00 0.00 0.00 1.94
2434 2463 7.399245 AACTACTGCTTTCTTGGTGTTTTTA 57.601 32.000 0.00 0.00 0.00 1.52
2435 2464 7.582667 ACTACTGCTTTCTTGGTGTTTTTAT 57.417 32.000 0.00 0.00 0.00 1.40
2436 2465 8.007405 ACTACTGCTTTCTTGGTGTTTTTATT 57.993 30.769 0.00 0.00 0.00 1.40
2437 2466 8.135529 ACTACTGCTTTCTTGGTGTTTTTATTC 58.864 33.333 0.00 0.00 0.00 1.75
2438 2467 6.872920 ACTGCTTTCTTGGTGTTTTTATTCA 58.127 32.000 0.00 0.00 0.00 2.57
2439 2468 6.980397 ACTGCTTTCTTGGTGTTTTTATTCAG 59.020 34.615 0.00 0.00 0.00 3.02
2440 2469 7.106439 TGCTTTCTTGGTGTTTTTATTCAGA 57.894 32.000 0.00 0.00 0.00 3.27
2441 2470 7.551585 TGCTTTCTTGGTGTTTTTATTCAGAA 58.448 30.769 0.00 0.00 0.00 3.02
2442 2471 7.491048 TGCTTTCTTGGTGTTTTTATTCAGAAC 59.509 33.333 0.00 0.00 0.00 3.01
2443 2472 7.706607 GCTTTCTTGGTGTTTTTATTCAGAACT 59.293 33.333 0.00 0.00 0.00 3.01
2447 2476 9.403583 TCTTGGTGTTTTTATTCAGAACTAACT 57.596 29.630 0.00 0.00 0.00 2.24
2450 2479 9.616156 TGGTGTTTTTATTCAGAACTAACTACA 57.384 29.630 0.00 0.00 0.00 2.74
2451 2480 9.874215 GGTGTTTTTATTCAGAACTAACTACAC 57.126 33.333 0.00 0.00 0.00 2.90
2594 2623 4.459337 GGCCATGTACAACTAGAAGCTTTT 59.541 41.667 0.00 0.00 0.00 2.27
2650 2679 5.180117 GCAGAAAGCAGAGTTATCAGTTTGA 59.820 40.000 0.00 0.00 44.79 2.69
2663 2692 9.778741 AGTTATCAGTTTGAGTTATTCTTGTCA 57.221 29.630 0.00 0.00 0.00 3.58
2670 2699 6.428083 TTGAGTTATTCTTGTCACCCTACA 57.572 37.500 0.00 0.00 0.00 2.74
2673 2702 5.186198 AGTTATTCTTGTCACCCTACATGC 58.814 41.667 0.00 0.00 0.00 4.06
2689 2718 9.338622 ACCCTACATGCTTTCTTGTAATTATAC 57.661 33.333 0.00 0.00 33.97 1.47
2703 2732 8.867112 TTGTAATTATACCAGTTCTCATCGAC 57.133 34.615 0.00 0.00 0.00 4.20
2714 2743 3.548745 TCTCATCGACTTTGCCATGAT 57.451 42.857 0.00 0.00 0.00 2.45
2810 2839 0.475906 ACCCCTATCTGCAGGAATGC 59.524 55.000 15.13 0.00 38.00 3.56
2978 3007 2.981400 AACCTAATGCGTTTGGTTCG 57.019 45.000 25.77 2.79 46.03 3.95
3071 3195 9.208022 TGTTATACACAATATGATAAGCTCAGC 57.792 33.333 0.00 0.00 32.12 4.26
3072 3196 9.208022 GTTATACACAATATGATAAGCTCAGCA 57.792 33.333 0.00 0.00 37.28 4.41
3073 3197 9.948964 TTATACACAATATGATAAGCTCAGCAT 57.051 29.630 0.00 0.00 37.28 3.79
3074 3198 8.859236 ATACACAATATGATAAGCTCAGCATT 57.141 30.769 0.00 0.00 37.28 3.56
3075 3199 7.199541 ACACAATATGATAAGCTCAGCATTC 57.800 36.000 0.00 0.00 37.28 2.67
3076 3200 6.996879 ACACAATATGATAAGCTCAGCATTCT 59.003 34.615 0.00 0.00 37.28 2.40
3077 3201 7.172875 ACACAATATGATAAGCTCAGCATTCTC 59.827 37.037 0.00 0.00 37.28 2.87
3078 3202 7.172703 CACAATATGATAAGCTCAGCATTCTCA 59.827 37.037 0.00 0.00 37.28 3.27
3079 3203 7.388224 ACAATATGATAAGCTCAGCATTCTCAG 59.612 37.037 0.00 0.00 37.28 3.35
3080 3204 5.548181 ATGATAAGCTCAGCATTCTCAGA 57.452 39.130 0.00 0.00 37.28 3.27
3081 3205 5.349061 TGATAAGCTCAGCATTCTCAGAA 57.651 39.130 0.00 0.00 0.00 3.02
3082 3206 5.737860 TGATAAGCTCAGCATTCTCAGAAA 58.262 37.500 0.00 0.00 0.00 2.52
3083 3207 6.354938 TGATAAGCTCAGCATTCTCAGAAAT 58.645 36.000 0.00 0.00 0.00 2.17
3084 3208 6.827251 TGATAAGCTCAGCATTCTCAGAAATT 59.173 34.615 0.00 0.00 0.00 1.82
3085 3209 7.989170 TGATAAGCTCAGCATTCTCAGAAATTA 59.011 33.333 0.00 0.00 0.00 1.40
3086 3210 8.743085 ATAAGCTCAGCATTCTCAGAAATTAA 57.257 30.769 0.00 0.00 0.00 1.40
3087 3211 7.642082 AAGCTCAGCATTCTCAGAAATTAAT 57.358 32.000 0.00 0.00 0.00 1.40
3088 3212 7.642082 AGCTCAGCATTCTCAGAAATTAATT 57.358 32.000 0.00 0.00 0.00 1.40
3089 3213 8.064336 AGCTCAGCATTCTCAGAAATTAATTT 57.936 30.769 13.24 13.24 0.00 1.82
3090 3214 9.182214 AGCTCAGCATTCTCAGAAATTAATTTA 57.818 29.630 13.34 0.00 0.00 1.40
3091 3215 9.793252 GCTCAGCATTCTCAGAAATTAATTTAA 57.207 29.630 13.34 4.69 0.00 1.52
3116 3240 7.157347 AGAAAGGAAATCAAGAAATCAAAGGC 58.843 34.615 0.00 0.00 0.00 4.35
3117 3241 6.423776 AAGGAAATCAAGAAATCAAAGGCA 57.576 33.333 0.00 0.00 0.00 4.75
3118 3242 6.616237 AGGAAATCAAGAAATCAAAGGCAT 57.384 33.333 0.00 0.00 0.00 4.40
3119 3243 7.722949 AGGAAATCAAGAAATCAAAGGCATA 57.277 32.000 0.00 0.00 0.00 3.14
3120 3244 8.137745 AGGAAATCAAGAAATCAAAGGCATAA 57.862 30.769 0.00 0.00 0.00 1.90
3121 3245 8.037166 AGGAAATCAAGAAATCAAAGGCATAAC 58.963 33.333 0.00 0.00 0.00 1.89
3122 3246 7.818930 GGAAATCAAGAAATCAAAGGCATAACA 59.181 33.333 0.00 0.00 0.00 2.41
3123 3247 9.374838 GAAATCAAGAAATCAAAGGCATAACAT 57.625 29.630 0.00 0.00 0.00 2.71
3124 3248 8.712285 AATCAAGAAATCAAAGGCATAACATG 57.288 30.769 0.00 0.00 0.00 3.21
3125 3249 7.230849 TCAAGAAATCAAAGGCATAACATGT 57.769 32.000 0.00 0.00 0.00 3.21
3126 3250 7.092079 TCAAGAAATCAAAGGCATAACATGTG 58.908 34.615 0.00 0.00 0.00 3.21
3127 3251 6.594788 AGAAATCAAAGGCATAACATGTGT 57.405 33.333 0.00 0.00 0.00 3.72
3128 3252 6.996509 AGAAATCAAAGGCATAACATGTGTT 58.003 32.000 0.00 3.64 41.73 3.32
3129 3253 7.444299 AGAAATCAAAGGCATAACATGTGTTT 58.556 30.769 0.00 0.00 39.31 2.83
3130 3254 7.599998 AGAAATCAAAGGCATAACATGTGTTTC 59.400 33.333 0.00 0.00 39.31 2.78
3131 3255 4.793071 TCAAAGGCATAACATGTGTTTCG 58.207 39.130 0.00 0.00 39.31 3.46
3132 3256 4.277174 TCAAAGGCATAACATGTGTTTCGT 59.723 37.500 0.00 0.00 39.31 3.85
3133 3257 4.846779 AAGGCATAACATGTGTTTCGTT 57.153 36.364 0.00 0.00 39.31 3.85
3134 3258 4.846779 AGGCATAACATGTGTTTCGTTT 57.153 36.364 0.00 0.00 39.31 3.60
3135 3259 4.545610 AGGCATAACATGTGTTTCGTTTG 58.454 39.130 0.00 0.00 39.31 2.93
3136 3260 4.037446 AGGCATAACATGTGTTTCGTTTGT 59.963 37.500 0.00 0.00 39.31 2.83
3137 3261 4.742659 GGCATAACATGTGTTTCGTTTGTT 59.257 37.500 0.00 0.00 39.31 2.83
3138 3262 5.915758 GGCATAACATGTGTTTCGTTTGTTA 59.084 36.000 0.00 0.00 39.31 2.41
3139 3263 6.584563 GGCATAACATGTGTTTCGTTTGTTAT 59.415 34.615 0.00 0.00 41.65 1.89
3141 3265 8.500837 CATAACATGTGTTTCGTTTGTTATGT 57.499 30.769 18.86 0.00 46.34 2.29
3142 3266 8.963130 CATAACATGTGTTTCGTTTGTTATGTT 58.037 29.630 18.86 0.00 46.34 2.71
3146 3270 9.601971 ACATGTGTTTCGTTTGTTATGTTATAC 57.398 29.630 0.00 0.00 0.00 1.47
3147 3271 9.600646 CATGTGTTTCGTTTGTTATGTTATACA 57.399 29.630 0.00 0.00 0.00 2.29
3148 3272 8.990722 TGTGTTTCGTTTGTTATGTTATACAC 57.009 30.769 0.00 0.00 33.52 2.90
3149 3273 8.610035 TGTGTTTCGTTTGTTATGTTATACACA 58.390 29.630 0.00 0.00 38.74 3.72
3150 3274 9.435802 GTGTTTCGTTTGTTATGTTATACACAA 57.564 29.630 0.00 0.00 39.50 3.33
3190 3314 9.793252 GCATTCTCAGCAATTAATTAAGAAAGA 57.207 29.630 0.00 0.00 0.00 2.52
3278 3415 7.866393 GCTCAGCATTCTCAGCAATTAATTTAT 59.134 33.333 0.00 0.00 0.00 1.40
3312 3449 5.606348 AAAAAGTCAAAGGCATAACACCA 57.394 34.783 0.00 0.00 0.00 4.17
3318 3455 4.398988 GTCAAAGGCATAACACCATGATCA 59.601 41.667 0.00 0.00 30.89 2.92
3326 3463 5.532406 GCATAACACCATGATCAGGTTATGT 59.468 40.000 29.16 19.77 46.45 2.29
3403 3546 9.942850 TCAAATAGATCTGTAACTTGTGAATGA 57.057 29.630 5.18 0.00 0.00 2.57
3604 3776 3.258372 TCTTCACCTACTGTGGCACTAAG 59.742 47.826 19.83 11.28 45.48 2.18
3722 3894 3.793492 CAGCATATGTACACACAGACGAG 59.207 47.826 0.00 0.00 38.30 4.18
3736 3911 6.035005 CACACAGACGAGGTATTCAGTAAATG 59.965 42.308 0.00 0.00 0.00 2.32
3767 3943 2.312722 TTGTCGAAGGGTCAAAACGA 57.687 45.000 0.00 0.00 0.00 3.85
3786 3962 5.000012 ACGAACTTACTTCAGGATAGCAG 58.000 43.478 0.00 0.00 0.00 4.24
3811 3987 9.066892 AGCATTCAACAGTTTAATGAAGAGTAA 57.933 29.630 20.07 0.00 36.59 2.24
3862 4038 4.103153 AGAAGGAACACCAGTCATTCAAGA 59.897 41.667 2.21 0.00 0.00 3.02
3905 4081 2.226330 ACAGCGCAAAATTGTACTCCA 58.774 42.857 11.47 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 5.067273 TGATTGGTTCAGTTTTCATACGGT 58.933 37.500 0.00 0.00 0.00 4.83
98 101 2.652548 CGGATTGCAAATGTTCCGC 58.347 52.632 22.26 0.00 43.91 5.54
102 105 4.142182 CCCAACTATCGGATTGCAAATGTT 60.142 41.667 1.71 0.00 0.00 2.71
104 107 3.796504 GCCCAACTATCGGATTGCAAATG 60.797 47.826 1.71 0.00 0.00 2.32
105 108 2.362077 GCCCAACTATCGGATTGCAAAT 59.638 45.455 1.71 0.00 0.00 2.32
106 109 1.748493 GCCCAACTATCGGATTGCAAA 59.252 47.619 1.71 0.00 0.00 3.68
107 110 1.388547 GCCCAACTATCGGATTGCAA 58.611 50.000 0.00 0.00 0.00 4.08
108 111 0.465460 GGCCCAACTATCGGATTGCA 60.465 55.000 0.00 0.00 0.00 4.08
109 112 1.507141 CGGCCCAACTATCGGATTGC 61.507 60.000 0.00 0.00 0.00 3.56
113 125 3.857038 GCCGGCCCAACTATCGGA 61.857 66.667 18.11 0.00 44.69 4.55
133 145 1.021390 CCTGAAGCGCTTCCGTCAAT 61.021 55.000 39.25 10.90 38.77 2.57
136 148 3.491652 GCCTGAAGCGCTTCCGTC 61.492 66.667 39.25 24.75 38.77 4.79
157 169 0.109723 GTGTTGGTACCTGCTTGGGA 59.890 55.000 14.36 0.00 41.11 4.37
164 176 0.613777 GAGGGGAGTGTTGGTACCTG 59.386 60.000 14.36 0.00 0.00 4.00
189 201 4.823442 CGGGAGTTTTGGTACCTACTTTTT 59.177 41.667 14.36 0.00 0.00 1.94
190 202 4.392047 CGGGAGTTTTGGTACCTACTTTT 58.608 43.478 14.36 0.00 0.00 2.27
191 203 3.808265 GCGGGAGTTTTGGTACCTACTTT 60.808 47.826 14.36 0.00 0.00 2.66
192 204 2.289882 GCGGGAGTTTTGGTACCTACTT 60.290 50.000 14.36 0.00 0.00 2.24
193 205 1.277273 GCGGGAGTTTTGGTACCTACT 59.723 52.381 14.36 13.37 0.00 2.57
194 206 1.730501 GCGGGAGTTTTGGTACCTAC 58.269 55.000 14.36 8.72 0.00 3.18
195 207 0.247185 CGCGGGAGTTTTGGTACCTA 59.753 55.000 14.36 1.78 0.00 3.08
196 208 1.004200 CGCGGGAGTTTTGGTACCT 60.004 57.895 14.36 0.00 0.00 3.08
197 209 2.683859 GCGCGGGAGTTTTGGTACC 61.684 63.158 8.83 4.43 0.00 3.34
198 210 1.508808 TTGCGCGGGAGTTTTGGTAC 61.509 55.000 8.83 0.00 0.00 3.34
199 211 1.227883 TTGCGCGGGAGTTTTGGTA 60.228 52.632 8.83 0.00 0.00 3.25
200 212 2.517402 TTGCGCGGGAGTTTTGGT 60.517 55.556 8.83 0.00 0.00 3.67
201 213 2.050442 GTTGCGCGGGAGTTTTGG 60.050 61.111 8.83 0.00 0.00 3.28
202 214 1.082104 GAGTTGCGCGGGAGTTTTG 60.082 57.895 8.83 0.00 0.00 2.44
203 215 2.604174 CGAGTTGCGCGGGAGTTTT 61.604 57.895 8.83 0.00 0.00 2.43
204 216 2.781595 ATCGAGTTGCGCGGGAGTTT 62.782 55.000 8.83 0.00 40.61 2.66
205 217 2.781595 AATCGAGTTGCGCGGGAGTT 62.782 55.000 8.83 0.00 40.61 3.01
206 218 2.781595 AAATCGAGTTGCGCGGGAGT 62.782 55.000 8.83 0.00 40.61 3.85
207 219 2.025359 GAAATCGAGTTGCGCGGGAG 62.025 60.000 8.83 0.00 40.61 4.30
208 220 2.047655 AAATCGAGTTGCGCGGGA 60.048 55.556 8.83 0.00 40.61 5.14
240 252 0.389817 CAACGAGTGATCCGGCAGAA 60.390 55.000 0.00 0.00 0.00 3.02
249 261 0.531974 ACACGGCAACAACGAGTGAT 60.532 50.000 0.69 0.00 34.06 3.06
290 302 3.093814 TGTAGCGTACAATCCTTCCAGA 58.906 45.455 0.00 0.00 35.38 3.86
343 355 1.000233 GGGTTGGTCATGCATGGGA 60.000 57.895 25.97 5.34 0.00 4.37
354 366 2.122099 AGGGAAGACGGGGTTGGT 60.122 61.111 0.00 0.00 0.00 3.67
363 375 0.259938 ATGGATTGGGCAGGGAAGAC 59.740 55.000 0.00 0.00 0.00 3.01
397 409 2.361865 GGTGGGTTTGGCGGCATA 60.362 61.111 14.32 4.90 0.00 3.14
409 422 0.695462 TCTGATGGGAGGATGGTGGG 60.695 60.000 0.00 0.00 0.00 4.61
437 451 2.721797 GCGCGACAAACTGTTATCTGTG 60.722 50.000 12.10 0.00 0.00 3.66
444 458 1.987704 TTGCTGCGCGACAAACTGTT 61.988 50.000 12.10 0.00 0.00 3.16
474 488 4.640805 AAGAAACAATGTAGTACGTGCG 57.359 40.909 0.00 0.00 0.00 5.34
483 497 3.626977 CGCTGCACAAAGAAACAATGTA 58.373 40.909 0.00 0.00 0.00 2.29
484 498 2.462889 CGCTGCACAAAGAAACAATGT 58.537 42.857 0.00 0.00 0.00 2.71
485 499 1.190763 GCGCTGCACAAAGAAACAATG 59.809 47.619 0.00 0.00 0.00 2.82
513 527 6.197096 CACGAAACATTCTTGTTCTGGAAAAG 59.803 38.462 0.00 0.00 45.30 2.27
558 572 2.794631 CGTGCCAATCTTTTAATCGGGC 60.795 50.000 0.00 0.00 40.29 6.13
559 573 2.794631 GCGTGCCAATCTTTTAATCGGG 60.795 50.000 0.00 0.00 0.00 5.14
575 589 1.268113 CGAAATGTGGTTGTGCGTGC 61.268 55.000 0.00 0.00 0.00 5.34
607 621 1.646189 GAGGAGCAACTTAGCCGAAG 58.354 55.000 0.00 0.00 41.37 3.79
631 647 4.335594 GGAGGGAGTAACATACAACATTGC 59.664 45.833 0.00 0.00 0.00 3.56
636 652 3.881937 ACGGAGGGAGTAACATACAAC 57.118 47.619 0.00 0.00 0.00 3.32
637 653 4.081862 CAGAACGGAGGGAGTAACATACAA 60.082 45.833 0.00 0.00 0.00 2.41
642 658 2.297698 TCAGAACGGAGGGAGTAACA 57.702 50.000 0.00 0.00 0.00 2.41
643 659 3.889520 ATTCAGAACGGAGGGAGTAAC 57.110 47.619 0.00 0.00 0.00 2.50
644 660 5.021458 AGTAATTCAGAACGGAGGGAGTAA 58.979 41.667 0.00 0.00 0.00 2.24
645 661 4.607239 AGTAATTCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
647 663 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
650 666 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
651 667 5.120830 CCAAGACAAGTAATTCAGAACGGAG 59.879 44.000 0.00 0.00 0.00 4.63
652 668 4.994852 CCAAGACAAGTAATTCAGAACGGA 59.005 41.667 0.00 0.00 0.00 4.69
653 669 4.994852 TCCAAGACAAGTAATTCAGAACGG 59.005 41.667 0.00 0.00 0.00 4.44
654 670 6.727824 ATCCAAGACAAGTAATTCAGAACG 57.272 37.500 0.00 0.00 0.00 3.95
657 673 7.939039 AGACAAATCCAAGACAAGTAATTCAGA 59.061 33.333 0.00 0.00 0.00 3.27
658 674 8.103948 AGACAAATCCAAGACAAGTAATTCAG 57.896 34.615 0.00 0.00 0.00 3.02
659 675 9.567776 TTAGACAAATCCAAGACAAGTAATTCA 57.432 29.630 0.00 0.00 0.00 2.57
664 680 9.444600 GGTATTTAGACAAATCCAAGACAAGTA 57.555 33.333 0.00 0.00 35.88 2.24
665 681 7.119262 CGGTATTTAGACAAATCCAAGACAAGT 59.881 37.037 0.00 0.00 35.88 3.16
666 682 7.333423 TCGGTATTTAGACAAATCCAAGACAAG 59.667 37.037 0.00 0.00 35.88 3.16
667 683 7.162761 TCGGTATTTAGACAAATCCAAGACAA 58.837 34.615 0.00 0.00 35.88 3.18
668 684 6.703319 TCGGTATTTAGACAAATCCAAGACA 58.297 36.000 0.00 0.00 35.88 3.41
669 685 7.280205 ACATCGGTATTTAGACAAATCCAAGAC 59.720 37.037 0.00 0.00 35.88 3.01
670 686 7.335627 ACATCGGTATTTAGACAAATCCAAGA 58.664 34.615 0.00 0.00 35.88 3.02
671 687 7.553881 ACATCGGTATTTAGACAAATCCAAG 57.446 36.000 0.00 0.00 35.88 3.61
672 688 9.268268 GATACATCGGTATTTAGACAAATCCAA 57.732 33.333 0.00 0.00 40.28 3.53
673 689 8.647796 AGATACATCGGTATTTAGACAAATCCA 58.352 33.333 0.00 0.00 40.28 3.41
689 705 9.130312 GCACTAAAATAAGTCTAGATACATCGG 57.870 37.037 0.00 0.00 0.00 4.18
690 706 9.900710 AGCACTAAAATAAGTCTAGATACATCG 57.099 33.333 0.00 0.00 0.00 3.84
700 716 8.862085 GGAGGTATCTAGCACTAAAATAAGTCT 58.138 37.037 0.00 0.00 0.00 3.24
701 717 7.808856 CGGAGGTATCTAGCACTAAAATAAGTC 59.191 40.741 0.00 0.00 0.00 3.01
702 718 7.287235 ACGGAGGTATCTAGCACTAAAATAAGT 59.713 37.037 0.00 0.00 0.00 2.24
703 719 7.659186 ACGGAGGTATCTAGCACTAAAATAAG 58.341 38.462 0.00 0.00 0.00 1.73
704 720 7.592885 ACGGAGGTATCTAGCACTAAAATAA 57.407 36.000 0.00 0.00 0.00 1.40
705 721 8.874744 ATACGGAGGTATCTAGCACTAAAATA 57.125 34.615 0.00 0.00 34.18 1.40
706 722 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
720 736 9.412460 TCTTAGATTTGTTTAGATACGGAGGTA 57.588 33.333 0.00 0.00 0.00 3.08
721 737 8.196103 GTCTTAGATTTGTTTAGATACGGAGGT 58.804 37.037 0.00 0.00 0.00 3.85
722 738 8.195436 TGTCTTAGATTTGTTTAGATACGGAGG 58.805 37.037 0.00 0.00 0.00 4.30
723 739 9.582431 TTGTCTTAGATTTGTTTAGATACGGAG 57.418 33.333 0.00 0.00 0.00 4.63
724 740 9.582431 CTTGTCTTAGATTTGTTTAGATACGGA 57.418 33.333 0.00 0.00 0.00 4.69
725 741 9.367444 ACTTGTCTTAGATTTGTTTAGATACGG 57.633 33.333 0.00 0.00 0.00 4.02
733 749 9.280174 TCCGAATTACTTGTCTTAGATTTGTTT 57.720 29.630 0.00 0.00 0.00 2.83
734 750 8.842358 TCCGAATTACTTGTCTTAGATTTGTT 57.158 30.769 0.00 0.00 0.00 2.83
735 751 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
736 752 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
737 753 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
738 754 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
739 755 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
740 756 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
741 757 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
742 758 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
743 759 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
744 760 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
745 761 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
746 762 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
747 763 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
748 764 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
749 765 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
750 766 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
751 767 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
752 768 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
753 769 1.400737 CTACTCCCTCCGTTCCGAAT 58.599 55.000 0.00 0.00 0.00 3.34
754 770 1.318158 GCTACTCCCTCCGTTCCGAA 61.318 60.000 0.00 0.00 0.00 4.30
755 771 1.751927 GCTACTCCCTCCGTTCCGA 60.752 63.158 0.00 0.00 0.00 4.55
756 772 1.726533 GAGCTACTCCCTCCGTTCCG 61.727 65.000 0.00 0.00 0.00 4.30
757 773 0.396001 AGAGCTACTCCCTCCGTTCC 60.396 60.000 0.00 0.00 0.00 3.62
758 774 0.741915 CAGAGCTACTCCCTCCGTTC 59.258 60.000 0.00 0.00 0.00 3.95
759 775 0.039911 ACAGAGCTACTCCCTCCGTT 59.960 55.000 0.00 0.00 0.00 4.44
760 776 0.681564 CACAGAGCTACTCCCTCCGT 60.682 60.000 0.00 0.00 0.00 4.69
761 777 2.010582 GCACAGAGCTACTCCCTCCG 62.011 65.000 0.00 0.00 41.15 4.63
762 778 1.681486 GGCACAGAGCTACTCCCTCC 61.681 65.000 0.00 0.00 44.79 4.30
763 779 0.972983 TGGCACAGAGCTACTCCCTC 60.973 60.000 0.00 0.00 44.79 4.30
764 780 0.545309 TTGGCACAGAGCTACTCCCT 60.545 55.000 0.00 0.00 42.39 4.20
765 781 0.324943 TTTGGCACAGAGCTACTCCC 59.675 55.000 0.00 0.00 42.39 4.30
766 782 2.409948 ATTTGGCACAGAGCTACTCC 57.590 50.000 0.00 0.00 42.39 3.85
767 783 2.680339 GGAATTTGGCACAGAGCTACTC 59.320 50.000 0.00 0.00 42.39 2.59
768 784 2.619074 GGGAATTTGGCACAGAGCTACT 60.619 50.000 0.00 0.00 42.39 2.57
769 785 1.745653 GGGAATTTGGCACAGAGCTAC 59.254 52.381 0.00 0.00 42.39 3.58
785 801 3.458857 TGGTTACTGTACAAAGTGGGGAA 59.541 43.478 0.00 0.00 0.00 3.97
797 813 3.719924 CAGGTCGTTGTTGGTTACTGTA 58.280 45.455 0.00 0.00 0.00 2.74
820 836 1.518572 CTCGTGGGGTGTATGCGAC 60.519 63.158 0.00 0.00 0.00 5.19
836 852 4.771054 TGGAGACTTTGTAACCTACTCCTC 59.229 45.833 0.00 0.00 41.73 3.71
868 884 3.066380 GGCCCATGATGTTGTTGTTTTC 58.934 45.455 0.00 0.00 0.00 2.29
877 893 5.714863 TCCTTATTATTGGCCCATGATGTT 58.285 37.500 0.00 0.00 0.00 2.71
933 956 1.691127 GCAAAGAAAAAGAGGCGCTC 58.309 50.000 7.64 2.67 0.00 5.03
944 967 4.358494 TCGGAAGTTTTTCGCAAAGAAA 57.642 36.364 0.00 0.00 46.22 2.52
945 968 4.533222 GATCGGAAGTTTTTCGCAAAGAA 58.467 39.130 0.00 0.00 37.01 2.52
946 969 3.363575 CGATCGGAAGTTTTTCGCAAAGA 60.364 43.478 7.38 0.00 33.98 2.52
947 970 2.902484 CGATCGGAAGTTTTTCGCAAAG 59.098 45.455 7.38 0.00 33.98 2.77
948 971 2.544686 TCGATCGGAAGTTTTTCGCAAA 59.455 40.909 16.41 0.00 33.98 3.68
949 972 2.136728 TCGATCGGAAGTTTTTCGCAA 58.863 42.857 16.41 0.00 33.98 4.85
950 973 1.724623 CTCGATCGGAAGTTTTTCGCA 59.275 47.619 16.41 0.00 33.98 5.10
951 974 1.527188 GCTCGATCGGAAGTTTTTCGC 60.527 52.381 16.41 0.00 33.98 4.70
952 975 1.724623 TGCTCGATCGGAAGTTTTTCG 59.275 47.619 16.41 0.00 33.98 3.46
953 976 2.159693 GGTGCTCGATCGGAAGTTTTTC 60.160 50.000 16.41 0.00 0.00 2.29
954 977 1.804748 GGTGCTCGATCGGAAGTTTTT 59.195 47.619 16.41 0.00 0.00 1.94
955 978 1.002087 AGGTGCTCGATCGGAAGTTTT 59.998 47.619 16.41 0.00 0.00 2.43
956 979 0.608640 AGGTGCTCGATCGGAAGTTT 59.391 50.000 16.41 0.00 0.00 2.66
957 980 0.608640 AAGGTGCTCGATCGGAAGTT 59.391 50.000 16.41 0.00 0.00 2.66
958 981 1.471119 TAAGGTGCTCGATCGGAAGT 58.529 50.000 16.41 0.00 0.00 3.01
959 982 2.802787 ATAAGGTGCTCGATCGGAAG 57.197 50.000 16.41 7.40 0.00 3.46
960 983 3.635373 ACTAATAAGGTGCTCGATCGGAA 59.365 43.478 16.41 0.00 0.00 4.30
961 984 3.004419 CACTAATAAGGTGCTCGATCGGA 59.996 47.826 16.41 1.00 0.00 4.55
962 985 3.309388 CACTAATAAGGTGCTCGATCGG 58.691 50.000 16.41 7.26 0.00 4.18
1020 1043 7.760131 ATTTCTTGCACGAAATGAATATTGG 57.240 32.000 25.33 0.00 40.91 3.16
1049 1072 7.319646 GCTCACATCTTCCTGGAGTAATATAG 58.680 42.308 0.00 0.00 0.00 1.31
1050 1073 6.071896 CGCTCACATCTTCCTGGAGTAATATA 60.072 42.308 0.00 0.00 0.00 0.86
1051 1074 5.279206 CGCTCACATCTTCCTGGAGTAATAT 60.279 44.000 0.00 0.00 0.00 1.28
1052 1075 4.038042 CGCTCACATCTTCCTGGAGTAATA 59.962 45.833 0.00 0.00 0.00 0.98
1053 1076 3.181471 CGCTCACATCTTCCTGGAGTAAT 60.181 47.826 0.00 0.00 0.00 1.89
1054 1077 2.166459 CGCTCACATCTTCCTGGAGTAA 59.834 50.000 0.00 0.00 0.00 2.24
1072 1095 1.702886 CTGATTCGTTGTGACTCGCT 58.297 50.000 0.00 0.00 0.00 4.93
1073 1096 0.093705 GCTGATTCGTTGTGACTCGC 59.906 55.000 0.00 0.00 0.00 5.03
1074 1097 1.388093 CTGCTGATTCGTTGTGACTCG 59.612 52.381 0.00 0.00 0.00 4.18
1075 1098 1.728971 CCTGCTGATTCGTTGTGACTC 59.271 52.381 0.00 0.00 0.00 3.36
1076 1099 1.344438 TCCTGCTGATTCGTTGTGACT 59.656 47.619 0.00 0.00 0.00 3.41
1077 1100 1.795768 TCCTGCTGATTCGTTGTGAC 58.204 50.000 0.00 0.00 0.00 3.67
1078 1101 2.234661 AGATCCTGCTGATTCGTTGTGA 59.765 45.455 0.00 0.00 32.41 3.58
1079 1102 2.625737 AGATCCTGCTGATTCGTTGTG 58.374 47.619 0.00 0.00 32.41 3.33
1080 1103 3.340814 AAGATCCTGCTGATTCGTTGT 57.659 42.857 0.00 0.00 32.41 3.32
1081 1104 4.409570 CAAAAGATCCTGCTGATTCGTTG 58.590 43.478 0.00 0.00 32.41 4.10
1093 1116 6.721318 TGGTAATAACTCTGCAAAAGATCCT 58.279 36.000 2.91 0.00 33.29 3.24
1115 1138 2.200067 GAGAGCATCGTGAATGACTGG 58.800 52.381 0.00 0.00 42.67 4.00
1129 1152 8.521176 GTCCTTAGGTATAATATTTCGAGAGCA 58.479 37.037 0.00 0.00 0.00 4.26
1130 1153 7.975058 GGTCCTTAGGTATAATATTTCGAGAGC 59.025 40.741 0.00 0.00 0.00 4.09
1147 1170 1.065854 CCTCTGCAACTGGTCCTTAGG 60.066 57.143 0.00 0.00 0.00 2.69
1148 1171 1.677217 GCCTCTGCAACTGGTCCTTAG 60.677 57.143 0.00 0.00 37.47 2.18
1245 1271 2.362375 GAAATGGCGGGGGAAGCA 60.362 61.111 0.00 0.00 36.08 3.91
1248 1274 1.076339 GGATGAAATGGCGGGGGAA 60.076 57.895 0.00 0.00 0.00 3.97
1332 1358 0.318614 GGATGTGGTTGTTGTTGCCG 60.319 55.000 0.00 0.00 0.00 5.69
1377 1403 0.690077 GGAAGTCCCTCCCGTATGGT 60.690 60.000 0.00 0.00 34.77 3.55
1440 1466 1.977544 CTCGTTGAGGAGGTCCGGT 60.978 63.158 0.00 0.00 42.08 5.28
1554 1580 4.766088 GTCCGGTCGTCGAACCCG 62.766 72.222 15.35 15.35 42.43 5.28
1708 1734 1.818674 AGTGAAATCATTGGTTCCCGC 59.181 47.619 0.00 0.00 0.00 6.13
1741 1767 1.456518 CCAGCCTCCTCCTCGATGA 60.457 63.158 0.00 0.00 0.00 2.92
1796 1822 0.320050 TACCTTGACATGAGCACGCA 59.680 50.000 0.00 0.00 0.00 5.24
1826 1852 4.807643 GCTTGGTAGACAAAGACCCAGAAT 60.808 45.833 0.72 0.00 38.91 2.40
1835 1861 3.188048 CAGAAGCAGCTTGGTAGACAAAG 59.812 47.826 13.91 0.00 38.91 2.77
1837 1863 2.104792 ACAGAAGCAGCTTGGTAGACAA 59.895 45.455 13.91 0.00 37.55 3.18
1839 1865 2.464157 ACAGAAGCAGCTTGGTAGAC 57.536 50.000 13.91 0.00 0.00 2.59
2041 2067 1.638133 CCTCACTGTTCTGCTCATCG 58.362 55.000 0.00 0.00 0.00 3.84
2143 2169 1.683790 CCGTCAAAGCTTCGTAGGCG 61.684 60.000 0.00 3.77 39.92 5.52
2158 2184 1.153349 GCCCTGAAGGATCACCGTC 60.153 63.158 0.00 0.00 43.25 4.79
2200 2226 7.781324 AAGTTGGGAATCATGACATTTACTT 57.219 32.000 0.00 1.50 0.00 2.24
2204 2230 9.872684 AGATATAAGTTGGGAATCATGACATTT 57.127 29.630 0.00 0.00 0.00 2.32
2351 2379 8.037758 TGCTTTCTTGGTGTTTTTATTCAGAAA 58.962 29.630 0.00 0.00 0.00 2.52
2381 2410 8.463930 TCTTGGTGTTTTTATTCAGAACTGAT 57.536 30.769 5.34 0.00 39.64 2.90
2408 2437 6.619801 AAACACCAAGAAAGCAGTAGTTAG 57.380 37.500 0.00 0.00 0.00 2.34
2409 2438 7.399245 AAAAACACCAAGAAAGCAGTAGTTA 57.601 32.000 0.00 0.00 0.00 2.24
2410 2439 5.914898 AAAACACCAAGAAAGCAGTAGTT 57.085 34.783 0.00 0.00 0.00 2.24
2412 2441 8.134895 TGAATAAAAACACCAAGAAAGCAGTAG 58.865 33.333 0.00 0.00 0.00 2.57
2413 2442 8.001881 TGAATAAAAACACCAAGAAAGCAGTA 57.998 30.769 0.00 0.00 0.00 2.74
2414 2443 6.872920 TGAATAAAAACACCAAGAAAGCAGT 58.127 32.000 0.00 0.00 0.00 4.40
2415 2444 7.202526 TCTGAATAAAAACACCAAGAAAGCAG 58.797 34.615 0.00 0.00 0.00 4.24
2416 2445 7.106439 TCTGAATAAAAACACCAAGAAAGCA 57.894 32.000 0.00 0.00 0.00 3.91
2417 2446 7.706607 AGTTCTGAATAAAAACACCAAGAAAGC 59.293 33.333 0.00 0.00 0.00 3.51
2421 2450 9.403583 AGTTAGTTCTGAATAAAAACACCAAGA 57.596 29.630 0.00 0.00 0.00 3.02
2424 2453 9.616156 TGTAGTTAGTTCTGAATAAAAACACCA 57.384 29.630 0.00 0.00 0.00 4.17
2425 2454 9.874215 GTGTAGTTAGTTCTGAATAAAAACACC 57.126 33.333 15.06 6.39 30.28 4.16
2436 2465 9.736414 ACTATTACTCAGTGTAGTTAGTTCTGA 57.264 33.333 0.00 0.00 32.66 3.27
2439 2468 9.934190 GCTACTATTACTCAGTGTAGTTAGTTC 57.066 37.037 9.28 3.90 35.47 3.01
2440 2469 9.683870 AGCTACTATTACTCAGTGTAGTTAGTT 57.316 33.333 9.28 3.01 35.47 2.24
2448 2477 9.409918 TCTGATTTAGCTACTATTACTCAGTGT 57.590 33.333 0.00 0.00 31.75 3.55
2461 2490 7.489574 AGCTTGCTAATTCTGATTTAGCTAC 57.510 36.000 29.48 22.26 35.05 3.58
2470 2499 8.792830 AACTATTTGTAGCTTGCTAATTCTGA 57.207 30.769 3.72 0.00 0.00 3.27
2594 2623 6.546034 ACTGTTAGCTTTTTGGCTTTCTTCTA 59.454 34.615 0.00 0.00 42.97 2.10
2609 2638 6.648879 TTTCTGCCATTAAACTGTTAGCTT 57.351 33.333 0.00 0.00 0.00 3.74
2650 2679 5.045578 AGCATGTAGGGTGACAAGAATAACT 60.046 40.000 0.00 0.00 31.83 2.24
2660 2689 3.412386 ACAAGAAAGCATGTAGGGTGAC 58.588 45.455 0.00 0.00 0.00 3.67
2663 2692 9.338622 GTATAATTACAAGAAAGCATGTAGGGT 57.661 33.333 0.00 0.00 0.00 4.34
2670 2699 9.686683 AGAACTGGTATAATTACAAGAAAGCAT 57.313 29.630 0.00 0.00 33.62 3.79
2689 2718 1.734465 GGCAAAGTCGATGAGAACTGG 59.266 52.381 0.00 0.00 0.00 4.00
2699 2728 3.055458 TCCTGTTATCATGGCAAAGTCGA 60.055 43.478 0.00 0.00 0.00 4.20
2703 2732 7.067372 TCTGTAAATCCTGTTATCATGGCAAAG 59.933 37.037 0.00 0.00 0.00 2.77
2714 2743 6.929049 CAGTGTTGTCTCTGTAAATCCTGTTA 59.071 38.462 0.00 0.00 32.54 2.41
2810 2839 7.394099 CGCATCATAAAATACATAGGATGACG 58.606 38.462 11.14 9.93 41.62 4.35
2978 3007 7.592903 CAGACTTCAAGTAAAAGCCAAAAGATC 59.407 37.037 0.00 0.00 0.00 2.75
3061 3185 8.743085 TTAATTTCTGAGAATGCTGAGCTTAT 57.257 30.769 5.83 0.00 0.00 1.73
3062 3186 8.743085 ATTAATTTCTGAGAATGCTGAGCTTA 57.257 30.769 5.83 0.00 0.00 3.09
3063 3187 7.642082 ATTAATTTCTGAGAATGCTGAGCTT 57.358 32.000 5.83 0.00 0.00 3.74
3064 3188 7.642082 AATTAATTTCTGAGAATGCTGAGCT 57.358 32.000 5.83 0.00 0.00 4.09
3065 3189 9.793252 TTAAATTAATTTCTGAGAATGCTGAGC 57.207 29.630 16.56 0.00 0.00 4.26
3090 3214 7.658982 GCCTTTGATTTCTTGATTTCCTTTCTT 59.341 33.333 0.00 0.00 0.00 2.52
3091 3215 7.157347 GCCTTTGATTTCTTGATTTCCTTTCT 58.843 34.615 0.00 0.00 0.00 2.52
3092 3216 6.930722 TGCCTTTGATTTCTTGATTTCCTTTC 59.069 34.615 0.00 0.00 0.00 2.62
3093 3217 6.829849 TGCCTTTGATTTCTTGATTTCCTTT 58.170 32.000 0.00 0.00 0.00 3.11
3094 3218 6.423776 TGCCTTTGATTTCTTGATTTCCTT 57.576 33.333 0.00 0.00 0.00 3.36
3095 3219 6.616237 ATGCCTTTGATTTCTTGATTTCCT 57.384 33.333 0.00 0.00 0.00 3.36
3096 3220 7.818930 TGTTATGCCTTTGATTTCTTGATTTCC 59.181 33.333 0.00 0.00 0.00 3.13
3097 3221 8.761575 TGTTATGCCTTTGATTTCTTGATTTC 57.238 30.769 0.00 0.00 0.00 2.17
3098 3222 9.158233 CATGTTATGCCTTTGATTTCTTGATTT 57.842 29.630 0.00 0.00 0.00 2.17
3099 3223 8.316214 ACATGTTATGCCTTTGATTTCTTGATT 58.684 29.630 0.00 0.00 0.00 2.57
3100 3224 7.762615 CACATGTTATGCCTTTGATTTCTTGAT 59.237 33.333 0.00 0.00 0.00 2.57
3101 3225 7.092079 CACATGTTATGCCTTTGATTTCTTGA 58.908 34.615 0.00 0.00 0.00 3.02
3102 3226 6.869913 ACACATGTTATGCCTTTGATTTCTTG 59.130 34.615 0.00 0.00 0.00 3.02
3103 3227 6.996509 ACACATGTTATGCCTTTGATTTCTT 58.003 32.000 0.00 0.00 0.00 2.52
3104 3228 6.594788 ACACATGTTATGCCTTTGATTTCT 57.405 33.333 0.00 0.00 0.00 2.52
3105 3229 7.410728 CGAAACACATGTTATGCCTTTGATTTC 60.411 37.037 0.00 0.00 37.25 2.17
3106 3230 6.365789 CGAAACACATGTTATGCCTTTGATTT 59.634 34.615 0.00 0.00 37.25 2.17
3107 3231 5.863397 CGAAACACATGTTATGCCTTTGATT 59.137 36.000 0.00 0.00 37.25 2.57
3108 3232 5.048083 ACGAAACACATGTTATGCCTTTGAT 60.048 36.000 0.00 0.00 37.25 2.57
3109 3233 4.277174 ACGAAACACATGTTATGCCTTTGA 59.723 37.500 0.00 0.00 37.25 2.69
3110 3234 4.545610 ACGAAACACATGTTATGCCTTTG 58.454 39.130 0.00 0.00 37.25 2.77
3111 3235 4.846779 ACGAAACACATGTTATGCCTTT 57.153 36.364 0.00 0.00 37.25 3.11
3112 3236 4.846779 AACGAAACACATGTTATGCCTT 57.153 36.364 0.00 0.00 37.25 4.35
3113 3237 4.037446 ACAAACGAAACACATGTTATGCCT 59.963 37.500 0.00 0.00 37.25 4.75
3114 3238 4.295051 ACAAACGAAACACATGTTATGCC 58.705 39.130 0.00 0.00 37.25 4.40
3115 3239 5.881637 AACAAACGAAACACATGTTATGC 57.118 34.783 0.00 0.00 37.25 3.14
3120 3244 9.601971 GTATAACATAACAAACGAAACACATGT 57.398 29.630 0.00 0.00 0.00 3.21
3121 3245 9.600646 TGTATAACATAACAAACGAAACACATG 57.399 29.630 0.00 0.00 0.00 3.21
3122 3246 9.601971 GTGTATAACATAACAAACGAAACACAT 57.398 29.630 0.00 0.00 34.12 3.21
3123 3247 8.610035 TGTGTATAACATAACAAACGAAACACA 58.390 29.630 0.00 0.00 39.76 3.72
3124 3248 8.990722 TGTGTATAACATAACAAACGAAACAC 57.009 30.769 0.00 0.00 32.36 3.32
3138 3262 9.494271 CTGAGCTTACCATATTGTGTATAACAT 57.506 33.333 0.00 0.00 38.99 2.71
3139 3263 7.441157 GCTGAGCTTACCATATTGTGTATAACA 59.559 37.037 0.00 0.00 36.85 2.41
3140 3264 7.441157 TGCTGAGCTTACCATATTGTGTATAAC 59.559 37.037 5.83 0.00 0.00 1.89
3141 3265 7.505258 TGCTGAGCTTACCATATTGTGTATAA 58.495 34.615 5.83 0.00 0.00 0.98
3142 3266 7.061566 TGCTGAGCTTACCATATTGTGTATA 57.938 36.000 5.83 0.00 0.00 1.47
3143 3267 5.928976 TGCTGAGCTTACCATATTGTGTAT 58.071 37.500 5.83 0.00 0.00 2.29
3144 3268 5.351948 TGCTGAGCTTACCATATTGTGTA 57.648 39.130 5.83 0.00 0.00 2.90
3145 3269 4.220693 TGCTGAGCTTACCATATTGTGT 57.779 40.909 5.83 0.00 0.00 3.72
3146 3270 5.530171 AGAATGCTGAGCTTACCATATTGTG 59.470 40.000 5.83 0.00 0.00 3.33
3147 3271 5.688807 AGAATGCTGAGCTTACCATATTGT 58.311 37.500 5.83 0.00 0.00 2.71
3148 3272 5.761726 TGAGAATGCTGAGCTTACCATATTG 59.238 40.000 5.83 0.00 0.00 1.90
3149 3273 5.933617 TGAGAATGCTGAGCTTACCATATT 58.066 37.500 5.83 0.00 0.00 1.28
3150 3274 5.549347 CTGAGAATGCTGAGCTTACCATAT 58.451 41.667 5.83 0.00 0.00 1.78
3151 3275 4.741837 GCTGAGAATGCTGAGCTTACCATA 60.742 45.833 4.65 0.00 46.27 2.74
3152 3276 3.806380 CTGAGAATGCTGAGCTTACCAT 58.194 45.455 5.83 0.00 0.00 3.55
3153 3277 2.679059 GCTGAGAATGCTGAGCTTACCA 60.679 50.000 4.65 0.00 46.27 3.25
3154 3278 1.939255 GCTGAGAATGCTGAGCTTACC 59.061 52.381 4.65 0.00 46.27 2.85
3190 3314 8.125978 TGTTATGCCTTTGATTTCTTGATCTT 57.874 30.769 0.00 0.00 0.00 2.40
3247 3384 1.740297 CTGAGAATGCTGAGCTTGCT 58.260 50.000 5.83 2.57 0.00 3.91
3278 3415 7.039270 GCCTTTGACTTTTTAGTTTCCTTTCA 58.961 34.615 0.00 0.00 0.00 2.69
3312 3449 7.348080 TCTCGAGTTTACATAACCTGATCAT 57.652 36.000 13.13 0.00 0.00 2.45
3318 3455 5.662674 AGCTTCTCGAGTTTACATAACCT 57.337 39.130 13.13 0.00 0.00 3.50
3326 3463 4.641094 CCCTTCTCTAGCTTCTCGAGTTTA 59.359 45.833 13.13 0.00 0.00 2.01
3403 3546 1.661463 TGGGACTTGAGAGCTCCATT 58.339 50.000 10.93 0.00 0.00 3.16
3767 3943 4.826274 TGCTGCTATCCTGAAGTAAGTT 57.174 40.909 0.00 0.00 0.00 2.66
3786 3962 9.846248 ATTACTCTTCATTAAACTGTTGAATGC 57.154 29.630 21.05 0.00 31.86 3.56
3862 4038 1.615392 GTGGAAGCATGCCTTTTGACT 59.385 47.619 15.66 0.00 31.46 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.