Multiple sequence alignment - TraesCS3A01G347500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G347500 chr3A 100.000 4119 0 0 1 4119 596512862 596516980 0.000000e+00 7607.0
1 TraesCS3A01G347500 chr3A 90.000 250 21 4 3176 3423 596546559 596546806 1.850000e-83 320.0
2 TraesCS3A01G347500 chr3A 93.000 200 14 0 3920 4119 538503660 538503461 4.030000e-75 292.0
3 TraesCS3A01G347500 chr3A 92.537 201 14 1 3914 4113 530269029 530269229 1.870000e-73 287.0
4 TraesCS3A01G347500 chr3A 82.412 199 26 7 3493 3690 596546910 596547100 9.160000e-37 165.0
5 TraesCS3A01G347500 chr3D 91.108 3936 165 60 1 3790 454507409 454511305 0.000000e+00 5158.0
6 TraesCS3A01G347500 chr3D 86.441 59 6 2 2688 2745 337974306 337974249 3.440000e-06 63.9
7 TraesCS3A01G347500 chr3B 92.996 3027 138 36 451 3423 597087393 597090399 0.000000e+00 4348.0
8 TraesCS3A01G347500 chr3B 92.081 442 19 7 10 438 597086909 597087347 3.520000e-170 608.0
9 TraesCS3A01G347500 chr3B 85.484 62 9 0 2577 2638 379172678 379172739 9.560000e-07 65.8
10 TraesCS3A01G347500 chr2A 93.500 200 12 1 3914 4113 437515304 437515502 3.110000e-76 296.0
11 TraesCS3A01G347500 chr2A 93.000 200 13 1 3914 4113 437523470 437523668 1.450000e-74 291.0
12 TraesCS3A01G347500 chr2A 92.500 200 14 1 3914 4113 437531644 437531842 6.740000e-73 285.0
13 TraesCS3A01G347500 chr2A 87.692 130 12 4 2641 2768 562984727 562984854 9.230000e-32 148.0
14 TraesCS3A01G347500 chr2A 97.917 48 1 0 2569 2616 4161467 4161514 2.640000e-12 84.2
15 TraesCS3A01G347500 chr1A 93.500 200 12 1 3914 4113 452663814 452664012 3.110000e-76 296.0
16 TraesCS3A01G347500 chr1A 89.140 221 19 4 1988 2206 493502007 493501790 1.890000e-68 270.0
17 TraesCS3A01G347500 chr1A 88.889 153 14 2 2493 2642 493501591 493501439 7.030000e-43 185.0
18 TraesCS3A01G347500 chr1A 86.331 139 19 0 2641 2779 493501339 493501201 7.130000e-33 152.0
19 TraesCS3A01G347500 chr4A 91.748 206 16 1 3914 4119 231608113 231607909 6.740000e-73 285.0
20 TraesCS3A01G347500 chr5A 92.040 201 16 0 3913 4113 82283932 82284132 2.420000e-72 283.0
21 TraesCS3A01G347500 chr5A 76.687 163 38 0 2004 2166 591443768 591443930 1.580000e-14 91.6
22 TraesCS3A01G347500 chr1D 89.862 217 19 3 3903 4119 469380576 469380363 4.060000e-70 276.0
23 TraesCS3A01G347500 chr1D 88.688 221 20 4 1988 2206 391862166 391862383 8.780000e-67 265.0
24 TraesCS3A01G347500 chr1D 90.667 150 11 2 2493 2639 391862582 391862731 3.250000e-46 196.0
25 TraesCS3A01G347500 chr1D 87.770 139 17 0 2641 2779 391862835 391862973 3.290000e-36 163.0
26 TraesCS3A01G347500 chr1B 88.688 221 20 4 1988 2206 530779787 530779570 8.780000e-67 265.0
27 TraesCS3A01G347500 chr1B 92.126 127 10 0 2516 2642 530779345 530779219 3.270000e-41 180.0
28 TraesCS3A01G347500 chr1B 87.050 139 18 0 2641 2779 530779119 530778981 1.530000e-34 158.0
29 TraesCS3A01G347500 chr2B 87.313 134 12 5 2638 2768 500590533 500590402 9.230000e-32 148.0
30 TraesCS3A01G347500 chr2B 97.917 48 1 0 2569 2616 5689055 5689008 2.640000e-12 84.2
31 TraesCS3A01G347500 chr2D 86.567 134 13 5 2638 2768 425216117 425215986 4.290000e-30 143.0
32 TraesCS3A01G347500 chr2D 97.917 48 1 0 2569 2616 5669239 5669286 2.640000e-12 84.2
33 TraesCS3A01G347500 chr5B 76.970 165 38 0 2002 2166 578540649 578540813 1.220000e-15 95.3
34 TraesCS3A01G347500 chr5D 76.364 165 39 0 2002 2166 472237771 472237935 5.670000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G347500 chr3A 596512862 596516980 4118 False 7607.000000 7607 100.000000 1 4119 1 chr3A.!!$F2 4118
1 TraesCS3A01G347500 chr3A 596546559 596547100 541 False 242.500000 320 86.206000 3176 3690 2 chr3A.!!$F3 514
2 TraesCS3A01G347500 chr3D 454507409 454511305 3896 False 5158.000000 5158 91.108000 1 3790 1 chr3D.!!$F1 3789
3 TraesCS3A01G347500 chr3B 597086909 597090399 3490 False 2478.000000 4348 92.538500 10 3423 2 chr3B.!!$F2 3413
4 TraesCS3A01G347500 chr1A 493501201 493502007 806 True 202.333333 270 88.120000 1988 2779 3 chr1A.!!$R1 791
5 TraesCS3A01G347500 chr1D 391862166 391862973 807 False 208.000000 265 89.041667 1988 2779 3 chr1D.!!$F1 791
6 TraesCS3A01G347500 chr1B 530778981 530779787 806 True 201.000000 265 89.288000 1988 2779 3 chr1B.!!$R1 791

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 190 0.033405 TGGGTCCGGGTTGAAACAAA 60.033 50.0 0.0 0.00 0.00 2.83 F
441 455 0.106015 ACAAAAGGCAGCCAAGGAGT 60.106 50.0 15.8 2.24 0.00 3.85 F
445 459 0.106015 AAGGCAGCCAAGGAGTTGTT 60.106 50.0 15.8 0.00 30.95 2.83 F
1308 1378 0.234106 GCGCCATGTCATCGATTGAG 59.766 55.0 0.0 0.00 34.17 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1273 1342 0.525455 GCGCCAACGGAATTCCATTC 60.525 55.000 24.09 3.71 40.57 2.67 R
2418 2547 0.449388 CCTCCAAGAATGCAACTCGC 59.551 55.000 0.00 0.00 42.89 5.03 R
2469 2598 1.827969 CACCGTCTCTCCTCCTGAAAT 59.172 52.381 0.00 0.00 0.00 2.17 R
3119 3362 0.716108 CCATTTCTGACACTCGTCGC 59.284 55.000 0.00 0.00 45.80 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 134 9.683069 CAAGTAGAATTATTTAACCCATGCATC 57.317 33.333 0.00 0.00 0.00 3.91
166 168 4.038080 GGCGCAACTTTGGGTCCG 62.038 66.667 10.83 0.00 42.44 4.79
178 190 0.033405 TGGGTCCGGGTTGAAACAAA 60.033 50.000 0.00 0.00 0.00 2.83
407 421 6.961554 CAGAGCAAGAACAAAAACGGATATAC 59.038 38.462 0.00 0.00 0.00 1.47
421 435 5.717119 ACGGATATACAACGAAGAACAACT 58.283 37.500 0.00 0.00 0.00 3.16
438 452 1.620822 ACTACAAAAGGCAGCCAAGG 58.379 50.000 15.80 2.29 0.00 3.61
440 454 1.815003 CTACAAAAGGCAGCCAAGGAG 59.185 52.381 15.80 2.04 0.00 3.69
441 455 0.106015 ACAAAAGGCAGCCAAGGAGT 60.106 50.000 15.80 2.24 0.00 3.85
442 456 1.043022 CAAAAGGCAGCCAAGGAGTT 58.957 50.000 15.80 0.00 0.00 3.01
443 457 1.043022 AAAAGGCAGCCAAGGAGTTG 58.957 50.000 15.80 0.00 0.00 3.16
445 459 0.106015 AAGGCAGCCAAGGAGTTGTT 60.106 50.000 15.80 0.00 30.95 2.83
446 460 0.538287 AGGCAGCCAAGGAGTTGTTC 60.538 55.000 15.80 0.00 30.95 3.18
447 461 0.538287 GGCAGCCAAGGAGTTGTTCT 60.538 55.000 6.55 0.00 30.95 3.01
449 463 1.268079 GCAGCCAAGGAGTTGTTCTTC 59.732 52.381 0.00 0.00 30.95 2.87
489 536 5.488341 ACATAGCTCCAAACAGTAAATCGT 58.512 37.500 0.00 0.00 0.00 3.73
832 880 1.937899 AGTCCACGGTCAAAGTTTTCG 59.062 47.619 0.00 0.00 0.00 3.46
970 1039 0.931202 CGCACGTCGTAACTCACACA 60.931 55.000 0.00 0.00 0.00 3.72
991 1060 1.553308 GCGCAATTTTGGATCAGAGC 58.447 50.000 0.30 0.00 0.00 4.09
1041 1110 1.728426 CGTGGAGACGTCGACCAAC 60.728 63.158 28.88 22.52 40.91 3.77
1050 1119 3.744719 TCGACCAACTCGAGGCCG 61.745 66.667 18.41 11.87 46.75 6.13
1264 1333 2.839486 CACCTCCAGTGTAAGCAAGA 57.161 50.000 0.00 0.00 41.93 3.02
1265 1334 3.126001 CACCTCCAGTGTAAGCAAGAA 57.874 47.619 0.00 0.00 41.93 2.52
1270 1339 1.225855 CAGTGTAAGCAAGAACGCCA 58.774 50.000 0.00 0.00 0.00 5.69
1271 1340 1.806542 CAGTGTAAGCAAGAACGCCAT 59.193 47.619 0.00 0.00 0.00 4.40
1272 1341 1.806542 AGTGTAAGCAAGAACGCCATG 59.193 47.619 0.00 0.00 0.00 3.66
1273 1342 1.135689 GTGTAAGCAAGAACGCCATGG 60.136 52.381 7.63 7.63 0.00 3.66
1274 1343 1.271108 TGTAAGCAAGAACGCCATGGA 60.271 47.619 18.40 0.00 0.00 3.41
1308 1378 0.234106 GCGCCATGTCATCGATTGAG 59.766 55.000 0.00 0.00 34.17 3.02
1337 1407 1.601914 GCTGATTCGCGGTTTTGGTTT 60.602 47.619 6.13 0.00 0.00 3.27
1536 1609 0.642291 CGACGACGACGACTAGCTTA 59.358 55.000 15.32 0.00 42.66 3.09
1551 1624 2.666862 TTACAGCCACCGGTTGCG 60.667 61.111 23.52 19.74 37.43 4.85
1593 1677 3.311110 ACCATGCGGTGTCCTCGT 61.311 61.111 0.00 0.00 46.79 4.18
1594 1678 2.509336 CCATGCGGTGTCCTCGTC 60.509 66.667 0.00 0.00 0.00 4.20
1595 1679 2.880879 CATGCGGTGTCCTCGTCG 60.881 66.667 0.00 0.00 0.00 5.12
1646 1730 5.198274 GCGCTAGAATACCATTTTTCTTCG 58.802 41.667 0.00 0.00 34.22 3.79
1756 1840 6.146184 CGTGATAGTGATTGATTAGCGGAAAT 59.854 38.462 0.00 0.00 0.00 2.17
2114 2201 1.700186 ACCAAGAAGAAGGTGGAGACC 59.300 52.381 0.00 0.00 43.52 3.85
2407 2531 2.417719 GTGAGCACCGATTCATATCCC 58.582 52.381 0.00 0.00 0.00 3.85
2415 2544 4.690748 CACCGATTCATATCCCATGTGTAC 59.309 45.833 0.00 0.00 0.00 2.90
2416 2545 4.346709 ACCGATTCATATCCCATGTGTACA 59.653 41.667 0.00 0.00 0.00 2.90
2836 3070 3.665675 GAGCACCGGCCACTACCTG 62.666 68.421 0.00 0.00 42.56 4.00
2905 3148 2.584608 GCCGGGACACAGCAGTAT 59.415 61.111 2.18 0.00 0.00 2.12
3119 3362 2.808919 TCCAGAACTCCCAGTACTGAG 58.191 52.381 24.68 16.32 34.73 3.35
3121 3364 1.135257 CAGAACTCCCAGTACTGAGCG 60.135 57.143 24.68 8.76 31.65 5.03
3156 3399 1.481683 GCAAACGACACGACGAGAC 59.518 57.895 0.00 0.00 37.03 3.36
3182 3431 7.272948 CGGAGCTTTATCCTGTAATACGTAATC 59.727 40.741 0.00 0.00 37.20 1.75
3223 3472 4.877282 ACACATTCGTTTATTTGTTGGGG 58.123 39.130 0.00 0.00 0.00 4.96
3256 3507 2.856000 AGGGCTGCACAGAAGGGT 60.856 61.111 4.01 0.00 0.00 4.34
3273 3525 1.069775 GGTCCCCCTTCCTTAACACA 58.930 55.000 0.00 0.00 0.00 3.72
3297 3549 8.953313 ACAACGGAGTAAAGAAAATATTTAGGG 58.047 33.333 0.01 0.00 45.00 3.53
3353 3605 4.094590 CAGTTTTGCTTTGCCATTGTTTCA 59.905 37.500 0.00 0.00 0.00 2.69
3359 3611 3.001533 GCTTTGCCATTGTTTCACACTTG 59.998 43.478 0.00 0.00 0.00 3.16
3475 3780 0.235144 CGATAGCGTACCAGACCTCG 59.765 60.000 0.00 0.00 0.00 4.63
3479 3784 0.182061 AGCGTACCAGACCTCGGATA 59.818 55.000 0.00 0.00 0.00 2.59
3484 3789 3.683822 CGTACCAGACCTCGGATATACTC 59.316 52.174 0.00 0.00 0.00 2.59
3486 3791 3.488363 ACCAGACCTCGGATATACTCAC 58.512 50.000 0.00 0.00 0.00 3.51
3532 3845 8.418662 AGTTATACACACTACAGACTGAACAAA 58.581 33.333 10.08 0.00 0.00 2.83
3537 3850 6.374333 ACACACTACAGACTGAACAAACAAAT 59.626 34.615 10.08 0.00 0.00 2.32
3538 3851 6.688385 CACACTACAGACTGAACAAACAAATG 59.312 38.462 10.08 0.00 0.00 2.32
3598 3913 6.150474 GTCCAGTTTATAAGCCTAAACTTGCA 59.850 38.462 11.81 0.00 45.26 4.08
3599 3914 6.150474 TCCAGTTTATAAGCCTAAACTTGCAC 59.850 38.462 11.81 0.00 45.26 4.57
3601 3916 6.151144 CAGTTTATAAGCCTAAACTTGCACCT 59.849 38.462 11.81 0.00 45.26 4.00
3605 3920 1.305930 GCCTAAACTTGCACCTCGGG 61.306 60.000 0.00 0.00 0.00 5.14
3634 3949 3.831323 TCAACCCTCAGCTTCAAAATCA 58.169 40.909 0.00 0.00 0.00 2.57
3647 3962 5.678107 GCTTCAAAATCAGTCATCCCACATC 60.678 44.000 0.00 0.00 0.00 3.06
3693 4008 3.679092 CCCCCATCCCCCGGTTTT 61.679 66.667 0.00 0.00 0.00 2.43
3699 4036 1.004979 CCATCCCCCGGTTTTGACTTA 59.995 52.381 0.00 0.00 0.00 2.24
3701 4038 2.572209 TCCCCCGGTTTTGACTTAAG 57.428 50.000 0.00 0.00 0.00 1.85
3727 4073 2.995574 ACTGCCGAGTTAGCCCGT 60.996 61.111 0.00 0.00 0.00 5.28
3728 4074 2.509336 CTGCCGAGTTAGCCCGTG 60.509 66.667 0.00 0.00 0.00 4.94
3730 4076 2.202756 GCCGAGTTAGCCCGTGAG 60.203 66.667 0.00 0.00 0.00 3.51
3753 4099 2.747446 CCAACTCCTTAATGTGGAACCG 59.253 50.000 0.00 0.00 34.36 4.44
3763 4109 0.324614 TGTGGAACCGCACAGATCAT 59.675 50.000 2.78 0.00 34.36 2.45
3784 4130 0.169672 CACCTCCATTGCTTCTTGCG 59.830 55.000 0.00 0.00 46.63 4.85
3790 4136 0.247576 CATTGCTTCTTGCGAGCTCG 60.248 55.000 31.37 31.37 46.63 5.03
3801 4147 3.749064 GAGCTCGCACTCACGGGA 61.749 66.667 0.00 0.00 34.72 5.14
3802 4148 3.282745 GAGCTCGCACTCACGGGAA 62.283 63.158 0.00 0.00 34.72 3.97
3803 4149 3.112709 GCTCGCACTCACGGGAAC 61.113 66.667 0.00 0.00 34.72 3.62
3819 4165 3.942130 GGAACCACTCCTTCCATTTTG 57.058 47.619 0.00 0.00 41.61 2.44
3820 4166 3.230976 GGAACCACTCCTTCCATTTTGT 58.769 45.455 0.00 0.00 41.61 2.83
3821 4167 3.255888 GGAACCACTCCTTCCATTTTGTC 59.744 47.826 0.00 0.00 41.61 3.18
3822 4168 2.876581 ACCACTCCTTCCATTTTGTCC 58.123 47.619 0.00 0.00 0.00 4.02
3823 4169 2.171003 CCACTCCTTCCATTTTGTCCC 58.829 52.381 0.00 0.00 0.00 4.46
3824 4170 2.171003 CACTCCTTCCATTTTGTCCCC 58.829 52.381 0.00 0.00 0.00 4.81
3825 4171 1.786441 ACTCCTTCCATTTTGTCCCCA 59.214 47.619 0.00 0.00 0.00 4.96
3826 4172 2.171003 CTCCTTCCATTTTGTCCCCAC 58.829 52.381 0.00 0.00 0.00 4.61
3827 4173 1.203125 TCCTTCCATTTTGTCCCCACC 60.203 52.381 0.00 0.00 0.00 4.61
3828 4174 1.266178 CTTCCATTTTGTCCCCACCC 58.734 55.000 0.00 0.00 0.00 4.61
3829 4175 0.563173 TTCCATTTTGTCCCCACCCA 59.437 50.000 0.00 0.00 0.00 4.51
3830 4176 0.563173 TCCATTTTGTCCCCACCCAA 59.437 50.000 0.00 0.00 0.00 4.12
3831 4177 1.062121 TCCATTTTGTCCCCACCCAAA 60.062 47.619 0.00 0.00 0.00 3.28
3832 4178 1.071542 CCATTTTGTCCCCACCCAAAC 59.928 52.381 0.00 0.00 30.74 2.93
3833 4179 1.765314 CATTTTGTCCCCACCCAAACA 59.235 47.619 0.00 0.00 30.74 2.83
3834 4180 1.196012 TTTTGTCCCCACCCAAACAC 58.804 50.000 0.00 0.00 30.74 3.32
3835 4181 0.688087 TTTGTCCCCACCCAAACACC 60.688 55.000 0.00 0.00 0.00 4.16
3836 4182 1.875422 TTGTCCCCACCCAAACACCA 61.875 55.000 0.00 0.00 0.00 4.17
3837 4183 1.830847 GTCCCCACCCAAACACCAC 60.831 63.158 0.00 0.00 0.00 4.16
3838 4184 2.523168 CCCCACCCAAACACCACC 60.523 66.667 0.00 0.00 0.00 4.61
3839 4185 2.606449 CCCACCCAAACACCACCT 59.394 61.111 0.00 0.00 0.00 4.00
3840 4186 1.075600 CCCACCCAAACACCACCTT 60.076 57.895 0.00 0.00 0.00 3.50
3841 4187 1.112916 CCCACCCAAACACCACCTTC 61.113 60.000 0.00 0.00 0.00 3.46
3842 4188 1.112916 CCACCCAAACACCACCTTCC 61.113 60.000 0.00 0.00 0.00 3.46
3843 4189 1.112916 CACCCAAACACCACCTTCCC 61.113 60.000 0.00 0.00 0.00 3.97
3844 4190 1.231641 CCCAAACACCACCTTCCCA 59.768 57.895 0.00 0.00 0.00 4.37
3845 4191 0.397816 CCCAAACACCACCTTCCCAA 60.398 55.000 0.00 0.00 0.00 4.12
3846 4192 0.750249 CCAAACACCACCTTCCCAAC 59.250 55.000 0.00 0.00 0.00 3.77
3847 4193 0.750249 CAAACACCACCTTCCCAACC 59.250 55.000 0.00 0.00 0.00 3.77
3848 4194 0.336737 AAACACCACCTTCCCAACCA 59.663 50.000 0.00 0.00 0.00 3.67
3849 4195 0.396556 AACACCACCTTCCCAACCAC 60.397 55.000 0.00 0.00 0.00 4.16
3850 4196 1.286305 ACACCACCTTCCCAACCACT 61.286 55.000 0.00 0.00 0.00 4.00
3851 4197 0.106217 CACCACCTTCCCAACCACTT 60.106 55.000 0.00 0.00 0.00 3.16
3852 4198 0.106217 ACCACCTTCCCAACCACTTG 60.106 55.000 0.00 0.00 0.00 3.16
3853 4199 0.184933 CCACCTTCCCAACCACTTGA 59.815 55.000 0.00 0.00 0.00 3.02
3854 4200 1.609208 CACCTTCCCAACCACTTGAG 58.391 55.000 0.00 0.00 0.00 3.02
3855 4201 0.478507 ACCTTCCCAACCACTTGAGG 59.521 55.000 0.00 0.00 0.00 3.86
3856 4202 0.478507 CCTTCCCAACCACTTGAGGT 59.521 55.000 0.00 0.00 45.91 3.85
3857 4203 1.609208 CTTCCCAACCACTTGAGGTG 58.391 55.000 0.00 0.00 42.25 4.00
3858 4204 0.923358 TTCCCAACCACTTGAGGTGT 59.077 50.000 0.00 0.00 42.25 4.16
3859 4205 0.923358 TCCCAACCACTTGAGGTGTT 59.077 50.000 0.00 0.00 42.25 3.32
3860 4206 1.032014 CCCAACCACTTGAGGTGTTG 58.968 55.000 0.00 0.00 42.25 3.33
3861 4207 1.684869 CCCAACCACTTGAGGTGTTGT 60.685 52.381 11.42 0.00 42.25 3.32
3862 4208 1.676006 CCAACCACTTGAGGTGTTGTC 59.324 52.381 11.42 0.00 42.25 3.18
3863 4209 1.330521 CAACCACTTGAGGTGTTGTCG 59.669 52.381 0.00 0.00 42.25 4.35
3864 4210 0.179056 ACCACTTGAGGTGTTGTCGG 60.179 55.000 0.00 0.00 43.94 4.79
3865 4211 0.105964 CCACTTGAGGTGTTGTCGGA 59.894 55.000 0.00 0.00 43.94 4.55
3866 4212 1.217882 CACTTGAGGTGTTGTCGGAC 58.782 55.000 0.00 0.00 40.79 4.79
3867 4213 0.828022 ACTTGAGGTGTTGTCGGACA 59.172 50.000 6.76 6.76 0.00 4.02
3868 4214 1.416401 ACTTGAGGTGTTGTCGGACAT 59.584 47.619 12.26 0.00 0.00 3.06
3869 4215 1.800586 CTTGAGGTGTTGTCGGACATG 59.199 52.381 12.26 0.00 0.00 3.21
3870 4216 0.756294 TGAGGTGTTGTCGGACATGT 59.244 50.000 12.26 0.00 0.00 3.21
3871 4217 1.148310 GAGGTGTTGTCGGACATGTG 58.852 55.000 12.26 0.00 0.00 3.21
3872 4218 0.884704 AGGTGTTGTCGGACATGTGC 60.885 55.000 12.26 4.73 0.00 4.57
3873 4219 1.574428 GTGTTGTCGGACATGTGCC 59.426 57.895 12.26 7.91 0.00 5.01
3874 4220 1.599518 TGTTGTCGGACATGTGCCC 60.600 57.895 12.26 2.42 0.00 5.36
3875 4221 2.033448 TTGTCGGACATGTGCCCC 59.967 61.111 12.26 1.63 0.00 5.80
3876 4222 3.892740 TTGTCGGACATGTGCCCCG 62.893 63.158 16.25 16.25 44.22 5.73
3880 4226 4.796495 GGACATGTGCCCCGGACC 62.796 72.222 1.15 0.00 0.00 4.46
3898 4244 4.918129 GTCGCGCCGAGCCGATTA 62.918 66.667 0.00 0.00 44.76 1.75
3899 4245 4.196108 TCGCGCCGAGCCGATTAA 62.196 61.111 0.00 0.00 44.76 1.40
3900 4246 3.984765 CGCGCCGAGCCGATTAAC 61.985 66.667 0.00 0.00 44.76 2.01
3901 4247 3.637030 GCGCCGAGCCGATTAACC 61.637 66.667 0.00 0.00 40.81 2.85
3902 4248 2.965462 CGCCGAGCCGATTAACCC 60.965 66.667 0.00 0.00 0.00 4.11
3903 4249 2.965462 GCCGAGCCGATTAACCCG 60.965 66.667 0.00 0.00 0.00 5.28
3909 4255 2.515290 CCGATTAACCCGGTGCCC 60.515 66.667 0.00 0.00 41.91 5.36
3910 4256 2.587889 CGATTAACCCGGTGCCCT 59.412 61.111 0.00 0.00 0.00 5.19
3911 4257 1.078001 CGATTAACCCGGTGCCCTT 60.078 57.895 0.00 0.00 0.00 3.95
3912 4258 1.093496 CGATTAACCCGGTGCCCTTC 61.093 60.000 0.00 0.00 0.00 3.46
3913 4259 0.255033 GATTAACCCGGTGCCCTTCT 59.745 55.000 0.00 0.00 0.00 2.85
3914 4260 0.034477 ATTAACCCGGTGCCCTTCTG 60.034 55.000 0.00 0.00 0.00 3.02
3915 4261 1.420532 TTAACCCGGTGCCCTTCTGT 61.421 55.000 0.00 0.00 0.00 3.41
3916 4262 1.833787 TAACCCGGTGCCCTTCTGTC 61.834 60.000 0.00 0.00 0.00 3.51
3917 4263 4.760047 CCCGGTGCCCTTCTGTCG 62.760 72.222 0.00 0.00 0.00 4.35
3918 4264 4.760047 CCGGTGCCCTTCTGTCGG 62.760 72.222 0.00 0.00 0.00 4.79
3919 4265 4.003788 CGGTGCCCTTCTGTCGGT 62.004 66.667 0.00 0.00 0.00 4.69
3920 4266 2.358737 GGTGCCCTTCTGTCGGTG 60.359 66.667 0.00 0.00 0.00 4.94
3921 4267 2.426023 GTGCCCTTCTGTCGGTGT 59.574 61.111 0.00 0.00 0.00 4.16
3922 4268 1.668151 GTGCCCTTCTGTCGGTGTC 60.668 63.158 0.00 0.00 0.00 3.67
3923 4269 2.137528 TGCCCTTCTGTCGGTGTCA 61.138 57.895 0.00 0.00 0.00 3.58
3924 4270 1.070786 GCCCTTCTGTCGGTGTCAA 59.929 57.895 0.00 0.00 0.00 3.18
3925 4271 0.534203 GCCCTTCTGTCGGTGTCAAA 60.534 55.000 0.00 0.00 0.00 2.69
3926 4272 1.961793 CCCTTCTGTCGGTGTCAAAA 58.038 50.000 0.00 0.00 0.00 2.44
3927 4273 1.602377 CCCTTCTGTCGGTGTCAAAAC 59.398 52.381 0.00 0.00 0.00 2.43
3928 4274 2.561569 CCTTCTGTCGGTGTCAAAACT 58.438 47.619 0.00 0.00 0.00 2.66
3929 4275 2.287915 CCTTCTGTCGGTGTCAAAACTG 59.712 50.000 0.00 0.00 0.00 3.16
3930 4276 1.948104 TCTGTCGGTGTCAAAACTGG 58.052 50.000 0.00 0.00 0.00 4.00
3931 4277 0.307760 CTGTCGGTGTCAAAACTGGC 59.692 55.000 0.00 0.00 0.00 4.85
3932 4278 0.393132 TGTCGGTGTCAAAACTGGCA 60.393 50.000 0.00 0.00 38.70 4.92
3933 4279 0.307760 GTCGGTGTCAAAACTGGCAG 59.692 55.000 14.16 14.16 31.09 4.85
3934 4280 0.179234 TCGGTGTCAAAACTGGCAGA 59.821 50.000 23.66 0.00 0.00 4.26
3935 4281 1.202758 TCGGTGTCAAAACTGGCAGAT 60.203 47.619 23.66 6.45 0.00 2.90
3936 4282 1.197721 CGGTGTCAAAACTGGCAGATC 59.802 52.381 23.66 0.00 0.00 2.75
3937 4283 2.508526 GGTGTCAAAACTGGCAGATCT 58.491 47.619 23.66 1.75 0.00 2.75
3938 4284 2.485814 GGTGTCAAAACTGGCAGATCTC 59.514 50.000 23.66 6.84 0.00 2.75
3939 4285 2.158449 GTGTCAAAACTGGCAGATCTCG 59.842 50.000 23.66 5.46 0.00 4.04
3940 4286 1.734465 GTCAAAACTGGCAGATCTCGG 59.266 52.381 23.66 5.46 0.00 4.63
3941 4287 1.623311 TCAAAACTGGCAGATCTCGGA 59.377 47.619 23.66 7.80 0.00 4.55
3942 4288 2.237143 TCAAAACTGGCAGATCTCGGAT 59.763 45.455 23.66 0.00 0.00 4.18
3943 4289 3.450817 TCAAAACTGGCAGATCTCGGATA 59.549 43.478 23.66 0.00 0.00 2.59
3944 4290 3.742433 AAACTGGCAGATCTCGGATAG 57.258 47.619 23.66 0.00 0.00 2.08
3945 4291 1.626686 ACTGGCAGATCTCGGATAGG 58.373 55.000 23.66 0.00 0.00 2.57
3946 4292 1.133325 ACTGGCAGATCTCGGATAGGT 60.133 52.381 23.66 0.00 0.00 3.08
3947 4293 1.271934 CTGGCAGATCTCGGATAGGTG 59.728 57.143 9.42 0.00 0.00 4.00
3948 4294 0.605589 GGCAGATCTCGGATAGGTGG 59.394 60.000 0.00 0.00 0.00 4.61
3949 4295 1.333177 GCAGATCTCGGATAGGTGGT 58.667 55.000 0.00 0.00 0.00 4.16
3950 4296 1.271102 GCAGATCTCGGATAGGTGGTC 59.729 57.143 0.00 0.00 0.00 4.02
3951 4297 1.889829 CAGATCTCGGATAGGTGGTCC 59.110 57.143 0.00 0.00 0.00 4.46
3952 4298 1.203075 AGATCTCGGATAGGTGGTCCC 60.203 57.143 0.00 0.00 31.87 4.46
3953 4299 0.561184 ATCTCGGATAGGTGGTCCCA 59.439 55.000 0.00 0.00 34.66 4.37
3954 4300 0.337082 TCTCGGATAGGTGGTCCCAA 59.663 55.000 0.00 0.00 34.66 4.12
3955 4301 0.753262 CTCGGATAGGTGGTCCCAAG 59.247 60.000 0.00 0.00 34.66 3.61
3956 4302 1.146263 CGGATAGGTGGTCCCAAGC 59.854 63.158 0.00 0.00 34.66 4.01
3957 4303 1.338136 CGGATAGGTGGTCCCAAGCT 61.338 60.000 0.00 0.00 34.66 3.74
3958 4304 0.181350 GGATAGGTGGTCCCAAGCTG 59.819 60.000 0.00 0.00 34.66 4.24
3959 4305 0.912486 GATAGGTGGTCCCAAGCTGT 59.088 55.000 0.00 0.00 34.66 4.40
3960 4306 0.620556 ATAGGTGGTCCCAAGCTGTG 59.379 55.000 0.00 0.00 34.66 3.66
3961 4307 0.766674 TAGGTGGTCCCAAGCTGTGT 60.767 55.000 0.00 0.00 34.66 3.72
3962 4308 0.766674 AGGTGGTCCCAAGCTGTGTA 60.767 55.000 0.00 0.00 34.66 2.90
3963 4309 0.328258 GGTGGTCCCAAGCTGTGTAT 59.672 55.000 0.00 0.00 0.00 2.29
3964 4310 1.679032 GGTGGTCCCAAGCTGTGTATC 60.679 57.143 0.00 0.00 0.00 2.24
3965 4311 1.279271 GTGGTCCCAAGCTGTGTATCT 59.721 52.381 0.00 0.00 0.00 1.98
3966 4312 1.278985 TGGTCCCAAGCTGTGTATCTG 59.721 52.381 0.00 0.00 0.00 2.90
3967 4313 1.555075 GGTCCCAAGCTGTGTATCTGA 59.445 52.381 0.00 0.00 0.00 3.27
3968 4314 2.622436 GTCCCAAGCTGTGTATCTGAC 58.378 52.381 0.00 0.00 0.00 3.51
3969 4315 1.204704 TCCCAAGCTGTGTATCTGACG 59.795 52.381 0.00 0.00 0.00 4.35
3970 4316 1.204704 CCCAAGCTGTGTATCTGACGA 59.795 52.381 0.00 0.00 0.00 4.20
3971 4317 2.159043 CCCAAGCTGTGTATCTGACGAT 60.159 50.000 0.00 0.00 0.00 3.73
3972 4318 3.119291 CCAAGCTGTGTATCTGACGATC 58.881 50.000 0.00 0.00 0.00 3.69
3973 4319 2.765108 AGCTGTGTATCTGACGATCG 57.235 50.000 14.88 14.88 0.00 3.69
3974 4320 2.289565 AGCTGTGTATCTGACGATCGA 58.710 47.619 24.34 0.00 0.00 3.59
3975 4321 2.881513 AGCTGTGTATCTGACGATCGAT 59.118 45.455 24.34 7.22 0.00 3.59
3976 4322 2.976509 GCTGTGTATCTGACGATCGATG 59.023 50.000 24.34 11.01 0.00 3.84
3977 4323 3.559504 CTGTGTATCTGACGATCGATGG 58.440 50.000 24.34 3.61 0.00 3.51
3978 4324 2.949644 TGTGTATCTGACGATCGATGGT 59.050 45.455 24.34 13.28 0.00 3.55
3979 4325 4.131596 TGTGTATCTGACGATCGATGGTA 58.868 43.478 24.34 8.73 0.00 3.25
3980 4326 4.577283 TGTGTATCTGACGATCGATGGTAA 59.423 41.667 24.34 5.17 0.00 2.85
3981 4327 4.910456 GTGTATCTGACGATCGATGGTAAC 59.090 45.833 24.34 12.90 0.00 2.50
3982 4328 2.750301 TCTGACGATCGATGGTAACG 57.250 50.000 24.34 7.46 42.51 3.18
3983 4329 2.282407 TCTGACGATCGATGGTAACGA 58.718 47.619 24.34 7.32 43.65 3.85
3984 4330 2.287103 TCTGACGATCGATGGTAACGAG 59.713 50.000 24.34 7.38 42.81 4.18
3985 4331 1.332686 TGACGATCGATGGTAACGAGG 59.667 52.381 24.34 0.00 42.81 4.63
3986 4332 0.666913 ACGATCGATGGTAACGAGGG 59.333 55.000 24.34 0.00 42.81 4.30
3987 4333 0.949397 CGATCGATGGTAACGAGGGA 59.051 55.000 10.26 0.00 42.81 4.20
3988 4334 1.334779 CGATCGATGGTAACGAGGGAC 60.335 57.143 10.26 0.00 42.81 4.46
3989 4335 1.679680 GATCGATGGTAACGAGGGACA 59.320 52.381 0.54 0.00 42.81 4.02
3990 4336 0.813184 TCGATGGTAACGAGGGACAC 59.187 55.000 0.00 0.00 42.51 3.67
3991 4337 0.528924 CGATGGTAACGAGGGACACA 59.471 55.000 0.00 0.00 42.51 3.72
3992 4338 1.067425 CGATGGTAACGAGGGACACAA 60.067 52.381 0.00 0.00 42.51 3.33
3993 4339 2.618053 GATGGTAACGAGGGACACAAG 58.382 52.381 0.00 0.00 42.51 3.16
3994 4340 0.682852 TGGTAACGAGGGACACAAGG 59.317 55.000 0.00 0.00 42.51 3.61
3995 4341 0.036671 GGTAACGAGGGACACAAGGG 60.037 60.000 0.00 0.00 0.00 3.95
3996 4342 0.971386 GTAACGAGGGACACAAGGGA 59.029 55.000 0.00 0.00 0.00 4.20
3997 4343 0.971386 TAACGAGGGACACAAGGGAC 59.029 55.000 0.00 0.00 0.00 4.46
3998 4344 1.052124 AACGAGGGACACAAGGGACA 61.052 55.000 0.00 0.00 0.00 4.02
3999 4345 1.004918 CGAGGGACACAAGGGACAC 60.005 63.158 0.00 0.00 0.00 3.67
4000 4346 1.754380 CGAGGGACACAAGGGACACA 61.754 60.000 0.00 0.00 0.00 3.72
4001 4347 0.472471 GAGGGACACAAGGGACACAA 59.528 55.000 0.00 0.00 0.00 3.33
4002 4348 1.073923 GAGGGACACAAGGGACACAAT 59.926 52.381 0.00 0.00 0.00 2.71
4003 4349 1.202927 AGGGACACAAGGGACACAATG 60.203 52.381 0.00 0.00 0.00 2.82
4004 4350 1.478654 GGGACACAAGGGACACAATGT 60.479 52.381 0.00 0.00 0.00 2.71
4005 4351 2.306847 GGACACAAGGGACACAATGTT 58.693 47.619 0.00 0.00 0.00 2.71
4006 4352 2.693074 GGACACAAGGGACACAATGTTT 59.307 45.455 0.00 0.00 0.00 2.83
4007 4353 3.132111 GGACACAAGGGACACAATGTTTT 59.868 43.478 0.00 0.00 0.00 2.43
4008 4354 4.339814 GGACACAAGGGACACAATGTTTTA 59.660 41.667 0.00 0.00 0.00 1.52
4009 4355 5.257082 ACACAAGGGACACAATGTTTTAC 57.743 39.130 0.00 0.00 0.00 2.01
4010 4356 4.098807 ACACAAGGGACACAATGTTTTACC 59.901 41.667 0.00 0.00 0.00 2.85
4011 4357 4.098654 CACAAGGGACACAATGTTTTACCA 59.901 41.667 0.00 0.00 0.00 3.25
4012 4358 4.712337 ACAAGGGACACAATGTTTTACCAA 59.288 37.500 0.00 0.00 0.00 3.67
4013 4359 5.163457 ACAAGGGACACAATGTTTTACCAAG 60.163 40.000 0.00 0.00 0.00 3.61
4014 4360 3.895041 AGGGACACAATGTTTTACCAAGG 59.105 43.478 0.00 0.00 0.00 3.61
4015 4361 3.639561 GGGACACAATGTTTTACCAAGGT 59.360 43.478 0.00 0.00 0.00 3.50
4016 4362 4.100344 GGGACACAATGTTTTACCAAGGTT 59.900 41.667 0.00 0.00 0.00 3.50
4017 4363 5.286438 GGACACAATGTTTTACCAAGGTTC 58.714 41.667 0.00 0.00 0.00 3.62
4018 4364 5.163499 GGACACAATGTTTTACCAAGGTTCA 60.163 40.000 0.00 0.00 0.00 3.18
4019 4365 5.901552 ACACAATGTTTTACCAAGGTTCAG 58.098 37.500 0.00 0.00 0.00 3.02
4020 4366 5.163457 ACACAATGTTTTACCAAGGTTCAGG 60.163 40.000 0.00 0.00 0.00 3.86
4021 4367 4.202212 ACAATGTTTTACCAAGGTTCAGGC 60.202 41.667 0.00 0.00 0.00 4.85
4022 4368 2.312390 TGTTTTACCAAGGTTCAGGCC 58.688 47.619 0.00 0.00 0.00 5.19
4023 4369 1.616865 GTTTTACCAAGGTTCAGGCCC 59.383 52.381 0.00 0.00 0.00 5.80
4024 4370 1.154430 TTTACCAAGGTTCAGGCCCT 58.846 50.000 0.00 0.00 0.00 5.19
4025 4371 0.696501 TTACCAAGGTTCAGGCCCTC 59.303 55.000 0.00 0.00 0.00 4.30
4026 4372 0.178873 TACCAAGGTTCAGGCCCTCT 60.179 55.000 0.00 0.00 0.00 3.69
4027 4373 1.068352 ACCAAGGTTCAGGCCCTCTT 61.068 55.000 0.00 0.00 0.00 2.85
4028 4374 0.991920 CCAAGGTTCAGGCCCTCTTA 59.008 55.000 0.00 0.00 0.00 2.10
4029 4375 1.354368 CCAAGGTTCAGGCCCTCTTAA 59.646 52.381 0.00 0.00 0.00 1.85
4030 4376 2.225017 CCAAGGTTCAGGCCCTCTTAAA 60.225 50.000 0.00 0.00 0.00 1.52
4031 4377 3.084786 CAAGGTTCAGGCCCTCTTAAAG 58.915 50.000 0.00 0.00 0.00 1.85
4032 4378 1.636003 AGGTTCAGGCCCTCTTAAAGG 59.364 52.381 0.00 0.00 45.77 3.11
4047 4393 6.041423 TCTTAAAGGAGGTAAAACCCTACG 57.959 41.667 0.00 0.00 40.73 3.51
4048 4394 5.543790 TCTTAAAGGAGGTAAAACCCTACGT 59.456 40.000 0.00 0.00 40.73 3.57
4049 4395 3.969287 AAGGAGGTAAAACCCTACGTC 57.031 47.619 0.00 0.00 40.73 4.34
4050 4396 2.680312 GGAGGTAAAACCCTACGTCC 57.320 55.000 0.00 6.71 44.94 4.79
4051 4397 2.182827 GGAGGTAAAACCCTACGTCCT 58.817 52.381 12.88 0.00 46.43 3.85
4052 4398 2.093816 GGAGGTAAAACCCTACGTCCTG 60.094 54.545 12.88 0.00 46.43 3.86
4053 4399 1.277273 AGGTAAAACCCTACGTCCTGC 59.723 52.381 0.00 0.00 39.75 4.85
4054 4400 1.277273 GGTAAAACCCTACGTCCTGCT 59.723 52.381 0.00 0.00 30.04 4.24
4055 4401 2.289882 GGTAAAACCCTACGTCCTGCTT 60.290 50.000 0.00 0.00 30.04 3.91
4056 4402 1.892209 AAAACCCTACGTCCTGCTTG 58.108 50.000 0.00 0.00 0.00 4.01
4057 4403 1.053424 AAACCCTACGTCCTGCTTGA 58.947 50.000 0.00 0.00 0.00 3.02
4058 4404 1.276622 AACCCTACGTCCTGCTTGAT 58.723 50.000 0.00 0.00 0.00 2.57
4059 4405 1.276622 ACCCTACGTCCTGCTTGATT 58.723 50.000 0.00 0.00 0.00 2.57
4060 4406 2.463752 ACCCTACGTCCTGCTTGATTA 58.536 47.619 0.00 0.00 0.00 1.75
4061 4407 3.039011 ACCCTACGTCCTGCTTGATTAT 58.961 45.455 0.00 0.00 0.00 1.28
4062 4408 4.220724 ACCCTACGTCCTGCTTGATTATA 58.779 43.478 0.00 0.00 0.00 0.98
4063 4409 4.838986 ACCCTACGTCCTGCTTGATTATAT 59.161 41.667 0.00 0.00 0.00 0.86
4064 4410 5.307196 ACCCTACGTCCTGCTTGATTATATT 59.693 40.000 0.00 0.00 0.00 1.28
4065 4411 5.869888 CCCTACGTCCTGCTTGATTATATTC 59.130 44.000 0.00 0.00 0.00 1.75
4066 4412 5.573282 CCTACGTCCTGCTTGATTATATTCG 59.427 44.000 0.00 0.00 0.00 3.34
4067 4413 5.196341 ACGTCCTGCTTGATTATATTCGA 57.804 39.130 0.00 0.00 0.00 3.71
4068 4414 5.784177 ACGTCCTGCTTGATTATATTCGAT 58.216 37.500 0.00 0.00 0.00 3.59
4069 4415 5.635280 ACGTCCTGCTTGATTATATTCGATG 59.365 40.000 0.00 0.00 0.00 3.84
4070 4416 5.635280 CGTCCTGCTTGATTATATTCGATGT 59.365 40.000 0.00 0.00 0.00 3.06
4071 4417 6.400409 CGTCCTGCTTGATTATATTCGATGTG 60.400 42.308 0.00 0.00 0.00 3.21
4072 4418 6.425114 GTCCTGCTTGATTATATTCGATGTGT 59.575 38.462 0.00 0.00 0.00 3.72
4073 4419 7.598869 GTCCTGCTTGATTATATTCGATGTGTA 59.401 37.037 0.00 0.00 0.00 2.90
4074 4420 8.314021 TCCTGCTTGATTATATTCGATGTGTAT 58.686 33.333 0.00 0.00 0.00 2.29
4075 4421 9.586435 CCTGCTTGATTATATTCGATGTGTATA 57.414 33.333 0.00 0.00 0.00 1.47
4086 4432 9.706691 ATATTCGATGTGTATAAGGGTTACAAG 57.293 33.333 0.00 0.00 31.72 3.16
4087 4433 6.778834 TCGATGTGTATAAGGGTTACAAGA 57.221 37.500 0.00 0.00 31.72 3.02
4088 4434 6.802608 TCGATGTGTATAAGGGTTACAAGAG 58.197 40.000 0.00 0.00 31.72 2.85
4089 4435 6.379133 TCGATGTGTATAAGGGTTACAAGAGT 59.621 38.462 0.00 0.00 31.72 3.24
4090 4436 7.039882 CGATGTGTATAAGGGTTACAAGAGTT 58.960 38.462 0.00 0.00 31.72 3.01
4091 4437 7.010183 CGATGTGTATAAGGGTTACAAGAGTTG 59.990 40.741 0.00 0.00 31.72 3.16
4092 4438 7.305813 TGTGTATAAGGGTTACAAGAGTTGA 57.694 36.000 0.00 0.00 31.72 3.18
4093 4439 7.913789 TGTGTATAAGGGTTACAAGAGTTGAT 58.086 34.615 0.00 0.00 31.72 2.57
4094 4440 8.038944 TGTGTATAAGGGTTACAAGAGTTGATC 58.961 37.037 0.00 0.00 31.72 2.92
4095 4441 8.258708 GTGTATAAGGGTTACAAGAGTTGATCT 58.741 37.037 0.00 0.00 41.27 2.75
4096 4442 9.483489 TGTATAAGGGTTACAAGAGTTGATCTA 57.517 33.333 0.00 0.00 37.23 1.98
4097 4443 9.747293 GTATAAGGGTTACAAGAGTTGATCTAC 57.253 37.037 0.00 0.00 37.23 2.59
4098 4444 5.678955 AGGGTTACAAGAGTTGATCTACC 57.321 43.478 3.54 0.00 37.23 3.18
4099 4445 5.342866 AGGGTTACAAGAGTTGATCTACCT 58.657 41.667 3.54 0.00 37.23 3.08
4100 4446 5.422650 AGGGTTACAAGAGTTGATCTACCTC 59.577 44.000 3.54 1.73 37.23 3.85
4101 4447 5.187186 GGGTTACAAGAGTTGATCTACCTCA 59.813 44.000 3.54 0.00 37.23 3.86
4102 4448 6.295688 GGGTTACAAGAGTTGATCTACCTCAA 60.296 42.308 3.54 0.00 37.23 3.02
4103 4449 6.814146 GGTTACAAGAGTTGATCTACCTCAAG 59.186 42.308 3.54 1.71 37.23 3.02
4104 4450 7.309867 GGTTACAAGAGTTGATCTACCTCAAGA 60.310 40.741 3.54 0.00 37.23 3.02
4105 4451 6.865834 ACAAGAGTTGATCTACCTCAAGAT 57.134 37.500 3.54 0.00 37.23 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 6.946583 TCTACTTGCTGACCTCTTTTCTAGTA 59.053 38.462 0.00 0.00 0.00 1.82
132 134 2.808543 GCGCCCACCAATATCTTTCTAG 59.191 50.000 0.00 0.00 0.00 2.43
134 136 1.064758 TGCGCCCACCAATATCTTTCT 60.065 47.619 4.18 0.00 0.00 2.52
178 190 9.965824 CGCATATTATTTAACCCTCTGATTTTT 57.034 29.630 0.00 0.00 0.00 1.94
197 209 7.277981 CCTTCTTAAAGTGACACTACGCATATT 59.722 37.037 8.91 0.00 0.00 1.28
203 215 6.921857 TCTTTCCTTCTTAAAGTGACACTACG 59.078 38.462 8.91 0.00 35.79 3.51
319 332 6.804783 ACTTTAGAAACACAAACAAACTTCGG 59.195 34.615 0.00 0.00 0.00 4.30
407 421 4.733405 GCCTTTTGTAGTTGTTCTTCGTTG 59.267 41.667 0.00 0.00 0.00 4.10
421 435 1.144913 ACTCCTTGGCTGCCTTTTGTA 59.855 47.619 21.03 0.00 0.00 2.41
438 452 8.958119 TTGTACATATATGGGAAGAACAACTC 57.042 34.615 16.96 0.00 0.00 3.01
440 454 8.958119 TCTTGTACATATATGGGAAGAACAAC 57.042 34.615 16.96 2.30 0.00 3.32
441 455 9.391006 GTTCTTGTACATATATGGGAAGAACAA 57.609 33.333 31.95 22.83 42.77 2.83
442 456 8.544622 TGTTCTTGTACATATATGGGAAGAACA 58.455 33.333 33.55 33.55 45.79 3.18
443 457 8.958119 TGTTCTTGTACATATATGGGAAGAAC 57.042 34.615 31.25 31.25 43.08 3.01
446 460 9.155975 GCTATGTTCTTGTACATATATGGGAAG 57.844 37.037 16.96 13.79 39.54 3.46
447 461 8.880244 AGCTATGTTCTTGTACATATATGGGAA 58.120 33.333 16.96 9.52 39.54 3.97
449 463 7.766278 GGAGCTATGTTCTTGTACATATATGGG 59.234 40.741 16.96 2.46 39.54 4.00
705 753 3.965539 GAGCCATGCCGCTGAGTGT 62.966 63.158 0.79 0.00 39.87 3.55
832 880 5.198207 GGGAGGAGGACTATATAGAGCTTC 58.802 50.000 16.79 12.28 0.00 3.86
953 1022 0.768266 CGTGTGTGAGTTACGACGTG 59.232 55.000 11.56 0.00 40.01 4.49
957 1026 2.012414 GCGCGTGTGTGAGTTACGA 61.012 57.895 8.43 0.00 40.01 3.43
970 1039 1.131126 CTCTGATCCAAAATTGCGCGT 59.869 47.619 8.43 0.00 0.00 6.01
991 1060 1.611519 GAGGTAGTCATCGGAGAGGG 58.388 60.000 0.00 0.00 43.63 4.30
1164 1233 2.105128 GACGGGGACATGAGCGAG 59.895 66.667 0.00 0.00 0.00 5.03
1273 1342 0.525455 GCGCCAACGGAATTCCATTC 60.525 55.000 24.09 3.71 40.57 2.67
1274 1343 1.510844 GCGCCAACGGAATTCCATT 59.489 52.632 24.09 13.01 40.57 3.16
1308 1378 1.057361 GCGAATCAGCGACACGAAC 59.943 57.895 0.00 0.00 0.00 3.95
1337 1407 1.616865 ACGGGAAGATCTGAAACGACA 59.383 47.619 13.87 0.00 0.00 4.35
1551 1624 2.172483 ATCTCACCTGTGACGCCACC 62.172 60.000 0.00 0.00 42.53 4.61
1585 1669 1.026584 TGACAAAGTCGACGAGGACA 58.973 50.000 10.46 7.13 39.42 4.02
1586 1670 2.129823 TTGACAAAGTCGACGAGGAC 57.870 50.000 10.46 4.58 34.95 3.85
1587 1671 2.875087 TTTGACAAAGTCGACGAGGA 57.125 45.000 10.46 0.00 34.95 3.71
1588 1672 4.684703 ACTTATTTGACAAAGTCGACGAGG 59.315 41.667 10.46 5.89 34.95 4.63
1589 1673 5.824243 ACTTATTTGACAAAGTCGACGAG 57.176 39.130 10.46 6.65 34.95 4.18
1590 1674 8.969121 TTATACTTATTTGACAAAGTCGACGA 57.031 30.769 10.46 0.00 37.19 4.20
1591 1675 9.456797 GTTTATACTTATTTGACAAAGTCGACG 57.543 33.333 10.46 0.00 37.19 5.12
1625 1709 7.187480 GGAACGAAGAAAAATGGTATTCTAGC 58.813 38.462 0.00 0.00 34.90 3.42
1646 1730 2.247267 CGTTTGTGGACGCGGAAC 59.753 61.111 12.47 6.06 36.12 3.62
1708 1792 4.200092 GGGACTATTTCTCACAACCATCC 58.800 47.826 0.00 0.00 0.00 3.51
1756 1840 3.573772 CTCTCGTGCGCTGTTGGGA 62.574 63.158 9.73 0.00 0.00 4.37
2418 2547 0.449388 CCTCCAAGAATGCAACTCGC 59.551 55.000 0.00 0.00 42.89 5.03
2465 2594 4.202472 ACCGTCTCTCCTCCTGAAATTTTT 60.202 41.667 0.00 0.00 0.00 1.94
2469 2598 1.827969 CACCGTCTCTCCTCCTGAAAT 59.172 52.381 0.00 0.00 0.00 2.17
2647 2881 0.816018 CCACCGTGGTGCACTTGTAA 60.816 55.000 17.98 0.00 44.16 2.41
2817 3051 4.468689 GGTAGTGGCCGGTGCTCC 62.469 72.222 1.90 0.00 37.74 4.70
3119 3362 0.716108 CCATTTCTGACACTCGTCGC 59.284 55.000 0.00 0.00 45.80 5.19
3121 3364 1.795768 TGCCATTTCTGACACTCGTC 58.204 50.000 0.00 0.00 42.93 4.20
3156 3399 4.868067 ACGTATTACAGGATAAAGCTCCG 58.132 43.478 0.00 0.00 40.46 4.63
3182 3431 3.431572 GTGTCTACGCCTATCCTAGTACG 59.568 52.174 0.00 0.00 0.00 3.67
3223 3472 2.203451 CTCTGCATCCATGGGCCC 60.203 66.667 17.59 17.59 0.00 5.80
3256 3507 1.072648 CGTTGTGTTAAGGAAGGGGGA 59.927 52.381 0.00 0.00 0.00 4.81
3273 3525 7.832685 AGCCCTAAATATTTTCTTTACTCCGTT 59.167 33.333 5.91 0.00 0.00 4.44
3297 3549 4.747108 CCTATCTTGTGTGTATGCTACAGC 59.253 45.833 0.00 0.00 39.77 4.40
3353 3605 3.808728 ACATACTTCTGTGTGCAAGTGT 58.191 40.909 0.00 0.00 38.62 3.55
3359 3611 4.811555 TCAACAACATACTTCTGTGTGC 57.188 40.909 0.00 0.00 38.62 4.57
3475 3780 9.950496 AATGATTGGATTACAGTGAGTATATCC 57.050 33.333 0.00 2.35 38.94 2.59
3479 3784 9.466497 ACAAAATGATTGGATTACAGTGAGTAT 57.534 29.630 0.00 0.00 31.53 2.12
3510 3823 6.578944 TGTTTGTTCAGTCTGTAGTGTGTAT 58.421 36.000 0.00 0.00 0.00 2.29
3515 3828 7.015226 TCATTTGTTTGTTCAGTCTGTAGTG 57.985 36.000 0.00 0.00 0.00 2.74
3537 3850 8.103935 TGCCAAACCATAATTCGGTATATATCA 58.896 33.333 0.09 0.00 34.99 2.15
3538 3851 8.500753 TGCCAAACCATAATTCGGTATATATC 57.499 34.615 0.09 0.00 34.99 1.63
3578 3893 6.510879 AGGTGCAAGTTTAGGCTTATAAAC 57.489 37.500 0.00 0.00 43.12 2.01
3598 3913 1.544759 GGTTGAATGTTCACCCGAGGT 60.545 52.381 0.00 0.00 36.83 3.85
3599 3914 1.165270 GGTTGAATGTTCACCCGAGG 58.835 55.000 0.00 0.00 36.83 4.63
3601 3916 0.768622 AGGGTTGAATGTTCACCCGA 59.231 50.000 18.90 0.00 45.31 5.14
3605 3920 2.508526 AGCTGAGGGTTGAATGTTCAC 58.491 47.619 0.00 0.00 36.83 3.18
3620 3935 4.012374 GGGATGACTGATTTTGAAGCTGA 58.988 43.478 0.00 0.00 0.00 4.26
3623 3938 3.507233 TGTGGGATGACTGATTTTGAAGC 59.493 43.478 0.00 0.00 0.00 3.86
3634 3949 2.461695 AGTTCGAGATGTGGGATGACT 58.538 47.619 0.00 0.00 0.00 3.41
3647 3962 3.676646 CCTAAACGGTTGGTTAGTTCGAG 59.323 47.826 0.00 0.00 38.08 4.04
3690 4005 5.685511 GCAGTCAAAATCGCTTAAGTCAAAA 59.314 36.000 4.02 0.00 0.00 2.44
3691 4006 5.212194 GCAGTCAAAATCGCTTAAGTCAAA 58.788 37.500 4.02 0.00 0.00 2.69
3692 4007 4.320202 GGCAGTCAAAATCGCTTAAGTCAA 60.320 41.667 4.02 0.00 0.00 3.18
3693 4008 3.188460 GGCAGTCAAAATCGCTTAAGTCA 59.812 43.478 4.02 0.00 0.00 3.41
3699 4036 0.798776 CTCGGCAGTCAAAATCGCTT 59.201 50.000 0.00 0.00 0.00 4.68
3701 4038 0.517316 AACTCGGCAGTCAAAATCGC 59.483 50.000 0.00 0.00 29.93 4.58
3727 4073 2.290896 CCACATTAAGGAGTTGGCCTCA 60.291 50.000 3.32 0.00 42.40 3.86
3728 4074 2.026262 TCCACATTAAGGAGTTGGCCTC 60.026 50.000 3.32 0.00 37.26 4.70
3730 4076 2.492088 GTTCCACATTAAGGAGTTGGCC 59.508 50.000 0.00 0.00 36.33 5.36
3735 4081 1.349688 TGCGGTTCCACATTAAGGAGT 59.650 47.619 0.00 0.00 36.33 3.85
3753 4099 2.988010 TGGAGGTGTATGATCTGTGC 57.012 50.000 0.00 0.00 0.00 4.57
3763 4109 2.436417 GCAAGAAGCAATGGAGGTGTA 58.564 47.619 0.00 0.00 44.79 2.90
3784 4130 3.282745 TTCCCGTGAGTGCGAGCTC 62.283 63.158 2.73 2.73 36.12 4.09
3790 4136 1.668151 GAGTGGTTCCCGTGAGTGC 60.668 63.158 0.00 0.00 0.00 4.40
3791 4137 1.004918 GGAGTGGTTCCCGTGAGTG 60.005 63.158 0.00 0.00 40.37 3.51
3792 4138 3.468063 GGAGTGGTTCCCGTGAGT 58.532 61.111 0.00 0.00 40.37 3.41
3800 4146 3.255888 GGACAAAATGGAAGGAGTGGTTC 59.744 47.826 0.00 0.00 0.00 3.62
3801 4147 3.230976 GGACAAAATGGAAGGAGTGGTT 58.769 45.455 0.00 0.00 0.00 3.67
3802 4148 2.490902 GGGACAAAATGGAAGGAGTGGT 60.491 50.000 0.00 0.00 0.00 4.16
3803 4149 2.171003 GGGACAAAATGGAAGGAGTGG 58.829 52.381 0.00 0.00 0.00 4.00
3804 4150 2.171003 GGGGACAAAATGGAAGGAGTG 58.829 52.381 0.00 0.00 0.00 3.51
3805 4151 1.786441 TGGGGACAAAATGGAAGGAGT 59.214 47.619 0.00 0.00 37.44 3.85
3806 4152 2.171003 GTGGGGACAAAATGGAAGGAG 58.829 52.381 0.00 0.00 46.06 3.69
3807 4153 1.203125 GGTGGGGACAAAATGGAAGGA 60.203 52.381 0.00 0.00 46.06 3.36
3808 4154 1.266178 GGTGGGGACAAAATGGAAGG 58.734 55.000 0.00 0.00 46.06 3.46
3809 4155 1.266178 GGGTGGGGACAAAATGGAAG 58.734 55.000 0.00 0.00 46.06 3.46
3810 4156 0.563173 TGGGTGGGGACAAAATGGAA 59.437 50.000 0.00 0.00 46.06 3.53
3811 4157 0.563173 TTGGGTGGGGACAAAATGGA 59.437 50.000 0.00 0.00 46.06 3.41
3812 4158 1.071542 GTTTGGGTGGGGACAAAATGG 59.928 52.381 0.00 0.00 46.06 3.16
3813 4159 1.765314 TGTTTGGGTGGGGACAAAATG 59.235 47.619 0.00 0.00 46.06 2.32
3814 4160 1.765904 GTGTTTGGGTGGGGACAAAAT 59.234 47.619 0.00 0.00 46.06 1.82
3815 4161 1.196012 GTGTTTGGGTGGGGACAAAA 58.804 50.000 0.00 0.00 46.06 2.44
3816 4162 0.688087 GGTGTTTGGGTGGGGACAAA 60.688 55.000 0.00 0.00 46.06 2.83
3817 4163 1.075896 GGTGTTTGGGTGGGGACAA 60.076 57.895 0.00 0.00 46.06 3.18
3818 4164 2.317378 TGGTGTTTGGGTGGGGACA 61.317 57.895 0.00 0.00 38.70 4.02
3819 4165 1.830847 GTGGTGTTTGGGTGGGGAC 60.831 63.158 0.00 0.00 0.00 4.46
3820 4166 2.604152 GTGGTGTTTGGGTGGGGA 59.396 61.111 0.00 0.00 0.00 4.81
3821 4167 2.523168 GGTGGTGTTTGGGTGGGG 60.523 66.667 0.00 0.00 0.00 4.96
3822 4168 1.075600 AAGGTGGTGTTTGGGTGGG 60.076 57.895 0.00 0.00 0.00 4.61
3823 4169 1.112916 GGAAGGTGGTGTTTGGGTGG 61.113 60.000 0.00 0.00 0.00 4.61
3824 4170 1.112916 GGGAAGGTGGTGTTTGGGTG 61.113 60.000 0.00 0.00 0.00 4.61
3825 4171 1.231928 GGGAAGGTGGTGTTTGGGT 59.768 57.895 0.00 0.00 0.00 4.51
3826 4172 0.397816 TTGGGAAGGTGGTGTTTGGG 60.398 55.000 0.00 0.00 0.00 4.12
3827 4173 0.750249 GTTGGGAAGGTGGTGTTTGG 59.250 55.000 0.00 0.00 0.00 3.28
3828 4174 0.750249 GGTTGGGAAGGTGGTGTTTG 59.250 55.000 0.00 0.00 0.00 2.93
3829 4175 0.336737 TGGTTGGGAAGGTGGTGTTT 59.663 50.000 0.00 0.00 0.00 2.83
3830 4176 0.396556 GTGGTTGGGAAGGTGGTGTT 60.397 55.000 0.00 0.00 0.00 3.32
3831 4177 1.229076 GTGGTTGGGAAGGTGGTGT 59.771 57.895 0.00 0.00 0.00 4.16
3832 4178 0.106217 AAGTGGTTGGGAAGGTGGTG 60.106 55.000 0.00 0.00 0.00 4.17
3833 4179 0.106217 CAAGTGGTTGGGAAGGTGGT 60.106 55.000 0.00 0.00 0.00 4.16
3834 4180 0.184933 TCAAGTGGTTGGGAAGGTGG 59.815 55.000 0.00 0.00 34.09 4.61
3835 4181 1.609208 CTCAAGTGGTTGGGAAGGTG 58.391 55.000 0.00 0.00 36.03 4.00
3836 4182 0.478507 CCTCAAGTGGTTGGGAAGGT 59.521 55.000 0.00 0.00 36.03 3.50
3837 4183 0.478507 ACCTCAAGTGGTTGGGAAGG 59.521 55.000 0.00 0.00 36.03 3.46
3838 4184 1.609208 CACCTCAAGTGGTTGGGAAG 58.391 55.000 0.00 0.00 43.26 3.46
3839 4185 3.819245 CACCTCAAGTGGTTGGGAA 57.181 52.632 0.00 0.00 43.26 3.97
3848 4194 0.828022 TGTCCGACAACACCTCAAGT 59.172 50.000 0.00 0.00 0.00 3.16
3849 4195 1.800586 CATGTCCGACAACACCTCAAG 59.199 52.381 5.07 0.00 30.55 3.02
3850 4196 1.140052 ACATGTCCGACAACACCTCAA 59.860 47.619 5.07 0.00 30.55 3.02
3851 4197 0.756294 ACATGTCCGACAACACCTCA 59.244 50.000 5.07 0.00 30.55 3.86
3852 4198 1.148310 CACATGTCCGACAACACCTC 58.852 55.000 5.07 0.00 30.55 3.85
3853 4199 0.884704 GCACATGTCCGACAACACCT 60.885 55.000 5.07 0.00 30.55 4.00
3854 4200 1.574428 GCACATGTCCGACAACACC 59.426 57.895 5.07 0.00 30.55 4.16
3855 4201 1.574428 GGCACATGTCCGACAACAC 59.426 57.895 5.07 0.00 30.55 3.32
3856 4202 1.599518 GGGCACATGTCCGACAACA 60.600 57.895 5.07 0.00 0.00 3.33
3857 4203 2.332654 GGGGCACATGTCCGACAAC 61.333 63.158 5.07 0.00 41.79 3.32
3858 4204 2.033448 GGGGCACATGTCCGACAA 59.967 61.111 5.07 0.00 41.79 3.18
3859 4205 4.386951 CGGGGCACATGTCCGACA 62.387 66.667 17.19 3.10 45.96 4.35
3863 4209 4.796495 GGTCCGGGGCACATGTCC 62.796 72.222 0.00 0.06 39.63 4.02
3881 4227 4.918129 TAATCGGCTCGGCGCGAC 62.918 66.667 12.10 5.80 40.44 5.19
3882 4228 4.196108 TTAATCGGCTCGGCGCGA 62.196 61.111 12.10 10.28 40.44 5.87
3883 4229 3.984765 GTTAATCGGCTCGGCGCG 61.985 66.667 0.00 0.00 40.44 6.86
3884 4230 3.637030 GGTTAATCGGCTCGGCGC 61.637 66.667 0.00 0.00 38.13 6.53
3885 4231 2.965462 GGGTTAATCGGCTCGGCG 60.965 66.667 0.00 0.00 0.00 6.46
3886 4232 2.965462 CGGGTTAATCGGCTCGGC 60.965 66.667 0.00 0.00 0.00 5.54
3887 4233 2.279918 CCGGGTTAATCGGCTCGG 60.280 66.667 0.00 0.00 41.07 4.63
3904 4250 1.668151 GACACCGACAGAAGGGCAC 60.668 63.158 0.00 0.00 0.00 5.01
3905 4251 1.691195 TTGACACCGACAGAAGGGCA 61.691 55.000 0.00 0.00 0.00 5.36
3906 4252 0.534203 TTTGACACCGACAGAAGGGC 60.534 55.000 0.00 0.00 0.00 5.19
3907 4253 1.602377 GTTTTGACACCGACAGAAGGG 59.398 52.381 0.00 0.00 0.00 3.95
3908 4254 2.287915 CAGTTTTGACACCGACAGAAGG 59.712 50.000 0.00 0.00 0.00 3.46
3909 4255 2.287915 CCAGTTTTGACACCGACAGAAG 59.712 50.000 0.00 0.00 0.00 2.85
3910 4256 2.285083 CCAGTTTTGACACCGACAGAA 58.715 47.619 0.00 0.00 0.00 3.02
3911 4257 1.948104 CCAGTTTTGACACCGACAGA 58.052 50.000 0.00 0.00 0.00 3.41
3912 4258 0.307760 GCCAGTTTTGACACCGACAG 59.692 55.000 0.00 0.00 0.00 3.51
3913 4259 0.393132 TGCCAGTTTTGACACCGACA 60.393 50.000 0.00 0.00 0.00 4.35
3914 4260 0.307760 CTGCCAGTTTTGACACCGAC 59.692 55.000 0.00 0.00 0.00 4.79
3915 4261 0.179234 TCTGCCAGTTTTGACACCGA 59.821 50.000 0.00 0.00 0.00 4.69
3916 4262 1.197721 GATCTGCCAGTTTTGACACCG 59.802 52.381 0.00 0.00 0.00 4.94
3917 4263 2.485814 GAGATCTGCCAGTTTTGACACC 59.514 50.000 0.00 0.00 0.00 4.16
3918 4264 2.158449 CGAGATCTGCCAGTTTTGACAC 59.842 50.000 0.00 0.00 0.00 3.67
3919 4265 2.416747 CGAGATCTGCCAGTTTTGACA 58.583 47.619 0.00 0.00 0.00 3.58
3920 4266 1.734465 CCGAGATCTGCCAGTTTTGAC 59.266 52.381 0.00 0.00 0.00 3.18
3921 4267 1.623311 TCCGAGATCTGCCAGTTTTGA 59.377 47.619 0.00 0.00 0.00 2.69
3922 4268 2.099141 TCCGAGATCTGCCAGTTTTG 57.901 50.000 0.00 0.00 0.00 2.44
3923 4269 3.181461 CCTATCCGAGATCTGCCAGTTTT 60.181 47.826 0.00 0.00 0.00 2.43
3924 4270 2.366916 CCTATCCGAGATCTGCCAGTTT 59.633 50.000 0.00 0.00 0.00 2.66
3925 4271 1.967066 CCTATCCGAGATCTGCCAGTT 59.033 52.381 0.00 0.00 0.00 3.16
3926 4272 1.133325 ACCTATCCGAGATCTGCCAGT 60.133 52.381 0.00 0.00 0.00 4.00
3927 4273 1.271934 CACCTATCCGAGATCTGCCAG 59.728 57.143 0.00 0.00 0.00 4.85
3928 4274 1.332195 CACCTATCCGAGATCTGCCA 58.668 55.000 0.00 0.00 0.00 4.92
3929 4275 0.605589 CCACCTATCCGAGATCTGCC 59.394 60.000 0.00 0.00 0.00 4.85
3930 4276 1.271102 GACCACCTATCCGAGATCTGC 59.729 57.143 0.00 0.00 0.00 4.26
3931 4277 1.889829 GGACCACCTATCCGAGATCTG 59.110 57.143 0.00 0.00 0.00 2.90
3932 4278 1.203075 GGGACCACCTATCCGAGATCT 60.203 57.143 0.00 0.00 37.08 2.75
3933 4279 1.258676 GGGACCACCTATCCGAGATC 58.741 60.000 0.00 0.00 37.08 2.75
3934 4280 0.561184 TGGGACCACCTATCCGAGAT 59.439 55.000 0.00 0.00 41.11 2.75
3935 4281 0.337082 TTGGGACCACCTATCCGAGA 59.663 55.000 0.00 0.00 41.11 4.04
3936 4282 0.753262 CTTGGGACCACCTATCCGAG 59.247 60.000 0.00 0.00 41.11 4.63
3937 4283 1.335132 GCTTGGGACCACCTATCCGA 61.335 60.000 0.00 0.00 41.11 4.55
3938 4284 1.146263 GCTTGGGACCACCTATCCG 59.854 63.158 0.00 0.00 41.11 4.18
3939 4285 0.181350 CAGCTTGGGACCACCTATCC 59.819 60.000 0.00 0.00 41.11 2.59
3940 4286 0.912486 ACAGCTTGGGACCACCTATC 59.088 55.000 0.00 0.00 41.11 2.08
3941 4287 0.620556 CACAGCTTGGGACCACCTAT 59.379 55.000 0.00 0.00 41.11 2.57
3942 4288 0.766674 ACACAGCTTGGGACCACCTA 60.767 55.000 0.00 0.00 41.11 3.08
3943 4289 0.766674 TACACAGCTTGGGACCACCT 60.767 55.000 0.00 0.00 41.11 4.00
3944 4290 0.328258 ATACACAGCTTGGGACCACC 59.672 55.000 0.00 0.00 40.81 4.61
3945 4291 1.279271 AGATACACAGCTTGGGACCAC 59.721 52.381 0.00 0.00 0.00 4.16
3946 4292 1.278985 CAGATACACAGCTTGGGACCA 59.721 52.381 0.00 0.00 0.00 4.02
3947 4293 1.555075 TCAGATACACAGCTTGGGACC 59.445 52.381 0.00 0.00 0.00 4.46
3948 4294 2.622436 GTCAGATACACAGCTTGGGAC 58.378 52.381 0.00 0.00 0.00 4.46
3949 4295 1.204704 CGTCAGATACACAGCTTGGGA 59.795 52.381 0.00 0.00 0.00 4.37
3950 4296 1.204704 TCGTCAGATACACAGCTTGGG 59.795 52.381 0.00 0.00 0.00 4.12
3951 4297 2.654749 TCGTCAGATACACAGCTTGG 57.345 50.000 0.00 0.00 0.00 3.61
3952 4298 2.786027 CGATCGTCAGATACACAGCTTG 59.214 50.000 7.03 0.00 37.19 4.01
3953 4299 2.683362 TCGATCGTCAGATACACAGCTT 59.317 45.455 15.94 0.00 37.19 3.74
3954 4300 2.289565 TCGATCGTCAGATACACAGCT 58.710 47.619 15.94 0.00 37.19 4.24
3955 4301 2.757686 TCGATCGTCAGATACACAGC 57.242 50.000 15.94 0.00 37.19 4.40
3956 4302 3.003793 ACCATCGATCGTCAGATACACAG 59.996 47.826 15.94 0.00 37.19 3.66
3957 4303 2.949644 ACCATCGATCGTCAGATACACA 59.050 45.455 15.94 0.00 37.19 3.72
3958 4304 3.627732 ACCATCGATCGTCAGATACAC 57.372 47.619 15.94 0.00 37.19 2.90
3959 4305 4.319261 CGTTACCATCGATCGTCAGATACA 60.319 45.833 15.94 0.00 37.19 2.29
3960 4306 4.084171 TCGTTACCATCGATCGTCAGATAC 60.084 45.833 15.94 7.42 37.19 2.24
3961 4307 4.060205 TCGTTACCATCGATCGTCAGATA 58.940 43.478 15.94 0.00 37.19 1.98
3962 4308 2.876550 TCGTTACCATCGATCGTCAGAT 59.123 45.455 15.94 0.00 40.38 2.90
3963 4309 2.282407 TCGTTACCATCGATCGTCAGA 58.718 47.619 15.94 0.00 32.30 3.27
3964 4310 2.602456 CCTCGTTACCATCGATCGTCAG 60.602 54.545 15.94 7.21 36.73 3.51
3965 4311 1.332686 CCTCGTTACCATCGATCGTCA 59.667 52.381 15.94 0.00 36.73 4.35
3966 4312 1.334779 CCCTCGTTACCATCGATCGTC 60.335 57.143 15.94 0.00 36.73 4.20
3967 4313 0.666913 CCCTCGTTACCATCGATCGT 59.333 55.000 15.94 0.28 36.73 3.73
3968 4314 0.949397 TCCCTCGTTACCATCGATCG 59.051 55.000 9.36 9.36 36.73 3.69
3969 4315 1.679680 TGTCCCTCGTTACCATCGATC 59.320 52.381 0.00 0.00 36.73 3.69
3970 4316 1.407979 GTGTCCCTCGTTACCATCGAT 59.592 52.381 0.00 0.00 36.73 3.59
3971 4317 0.813184 GTGTCCCTCGTTACCATCGA 59.187 55.000 0.00 0.00 35.96 3.59
3972 4318 0.528924 TGTGTCCCTCGTTACCATCG 59.471 55.000 0.00 0.00 0.00 3.84
3973 4319 2.618053 CTTGTGTCCCTCGTTACCATC 58.382 52.381 0.00 0.00 0.00 3.51
3974 4320 1.278127 CCTTGTGTCCCTCGTTACCAT 59.722 52.381 0.00 0.00 0.00 3.55
3975 4321 0.682852 CCTTGTGTCCCTCGTTACCA 59.317 55.000 0.00 0.00 0.00 3.25
3976 4322 0.036671 CCCTTGTGTCCCTCGTTACC 60.037 60.000 0.00 0.00 0.00 2.85
3977 4323 0.971386 TCCCTTGTGTCCCTCGTTAC 59.029 55.000 0.00 0.00 0.00 2.50
3978 4324 0.971386 GTCCCTTGTGTCCCTCGTTA 59.029 55.000 0.00 0.00 0.00 3.18
3979 4325 1.052124 TGTCCCTTGTGTCCCTCGTT 61.052 55.000 0.00 0.00 0.00 3.85
3980 4326 1.458777 TGTCCCTTGTGTCCCTCGT 60.459 57.895 0.00 0.00 0.00 4.18
3981 4327 1.004918 GTGTCCCTTGTGTCCCTCG 60.005 63.158 0.00 0.00 0.00 4.63
3982 4328 0.472471 TTGTGTCCCTTGTGTCCCTC 59.528 55.000 0.00 0.00 0.00 4.30
3983 4329 1.149101 ATTGTGTCCCTTGTGTCCCT 58.851 50.000 0.00 0.00 0.00 4.20
3984 4330 1.247567 CATTGTGTCCCTTGTGTCCC 58.752 55.000 0.00 0.00 0.00 4.46
3985 4331 1.981256 ACATTGTGTCCCTTGTGTCC 58.019 50.000 0.00 0.00 0.00 4.02
3986 4332 4.385358 AAAACATTGTGTCCCTTGTGTC 57.615 40.909 0.00 0.00 0.00 3.67
3987 4333 4.098807 GGTAAAACATTGTGTCCCTTGTGT 59.901 41.667 0.00 0.00 0.00 3.72
3988 4334 4.098654 TGGTAAAACATTGTGTCCCTTGTG 59.901 41.667 0.00 0.00 0.00 3.33
3989 4335 4.282496 TGGTAAAACATTGTGTCCCTTGT 58.718 39.130 0.00 0.00 0.00 3.16
3990 4336 4.927978 TGGTAAAACATTGTGTCCCTTG 57.072 40.909 0.00 0.00 0.00 3.61
3991 4337 4.343814 CCTTGGTAAAACATTGTGTCCCTT 59.656 41.667 0.00 0.00 0.00 3.95
3992 4338 3.895041 CCTTGGTAAAACATTGTGTCCCT 59.105 43.478 0.00 0.00 0.00 4.20
3993 4339 3.639561 ACCTTGGTAAAACATTGTGTCCC 59.360 43.478 0.00 0.00 0.00 4.46
3994 4340 4.929819 ACCTTGGTAAAACATTGTGTCC 57.070 40.909 0.00 0.00 0.00 4.02
3995 4341 5.897050 TGAACCTTGGTAAAACATTGTGTC 58.103 37.500 0.00 0.00 0.00 3.67
3996 4342 5.163457 CCTGAACCTTGGTAAAACATTGTGT 60.163 40.000 0.00 0.00 0.00 3.72
3997 4343 5.288804 CCTGAACCTTGGTAAAACATTGTG 58.711 41.667 0.00 0.00 0.00 3.33
3998 4344 4.202212 GCCTGAACCTTGGTAAAACATTGT 60.202 41.667 0.00 0.00 0.00 2.71
3999 4345 4.306600 GCCTGAACCTTGGTAAAACATTG 58.693 43.478 0.00 0.00 0.00 2.82
4000 4346 3.323691 GGCCTGAACCTTGGTAAAACATT 59.676 43.478 0.00 0.00 0.00 2.71
4001 4347 2.897326 GGCCTGAACCTTGGTAAAACAT 59.103 45.455 0.00 0.00 0.00 2.71
4002 4348 2.312390 GGCCTGAACCTTGGTAAAACA 58.688 47.619 0.00 0.00 0.00 2.83
4003 4349 1.616865 GGGCCTGAACCTTGGTAAAAC 59.383 52.381 0.84 0.00 0.00 2.43
4004 4350 1.501604 AGGGCCTGAACCTTGGTAAAA 59.498 47.619 4.50 0.00 33.64 1.52
4005 4351 1.074889 GAGGGCCTGAACCTTGGTAAA 59.925 52.381 12.95 0.00 38.79 2.01
4006 4352 0.696501 GAGGGCCTGAACCTTGGTAA 59.303 55.000 12.95 0.00 38.79 2.85
4007 4353 0.178873 AGAGGGCCTGAACCTTGGTA 60.179 55.000 12.95 0.00 38.79 3.25
4008 4354 1.068352 AAGAGGGCCTGAACCTTGGT 61.068 55.000 12.95 0.00 38.79 3.67
4009 4355 0.991920 TAAGAGGGCCTGAACCTTGG 59.008 55.000 12.95 0.00 38.79 3.61
4010 4356 2.879103 TTAAGAGGGCCTGAACCTTG 57.121 50.000 12.95 0.00 38.79 3.61
4011 4357 2.041755 CCTTTAAGAGGGCCTGAACCTT 59.958 50.000 12.95 10.93 42.26 3.50
4012 4358 1.636003 CCTTTAAGAGGGCCTGAACCT 59.364 52.381 12.95 0.00 42.26 3.50
4013 4359 1.633945 TCCTTTAAGAGGGCCTGAACC 59.366 52.381 12.95 0.00 46.31 3.62
4014 4360 2.992593 CTCCTTTAAGAGGGCCTGAAC 58.007 52.381 12.95 0.00 46.31 3.18
4023 4369 6.104665 CGTAGGGTTTTACCTCCTTTAAGAG 58.895 44.000 0.00 0.00 42.09 2.85
4024 4370 5.543790 ACGTAGGGTTTTACCTCCTTTAAGA 59.456 40.000 0.00 0.00 42.09 2.10
4025 4371 5.798132 ACGTAGGGTTTTACCTCCTTTAAG 58.202 41.667 0.00 0.00 42.09 1.85
4026 4372 5.279960 GGACGTAGGGTTTTACCTCCTTTAA 60.280 44.000 0.00 0.00 42.09 1.52
4027 4373 4.222810 GGACGTAGGGTTTTACCTCCTTTA 59.777 45.833 0.00 0.00 42.09 1.85
4028 4374 3.008375 GGACGTAGGGTTTTACCTCCTTT 59.992 47.826 0.00 0.00 42.09 3.11
4029 4375 2.568956 GGACGTAGGGTTTTACCTCCTT 59.431 50.000 0.00 0.00 42.09 3.36
4030 4376 2.182827 GGACGTAGGGTTTTACCTCCT 58.817 52.381 0.00 0.00 42.09 3.69
4031 4377 2.093816 CAGGACGTAGGGTTTTACCTCC 60.094 54.545 0.00 0.00 42.09 4.30
4032 4378 2.676176 GCAGGACGTAGGGTTTTACCTC 60.676 54.545 0.00 0.00 42.09 3.85
4033 4379 1.277273 GCAGGACGTAGGGTTTTACCT 59.723 52.381 0.00 0.00 44.75 3.08
4034 4380 1.277273 AGCAGGACGTAGGGTTTTACC 59.723 52.381 0.00 0.00 37.60 2.85
4035 4381 2.740447 CAAGCAGGACGTAGGGTTTTAC 59.260 50.000 0.00 0.00 0.00 2.01
4036 4382 2.633967 TCAAGCAGGACGTAGGGTTTTA 59.366 45.455 0.00 0.00 0.00 1.52
4037 4383 1.418637 TCAAGCAGGACGTAGGGTTTT 59.581 47.619 0.00 0.00 0.00 2.43
4038 4384 1.053424 TCAAGCAGGACGTAGGGTTT 58.947 50.000 0.00 0.00 0.00 3.27
4039 4385 1.276622 ATCAAGCAGGACGTAGGGTT 58.723 50.000 0.00 0.00 0.00 4.11
4040 4386 1.276622 AATCAAGCAGGACGTAGGGT 58.723 50.000 0.00 0.00 0.00 4.34
4041 4387 3.753294 ATAATCAAGCAGGACGTAGGG 57.247 47.619 0.00 0.00 0.00 3.53
4042 4388 5.573282 CGAATATAATCAAGCAGGACGTAGG 59.427 44.000 0.00 0.00 0.00 3.18
4043 4389 6.379386 TCGAATATAATCAAGCAGGACGTAG 58.621 40.000 0.00 0.00 0.00 3.51
4044 4390 6.321848 TCGAATATAATCAAGCAGGACGTA 57.678 37.500 0.00 0.00 0.00 3.57
4045 4391 5.196341 TCGAATATAATCAAGCAGGACGT 57.804 39.130 0.00 0.00 0.00 4.34
4046 4392 5.635280 ACATCGAATATAATCAAGCAGGACG 59.365 40.000 0.00 0.00 0.00 4.79
4047 4393 6.425114 ACACATCGAATATAATCAAGCAGGAC 59.575 38.462 0.00 0.00 0.00 3.85
4048 4394 6.524734 ACACATCGAATATAATCAAGCAGGA 58.475 36.000 0.00 0.00 0.00 3.86
4049 4395 6.791887 ACACATCGAATATAATCAAGCAGG 57.208 37.500 0.00 0.00 0.00 4.85
4060 4406 9.706691 CTTGTAACCCTTATACACATCGAATAT 57.293 33.333 0.00 0.00 33.22 1.28
4061 4407 8.916062 TCTTGTAACCCTTATACACATCGAATA 58.084 33.333 0.00 0.00 33.22 1.75
4062 4408 7.788026 TCTTGTAACCCTTATACACATCGAAT 58.212 34.615 0.00 0.00 33.22 3.34
4063 4409 7.093640 ACTCTTGTAACCCTTATACACATCGAA 60.094 37.037 0.00 0.00 33.22 3.71
4064 4410 6.379133 ACTCTTGTAACCCTTATACACATCGA 59.621 38.462 0.00 0.00 33.22 3.59
4065 4411 6.570692 ACTCTTGTAACCCTTATACACATCG 58.429 40.000 0.00 0.00 33.22 3.84
4066 4412 8.038944 TCAACTCTTGTAACCCTTATACACATC 58.961 37.037 0.00 0.00 33.22 3.06
4067 4413 7.913789 TCAACTCTTGTAACCCTTATACACAT 58.086 34.615 0.00 0.00 33.22 3.21
4068 4414 7.305813 TCAACTCTTGTAACCCTTATACACA 57.694 36.000 0.00 0.00 33.22 3.72
4069 4415 8.258708 AGATCAACTCTTGTAACCCTTATACAC 58.741 37.037 0.00 0.00 33.22 2.90
4070 4416 8.375493 AGATCAACTCTTGTAACCCTTATACA 57.625 34.615 0.00 0.00 0.00 2.29
4071 4417 9.747293 GTAGATCAACTCTTGTAACCCTTATAC 57.253 37.037 0.00 0.00 35.28 1.47
4072 4418 8.921205 GGTAGATCAACTCTTGTAACCCTTATA 58.079 37.037 0.00 0.00 35.28 0.98
4073 4419 7.624077 AGGTAGATCAACTCTTGTAACCCTTAT 59.376 37.037 0.00 0.00 35.28 1.73
4074 4420 6.958192 AGGTAGATCAACTCTTGTAACCCTTA 59.042 38.462 0.00 0.00 35.28 2.69
4075 4421 5.785940 AGGTAGATCAACTCTTGTAACCCTT 59.214 40.000 0.00 0.00 35.28 3.95
4076 4422 5.342866 AGGTAGATCAACTCTTGTAACCCT 58.657 41.667 0.00 0.00 35.28 4.34
4077 4423 5.187186 TGAGGTAGATCAACTCTTGTAACCC 59.813 44.000 10.33 0.00 35.28 4.11
4078 4424 6.282199 TGAGGTAGATCAACTCTTGTAACC 57.718 41.667 10.33 0.00 35.28 2.85
4079 4425 7.603651 TCTTGAGGTAGATCAACTCTTGTAAC 58.396 38.462 10.33 0.00 35.40 2.50
4080 4426 7.776618 TCTTGAGGTAGATCAACTCTTGTAA 57.223 36.000 10.33 0.00 35.40 2.41
4081 4427 7.962995 ATCTTGAGGTAGATCAACTCTTGTA 57.037 36.000 10.33 0.00 35.40 2.41
4082 4428 6.865834 ATCTTGAGGTAGATCAACTCTTGT 57.134 37.500 10.33 0.00 35.40 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.