Multiple sequence alignment - TraesCS3A01G348200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G348200 chr3A 100.000 4124 0 0 1 4124 597161513 597165636 0.000000e+00 7616.0
1 TraesCS3A01G348200 chr3A 100.000 34 0 0 3739 3772 726131057 726131024 3.440000e-06 63.9
2 TraesCS3A01G348200 chr3A 97.059 34 0 1 3739 3772 47261742 47261774 5.760000e-04 56.5
3 TraesCS3A01G348200 chr3D 95.746 3597 101 21 552 4124 454890572 454894140 0.000000e+00 5747.0
4 TraesCS3A01G348200 chr3B 95.160 3182 111 19 563 3721 597765507 597768668 0.000000e+00 4983.0
5 TraesCS3A01G348200 chr3B 94.932 296 15 0 3716 4011 597782289 597782584 8.070000e-127 464.0
6 TraesCS3A01G348200 chr3B 92.079 202 13 1 347 545 597765320 597765521 8.730000e-72 281.0
7 TraesCS3A01G348200 chr3B 91.146 192 15 2 2874 3064 607525520 607525710 4.090000e-65 259.0
8 TraesCS3A01G348200 chr3B 100.000 31 0 0 3742 3772 59446006 59446036 1.600000e-04 58.4
9 TraesCS3A01G348200 chr1D 82.137 1965 320 28 1096 3036 392553365 392555322 0.000000e+00 1655.0
10 TraesCS3A01G348200 chr1D 90.987 233 21 0 107 339 105976099 105975867 8.610000e-82 315.0
11 TraesCS3A01G348200 chr1D 90.558 233 22 0 107 339 105355915 105355683 4.000000e-80 309.0
12 TraesCS3A01G348200 chr1A 81.823 1964 328 27 1096 3036 492809429 492807472 0.000000e+00 1622.0
13 TraesCS3A01G348200 chr1A 90.909 44 3 1 3739 3782 224818502 224818460 1.600000e-04 58.4
14 TraesCS3A01G348200 chr1B 81.610 1963 331 26 1096 3036 530063209 530061255 0.000000e+00 1598.0
15 TraesCS3A01G348200 chr7B 92.373 236 16 2 107 341 128824030 128823796 6.610000e-88 335.0
16 TraesCS3A01G348200 chr2D 91.026 234 21 0 107 340 639392118 639391885 2.390000e-82 316.0
17 TraesCS3A01G348200 chr6B 86.695 233 31 0 107 339 173660792 173661024 4.090000e-65 259.0
18 TraesCS3A01G348200 chr6B 90.566 53 4 1 3731 3783 474817550 474817601 7.400000e-08 69.4
19 TraesCS3A01G348200 chr5B 90.909 44 3 1 3739 3782 164398713 164398755 1.600000e-04 58.4
20 TraesCS3A01G348200 chr4A 92.105 38 3 0 3745 3782 638173399 638173362 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G348200 chr3A 597161513 597165636 4123 False 7616 7616 100.0000 1 4124 1 chr3A.!!$F2 4123
1 TraesCS3A01G348200 chr3D 454890572 454894140 3568 False 5747 5747 95.7460 552 4124 1 chr3D.!!$F1 3572
2 TraesCS3A01G348200 chr3B 597765320 597768668 3348 False 2632 4983 93.6195 347 3721 2 chr3B.!!$F4 3374
3 TraesCS3A01G348200 chr1D 392553365 392555322 1957 False 1655 1655 82.1370 1096 3036 1 chr1D.!!$F1 1940
4 TraesCS3A01G348200 chr1A 492807472 492809429 1957 True 1622 1622 81.8230 1096 3036 1 chr1A.!!$R2 1940
5 TraesCS3A01G348200 chr1B 530061255 530063209 1954 True 1598 1598 81.6100 1096 3036 1 chr1B.!!$R1 1940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.179067 TGGTTTCGGAAGTGAAGCGT 60.179 50.0 0.00 0.00 30.71 5.07 F
520 524 0.398696 TTTTCCTCCCTACGCAGCAA 59.601 50.0 0.00 0.00 0.00 3.91 F
582 586 0.478507 AGTTAAGCAGCCAACCACCT 59.521 50.0 4.26 0.00 0.00 4.00 F
1056 1068 0.895530 TGACCAAACCCTAGCTCGAG 59.104 55.0 8.45 8.45 0.00 4.04 F
2579 2644 0.898789 AGATATACAGGGACCCGCCG 60.899 60.0 4.40 0.00 37.63 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1106 1123 2.035155 TTCTCCTCGCCGTCCTCA 59.965 61.111 0.00 0.00 0.00 3.86 R
2195 2260 1.007336 CGAAAACAGGGTCGAGGTCG 61.007 60.000 0.00 0.00 39.64 4.79 R
2579 2644 0.254178 TCAAGAAGATGGAGGCCAGC 59.746 55.000 5.01 0.00 40.67 4.85 R
2964 3029 0.467384 ATGAACAGATCCTGCGGAGG 59.533 55.000 18.34 18.34 41.39 4.30 R
3777 3849 2.226330 ACAGCGCAAAATTGTACTCCA 58.774 42.857 11.47 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.824243 AAAGACGTTTCTATCAACTCACG 57.176 39.130 0.00 0.00 0.00 4.35
23 24 4.761235 AGACGTTTCTATCAACTCACGA 57.239 40.909 0.00 0.00 0.00 4.35
24 25 5.117355 AGACGTTTCTATCAACTCACGAA 57.883 39.130 0.00 0.00 0.00 3.85
25 26 5.154932 AGACGTTTCTATCAACTCACGAAG 58.845 41.667 0.00 0.00 0.00 3.79
27 28 4.916249 ACGTTTCTATCAACTCACGAAGTC 59.084 41.667 0.00 0.00 41.61 3.01
28 29 4.029198 CGTTTCTATCAACTCACGAAGTCG 59.971 45.833 0.00 0.00 41.61 4.18
47 48 2.905260 GTCAAGTTGTGACGACTTCG 57.095 50.000 15.07 10.97 46.99 3.79
63 64 6.014115 CGACTTCGTCAATCTAAGATGTTG 57.986 41.667 0.00 0.00 32.09 3.33
64 65 5.573282 CGACTTCGTCAATCTAAGATGTTGT 59.427 40.000 0.00 0.00 32.09 3.32
65 66 6.453003 CGACTTCGTCAATCTAAGATGTTGTG 60.453 42.308 0.00 0.00 32.09 3.33
66 67 6.223852 ACTTCGTCAATCTAAGATGTTGTGT 58.776 36.000 0.00 0.00 0.00 3.72
67 68 6.706270 ACTTCGTCAATCTAAGATGTTGTGTT 59.294 34.615 0.00 0.00 0.00 3.32
68 69 6.466308 TCGTCAATCTAAGATGTTGTGTTG 57.534 37.500 0.00 0.00 0.00 3.33
69 70 5.408299 TCGTCAATCTAAGATGTTGTGTTGG 59.592 40.000 0.00 0.00 0.00 3.77
70 71 5.393962 GTCAATCTAAGATGTTGTGTTGGC 58.606 41.667 0.00 0.00 0.00 4.52
71 72 5.182001 GTCAATCTAAGATGTTGTGTTGGCT 59.818 40.000 0.00 0.00 0.00 4.75
72 73 5.412594 TCAATCTAAGATGTTGTGTTGGCTC 59.587 40.000 0.00 0.00 0.00 4.70
73 74 4.350368 TCTAAGATGTTGTGTTGGCTCA 57.650 40.909 0.00 0.00 0.00 4.26
74 75 4.713553 TCTAAGATGTTGTGTTGGCTCAA 58.286 39.130 0.00 0.00 0.00 3.02
75 76 5.316167 TCTAAGATGTTGTGTTGGCTCAAT 58.684 37.500 0.00 0.00 31.87 2.57
76 77 6.472016 TCTAAGATGTTGTGTTGGCTCAATA 58.528 36.000 0.00 0.00 31.87 1.90
77 78 7.112122 TCTAAGATGTTGTGTTGGCTCAATAT 58.888 34.615 0.00 0.00 34.31 1.28
78 79 6.594788 AAGATGTTGTGTTGGCTCAATATT 57.405 33.333 0.00 0.00 32.67 1.28
79 80 6.594788 AGATGTTGTGTTGGCTCAATATTT 57.405 33.333 0.00 0.00 32.67 1.40
80 81 6.624423 AGATGTTGTGTTGGCTCAATATTTC 58.376 36.000 0.00 0.00 32.67 2.17
81 82 5.781210 TGTTGTGTTGGCTCAATATTTCA 57.219 34.783 0.00 0.00 31.87 2.69
82 83 5.771469 TGTTGTGTTGGCTCAATATTTCAG 58.229 37.500 0.00 0.00 31.87 3.02
83 84 5.534278 TGTTGTGTTGGCTCAATATTTCAGA 59.466 36.000 0.00 0.00 31.87 3.27
84 85 5.885230 TGTGTTGGCTCAATATTTCAGAG 57.115 39.130 0.00 0.00 0.00 3.35
85 86 5.316167 TGTGTTGGCTCAATATTTCAGAGT 58.684 37.500 3.91 0.00 0.00 3.24
86 87 5.181811 TGTGTTGGCTCAATATTTCAGAGTG 59.818 40.000 3.91 0.00 0.00 3.51
87 88 5.182001 GTGTTGGCTCAATATTTCAGAGTGT 59.818 40.000 3.91 0.00 0.00 3.55
88 89 5.181811 TGTTGGCTCAATATTTCAGAGTGTG 59.818 40.000 3.91 0.00 0.00 3.82
89 90 3.691118 TGGCTCAATATTTCAGAGTGTGC 59.309 43.478 3.91 0.00 0.00 4.57
90 91 3.242543 GGCTCAATATTTCAGAGTGTGCG 60.243 47.826 3.91 0.00 31.28 5.34
91 92 3.372206 GCTCAATATTTCAGAGTGTGCGT 59.628 43.478 3.91 0.00 0.00 5.24
92 93 4.566759 GCTCAATATTTCAGAGTGTGCGTA 59.433 41.667 3.91 0.00 0.00 4.42
93 94 5.500931 GCTCAATATTTCAGAGTGTGCGTAC 60.501 44.000 0.00 0.00 0.00 3.67
94 95 4.561213 TCAATATTTCAGAGTGTGCGTACG 59.439 41.667 11.84 11.84 0.00 3.67
95 96 2.433868 ATTTCAGAGTGTGCGTACGT 57.566 45.000 17.90 0.00 0.00 3.57
96 97 3.564235 ATTTCAGAGTGTGCGTACGTA 57.436 42.857 17.90 10.06 0.00 3.57
97 98 3.564235 TTTCAGAGTGTGCGTACGTAT 57.436 42.857 17.90 0.00 0.00 3.06
98 99 2.537639 TCAGAGTGTGCGTACGTATG 57.462 50.000 17.90 10.54 0.00 2.39
99 100 1.808343 TCAGAGTGTGCGTACGTATGT 59.192 47.619 17.90 0.76 0.00 2.29
100 101 2.227149 TCAGAGTGTGCGTACGTATGTT 59.773 45.455 17.90 1.62 0.00 2.71
101 102 2.592897 CAGAGTGTGCGTACGTATGTTC 59.407 50.000 17.90 10.82 0.00 3.18
102 103 2.227149 AGAGTGTGCGTACGTATGTTCA 59.773 45.455 17.90 11.98 0.00 3.18
103 104 2.592194 AGTGTGCGTACGTATGTTCAG 58.408 47.619 17.90 0.00 0.00 3.02
104 105 2.227149 AGTGTGCGTACGTATGTTCAGA 59.773 45.455 17.90 0.37 0.00 3.27
105 106 2.592897 GTGTGCGTACGTATGTTCAGAG 59.407 50.000 17.90 0.00 0.00 3.35
106 107 2.485038 TGTGCGTACGTATGTTCAGAGA 59.515 45.455 17.90 0.00 0.00 3.10
107 108 3.099362 GTGCGTACGTATGTTCAGAGAG 58.901 50.000 17.90 0.00 0.00 3.20
108 109 2.745821 TGCGTACGTATGTTCAGAGAGT 59.254 45.455 17.90 0.00 0.00 3.24
109 110 3.934579 TGCGTACGTATGTTCAGAGAGTA 59.065 43.478 17.90 0.00 0.00 2.59
110 111 4.201753 TGCGTACGTATGTTCAGAGAGTAC 60.202 45.833 17.90 0.00 0.00 2.73
111 112 4.503471 CGTACGTATGTTCAGAGAGTACG 58.497 47.826 7.22 15.21 45.79 3.67
112 113 3.402058 ACGTATGTTCAGAGAGTACGC 57.598 47.619 9.28 0.00 41.12 4.42
113 114 2.097142 ACGTATGTTCAGAGAGTACGCC 59.903 50.000 9.28 0.00 41.12 5.68
114 115 2.096980 CGTATGTTCAGAGAGTACGCCA 59.903 50.000 0.00 0.00 32.93 5.69
115 116 3.243101 CGTATGTTCAGAGAGTACGCCAT 60.243 47.826 0.00 0.00 32.93 4.40
116 117 2.654749 TGTTCAGAGAGTACGCCATG 57.345 50.000 0.00 0.00 0.00 3.66
117 118 2.167662 TGTTCAGAGAGTACGCCATGA 58.832 47.619 0.00 0.00 0.00 3.07
118 119 2.760650 TGTTCAGAGAGTACGCCATGAT 59.239 45.455 0.00 0.00 0.00 2.45
119 120 3.119291 GTTCAGAGAGTACGCCATGATG 58.881 50.000 0.00 0.00 0.00 3.07
120 121 1.683385 TCAGAGAGTACGCCATGATGG 59.317 52.381 7.21 7.21 41.55 3.51
121 122 1.410517 CAGAGAGTACGCCATGATGGT 59.589 52.381 13.84 0.00 40.46 3.55
122 123 2.111384 AGAGAGTACGCCATGATGGTT 58.889 47.619 13.84 3.13 40.46 3.67
123 124 2.501723 AGAGAGTACGCCATGATGGTTT 59.498 45.455 13.84 2.76 40.46 3.27
124 125 2.866762 GAGAGTACGCCATGATGGTTTC 59.133 50.000 13.84 4.33 40.46 2.78
125 126 1.593006 GAGTACGCCATGATGGTTTCG 59.407 52.381 13.84 10.67 40.46 3.46
126 127 0.655733 GTACGCCATGATGGTTTCGG 59.344 55.000 13.84 0.65 40.46 4.30
127 128 0.537653 TACGCCATGATGGTTTCGGA 59.462 50.000 13.84 1.75 40.46 4.55
128 129 0.322098 ACGCCATGATGGTTTCGGAA 60.322 50.000 13.84 0.00 40.46 4.30
129 130 0.378257 CGCCATGATGGTTTCGGAAG 59.622 55.000 13.84 0.00 40.46 3.46
130 131 1.463674 GCCATGATGGTTTCGGAAGT 58.536 50.000 13.84 0.00 40.46 3.01
131 132 1.133025 GCCATGATGGTTTCGGAAGTG 59.867 52.381 13.84 0.00 40.46 3.16
132 133 2.710377 CCATGATGGTTTCGGAAGTGA 58.290 47.619 2.54 0.00 31.35 3.41
133 134 3.081061 CCATGATGGTTTCGGAAGTGAA 58.919 45.455 2.54 0.00 31.35 3.18
134 135 3.127548 CCATGATGGTTTCGGAAGTGAAG 59.872 47.826 2.54 0.00 31.35 3.02
135 136 2.151202 TGATGGTTTCGGAAGTGAAGC 58.849 47.619 0.00 0.00 0.00 3.86
136 137 1.128692 GATGGTTTCGGAAGTGAAGCG 59.871 52.381 0.00 0.00 30.71 4.68
137 138 0.179067 TGGTTTCGGAAGTGAAGCGT 60.179 50.000 0.00 0.00 30.71 5.07
138 139 0.511653 GGTTTCGGAAGTGAAGCGTC 59.488 55.000 0.00 0.00 30.71 5.19
139 140 1.499049 GTTTCGGAAGTGAAGCGTCT 58.501 50.000 0.31 0.00 0.00 4.18
140 141 1.865340 GTTTCGGAAGTGAAGCGTCTT 59.135 47.619 0.31 0.00 0.00 3.01
141 142 3.054878 GTTTCGGAAGTGAAGCGTCTTA 58.945 45.455 0.31 0.00 0.00 2.10
142 143 3.587797 TTCGGAAGTGAAGCGTCTTAT 57.412 42.857 0.31 0.00 0.00 1.73
143 144 2.876091 TCGGAAGTGAAGCGTCTTATG 58.124 47.619 0.31 0.00 0.00 1.90
144 145 2.490509 TCGGAAGTGAAGCGTCTTATGA 59.509 45.455 0.31 0.00 0.00 2.15
145 146 2.854777 CGGAAGTGAAGCGTCTTATGAG 59.145 50.000 0.31 0.00 0.00 2.90
146 147 3.673594 CGGAAGTGAAGCGTCTTATGAGT 60.674 47.826 0.31 0.00 0.00 3.41
147 148 3.614616 GGAAGTGAAGCGTCTTATGAGTG 59.385 47.826 0.31 0.00 0.00 3.51
148 149 4.486090 GAAGTGAAGCGTCTTATGAGTGA 58.514 43.478 0.31 0.00 0.00 3.41
149 150 4.521130 AGTGAAGCGTCTTATGAGTGAA 57.479 40.909 0.31 0.00 0.00 3.18
150 151 4.883083 AGTGAAGCGTCTTATGAGTGAAA 58.117 39.130 0.31 0.00 0.00 2.69
151 152 4.926238 AGTGAAGCGTCTTATGAGTGAAAG 59.074 41.667 0.31 0.00 0.00 2.62
152 153 4.092091 GTGAAGCGTCTTATGAGTGAAAGG 59.908 45.833 0.31 0.00 0.00 3.11
153 154 3.252974 AGCGTCTTATGAGTGAAAGGG 57.747 47.619 0.00 0.00 0.00 3.95
154 155 2.832129 AGCGTCTTATGAGTGAAAGGGA 59.168 45.455 0.00 0.00 0.00 4.20
155 156 3.118956 AGCGTCTTATGAGTGAAAGGGAG 60.119 47.826 0.00 0.00 0.00 4.30
156 157 3.368531 GCGTCTTATGAGTGAAAGGGAGT 60.369 47.826 0.00 0.00 0.00 3.85
157 158 4.177026 CGTCTTATGAGTGAAAGGGAGTG 58.823 47.826 0.00 0.00 0.00 3.51
158 159 4.322049 CGTCTTATGAGTGAAAGGGAGTGT 60.322 45.833 0.00 0.00 0.00 3.55
159 160 5.172205 GTCTTATGAGTGAAAGGGAGTGTC 58.828 45.833 0.00 0.00 0.00 3.67
160 161 2.751166 ATGAGTGAAAGGGAGTGTCG 57.249 50.000 0.00 0.00 0.00 4.35
161 162 1.410004 TGAGTGAAAGGGAGTGTCGT 58.590 50.000 0.00 0.00 0.00 4.34
162 163 1.760613 TGAGTGAAAGGGAGTGTCGTT 59.239 47.619 0.00 0.00 0.00 3.85
163 164 2.169769 TGAGTGAAAGGGAGTGTCGTTT 59.830 45.455 0.00 0.00 0.00 3.60
164 165 3.203716 GAGTGAAAGGGAGTGTCGTTTT 58.796 45.455 0.00 0.00 0.00 2.43
165 166 2.943033 AGTGAAAGGGAGTGTCGTTTTG 59.057 45.455 0.00 0.00 0.00 2.44
166 167 2.681344 GTGAAAGGGAGTGTCGTTTTGT 59.319 45.455 0.00 0.00 0.00 2.83
167 168 3.128068 GTGAAAGGGAGTGTCGTTTTGTT 59.872 43.478 0.00 0.00 0.00 2.83
168 169 3.375922 TGAAAGGGAGTGTCGTTTTGTTC 59.624 43.478 0.00 0.00 0.00 3.18
169 170 2.702592 AGGGAGTGTCGTTTTGTTCA 57.297 45.000 0.00 0.00 0.00 3.18
170 171 3.208747 AGGGAGTGTCGTTTTGTTCAT 57.791 42.857 0.00 0.00 0.00 2.57
171 172 4.345859 AGGGAGTGTCGTTTTGTTCATA 57.654 40.909 0.00 0.00 0.00 2.15
172 173 4.906618 AGGGAGTGTCGTTTTGTTCATAT 58.093 39.130 0.00 0.00 0.00 1.78
173 174 5.313712 AGGGAGTGTCGTTTTGTTCATATT 58.686 37.500 0.00 0.00 0.00 1.28
174 175 5.768164 AGGGAGTGTCGTTTTGTTCATATTT 59.232 36.000 0.00 0.00 0.00 1.40
175 176 6.072673 AGGGAGTGTCGTTTTGTTCATATTTC 60.073 38.462 0.00 0.00 0.00 2.17
176 177 6.072673 GGGAGTGTCGTTTTGTTCATATTTCT 60.073 38.462 0.00 0.00 0.00 2.52
177 178 7.015877 GGAGTGTCGTTTTGTTCATATTTCTC 58.984 38.462 0.00 0.00 0.00 2.87
178 179 6.590357 AGTGTCGTTTTGTTCATATTTCTCG 58.410 36.000 0.00 0.00 0.00 4.04
179 180 6.422701 AGTGTCGTTTTGTTCATATTTCTCGA 59.577 34.615 0.00 0.00 0.00 4.04
180 181 6.732392 GTGTCGTTTTGTTCATATTTCTCGAG 59.268 38.462 5.93 5.93 0.00 4.04
181 182 6.643360 TGTCGTTTTGTTCATATTTCTCGAGA 59.357 34.615 12.08 12.08 0.00 4.04
182 183 7.148804 TGTCGTTTTGTTCATATTTCTCGAGAG 60.149 37.037 15.94 3.64 0.00 3.20
183 184 5.954349 CGTTTTGTTCATATTTCTCGAGAGC 59.046 40.000 15.94 0.00 0.00 4.09
184 185 6.401047 CGTTTTGTTCATATTTCTCGAGAGCA 60.401 38.462 15.94 7.05 0.00 4.26
185 186 6.653273 TTTGTTCATATTTCTCGAGAGCAG 57.347 37.500 15.94 5.75 0.00 4.24
186 187 5.582689 TGTTCATATTTCTCGAGAGCAGA 57.417 39.130 15.94 7.97 0.00 4.26
187 188 5.965922 TGTTCATATTTCTCGAGAGCAGAA 58.034 37.500 15.94 13.09 0.00 3.02
188 189 6.398095 TGTTCATATTTCTCGAGAGCAGAAA 58.602 36.000 15.94 7.10 39.61 2.52
189 190 6.873605 TGTTCATATTTCTCGAGAGCAGAAAA 59.126 34.615 15.94 6.33 39.15 2.29
190 191 7.387673 TGTTCATATTTCTCGAGAGCAGAAAAA 59.612 33.333 15.94 5.56 39.15 1.94
191 192 8.394121 GTTCATATTTCTCGAGAGCAGAAAAAT 58.606 33.333 15.94 12.58 39.15 1.82
192 193 7.913423 TCATATTTCTCGAGAGCAGAAAAATG 58.087 34.615 15.94 13.76 39.15 2.32
193 194 7.550551 TCATATTTCTCGAGAGCAGAAAAATGT 59.449 33.333 15.94 6.24 39.15 2.71
194 195 8.820933 CATATTTCTCGAGAGCAGAAAAATGTA 58.179 33.333 15.94 0.00 39.15 2.29
195 196 7.672983 ATTTCTCGAGAGCAGAAAAATGTAA 57.327 32.000 15.94 2.52 39.15 2.41
196 197 6.712241 TTCTCGAGAGCAGAAAAATGTAAG 57.288 37.500 15.94 0.00 0.00 2.34
197 198 5.784177 TCTCGAGAGCAGAAAAATGTAAGT 58.216 37.500 12.08 0.00 0.00 2.24
198 199 5.864474 TCTCGAGAGCAGAAAAATGTAAGTC 59.136 40.000 12.08 0.00 0.00 3.01
199 200 5.538118 TCGAGAGCAGAAAAATGTAAGTCA 58.462 37.500 0.00 0.00 0.00 3.41
200 201 6.166279 TCGAGAGCAGAAAAATGTAAGTCAT 58.834 36.000 0.00 0.00 38.57 3.06
201 202 6.091305 TCGAGAGCAGAAAAATGTAAGTCATG 59.909 38.462 0.00 0.00 36.81 3.07
202 203 6.128445 CGAGAGCAGAAAAATGTAAGTCATGT 60.128 38.462 0.00 0.00 36.81 3.21
203 204 6.906659 AGAGCAGAAAAATGTAAGTCATGTG 58.093 36.000 0.00 0.00 36.81 3.21
204 205 6.488006 AGAGCAGAAAAATGTAAGTCATGTGT 59.512 34.615 0.00 0.00 36.81 3.72
205 206 7.013655 AGAGCAGAAAAATGTAAGTCATGTGTT 59.986 33.333 0.00 0.00 36.81 3.32
206 207 6.919662 AGCAGAAAAATGTAAGTCATGTGTTG 59.080 34.615 0.00 0.00 36.81 3.33
207 208 6.144402 GCAGAAAAATGTAAGTCATGTGTTGG 59.856 38.462 0.00 0.00 36.81 3.77
208 209 6.144402 CAGAAAAATGTAAGTCATGTGTTGGC 59.856 38.462 0.00 0.00 36.81 4.52
209 210 5.789643 AAAATGTAAGTCATGTGTTGGCT 57.210 34.783 0.00 0.00 43.96 4.75
210 211 6.892658 AAAATGTAAGTCATGTGTTGGCTA 57.107 33.333 0.00 0.00 40.15 3.93
211 212 6.892658 AAATGTAAGTCATGTGTTGGCTAA 57.107 33.333 0.00 0.00 40.15 3.09
212 213 5.880054 ATGTAAGTCATGTGTTGGCTAAC 57.120 39.130 5.91 5.91 40.15 2.34
213 214 4.968259 TGTAAGTCATGTGTTGGCTAACT 58.032 39.130 14.47 0.00 40.15 2.24
214 215 5.373222 TGTAAGTCATGTGTTGGCTAACTT 58.627 37.500 14.47 0.55 40.15 2.66
215 216 5.825679 TGTAAGTCATGTGTTGGCTAACTTT 59.174 36.000 14.47 0.00 40.15 2.66
216 217 4.836125 AGTCATGTGTTGGCTAACTTTG 57.164 40.909 14.47 8.84 38.94 2.77
217 218 3.569701 AGTCATGTGTTGGCTAACTTTGG 59.430 43.478 14.47 2.19 38.94 3.28
218 219 3.568007 GTCATGTGTTGGCTAACTTTGGA 59.432 43.478 14.47 4.46 37.68 3.53
219 220 4.037446 GTCATGTGTTGGCTAACTTTGGAA 59.963 41.667 14.47 0.00 37.68 3.53
220 221 4.278170 TCATGTGTTGGCTAACTTTGGAAG 59.722 41.667 14.47 0.00 37.68 3.46
221 222 3.892284 TGTGTTGGCTAACTTTGGAAGA 58.108 40.909 14.47 0.00 37.68 2.87
222 223 4.274147 TGTGTTGGCTAACTTTGGAAGAA 58.726 39.130 14.47 0.00 37.68 2.52
223 224 4.097286 TGTGTTGGCTAACTTTGGAAGAAC 59.903 41.667 14.47 1.28 37.68 3.01
224 225 3.314080 TGTTGGCTAACTTTGGAAGAACG 59.686 43.478 14.47 0.00 37.68 3.95
225 226 2.500229 TGGCTAACTTTGGAAGAACGG 58.500 47.619 0.00 0.00 0.00 4.44
226 227 2.105134 TGGCTAACTTTGGAAGAACGGA 59.895 45.455 0.00 0.00 0.00 4.69
227 228 3.143728 GGCTAACTTTGGAAGAACGGAA 58.856 45.455 0.00 0.00 0.00 4.30
228 229 3.188667 GGCTAACTTTGGAAGAACGGAAG 59.811 47.826 0.00 0.00 0.00 3.46
229 230 4.062991 GCTAACTTTGGAAGAACGGAAGA 58.937 43.478 0.00 0.00 0.00 2.87
230 231 4.083961 GCTAACTTTGGAAGAACGGAAGAC 60.084 45.833 0.00 0.00 0.00 3.01
231 232 2.847441 ACTTTGGAAGAACGGAAGACC 58.153 47.619 0.00 0.00 0.00 3.85
247 248 3.666192 ACCGTACTGTGGTCTAGCT 57.334 52.632 0.00 0.00 33.35 3.32
248 249 1.461559 ACCGTACTGTGGTCTAGCTC 58.538 55.000 0.00 0.00 33.35 4.09
249 250 1.004511 ACCGTACTGTGGTCTAGCTCT 59.995 52.381 0.00 0.00 33.35 4.09
250 251 1.402259 CCGTACTGTGGTCTAGCTCTG 59.598 57.143 0.00 0.00 0.00 3.35
251 252 1.202200 CGTACTGTGGTCTAGCTCTGC 60.202 57.143 0.00 0.00 0.00 4.26
252 253 2.096248 GTACTGTGGTCTAGCTCTGCT 58.904 52.381 0.00 0.00 43.41 4.24
253 254 1.181786 ACTGTGGTCTAGCTCTGCTC 58.818 55.000 0.00 0.00 40.44 4.26
254 255 0.459489 CTGTGGTCTAGCTCTGCTCC 59.541 60.000 0.00 0.00 40.44 4.70
255 256 1.315981 TGTGGTCTAGCTCTGCTCCG 61.316 60.000 0.00 0.00 40.44 4.63
256 257 1.754621 TGGTCTAGCTCTGCTCCGG 60.755 63.158 0.00 0.00 40.44 5.14
257 258 2.415426 GTCTAGCTCTGCTCCGGC 59.585 66.667 0.00 0.00 40.44 6.13
258 259 2.835431 TCTAGCTCTGCTCCGGCC 60.835 66.667 0.00 0.00 40.44 6.13
259 260 3.922640 CTAGCTCTGCTCCGGCCC 61.923 72.222 0.00 0.00 40.44 5.80
260 261 4.777854 TAGCTCTGCTCCGGCCCA 62.778 66.667 0.00 0.00 40.44 5.36
262 263 4.722700 GCTCTGCTCCGGCCCAAA 62.723 66.667 0.00 0.00 37.74 3.28
263 264 2.034066 CTCTGCTCCGGCCCAAAA 59.966 61.111 0.00 0.00 37.74 2.44
264 265 1.603455 CTCTGCTCCGGCCCAAAAA 60.603 57.895 0.00 0.00 37.74 1.94
285 286 7.881775 AAAAATATCCCTAGCTTGTGTAAGG 57.118 36.000 0.00 0.00 34.40 2.69
286 287 6.824958 AAATATCCCTAGCTTGTGTAAGGA 57.175 37.500 0.00 0.00 34.40 3.36
287 288 6.426646 AATATCCCTAGCTTGTGTAAGGAG 57.573 41.667 0.00 0.00 34.40 3.69
288 289 2.467880 TCCCTAGCTTGTGTAAGGAGG 58.532 52.381 0.00 0.00 34.40 4.30
289 290 2.188817 CCCTAGCTTGTGTAAGGAGGT 58.811 52.381 0.00 0.00 34.40 3.85
290 291 2.168728 CCCTAGCTTGTGTAAGGAGGTC 59.831 54.545 0.00 0.00 34.40 3.85
291 292 2.168728 CCTAGCTTGTGTAAGGAGGTCC 59.831 54.545 0.00 0.00 34.40 4.46
304 305 4.293662 AGGAGGTCCTTTTTAGCTCTTG 57.706 45.455 0.00 0.00 46.09 3.02
305 306 3.910627 AGGAGGTCCTTTTTAGCTCTTGA 59.089 43.478 0.00 0.00 46.09 3.02
306 307 4.019771 AGGAGGTCCTTTTTAGCTCTTGAG 60.020 45.833 0.00 0.00 46.09 3.02
307 308 4.263112 GGAGGTCCTTTTTAGCTCTTGAGT 60.263 45.833 0.00 0.00 40.51 3.41
308 309 5.046520 GGAGGTCCTTTTTAGCTCTTGAGTA 60.047 44.000 0.00 0.00 40.51 2.59
309 310 6.435292 AGGTCCTTTTTAGCTCTTGAGTAA 57.565 37.500 0.00 0.00 0.00 2.24
310 311 7.021998 AGGTCCTTTTTAGCTCTTGAGTAAT 57.978 36.000 0.00 0.00 0.00 1.89
311 312 8.147244 AGGTCCTTTTTAGCTCTTGAGTAATA 57.853 34.615 0.00 0.00 0.00 0.98
312 313 8.041919 AGGTCCTTTTTAGCTCTTGAGTAATAC 58.958 37.037 0.00 0.00 0.00 1.89
313 314 7.822822 GGTCCTTTTTAGCTCTTGAGTAATACA 59.177 37.037 0.00 0.00 0.00 2.29
314 315 9.216117 GTCCTTTTTAGCTCTTGAGTAATACAA 57.784 33.333 0.00 0.00 0.00 2.41
315 316 9.787435 TCCTTTTTAGCTCTTGAGTAATACAAA 57.213 29.630 0.00 0.00 0.00 2.83
319 320 8.732746 TTTAGCTCTTGAGTAATACAAATCCC 57.267 34.615 0.00 0.00 0.00 3.85
320 321 6.567602 AGCTCTTGAGTAATACAAATCCCT 57.432 37.500 0.00 0.00 0.00 4.20
321 322 6.963322 AGCTCTTGAGTAATACAAATCCCTT 58.037 36.000 0.00 0.00 0.00 3.95
322 323 7.406104 AGCTCTTGAGTAATACAAATCCCTTT 58.594 34.615 0.00 0.00 0.00 3.11
323 324 7.890655 AGCTCTTGAGTAATACAAATCCCTTTT 59.109 33.333 0.00 0.00 0.00 2.27
324 325 9.174166 GCTCTTGAGTAATACAAATCCCTTTTA 57.826 33.333 0.00 0.00 0.00 1.52
329 330 9.847224 TGAGTAATACAAATCCCTTTTATCCTC 57.153 33.333 0.00 0.00 0.00 3.71
330 331 8.904099 AGTAATACAAATCCCTTTTATCCTCG 57.096 34.615 0.00 0.00 0.00 4.63
331 332 6.635030 AATACAAATCCCTTTTATCCTCGC 57.365 37.500 0.00 0.00 0.00 5.03
332 333 3.963129 ACAAATCCCTTTTATCCTCGCA 58.037 40.909 0.00 0.00 0.00 5.10
333 334 4.340617 ACAAATCCCTTTTATCCTCGCAA 58.659 39.130 0.00 0.00 0.00 4.85
334 335 4.770010 ACAAATCCCTTTTATCCTCGCAAA 59.230 37.500 0.00 0.00 0.00 3.68
335 336 5.245075 ACAAATCCCTTTTATCCTCGCAAAA 59.755 36.000 0.00 0.00 0.00 2.44
336 337 5.993748 AATCCCTTTTATCCTCGCAAAAA 57.006 34.783 0.00 0.00 0.00 1.94
352 353 4.375723 AAAAAGTGTGCGTGCGTG 57.624 50.000 0.00 0.00 0.00 5.34
361 362 0.450482 GTGCGTGCGTGTATGTGAAC 60.450 55.000 0.00 0.00 0.00 3.18
380 381 4.216042 TGAACATGTGATCATCTGCGTTTT 59.784 37.500 0.00 0.00 31.15 2.43
474 478 2.233271 CCTGCATTCGATTTGGGCTAT 58.767 47.619 0.00 0.00 0.00 2.97
508 512 0.961753 CACAACCTGGGCTTTTCCTC 59.038 55.000 0.00 0.00 34.39 3.71
520 524 0.398696 TTTTCCTCCCTACGCAGCAA 59.601 50.000 0.00 0.00 0.00 3.91
526 530 2.509336 CCTACGCAGCAACCCGAG 60.509 66.667 0.00 0.00 0.00 4.63
545 549 0.678950 GCCCAAGTTAAGCAGCCAAA 59.321 50.000 0.00 0.00 0.00 3.28
546 550 1.276138 GCCCAAGTTAAGCAGCCAAAT 59.724 47.619 0.00 0.00 0.00 2.32
547 551 2.289631 GCCCAAGTTAAGCAGCCAAATT 60.290 45.455 0.00 0.00 0.00 1.82
548 552 3.588955 CCCAAGTTAAGCAGCCAAATTC 58.411 45.455 0.00 0.00 0.00 2.17
549 553 3.244976 CCAAGTTAAGCAGCCAAATTCG 58.755 45.455 0.00 0.00 0.00 3.34
550 554 3.305335 CCAAGTTAAGCAGCCAAATTCGT 60.305 43.478 0.00 0.00 0.00 3.85
551 555 3.831715 AGTTAAGCAGCCAAATTCGTC 57.168 42.857 0.00 0.00 0.00 4.20
552 556 3.412386 AGTTAAGCAGCCAAATTCGTCT 58.588 40.909 0.00 0.00 0.00 4.18
553 557 3.437049 AGTTAAGCAGCCAAATTCGTCTC 59.563 43.478 0.00 0.00 0.00 3.36
554 558 1.896220 AAGCAGCCAAATTCGTCTCA 58.104 45.000 0.00 0.00 0.00 3.27
555 559 1.896220 AGCAGCCAAATTCGTCTCAA 58.104 45.000 0.00 0.00 0.00 3.02
582 586 0.478507 AGTTAAGCAGCCAACCACCT 59.521 50.000 4.26 0.00 0.00 4.00
610 614 2.180204 CGTTGATCACGCCATCCCC 61.180 63.158 0.00 0.00 43.37 4.81
669 673 3.570550 CGACCAAATGTCCAAAACCCTAA 59.429 43.478 0.00 0.00 41.18 2.69
672 676 4.100344 ACCAAATGTCCAAAACCCTAACAC 59.900 41.667 0.00 0.00 0.00 3.32
673 677 4.100189 CCAAATGTCCAAAACCCTAACACA 59.900 41.667 0.00 0.00 0.00 3.72
674 678 4.929819 AATGTCCAAAACCCTAACACAC 57.070 40.909 0.00 0.00 0.00 3.82
681 685 1.050204 AACCCTAACACACCTACGCA 58.950 50.000 0.00 0.00 0.00 5.24
692 696 4.547905 CTACGCATCGTCGGCCGT 62.548 66.667 27.15 1.49 41.54 5.68
733 738 2.845363 TTAAAACCCCTCACCGTCTC 57.155 50.000 0.00 0.00 0.00 3.36
779 784 4.713735 TCATGCTTTGCGGCCCGA 62.714 61.111 7.68 0.00 0.00 5.14
780 785 3.520862 CATGCTTTGCGGCCCGAT 61.521 61.111 7.68 0.00 0.00 4.18
851 856 2.593436 CCGGCGAAACAACACCCT 60.593 61.111 9.30 0.00 0.00 4.34
853 858 1.296056 CCGGCGAAACAACACCCTAG 61.296 60.000 9.30 0.00 0.00 3.02
857 862 1.425412 CGAAACAACACCCTAGTCCG 58.575 55.000 0.00 0.00 0.00 4.79
901 906 3.014623 CCTCTCCCCACGGTAATTTTTC 58.985 50.000 0.00 0.00 0.00 2.29
903 908 4.270008 CTCTCCCCACGGTAATTTTTCAT 58.730 43.478 0.00 0.00 0.00 2.57
905 910 3.358118 TCCCCACGGTAATTTTTCATCC 58.642 45.455 0.00 0.00 0.00 3.51
907 912 3.119280 CCCCACGGTAATTTTTCATCCAC 60.119 47.826 0.00 0.00 0.00 4.02
1056 1068 0.895530 TGACCAAACCCTAGCTCGAG 59.104 55.000 8.45 8.45 0.00 4.04
2195 2260 4.593864 GTGCGCGATCTCCTCCCC 62.594 72.222 12.10 0.00 0.00 4.81
2579 2644 0.898789 AGATATACAGGGACCCGCCG 60.899 60.000 4.40 0.00 37.63 6.46
2684 2749 3.340928 TGACTGGATGAAGCAGATGTTG 58.659 45.455 0.00 0.00 0.00 3.33
2826 2891 4.265073 ACTTCAGATGTTCAATGGCTACC 58.735 43.478 0.00 0.00 0.00 3.18
2846 2911 4.610714 GAGGAGATTCGGGCGGCC 62.611 72.222 20.04 20.04 0.00 6.13
2942 3007 1.534595 GCATACAAGGGCTTGATTGCG 60.535 52.381 0.00 0.00 42.93 4.85
2964 3029 1.269448 GGCTGAGATCGTCTCCAGATC 59.731 57.143 11.01 0.00 42.73 2.75
3105 3170 5.008019 GTGCCTGTGATTTTCGTATCATCAT 59.992 40.000 0.00 0.00 36.94 2.45
3109 3174 8.128582 GCCTGTGATTTTCGTATCATCATTAAA 58.871 33.333 0.00 0.00 36.94 1.52
3154 3219 5.887598 TGAAGTTCTGAACATGGATAATGGG 59.112 40.000 21.50 0.00 40.94 4.00
3155 3220 4.796606 AGTTCTGAACATGGATAATGGGG 58.203 43.478 21.50 0.00 40.94 4.96
3156 3221 4.478317 AGTTCTGAACATGGATAATGGGGA 59.522 41.667 21.50 0.00 40.94 4.81
3157 3222 5.044179 AGTTCTGAACATGGATAATGGGGAA 60.044 40.000 21.50 0.00 40.94 3.97
3158 3223 5.464588 TCTGAACATGGATAATGGGGAAA 57.535 39.130 0.00 0.00 40.94 3.13
3159 3224 6.029492 TCTGAACATGGATAATGGGGAAAT 57.971 37.500 0.00 0.00 40.94 2.17
3160 3225 7.160457 TCTGAACATGGATAATGGGGAAATA 57.840 36.000 0.00 0.00 40.94 1.40
3161 3226 7.590907 TCTGAACATGGATAATGGGGAAATAA 58.409 34.615 0.00 0.00 40.94 1.40
3162 3227 8.233820 TCTGAACATGGATAATGGGGAAATAAT 58.766 33.333 0.00 0.00 40.94 1.28
3163 3228 8.192743 TGAACATGGATAATGGGGAAATAATG 57.807 34.615 0.00 0.00 40.94 1.90
3164 3229 7.235193 TGAACATGGATAATGGGGAAATAATGG 59.765 37.037 0.00 0.00 40.94 3.16
3170 3235 6.436218 GGATAATGGGGAAATAATGGTACCAC 59.564 42.308 19.09 2.64 0.00 4.16
3371 3436 6.757010 GTGATGAAGGAGAAACGCTTATCTTA 59.243 38.462 0.00 0.00 0.00 2.10
3492 3562 3.350219 TGCAAGTTAATCTGGTCCCTC 57.650 47.619 0.00 0.00 0.00 4.30
3637 3708 6.223120 AGTTATTCAAATGAAAGGTTGTGGC 58.777 36.000 0.00 0.00 37.61 5.01
3819 3891 1.340889 TGTGGAAGCATGCCTTTTGAC 59.659 47.619 15.66 4.69 31.46 3.18
3820 3892 1.615392 GTGGAAGCATGCCTTTTGACT 59.385 47.619 15.66 0.00 31.46 3.41
3896 3968 9.846248 ATTACTCTTCATTAAACTGTTGAATGC 57.154 29.630 21.05 0.00 31.86 3.56
3915 3987 4.826274 TGCTGCTATCCTGAAGTAAGTT 57.174 40.909 0.00 0.00 0.00 2.66
3930 4002 3.805971 AGTAAGTTCGTTTTGACCCTTCG 59.194 43.478 0.00 0.00 0.00 3.79
3936 4008 3.207778 TCGTTTTGACCCTTCGACAAAT 58.792 40.909 0.00 0.00 34.33 2.32
3939 4011 4.449743 CGTTTTGACCCTTCGACAAATAGA 59.550 41.667 0.00 0.00 34.33 1.98
3940 4012 5.389516 CGTTTTGACCCTTCGACAAATAGAG 60.390 44.000 0.00 0.00 34.33 2.43
3942 4014 4.884668 TGACCCTTCGACAAATAGAGTT 57.115 40.909 0.00 0.00 0.00 3.01
3944 4016 4.994852 TGACCCTTCGACAAATAGAGTTTG 59.005 41.667 0.00 0.00 35.64 2.93
3945 4017 4.969484 ACCCTTCGACAAATAGAGTTTGT 58.031 39.130 5.91 5.91 44.43 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.526115 TCGTGAGTTGATAGAAACGTCTTT 58.474 37.500 0.00 0.00 35.12 2.52
1 2 5.117355 TCGTGAGTTGATAGAAACGTCTT 57.883 39.130 0.00 0.00 35.12 3.01
2 3 4.761235 TCGTGAGTTGATAGAAACGTCT 57.239 40.909 0.00 0.00 37.95 4.18
5 6 4.029198 CGACTTCGTGAGTTGATAGAAACG 59.971 45.833 3.73 0.00 41.59 3.60
6 7 5.423097 CGACTTCGTGAGTTGATAGAAAC 57.577 43.478 3.73 0.00 41.59 2.78
21 22 2.905260 GTCACAACTTGACGACTTCG 57.095 50.000 0.00 0.00 45.33 3.79
43 44 6.712241 ACACAACATCTTAGATTGACGAAG 57.288 37.500 2.97 0.00 33.56 3.79
44 45 6.073276 CCAACACAACATCTTAGATTGACGAA 60.073 38.462 2.97 0.00 0.00 3.85
45 46 5.408299 CCAACACAACATCTTAGATTGACGA 59.592 40.000 2.97 0.00 0.00 4.20
46 47 5.621422 CCAACACAACATCTTAGATTGACG 58.379 41.667 2.97 0.00 0.00 4.35
47 48 5.182001 AGCCAACACAACATCTTAGATTGAC 59.818 40.000 2.97 0.00 0.00 3.18
48 49 5.316167 AGCCAACACAACATCTTAGATTGA 58.684 37.500 2.97 0.00 0.00 2.57
49 50 5.181811 TGAGCCAACACAACATCTTAGATTG 59.818 40.000 0.00 0.00 0.00 2.67
50 51 5.316167 TGAGCCAACACAACATCTTAGATT 58.684 37.500 0.00 0.00 0.00 2.40
51 52 4.910195 TGAGCCAACACAACATCTTAGAT 58.090 39.130 0.00 0.00 0.00 1.98
52 53 4.350368 TGAGCCAACACAACATCTTAGA 57.650 40.909 0.00 0.00 0.00 2.10
53 54 5.633830 ATTGAGCCAACACAACATCTTAG 57.366 39.130 0.00 0.00 0.00 2.18
54 55 7.701539 AATATTGAGCCAACACAACATCTTA 57.298 32.000 0.00 0.00 0.00 2.10
55 56 6.594788 AATATTGAGCCAACACAACATCTT 57.405 33.333 0.00 0.00 0.00 2.40
56 57 6.209192 TGAAATATTGAGCCAACACAACATCT 59.791 34.615 0.00 0.00 0.00 2.90
57 58 6.389091 TGAAATATTGAGCCAACACAACATC 58.611 36.000 0.00 0.00 0.00 3.06
58 59 6.209192 TCTGAAATATTGAGCCAACACAACAT 59.791 34.615 0.00 0.00 0.00 2.71
59 60 5.534278 TCTGAAATATTGAGCCAACACAACA 59.466 36.000 0.00 0.00 0.00 3.33
60 61 6.012658 TCTGAAATATTGAGCCAACACAAC 57.987 37.500 0.00 0.00 0.00 3.32
61 62 5.769662 ACTCTGAAATATTGAGCCAACACAA 59.230 36.000 2.09 0.00 0.00 3.33
62 63 5.181811 CACTCTGAAATATTGAGCCAACACA 59.818 40.000 2.09 0.00 0.00 3.72
63 64 5.182001 ACACTCTGAAATATTGAGCCAACAC 59.818 40.000 2.09 0.00 0.00 3.32
64 65 5.181811 CACACTCTGAAATATTGAGCCAACA 59.818 40.000 2.09 0.00 0.00 3.33
65 66 5.634896 CACACTCTGAAATATTGAGCCAAC 58.365 41.667 2.09 0.00 0.00 3.77
66 67 4.156556 GCACACTCTGAAATATTGAGCCAA 59.843 41.667 2.09 0.00 0.00 4.52
67 68 3.691118 GCACACTCTGAAATATTGAGCCA 59.309 43.478 2.09 0.00 0.00 4.75
68 69 3.242543 CGCACACTCTGAAATATTGAGCC 60.243 47.826 2.09 0.00 0.00 4.70
69 70 3.372206 ACGCACACTCTGAAATATTGAGC 59.628 43.478 2.09 0.00 0.00 4.26
70 71 5.275927 CGTACGCACACTCTGAAATATTGAG 60.276 44.000 0.52 0.00 0.00 3.02
71 72 4.561213 CGTACGCACACTCTGAAATATTGA 59.439 41.667 0.52 0.00 0.00 2.57
72 73 4.326278 ACGTACGCACACTCTGAAATATTG 59.674 41.667 16.72 0.00 0.00 1.90
73 74 4.491676 ACGTACGCACACTCTGAAATATT 58.508 39.130 16.72 0.00 0.00 1.28
74 75 4.106029 ACGTACGCACACTCTGAAATAT 57.894 40.909 16.72 0.00 0.00 1.28
75 76 3.564235 ACGTACGCACACTCTGAAATA 57.436 42.857 16.72 0.00 0.00 1.40
76 77 2.433868 ACGTACGCACACTCTGAAAT 57.566 45.000 16.72 0.00 0.00 2.17
77 78 3.239254 CATACGTACGCACACTCTGAAA 58.761 45.455 16.72 0.00 0.00 2.69
78 79 2.227149 ACATACGTACGCACACTCTGAA 59.773 45.455 16.72 0.00 0.00 3.02
79 80 1.808343 ACATACGTACGCACACTCTGA 59.192 47.619 16.72 0.00 0.00 3.27
80 81 2.257974 ACATACGTACGCACACTCTG 57.742 50.000 16.72 0.00 0.00 3.35
81 82 2.227149 TGAACATACGTACGCACACTCT 59.773 45.455 16.72 0.00 0.00 3.24
82 83 2.587956 TGAACATACGTACGCACACTC 58.412 47.619 16.72 7.69 0.00 3.51
83 84 2.227149 TCTGAACATACGTACGCACACT 59.773 45.455 16.72 0.00 0.00 3.55
84 85 2.587956 TCTGAACATACGTACGCACAC 58.412 47.619 16.72 3.13 0.00 3.82
85 86 2.485038 TCTCTGAACATACGTACGCACA 59.515 45.455 16.72 0.58 0.00 4.57
86 87 3.099362 CTCTCTGAACATACGTACGCAC 58.901 50.000 16.72 1.32 0.00 5.34
87 88 2.745821 ACTCTCTGAACATACGTACGCA 59.254 45.455 16.72 1.76 0.00 5.24
88 89 3.402058 ACTCTCTGAACATACGTACGC 57.598 47.619 16.72 0.00 0.00 4.42
89 90 4.503471 CGTACTCTCTGAACATACGTACG 58.497 47.826 15.01 15.01 41.40 3.67
90 91 4.270102 GCGTACTCTCTGAACATACGTAC 58.730 47.826 0.00 0.00 40.49 3.67
91 92 3.310774 GGCGTACTCTCTGAACATACGTA 59.689 47.826 0.00 0.00 40.49 3.57
92 93 2.097142 GGCGTACTCTCTGAACATACGT 59.903 50.000 12.76 0.00 40.49 3.57
93 94 2.096980 TGGCGTACTCTCTGAACATACG 59.903 50.000 8.90 8.90 41.13 3.06
94 95 3.777465 TGGCGTACTCTCTGAACATAC 57.223 47.619 0.00 0.00 0.00 2.39
95 96 3.951680 TCATGGCGTACTCTCTGAACATA 59.048 43.478 0.00 0.00 0.00 2.29
96 97 2.760650 TCATGGCGTACTCTCTGAACAT 59.239 45.455 0.00 0.00 0.00 2.71
97 98 2.167662 TCATGGCGTACTCTCTGAACA 58.832 47.619 0.00 0.00 0.00 3.18
98 99 2.941453 TCATGGCGTACTCTCTGAAC 57.059 50.000 0.00 0.00 0.00 3.18
99 100 2.101415 CCATCATGGCGTACTCTCTGAA 59.899 50.000 0.00 0.00 0.00 3.02
100 101 1.683385 CCATCATGGCGTACTCTCTGA 59.317 52.381 0.00 0.00 0.00 3.27
101 102 1.410517 ACCATCATGGCGTACTCTCTG 59.589 52.381 2.52 0.00 42.67 3.35
102 103 1.781786 ACCATCATGGCGTACTCTCT 58.218 50.000 2.52 0.00 42.67 3.10
103 104 2.604046 AACCATCATGGCGTACTCTC 57.396 50.000 2.52 0.00 42.67 3.20
104 105 2.738643 CGAAACCATCATGGCGTACTCT 60.739 50.000 2.52 0.00 42.67 3.24
105 106 1.593006 CGAAACCATCATGGCGTACTC 59.407 52.381 2.52 0.00 42.67 2.59
106 107 1.651987 CGAAACCATCATGGCGTACT 58.348 50.000 2.52 0.00 42.67 2.73
107 108 0.655733 CCGAAACCATCATGGCGTAC 59.344 55.000 2.52 0.00 42.67 3.67
108 109 0.537653 TCCGAAACCATCATGGCGTA 59.462 50.000 2.52 0.00 42.67 4.42
109 110 0.322098 TTCCGAAACCATCATGGCGT 60.322 50.000 2.52 0.00 42.67 5.68
110 111 0.378257 CTTCCGAAACCATCATGGCG 59.622 55.000 2.52 0.00 42.67 5.69
111 112 1.133025 CACTTCCGAAACCATCATGGC 59.867 52.381 2.52 0.00 42.67 4.40
112 113 2.710377 TCACTTCCGAAACCATCATGG 58.290 47.619 0.54 0.54 45.02 3.66
113 114 3.426695 GCTTCACTTCCGAAACCATCATG 60.427 47.826 0.00 0.00 0.00 3.07
114 115 2.749621 GCTTCACTTCCGAAACCATCAT 59.250 45.455 0.00 0.00 0.00 2.45
115 116 2.151202 GCTTCACTTCCGAAACCATCA 58.849 47.619 0.00 0.00 0.00 3.07
116 117 1.128692 CGCTTCACTTCCGAAACCATC 59.871 52.381 0.00 0.00 0.00 3.51
117 118 1.156736 CGCTTCACTTCCGAAACCAT 58.843 50.000 0.00 0.00 0.00 3.55
118 119 0.179067 ACGCTTCACTTCCGAAACCA 60.179 50.000 0.00 0.00 0.00 3.67
119 120 0.511653 GACGCTTCACTTCCGAAACC 59.488 55.000 0.00 0.00 0.00 3.27
120 121 1.499049 AGACGCTTCACTTCCGAAAC 58.501 50.000 0.00 0.00 0.00 2.78
121 122 2.234300 AAGACGCTTCACTTCCGAAA 57.766 45.000 0.00 0.00 0.00 3.46
122 123 3.057104 TCATAAGACGCTTCACTTCCGAA 60.057 43.478 0.00 0.00 0.00 4.30
123 124 2.490509 TCATAAGACGCTTCACTTCCGA 59.509 45.455 0.00 0.00 0.00 4.55
124 125 2.854777 CTCATAAGACGCTTCACTTCCG 59.145 50.000 0.00 0.00 0.00 4.30
125 126 3.614616 CACTCATAAGACGCTTCACTTCC 59.385 47.826 0.00 0.00 0.00 3.46
126 127 4.486090 TCACTCATAAGACGCTTCACTTC 58.514 43.478 0.00 0.00 0.00 3.01
127 128 4.521130 TCACTCATAAGACGCTTCACTT 57.479 40.909 0.00 0.00 0.00 3.16
128 129 4.521130 TTCACTCATAAGACGCTTCACT 57.479 40.909 0.00 0.00 0.00 3.41
129 130 4.092091 CCTTTCACTCATAAGACGCTTCAC 59.908 45.833 0.00 0.00 0.00 3.18
130 131 4.245660 CCTTTCACTCATAAGACGCTTCA 58.754 43.478 0.00 0.00 0.00 3.02
131 132 3.619038 CCCTTTCACTCATAAGACGCTTC 59.381 47.826 0.00 0.00 0.00 3.86
132 133 3.260884 TCCCTTTCACTCATAAGACGCTT 59.739 43.478 0.00 0.00 0.00 4.68
133 134 2.832129 TCCCTTTCACTCATAAGACGCT 59.168 45.455 0.00 0.00 0.00 5.07
134 135 3.190874 CTCCCTTTCACTCATAAGACGC 58.809 50.000 0.00 0.00 0.00 5.19
135 136 4.177026 CACTCCCTTTCACTCATAAGACG 58.823 47.826 0.00 0.00 0.00 4.18
136 137 5.153950 ACACTCCCTTTCACTCATAAGAC 57.846 43.478 0.00 0.00 0.00 3.01
137 138 4.082190 CGACACTCCCTTTCACTCATAAGA 60.082 45.833 0.00 0.00 0.00 2.10
138 139 4.177026 CGACACTCCCTTTCACTCATAAG 58.823 47.826 0.00 0.00 0.00 1.73
139 140 3.576982 ACGACACTCCCTTTCACTCATAA 59.423 43.478 0.00 0.00 0.00 1.90
140 141 3.162666 ACGACACTCCCTTTCACTCATA 58.837 45.455 0.00 0.00 0.00 2.15
141 142 1.971357 ACGACACTCCCTTTCACTCAT 59.029 47.619 0.00 0.00 0.00 2.90
142 143 1.410004 ACGACACTCCCTTTCACTCA 58.590 50.000 0.00 0.00 0.00 3.41
143 144 2.528041 AACGACACTCCCTTTCACTC 57.472 50.000 0.00 0.00 0.00 3.51
144 145 2.943033 CAAAACGACACTCCCTTTCACT 59.057 45.455 0.00 0.00 0.00 3.41
145 146 2.681344 ACAAAACGACACTCCCTTTCAC 59.319 45.455 0.00 0.00 0.00 3.18
146 147 2.993937 ACAAAACGACACTCCCTTTCA 58.006 42.857 0.00 0.00 0.00 2.69
147 148 3.375922 TGAACAAAACGACACTCCCTTTC 59.624 43.478 0.00 0.00 0.00 2.62
148 149 3.349022 TGAACAAAACGACACTCCCTTT 58.651 40.909 0.00 0.00 0.00 3.11
149 150 2.993937 TGAACAAAACGACACTCCCTT 58.006 42.857 0.00 0.00 0.00 3.95
150 151 2.702592 TGAACAAAACGACACTCCCT 57.297 45.000 0.00 0.00 0.00 4.20
151 152 5.622770 AATATGAACAAAACGACACTCCC 57.377 39.130 0.00 0.00 0.00 4.30
152 153 6.899114 AGAAATATGAACAAAACGACACTCC 58.101 36.000 0.00 0.00 0.00 3.85
153 154 6.732392 CGAGAAATATGAACAAAACGACACTC 59.268 38.462 0.00 0.00 0.00 3.51
154 155 6.422701 TCGAGAAATATGAACAAAACGACACT 59.577 34.615 0.00 0.00 0.00 3.55
155 156 6.586751 TCGAGAAATATGAACAAAACGACAC 58.413 36.000 0.00 0.00 0.00 3.67
156 157 6.643360 TCTCGAGAAATATGAACAAAACGACA 59.357 34.615 14.01 0.00 0.00 4.35
157 158 7.045725 TCTCGAGAAATATGAACAAAACGAC 57.954 36.000 14.01 0.00 0.00 4.34
158 159 6.183360 GCTCTCGAGAAATATGAACAAAACGA 60.183 38.462 17.36 0.00 0.00 3.85
159 160 5.954349 GCTCTCGAGAAATATGAACAAAACG 59.046 40.000 17.36 0.00 0.00 3.60
160 161 6.831769 TGCTCTCGAGAAATATGAACAAAAC 58.168 36.000 17.36 0.00 0.00 2.43
161 162 6.873605 TCTGCTCTCGAGAAATATGAACAAAA 59.126 34.615 17.36 0.00 0.00 2.44
162 163 6.398095 TCTGCTCTCGAGAAATATGAACAAA 58.602 36.000 17.36 0.00 0.00 2.83
163 164 5.965922 TCTGCTCTCGAGAAATATGAACAA 58.034 37.500 17.36 0.00 0.00 2.83
164 165 5.582689 TCTGCTCTCGAGAAATATGAACA 57.417 39.130 17.36 4.15 0.00 3.18
165 166 6.893958 TTTCTGCTCTCGAGAAATATGAAC 57.106 37.500 17.36 0.00 35.07 3.18
166 167 7.905604 TTTTTCTGCTCTCGAGAAATATGAA 57.094 32.000 17.36 12.84 38.81 2.57
167 168 7.550551 ACATTTTTCTGCTCTCGAGAAATATGA 59.449 33.333 22.83 13.26 43.89 2.15
168 169 7.692088 ACATTTTTCTGCTCTCGAGAAATATG 58.308 34.615 17.36 17.79 45.15 1.78
169 170 7.856145 ACATTTTTCTGCTCTCGAGAAATAT 57.144 32.000 17.36 5.37 38.81 1.28
170 171 8.771920 TTACATTTTTCTGCTCTCGAGAAATA 57.228 30.769 17.36 3.14 38.81 1.40
171 172 7.389053 ACTTACATTTTTCTGCTCTCGAGAAAT 59.611 33.333 17.36 8.42 38.81 2.17
172 173 6.706270 ACTTACATTTTTCTGCTCTCGAGAAA 59.294 34.615 17.36 6.25 37.60 2.52
173 174 6.223852 ACTTACATTTTTCTGCTCTCGAGAA 58.776 36.000 17.36 1.10 0.00 2.87
174 175 5.784177 ACTTACATTTTTCTGCTCTCGAGA 58.216 37.500 15.70 15.70 0.00 4.04
175 176 5.635280 TGACTTACATTTTTCTGCTCTCGAG 59.365 40.000 5.93 5.93 0.00 4.04
176 177 5.538118 TGACTTACATTTTTCTGCTCTCGA 58.462 37.500 0.00 0.00 0.00 4.04
177 178 5.845985 TGACTTACATTTTTCTGCTCTCG 57.154 39.130 0.00 0.00 0.00 4.04
178 179 7.020010 CACATGACTTACATTTTTCTGCTCTC 58.980 38.462 0.00 0.00 37.07 3.20
179 180 6.488006 ACACATGACTTACATTTTTCTGCTCT 59.512 34.615 0.00 0.00 37.07 4.09
180 181 6.672147 ACACATGACTTACATTTTTCTGCTC 58.328 36.000 0.00 0.00 37.07 4.26
181 182 6.639632 ACACATGACTTACATTTTTCTGCT 57.360 33.333 0.00 0.00 37.07 4.24
182 183 6.144402 CCAACACATGACTTACATTTTTCTGC 59.856 38.462 0.00 0.00 37.07 4.26
183 184 6.144402 GCCAACACATGACTTACATTTTTCTG 59.856 38.462 0.00 0.00 37.07 3.02
184 185 6.040842 AGCCAACACATGACTTACATTTTTCT 59.959 34.615 0.00 0.00 37.07 2.52
185 186 6.215845 AGCCAACACATGACTTACATTTTTC 58.784 36.000 0.00 0.00 37.07 2.29
186 187 6.160576 AGCCAACACATGACTTACATTTTT 57.839 33.333 0.00 0.00 37.07 1.94
187 188 5.789643 AGCCAACACATGACTTACATTTT 57.210 34.783 0.00 0.00 37.07 1.82
188 189 6.490040 AGTTAGCCAACACATGACTTACATTT 59.510 34.615 0.00 0.00 35.63 2.32
189 190 6.003950 AGTTAGCCAACACATGACTTACATT 58.996 36.000 0.00 0.00 35.63 2.71
190 191 5.560724 AGTTAGCCAACACATGACTTACAT 58.439 37.500 0.00 0.00 37.09 2.29
191 192 4.968259 AGTTAGCCAACACATGACTTACA 58.032 39.130 0.00 0.00 37.10 2.41
192 193 5.941948 AAGTTAGCCAACACATGACTTAC 57.058 39.130 0.00 0.00 37.10 2.34
193 194 5.240623 CCAAAGTTAGCCAACACATGACTTA 59.759 40.000 0.00 0.00 37.10 2.24
194 195 4.037923 CCAAAGTTAGCCAACACATGACTT 59.962 41.667 0.00 0.00 37.10 3.01
195 196 3.569701 CCAAAGTTAGCCAACACATGACT 59.430 43.478 0.00 0.00 37.10 3.41
196 197 3.568007 TCCAAAGTTAGCCAACACATGAC 59.432 43.478 0.00 0.00 37.10 3.06
197 198 3.826524 TCCAAAGTTAGCCAACACATGA 58.173 40.909 0.00 0.00 37.10 3.07
198 199 4.278170 TCTTCCAAAGTTAGCCAACACATG 59.722 41.667 0.00 0.00 37.10 3.21
199 200 4.469657 TCTTCCAAAGTTAGCCAACACAT 58.530 39.130 0.00 0.00 37.10 3.21
200 201 3.892284 TCTTCCAAAGTTAGCCAACACA 58.108 40.909 0.00 0.00 37.10 3.72
201 202 4.607955 GTTCTTCCAAAGTTAGCCAACAC 58.392 43.478 0.00 0.00 37.10 3.32
202 203 3.314080 CGTTCTTCCAAAGTTAGCCAACA 59.686 43.478 0.00 0.00 37.10 3.33
203 204 3.304458 CCGTTCTTCCAAAGTTAGCCAAC 60.304 47.826 0.00 0.00 34.67 3.77
204 205 2.882137 CCGTTCTTCCAAAGTTAGCCAA 59.118 45.455 0.00 0.00 0.00 4.52
205 206 2.105134 TCCGTTCTTCCAAAGTTAGCCA 59.895 45.455 0.00 0.00 0.00 4.75
206 207 2.774687 TCCGTTCTTCCAAAGTTAGCC 58.225 47.619 0.00 0.00 0.00 3.93
207 208 4.062991 TCTTCCGTTCTTCCAAAGTTAGC 58.937 43.478 0.00 0.00 0.00 3.09
208 209 4.451435 GGTCTTCCGTTCTTCCAAAGTTAG 59.549 45.833 0.00 0.00 0.00 2.34
209 210 4.383173 GGTCTTCCGTTCTTCCAAAGTTA 58.617 43.478 0.00 0.00 0.00 2.24
210 211 3.211865 GGTCTTCCGTTCTTCCAAAGTT 58.788 45.455 0.00 0.00 0.00 2.66
211 212 2.847441 GGTCTTCCGTTCTTCCAAAGT 58.153 47.619 0.00 0.00 0.00 2.66
229 230 1.004511 AGAGCTAGACCACAGTACGGT 59.995 52.381 0.00 0.00 40.30 4.83
230 231 1.402259 CAGAGCTAGACCACAGTACGG 59.598 57.143 0.00 0.00 0.00 4.02
231 232 1.202200 GCAGAGCTAGACCACAGTACG 60.202 57.143 0.00 0.00 0.00 3.67
232 233 2.096248 AGCAGAGCTAGACCACAGTAC 58.904 52.381 0.00 0.00 36.99 2.73
233 234 2.370349 GAGCAGAGCTAGACCACAGTA 58.630 52.381 0.00 0.00 39.88 2.74
234 235 1.181786 GAGCAGAGCTAGACCACAGT 58.818 55.000 0.00 0.00 39.88 3.55
235 236 0.459489 GGAGCAGAGCTAGACCACAG 59.541 60.000 0.00 0.00 39.88 3.66
236 237 1.315981 CGGAGCAGAGCTAGACCACA 61.316 60.000 0.00 0.00 39.88 4.17
237 238 1.435515 CGGAGCAGAGCTAGACCAC 59.564 63.158 0.00 0.00 39.88 4.16
238 239 1.754621 CCGGAGCAGAGCTAGACCA 60.755 63.158 0.00 0.00 39.88 4.02
239 240 3.124686 CCGGAGCAGAGCTAGACC 58.875 66.667 0.00 0.00 39.88 3.85
240 241 2.415426 GCCGGAGCAGAGCTAGAC 59.585 66.667 5.05 0.00 39.88 2.59
241 242 2.835431 GGCCGGAGCAGAGCTAGA 60.835 66.667 5.05 0.00 39.88 2.43
242 243 3.922640 GGGCCGGAGCAGAGCTAG 61.923 72.222 5.05 0.00 39.88 3.42
243 244 4.777854 TGGGCCGGAGCAGAGCTA 62.778 66.667 5.05 0.00 39.88 3.32
245 246 4.722700 TTTGGGCCGGAGCAGAGC 62.723 66.667 5.05 0.00 42.56 4.09
246 247 1.603455 TTTTTGGGCCGGAGCAGAG 60.603 57.895 5.05 0.00 42.56 3.35
247 248 2.518426 TTTTTGGGCCGGAGCAGA 59.482 55.556 5.05 0.00 42.56 4.26
261 262 7.639378 TCCTTACACAAGCTAGGGATATTTTT 58.361 34.615 0.00 0.00 0.00 1.94
262 263 7.208064 TCCTTACACAAGCTAGGGATATTTT 57.792 36.000 0.00 0.00 0.00 1.82
263 264 6.183361 CCTCCTTACACAAGCTAGGGATATTT 60.183 42.308 0.00 0.00 33.13 1.40
264 265 5.308237 CCTCCTTACACAAGCTAGGGATATT 59.692 44.000 0.00 0.00 33.13 1.28
265 266 4.841246 CCTCCTTACACAAGCTAGGGATAT 59.159 45.833 0.00 0.00 33.13 1.63
266 267 4.223953 CCTCCTTACACAAGCTAGGGATA 58.776 47.826 0.00 0.00 33.13 2.59
267 268 3.041946 CCTCCTTACACAAGCTAGGGAT 58.958 50.000 0.00 0.00 33.13 3.85
268 269 2.225547 ACCTCCTTACACAAGCTAGGGA 60.226 50.000 0.00 0.00 37.56 4.20
269 270 2.168728 GACCTCCTTACACAAGCTAGGG 59.831 54.545 0.00 0.00 37.56 3.53
270 271 2.168728 GGACCTCCTTACACAAGCTAGG 59.831 54.545 0.00 0.00 38.47 3.02
271 272 3.100671 AGGACCTCCTTACACAAGCTAG 58.899 50.000 0.00 0.00 46.09 3.42
272 273 3.185880 AGGACCTCCTTACACAAGCTA 57.814 47.619 0.00 0.00 46.09 3.32
273 274 2.031495 AGGACCTCCTTACACAAGCT 57.969 50.000 0.00 0.00 46.09 3.74
284 285 4.257731 CTCAAGAGCTAAAAAGGACCTCC 58.742 47.826 0.00 0.00 0.00 4.30
285 286 4.900684 ACTCAAGAGCTAAAAAGGACCTC 58.099 43.478 0.00 0.00 0.00 3.85
286 287 4.984146 ACTCAAGAGCTAAAAAGGACCT 57.016 40.909 0.00 0.00 0.00 3.85
287 288 7.822822 TGTATTACTCAAGAGCTAAAAAGGACC 59.177 37.037 0.00 0.00 0.00 4.46
288 289 8.773404 TGTATTACTCAAGAGCTAAAAAGGAC 57.227 34.615 0.00 0.00 0.00 3.85
289 290 9.787435 TTTGTATTACTCAAGAGCTAAAAAGGA 57.213 29.630 0.00 0.00 0.00 3.36
293 294 9.174166 GGGATTTGTATTACTCAAGAGCTAAAA 57.826 33.333 0.00 0.00 0.00 1.52
294 295 8.548877 AGGGATTTGTATTACTCAAGAGCTAAA 58.451 33.333 0.00 0.00 0.00 1.85
295 296 8.090788 AGGGATTTGTATTACTCAAGAGCTAA 57.909 34.615 0.00 0.00 0.00 3.09
296 297 7.676683 AGGGATTTGTATTACTCAAGAGCTA 57.323 36.000 0.00 0.00 0.00 3.32
297 298 6.567602 AGGGATTTGTATTACTCAAGAGCT 57.432 37.500 0.00 0.00 0.00 4.09
298 299 7.631717 AAAGGGATTTGTATTACTCAAGAGC 57.368 36.000 0.00 0.00 0.00 4.09
303 304 9.847224 GAGGATAAAAGGGATTTGTATTACTCA 57.153 33.333 0.00 0.00 32.27 3.41
304 305 8.989980 CGAGGATAAAAGGGATTTGTATTACTC 58.010 37.037 0.00 0.00 32.27 2.59
305 306 7.444487 GCGAGGATAAAAGGGATTTGTATTACT 59.556 37.037 0.00 0.00 32.27 2.24
306 307 7.227910 TGCGAGGATAAAAGGGATTTGTATTAC 59.772 37.037 0.00 0.00 32.27 1.89
307 308 7.284074 TGCGAGGATAAAAGGGATTTGTATTA 58.716 34.615 0.00 0.00 32.27 0.98
308 309 6.126409 TGCGAGGATAAAAGGGATTTGTATT 58.874 36.000 0.00 0.00 32.27 1.89
309 310 5.690865 TGCGAGGATAAAAGGGATTTGTAT 58.309 37.500 0.00 0.00 32.27 2.29
310 311 5.105567 TGCGAGGATAAAAGGGATTTGTA 57.894 39.130 0.00 0.00 32.27 2.41
311 312 3.963129 TGCGAGGATAAAAGGGATTTGT 58.037 40.909 0.00 0.00 32.27 2.83
312 313 4.981806 TTGCGAGGATAAAAGGGATTTG 57.018 40.909 0.00 0.00 32.27 2.32
313 314 5.993748 TTTTGCGAGGATAAAAGGGATTT 57.006 34.783 0.00 0.00 34.92 2.17
314 315 5.993748 TTTTTGCGAGGATAAAAGGGATT 57.006 34.783 0.00 0.00 0.00 3.01
335 336 0.727970 TACACGCACGCACACTTTTT 59.272 45.000 0.00 0.00 0.00 1.94
336 337 0.941542 ATACACGCACGCACACTTTT 59.058 45.000 0.00 0.00 0.00 2.27
337 338 0.234625 CATACACGCACGCACACTTT 59.765 50.000 0.00 0.00 0.00 2.66
338 339 0.878523 ACATACACGCACGCACACTT 60.879 50.000 0.00 0.00 0.00 3.16
339 340 1.300620 ACATACACGCACGCACACT 60.301 52.632 0.00 0.00 0.00 3.55
340 341 1.154672 CACATACACGCACGCACAC 60.155 57.895 0.00 0.00 0.00 3.82
341 342 0.876342 TTCACATACACGCACGCACA 60.876 50.000 0.00 0.00 0.00 4.57
342 343 0.450482 GTTCACATACACGCACGCAC 60.450 55.000 0.00 0.00 0.00 5.34
343 344 0.876342 TGTTCACATACACGCACGCA 60.876 50.000 0.00 0.00 0.00 5.24
344 345 0.442310 ATGTTCACATACACGCACGC 59.558 50.000 0.00 0.00 34.26 5.34
345 346 1.459209 ACATGTTCACATACACGCACG 59.541 47.619 0.00 0.00 34.26 5.34
352 353 5.557703 CGCAGATGATCACATGTTCACATAC 60.558 44.000 0.00 1.65 36.82 2.39
395 396 7.176165 ACAGAAGCCCTAAATAAAACCAGTTAC 59.824 37.037 0.00 0.00 0.00 2.50
400 401 4.698304 CGACAGAAGCCCTAAATAAAACCA 59.302 41.667 0.00 0.00 0.00 3.67
401 402 4.438336 GCGACAGAAGCCCTAAATAAAACC 60.438 45.833 0.00 0.00 0.00 3.27
407 408 0.462047 CCGCGACAGAAGCCCTAAAT 60.462 55.000 8.23 0.00 0.00 1.40
474 478 3.345808 GTGCTTTCGACTGGCGCA 61.346 61.111 10.83 0.00 40.61 6.09
508 512 4.077184 TCGGGTTGCTGCGTAGGG 62.077 66.667 1.76 0.00 0.00 3.53
520 524 1.002502 GCTTAACTTGGGCTCGGGT 60.003 57.895 0.00 0.00 0.00 5.28
526 530 0.678950 TTTGGCTGCTTAACTTGGGC 59.321 50.000 0.00 0.00 0.00 5.36
578 582 0.107831 TCAACGGGAAAGTGGAGGTG 59.892 55.000 0.00 0.00 0.00 4.00
582 586 2.178912 GTGATCAACGGGAAAGTGGA 57.821 50.000 0.00 0.00 0.00 4.02
604 608 3.814268 CAAAGTGCGGCGGGGATG 61.814 66.667 9.78 0.00 0.00 3.51
610 614 2.165362 TTTAGCGACAAAGTGCGGCG 62.165 55.000 0.51 0.51 35.87 6.46
669 673 1.154093 CGACGATGCGTAGGTGTGT 60.154 57.895 0.00 0.00 41.37 3.72
692 696 3.625897 CGCTGACAGGTGGGGACA 61.626 66.667 4.26 0.00 38.70 4.02
771 776 4.688966 GATGGGAGATCGGGCCGC 62.689 72.222 23.83 8.50 0.00 6.53
772 777 4.008933 GGATGGGAGATCGGGCCG 62.009 72.222 22.51 22.51 0.00 6.13
779 784 1.299629 AGAGGGGAAAGGATGGGAGAT 59.700 52.381 0.00 0.00 0.00 2.75
780 785 0.725133 AGAGGGGAAAGGATGGGAGA 59.275 55.000 0.00 0.00 0.00 3.71
851 856 4.382320 GTTGTGGGCGGCGGACTA 62.382 66.667 9.78 0.00 0.00 2.59
857 862 0.455464 GTAAATTCGTTGTGGGCGGC 60.455 55.000 0.00 0.00 0.00 6.53
901 906 2.158645 TGTAAATTGCGACGTGTGGATG 59.841 45.455 0.00 0.00 0.00 3.51
903 908 1.795872 CTGTAAATTGCGACGTGTGGA 59.204 47.619 0.00 0.00 0.00 4.02
905 910 1.591248 GCTGTAAATTGCGACGTGTG 58.409 50.000 0.00 0.00 0.00 3.82
907 912 0.518355 CGGCTGTAAATTGCGACGTG 60.518 55.000 0.00 0.00 0.00 4.49
1031 1038 2.444700 CTAGGGTTTGGTCACGCCGT 62.445 60.000 0.00 0.00 41.21 5.68
1106 1123 2.035155 TTCTCCTCGCCGTCCTCA 59.965 61.111 0.00 0.00 0.00 3.86
1264 1317 2.612251 CCCCTCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
1265 1318 3.773154 GCCCCTCCTCCTCCTCCT 61.773 72.222 0.00 0.00 0.00 3.69
1266 1319 4.890306 GGCCCCTCCTCCTCCTCC 62.890 77.778 0.00 0.00 0.00 4.30
1285 1341 3.996614 TCGACATCGAGTGCTCCA 58.003 55.556 0.00 0.00 44.22 3.86
2195 2260 1.007336 CGAAAACAGGGTCGAGGTCG 61.007 60.000 0.00 0.00 39.64 4.79
2579 2644 0.254178 TCAAGAAGATGGAGGCCAGC 59.746 55.000 5.01 0.00 40.67 4.85
2726 2791 2.100631 CGACATCACCTTCGCCCAC 61.101 63.158 0.00 0.00 0.00 4.61
2826 2891 2.419198 CGCCCGAATCTCCTCCAG 59.581 66.667 0.00 0.00 0.00 3.86
2846 2911 1.257750 TGATCACCCACTCGGACTGG 61.258 60.000 0.00 0.00 34.64 4.00
2927 2992 1.805254 CCTCGCAATCAAGCCCTTG 59.195 57.895 1.62 1.62 41.71 3.61
2942 3007 0.667993 CTGGAGACGATCTCAGCCTC 59.332 60.000 14.26 0.00 45.12 4.70
2964 3029 0.467384 ATGAACAGATCCTGCGGAGG 59.533 55.000 18.34 18.34 41.39 4.30
2976 3041 2.947652 CTGGGGTATGCTTGATGAACAG 59.052 50.000 0.00 0.00 0.00 3.16
3105 3170 3.472283 TCGGCCACAACAGTACTTTAA 57.528 42.857 2.24 0.00 0.00 1.52
3109 3174 3.031736 AGATATCGGCCACAACAGTACT 58.968 45.455 2.24 0.00 0.00 2.73
3154 3219 5.020795 ACCCAAAGTGGTACCATTATTTCC 58.979 41.667 19.72 2.77 36.67 3.13
3155 3220 6.599356 AACCCAAAGTGGTACCATTATTTC 57.401 37.500 19.72 3.59 37.76 2.17
3156 3221 6.555360 TCAAACCCAAAGTGGTACCATTATTT 59.445 34.615 19.72 16.07 37.76 1.40
3157 3222 6.078664 TCAAACCCAAAGTGGTACCATTATT 58.921 36.000 19.72 10.84 37.76 1.40
3158 3223 5.646215 TCAAACCCAAAGTGGTACCATTAT 58.354 37.500 19.72 4.53 37.76 1.28
3159 3224 5.063017 TCAAACCCAAAGTGGTACCATTA 57.937 39.130 19.72 0.00 37.76 1.90
3160 3225 3.917300 TCAAACCCAAAGTGGTACCATT 58.083 40.909 19.72 11.73 37.76 3.16
3161 3226 3.603965 TCAAACCCAAAGTGGTACCAT 57.396 42.857 19.72 0.00 37.76 3.55
3162 3227 3.226777 CATCAAACCCAAAGTGGTACCA 58.773 45.455 11.60 11.60 37.76 3.25
3163 3228 2.560981 CCATCAAACCCAAAGTGGTACC 59.439 50.000 4.43 4.43 37.76 3.34
3164 3229 3.005367 CACCATCAAACCCAAAGTGGTAC 59.995 47.826 0.00 0.00 37.84 3.34
3170 3235 3.312146 GCAAAACACCATCAAACCCAAAG 59.688 43.478 0.00 0.00 0.00 2.77
3371 3436 2.434428 CAAGCTTGGCAGATCTGACTT 58.566 47.619 28.52 17.00 39.96 3.01
3492 3562 3.055530 GGCATATCACACCCATAGGAGAG 60.056 52.174 0.00 0.00 36.73 3.20
3559 3630 9.956640 AGGGAAAATATCATTGCAAATTGTTAA 57.043 25.926 1.71 0.00 0.00 2.01
3560 3631 9.956640 AAGGGAAAATATCATTGCAAATTGTTA 57.043 25.926 1.71 0.00 0.00 2.41
3563 3634 8.495361 TGAAGGGAAAATATCATTGCAAATTG 57.505 30.769 1.71 0.00 0.00 2.32
3637 3708 5.712152 ATTTTCAAGAGTTGTGGCCTTAG 57.288 39.130 3.32 0.00 0.00 2.18
3759 3831 5.794894 ACTCCATTCAGAAATAAGTGTCGT 58.205 37.500 0.00 0.00 0.00 4.34
3777 3849 2.226330 ACAGCGCAAAATTGTACTCCA 58.774 42.857 11.47 0.00 0.00 3.86
3819 3891 4.013267 AGGAACACCAGTCATTCAAGAG 57.987 45.455 0.00 0.00 0.00 2.85
3820 3892 4.103153 AGAAGGAACACCAGTCATTCAAGA 59.897 41.667 2.21 0.00 0.00 3.02
3871 3943 9.066892 AGCATTCAACAGTTTAATGAAGAGTAA 57.933 29.630 20.07 0.00 36.59 2.24
3886 3958 3.538591 TCAGGATAGCAGCATTCAACAG 58.461 45.455 0.00 0.00 0.00 3.16
3896 3968 5.000012 ACGAACTTACTTCAGGATAGCAG 58.000 43.478 0.00 0.00 0.00 4.24
3915 3987 2.312722 TTGTCGAAGGGTCAAAACGA 57.687 45.000 0.00 0.00 0.00 3.85
3936 4008 9.871238 GAGGTATTCAGTAAATGACAAACTCTA 57.129 33.333 0.00 0.00 37.77 2.43
3939 4011 7.159372 ACGAGGTATTCAGTAAATGACAAACT 58.841 34.615 0.00 0.00 37.77 2.66
3940 4012 7.331193 AGACGAGGTATTCAGTAAATGACAAAC 59.669 37.037 0.00 0.00 37.77 2.93
3942 4014 6.811665 CAGACGAGGTATTCAGTAAATGACAA 59.188 38.462 0.00 0.00 37.77 3.18
3944 4016 6.253727 CACAGACGAGGTATTCAGTAAATGAC 59.746 42.308 0.00 0.00 37.77 3.06
3945 4017 6.071560 ACACAGACGAGGTATTCAGTAAATGA 60.072 38.462 0.00 0.00 35.62 2.57
3959 4032 3.116300 GCATATGTACACACAGACGAGG 58.884 50.000 0.00 0.00 38.30 4.63
3960 4033 3.793492 CAGCATATGTACACACAGACGAG 59.207 47.826 0.00 0.00 38.30 4.18
3961 4034 3.442273 TCAGCATATGTACACACAGACGA 59.558 43.478 0.00 0.00 38.30 4.20
4078 4154 3.258372 TCTTCACCTACTGTGGCACTAAG 59.742 47.826 19.83 11.28 45.48 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.