Multiple sequence alignment - TraesCS3A01G347400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G347400 chr3A 100.000 2321 0 0 1 2321 596501144 596503464 0.000000e+00 4287
1 TraesCS3A01G347400 chr3D 89.724 1664 118 22 495 2143 454500249 454501874 0.000000e+00 2076
2 TraesCS3A01G347400 chr3D 89.831 354 19 5 1 341 454499492 454499841 2.740000e-119 438
3 TraesCS3A01G347400 chr3D 81.743 241 40 2 2081 2321 498213543 498213307 5.060000e-47 198
4 TraesCS3A01G347400 chr3D 76.608 342 74 4 1981 2321 10007179 10007515 1.420000e-42 183
5 TraesCS3A01G347400 chr3D 94.118 102 6 0 396 497 454499827 454499928 3.090000e-34 156
6 TraesCS3A01G347400 chr3B 87.192 1382 82 40 395 1758 597047815 597049119 0.000000e+00 1483
7 TraesCS3A01G347400 chr3B 91.143 350 18 3 1 341 597047485 597047830 1.620000e-126 462
8 TraesCS3A01G347400 chr6B 78.841 345 61 9 1981 2321 545278034 545278370 3.000000e-54 222
9 TraesCS3A01G347400 chr7A 77.778 342 67 6 1981 2321 17596776 17596443 3.910000e-48 202
10 TraesCS3A01G347400 chr1D 78.507 335 53 8 1990 2321 399935884 399935566 3.910000e-48 202
11 TraesCS3A01G347400 chr1D 79.464 224 39 5 1980 2202 462364381 462364164 3.990000e-33 152
12 TraesCS3A01G347400 chr5B 77.419 341 71 4 1982 2321 418507024 418507359 5.060000e-47 198
13 TraesCS3A01G347400 chr5B 77.705 305 54 11 1988 2284 704418510 704418212 8.520000e-40 174
14 TraesCS3A01G347400 chr5A 76.648 364 70 12 1963 2321 559813648 559813295 1.090000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G347400 chr3A 596501144 596503464 2320 False 4287.0 4287 100.000000 1 2321 1 chr3A.!!$F1 2320
1 TraesCS3A01G347400 chr3D 454499492 454501874 2382 False 890.0 2076 91.224333 1 2143 3 chr3D.!!$F2 2142
2 TraesCS3A01G347400 chr3B 597047485 597049119 1634 False 972.5 1483 89.167500 1 1758 2 chr3B.!!$F1 1757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 223 0.96738 CCCCTGGTTTGTCATGCTCC 60.967 60.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2077 2434 0.249489 GCTAGACGCACCATCGGAAT 60.249 55.0 0.0 0.0 38.92 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 123 3.894257 CCGCGATGGTGACTGATAT 57.106 52.632 8.23 0.00 0.00 1.63
127 137 8.189119 TGGTGACTGATATTGTATAGTATGCA 57.811 34.615 0.00 0.00 0.00 3.96
133 143 9.784531 ACTGATATTGTATAGTATGCAAAAGCT 57.215 29.630 16.24 4.33 38.34 3.74
157 167 4.202161 TGCTGACGGATAGATTCTTCCTTC 60.202 45.833 11.25 11.25 32.42 3.46
193 205 5.348451 GTCACCATTTTGACATTGTTATGCC 59.652 40.000 0.00 0.00 44.62 4.40
211 223 0.967380 CCCCTGGTTTGTCATGCTCC 60.967 60.000 0.00 0.00 0.00 4.70
312 327 6.680338 GTCATCTTTCATCGATTCTTTTCGTG 59.320 38.462 0.00 0.00 40.03 4.35
341 356 7.061326 GCACGTTACTAGAAGAAGAAGAAGAAG 59.939 40.741 0.00 0.00 0.00 2.85
342 357 8.291032 CACGTTACTAGAAGAAGAAGAAGAAGA 58.709 37.037 0.00 0.00 0.00 2.87
343 358 8.848182 ACGTTACTAGAAGAAGAAGAAGAAGAA 58.152 33.333 0.00 0.00 0.00 2.52
344 359 9.337091 CGTTACTAGAAGAAGAAGAAGAAGAAG 57.663 37.037 0.00 0.00 0.00 2.85
348 363 9.362151 ACTAGAAGAAGAAGAAGAAGAAGAAGA 57.638 33.333 0.00 0.00 0.00 2.87
351 366 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
352 367 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
353 368 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
354 369 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
355 370 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
356 371 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
357 372 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
358 373 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
359 374 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
360 375 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
361 376 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
362 377 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
363 378 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
364 379 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
365 380 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
366 381 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
367 382 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
368 383 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
369 384 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
370 385 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
371 386 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
372 387 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
373 388 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
374 389 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
375 390 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
376 391 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
377 392 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
378 393 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
379 394 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
380 395 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
381 396 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
382 397 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
383 398 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
384 399 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
385 400 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
386 401 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
387 402 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
388 403 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
389 404 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
390 405 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
391 406 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
392 407 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
393 408 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
394 409 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
395 410 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
396 411 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
397 412 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
398 413 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
399 414 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
400 415 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
401 416 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
402 417 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
403 418 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
404 419 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
405 420 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
406 421 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
407 422 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
408 423 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
409 424 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
450 465 2.809696 GAGAGGCTCCTACTATGACGAC 59.190 54.545 11.71 0.00 0.00 4.34
502 840 7.862675 AGCCTCTGGTTAAAGAATAATGTACT 58.137 34.615 0.00 0.00 0.00 2.73
504 842 9.262358 GCCTCTGGTTAAAGAATAATGTACTAG 57.738 37.037 0.00 0.00 0.00 2.57
551 889 2.611292 CAGAAAGATTTAGCTGGAGCCG 59.389 50.000 0.00 0.00 43.38 5.52
577 915 4.687018 TCAAAAGTAGATTCTTGCGCGTTA 59.313 37.500 8.43 0.00 0.00 3.18
585 923 2.081725 TCTTGCGCGTTACATGGTAA 57.918 45.000 8.43 0.00 0.00 2.85
646 984 1.648302 ATGCTCCAATGCCCTGCCTA 61.648 55.000 0.00 0.00 0.00 3.93
647 985 1.152368 GCTCCAATGCCCTGCCTAT 59.848 57.895 0.00 0.00 0.00 2.57
648 986 1.177256 GCTCCAATGCCCTGCCTATG 61.177 60.000 0.00 0.00 0.00 2.23
976 1318 5.468540 TGTATGTGAAGAACTACTGTGCT 57.531 39.130 0.00 0.00 32.20 4.40
1100 1442 2.031314 TCAAGACGATCGATGGTACGAC 59.969 50.000 24.34 5.87 44.84 4.34
1101 1443 0.580578 AGACGATCGATGGTACGACG 59.419 55.000 24.34 5.97 44.84 5.12
1102 1444 0.578683 GACGATCGATGGTACGACGA 59.421 55.000 24.34 9.33 44.84 4.20
1109 1451 1.734707 CGATGGTACGACGAAAGCCTT 60.735 52.381 0.00 0.00 35.09 4.35
1110 1452 1.925185 GATGGTACGACGAAAGCCTTC 59.075 52.381 0.00 2.39 0.00 3.46
1142 1484 6.513180 TCGACATAAAACAGTCTCACTTTCT 58.487 36.000 0.00 0.00 32.68 2.52
1143 1485 6.420903 TCGACATAAAACAGTCTCACTTTCTG 59.579 38.462 0.00 0.00 32.68 3.02
1144 1486 6.305693 ACATAAAACAGTCTCACTTTCTGC 57.694 37.500 0.00 0.00 33.12 4.26
1146 1488 4.889832 AAAACAGTCTCACTTTCTGCAG 57.110 40.909 7.63 7.63 33.12 4.41
1341 1693 0.251634 GAACAGAGCCCAGAGGAAGG 59.748 60.000 0.00 0.00 33.47 3.46
1359 1711 2.380410 GCGAGCCACACGGTAACAG 61.380 63.158 0.00 0.00 33.28 3.16
1386 1738 1.135170 GTTACTGGGAGTGCGGACTAC 60.135 57.143 11.49 11.49 30.16 2.73
1454 1806 3.177228 ACCATGGGATATCAGGAGCTAC 58.823 50.000 18.09 0.00 0.00 3.58
1468 1820 3.772025 AGGAGCTACTTGTACTGCAGATT 59.228 43.478 23.35 0.27 0.00 2.40
1477 1829 6.010219 ACTTGTACTGCAGATTGGGTAATTT 58.990 36.000 23.35 0.00 0.00 1.82
1481 1833 3.515104 ACTGCAGATTGGGTAATTTTGGG 59.485 43.478 23.35 0.00 0.00 4.12
1500 1852 3.296854 GGGGAGTTTCTTTGAACTGGTT 58.703 45.455 0.00 0.00 39.84 3.67
1505 1857 4.936891 AGTTTCTTTGAACTGGTTGATGC 58.063 39.130 0.00 0.00 38.39 3.91
1509 1861 0.961019 TTGAACTGGTTGATGCTGGC 59.039 50.000 0.00 0.00 0.00 4.85
1523 1875 1.153469 CTGGCTCTTCCCTCGCTTC 60.153 63.158 0.00 0.00 0.00 3.86
1540 1894 0.105964 TTCATCCTATTGACCGCGGG 59.894 55.000 31.76 11.88 0.00 6.13
1557 1911 1.890510 GGGTCCTCGTGTTGCGTTT 60.891 57.895 0.00 0.00 42.13 3.60
1562 1916 1.862201 TCCTCGTGTTGCGTTTAACTG 59.138 47.619 0.00 0.00 42.13 3.16
1563 1917 1.658968 CTCGTGTTGCGTTTAACTGC 58.341 50.000 5.31 5.31 42.13 4.40
1618 1974 4.553330 TGTAGAGGATGAACCCAACTTC 57.447 45.455 0.00 0.00 40.05 3.01
1620 1976 5.338632 TGTAGAGGATGAACCCAACTTCTA 58.661 41.667 0.00 0.00 40.05 2.10
1674 2030 6.992664 AGAGTGATATAGCTGTCAGGATTT 57.007 37.500 1.14 0.00 0.00 2.17
1694 2050 7.761249 AGGATTTGTTTCAGACTTTCAGTTTTG 59.239 33.333 0.00 0.00 0.00 2.44
1785 2141 0.671781 CGAGTAGCAAGCAAGCCACT 60.672 55.000 1.49 1.49 39.17 4.00
1797 2153 2.360165 GCAAGCCACTCCTTATCCATTG 59.640 50.000 0.00 0.00 0.00 2.82
1806 2162 5.008415 CACTCCTTATCCATTGAGCAATCAC 59.992 44.000 0.00 0.00 0.00 3.06
1870 2226 4.459337 TCGACATCGATCCAACTATATGCT 59.541 41.667 0.00 0.00 44.22 3.79
1871 2227 5.646360 TCGACATCGATCCAACTATATGCTA 59.354 40.000 0.00 0.00 44.22 3.49
1953 2309 6.637254 AGATCAAACACATCTATTAGTACGCG 59.363 38.462 3.53 3.53 0.00 6.01
1960 2316 6.417044 ACACATCTATTAGTACGCGATTCAAC 59.583 38.462 15.93 2.45 0.00 3.18
1965 2321 2.509786 TACGCGATTCAACCGGCC 60.510 61.111 15.93 0.00 0.00 6.13
1970 2326 2.822701 GATTCAACCGGCCCCGTC 60.823 66.667 0.00 0.00 37.81 4.79
1972 2328 1.963464 GATTCAACCGGCCCCGTCTA 61.963 60.000 0.00 0.00 37.81 2.59
1976 2332 1.075748 AACCGGCCCCGTCTATAGT 60.076 57.895 0.00 0.00 37.81 2.12
1978 2334 0.688749 ACCGGCCCCGTCTATAGTTT 60.689 55.000 0.00 0.00 37.81 2.66
2009 2366 6.561737 TGAGTTTTGTTAGTGTTTGTGTCA 57.438 33.333 0.00 0.00 0.00 3.58
2011 2368 7.247728 TGAGTTTTGTTAGTGTTTGTGTCATC 58.752 34.615 0.00 0.00 0.00 2.92
2012 2369 7.120579 TGAGTTTTGTTAGTGTTTGTGTCATCT 59.879 33.333 0.00 0.00 0.00 2.90
2020 2377 5.192927 AGTGTTTGTGTCATCTTCAGGAAA 58.807 37.500 0.00 0.00 0.00 3.13
2022 2379 6.016777 AGTGTTTGTGTCATCTTCAGGAAATC 60.017 38.462 0.00 0.00 0.00 2.17
2023 2380 5.827267 TGTTTGTGTCATCTTCAGGAAATCA 59.173 36.000 0.00 0.00 0.00 2.57
2027 2384 5.702670 TGTGTCATCTTCAGGAAATCAAGAC 59.297 40.000 0.00 0.00 0.00 3.01
2028 2385 4.931601 TGTCATCTTCAGGAAATCAAGACG 59.068 41.667 0.00 0.00 0.00 4.18
2030 2387 2.699954 TCTTCAGGAAATCAAGACGGC 58.300 47.619 0.00 0.00 0.00 5.68
2032 2389 0.391130 TCAGGAAATCAAGACGGCGG 60.391 55.000 13.24 0.00 0.00 6.13
2035 2392 2.047655 AAATCAAGACGGCGGCGA 60.048 55.556 38.93 16.07 0.00 5.54
2038 2395 3.701604 ATCAAGACGGCGGCGACTC 62.702 63.158 38.93 25.26 0.00 3.36
2043 2400 4.790962 ACGGCGGCGACTCCTCTA 62.791 66.667 38.93 0.00 0.00 2.43
2046 2403 1.217244 GGCGGCGACTCCTCTAAAA 59.783 57.895 12.98 0.00 0.00 1.52
2049 2406 1.327764 GCGGCGACTCCTCTAAAAATG 59.672 52.381 12.98 0.00 0.00 2.32
2059 2416 9.595823 CGACTCCTCTAAAAATGAAATAAGGTA 57.404 33.333 0.00 0.00 0.00 3.08
2080 2437 8.794335 AGGTACTTCTTGTTTAGAATCCATTC 57.206 34.615 0.00 0.00 41.89 2.67
2081 2438 7.829706 AGGTACTTCTTGTTTAGAATCCATTCC 59.170 37.037 0.00 0.00 41.89 3.01
2083 2440 6.472887 ACTTCTTGTTTAGAATCCATTCCGA 58.527 36.000 0.00 0.00 41.89 4.55
2086 2443 6.318648 TTCTTGTTTAGAATCCATTCCGATGG 59.681 38.462 0.00 0.00 44.34 3.51
2115 2472 0.930310 CATCATCGTTAGGCGTGTGG 59.070 55.000 0.00 0.00 42.13 4.17
2126 2483 1.227556 GCGTGTGGAGGTGTGTCTT 60.228 57.895 0.00 0.00 0.00 3.01
2128 2485 0.389391 CGTGTGGAGGTGTGTCTTCT 59.611 55.000 0.00 0.00 0.00 2.85
2129 2486 1.611977 CGTGTGGAGGTGTGTCTTCTA 59.388 52.381 0.00 0.00 0.00 2.10
2131 2488 3.673594 CGTGTGGAGGTGTGTCTTCTATC 60.674 52.174 0.00 0.00 0.00 2.08
2137 2494 4.261405 GGAGGTGTGTCTTCTATCGATCTG 60.261 50.000 0.00 0.00 0.00 2.90
2143 2500 6.809196 GTGTGTCTTCTATCGATCTGTCTTTT 59.191 38.462 0.00 0.00 0.00 2.27
2144 2501 7.329717 GTGTGTCTTCTATCGATCTGTCTTTTT 59.670 37.037 0.00 0.00 0.00 1.94
2161 2518 2.652941 TTTTGATGGATTTGCTCGGC 57.347 45.000 0.00 0.00 0.00 5.54
2162 2519 1.838112 TTTGATGGATTTGCTCGGCT 58.162 45.000 0.00 0.00 0.00 5.52
2163 2520 2.708216 TTGATGGATTTGCTCGGCTA 57.292 45.000 0.00 0.00 0.00 3.93
2164 2521 2.936919 TGATGGATTTGCTCGGCTAT 57.063 45.000 0.00 0.00 0.00 2.97
2165 2522 2.497138 TGATGGATTTGCTCGGCTATG 58.503 47.619 0.00 0.00 0.00 2.23
2166 2523 1.808945 GATGGATTTGCTCGGCTATGG 59.191 52.381 0.00 0.00 0.00 2.74
2167 2524 0.546122 TGGATTTGCTCGGCTATGGT 59.454 50.000 0.00 0.00 0.00 3.55
2168 2525 1.230324 GGATTTGCTCGGCTATGGTC 58.770 55.000 0.00 0.00 0.00 4.02
2169 2526 1.475034 GGATTTGCTCGGCTATGGTCA 60.475 52.381 0.00 0.00 0.00 4.02
2170 2527 2.498167 GATTTGCTCGGCTATGGTCAT 58.502 47.619 0.00 0.00 0.00 3.06
2171 2528 2.418368 TTTGCTCGGCTATGGTCATT 57.582 45.000 0.00 0.00 0.00 2.57
2172 2529 1.667236 TTGCTCGGCTATGGTCATTG 58.333 50.000 0.00 0.00 0.00 2.82
2173 2530 0.541392 TGCTCGGCTATGGTCATTGT 59.459 50.000 0.00 0.00 0.00 2.71
2174 2531 1.065491 TGCTCGGCTATGGTCATTGTT 60.065 47.619 0.00 0.00 0.00 2.83
2175 2532 1.599542 GCTCGGCTATGGTCATTGTTC 59.400 52.381 0.00 0.00 0.00 3.18
2176 2533 1.860950 CTCGGCTATGGTCATTGTTCG 59.139 52.381 0.00 0.00 0.00 3.95
2177 2534 1.206132 TCGGCTATGGTCATTGTTCGT 59.794 47.619 0.00 0.00 0.00 3.85
2178 2535 1.593006 CGGCTATGGTCATTGTTCGTC 59.407 52.381 0.00 0.00 0.00 4.20
2179 2536 2.738643 CGGCTATGGTCATTGTTCGTCT 60.739 50.000 0.00 0.00 0.00 4.18
2180 2537 3.490249 CGGCTATGGTCATTGTTCGTCTA 60.490 47.826 0.00 0.00 0.00 2.59
2181 2538 3.802685 GGCTATGGTCATTGTTCGTCTAC 59.197 47.826 0.00 0.00 0.00 2.59
2182 2539 3.486108 GCTATGGTCATTGTTCGTCTACG 59.514 47.826 0.00 0.00 41.45 3.51
2183 2540 3.587797 ATGGTCATTGTTCGTCTACGT 57.412 42.857 2.02 0.00 40.80 3.57
2184 2541 3.374220 TGGTCATTGTTCGTCTACGTT 57.626 42.857 0.00 0.00 40.80 3.99
2185 2542 3.311106 TGGTCATTGTTCGTCTACGTTC 58.689 45.455 0.00 0.00 40.80 3.95
2186 2543 3.243468 TGGTCATTGTTCGTCTACGTTCA 60.243 43.478 0.00 1.00 40.80 3.18
2187 2544 3.924686 GGTCATTGTTCGTCTACGTTCAT 59.075 43.478 0.00 0.00 40.80 2.57
2188 2545 4.201589 GGTCATTGTTCGTCTACGTTCATG 60.202 45.833 0.00 0.00 40.80 3.07
2189 2546 4.384846 GTCATTGTTCGTCTACGTTCATGT 59.615 41.667 0.00 0.00 40.80 3.21
2190 2547 4.384547 TCATTGTTCGTCTACGTTCATGTG 59.615 41.667 0.00 6.06 40.80 3.21
2191 2548 3.358707 TGTTCGTCTACGTTCATGTGT 57.641 42.857 0.00 0.00 40.80 3.72
2192 2549 3.302555 TGTTCGTCTACGTTCATGTGTC 58.697 45.455 0.00 0.00 40.80 3.67
2193 2550 3.004002 TGTTCGTCTACGTTCATGTGTCT 59.996 43.478 0.00 0.00 40.80 3.41
2194 2551 3.909776 TCGTCTACGTTCATGTGTCTT 57.090 42.857 0.00 0.00 40.80 3.01
2195 2552 4.233123 TCGTCTACGTTCATGTGTCTTT 57.767 40.909 0.00 0.00 40.80 2.52
2196 2553 5.361135 TCGTCTACGTTCATGTGTCTTTA 57.639 39.130 0.00 0.00 40.80 1.85
2197 2554 5.388111 TCGTCTACGTTCATGTGTCTTTAG 58.612 41.667 0.00 0.00 40.80 1.85
2198 2555 5.049198 TCGTCTACGTTCATGTGTCTTTAGT 60.049 40.000 0.00 0.00 40.80 2.24
2199 2556 5.628193 CGTCTACGTTCATGTGTCTTTAGTT 59.372 40.000 0.00 0.00 34.11 2.24
2200 2557 6.143438 CGTCTACGTTCATGTGTCTTTAGTTT 59.857 38.462 0.00 0.00 34.11 2.66
2201 2558 7.324375 CGTCTACGTTCATGTGTCTTTAGTTTA 59.676 37.037 0.00 0.00 34.11 2.01
2202 2559 8.636843 GTCTACGTTCATGTGTCTTTAGTTTAG 58.363 37.037 0.00 0.00 0.00 1.85
2203 2560 8.570488 TCTACGTTCATGTGTCTTTAGTTTAGA 58.430 33.333 0.00 0.00 0.00 2.10
2204 2561 9.355215 CTACGTTCATGTGTCTTTAGTTTAGAT 57.645 33.333 0.00 0.00 0.00 1.98
2205 2562 8.603242 ACGTTCATGTGTCTTTAGTTTAGATT 57.397 30.769 0.00 0.00 0.00 2.40
2206 2563 8.709646 ACGTTCATGTGTCTTTAGTTTAGATTC 58.290 33.333 0.00 0.00 0.00 2.52
2207 2564 8.708742 CGTTCATGTGTCTTTAGTTTAGATTCA 58.291 33.333 0.00 0.00 0.00 2.57
2210 2567 9.383519 TCATGTGTCTTTAGTTTAGATTCATCC 57.616 33.333 0.00 0.00 0.00 3.51
2211 2568 7.827819 TGTGTCTTTAGTTTAGATTCATCCG 57.172 36.000 0.00 0.00 0.00 4.18
2212 2569 7.608153 TGTGTCTTTAGTTTAGATTCATCCGA 58.392 34.615 0.00 0.00 0.00 4.55
2213 2570 7.544566 TGTGTCTTTAGTTTAGATTCATCCGAC 59.455 37.037 0.00 0.00 0.00 4.79
2214 2571 7.010275 GTGTCTTTAGTTTAGATTCATCCGACC 59.990 40.741 0.00 0.00 0.00 4.79
2215 2572 7.093465 TGTCTTTAGTTTAGATTCATCCGACCT 60.093 37.037 0.00 0.00 0.00 3.85
2216 2573 8.411683 GTCTTTAGTTTAGATTCATCCGACCTA 58.588 37.037 0.00 0.00 0.00 3.08
2217 2574 8.411683 TCTTTAGTTTAGATTCATCCGACCTAC 58.588 37.037 0.00 0.00 0.00 3.18
2218 2575 5.184340 AGTTTAGATTCATCCGACCTACG 57.816 43.478 0.00 0.00 42.18 3.51
2219 2576 3.637998 TTAGATTCATCCGACCTACGC 57.362 47.619 0.00 0.00 41.07 4.42
2220 2577 1.693627 AGATTCATCCGACCTACGCT 58.306 50.000 0.00 0.00 41.07 5.07
2221 2578 2.860009 AGATTCATCCGACCTACGCTA 58.140 47.619 0.00 0.00 41.07 4.26
2222 2579 2.553172 AGATTCATCCGACCTACGCTAC 59.447 50.000 0.00 0.00 41.07 3.58
2223 2580 2.048444 TTCATCCGACCTACGCTACT 57.952 50.000 0.00 0.00 41.07 2.57
2224 2581 1.590932 TCATCCGACCTACGCTACTC 58.409 55.000 0.00 0.00 41.07 2.59
2225 2582 1.140452 TCATCCGACCTACGCTACTCT 59.860 52.381 0.00 0.00 41.07 3.24
2226 2583 1.948145 CATCCGACCTACGCTACTCTT 59.052 52.381 0.00 0.00 41.07 2.85
2227 2584 1.661341 TCCGACCTACGCTACTCTTC 58.339 55.000 0.00 0.00 41.07 2.87
2228 2585 1.065926 TCCGACCTACGCTACTCTTCA 60.066 52.381 0.00 0.00 41.07 3.02
2229 2586 1.948145 CCGACCTACGCTACTCTTCAT 59.052 52.381 0.00 0.00 41.07 2.57
2230 2587 2.031857 CCGACCTACGCTACTCTTCATC 60.032 54.545 0.00 0.00 41.07 2.92
2231 2588 2.348685 CGACCTACGCTACTCTTCATCG 60.349 54.545 0.00 0.00 34.51 3.84
2232 2589 2.871022 GACCTACGCTACTCTTCATCGA 59.129 50.000 0.00 0.00 0.00 3.59
2233 2590 2.613133 ACCTACGCTACTCTTCATCGAC 59.387 50.000 0.00 0.00 0.00 4.20
2234 2591 2.348685 CCTACGCTACTCTTCATCGACG 60.349 54.545 0.00 0.00 0.00 5.12
2235 2592 0.377554 ACGCTACTCTTCATCGACGG 59.622 55.000 0.00 0.00 0.00 4.79
2236 2593 0.930742 CGCTACTCTTCATCGACGGC 60.931 60.000 0.00 0.00 0.00 5.68
2237 2594 0.930742 GCTACTCTTCATCGACGGCG 60.931 60.000 2.87 2.87 39.35 6.46
2238 2595 0.317103 CTACTCTTCATCGACGGCGG 60.317 60.000 12.58 0.00 38.28 6.13
2239 2596 1.028330 TACTCTTCATCGACGGCGGT 61.028 55.000 12.58 0.00 38.28 5.68
2240 2597 1.153823 CTCTTCATCGACGGCGGTT 60.154 57.895 12.58 0.00 38.28 4.44
2241 2598 0.099968 CTCTTCATCGACGGCGGTTA 59.900 55.000 12.58 0.00 38.28 2.85
2242 2599 0.179156 TCTTCATCGACGGCGGTTAC 60.179 55.000 12.58 0.00 38.28 2.50
2243 2600 0.179145 CTTCATCGACGGCGGTTACT 60.179 55.000 12.58 0.00 38.28 2.24
2244 2601 0.457166 TTCATCGACGGCGGTTACTG 60.457 55.000 12.58 0.90 38.28 2.74
2245 2602 1.153901 CATCGACGGCGGTTACTGT 60.154 57.895 12.58 0.00 38.28 3.55
2246 2603 0.734942 CATCGACGGCGGTTACTGTT 60.735 55.000 12.58 0.00 38.28 3.16
2247 2604 0.457337 ATCGACGGCGGTTACTGTTC 60.457 55.000 12.58 0.00 38.28 3.18
2248 2605 2.090524 CGACGGCGGTTACTGTTCC 61.091 63.158 13.24 0.00 0.00 3.62
2250 2607 2.812178 CGGCGGTTACTGTTCCGG 60.812 66.667 19.79 0.00 45.85 5.14
2251 2608 2.344872 GGCGGTTACTGTTCCGGT 59.655 61.111 19.79 0.00 45.85 5.28
2252 2609 2.030958 GGCGGTTACTGTTCCGGTG 61.031 63.158 19.79 0.00 45.85 4.94
2253 2610 2.674084 GCGGTTACTGTTCCGGTGC 61.674 63.158 19.79 0.00 45.85 5.01
2254 2611 2.377310 CGGTTACTGTTCCGGTGCG 61.377 63.158 0.00 0.00 42.61 5.34
2255 2612 1.301165 GGTTACTGTTCCGGTGCGT 60.301 57.895 0.00 0.00 0.00 5.24
2256 2613 0.881600 GGTTACTGTTCCGGTGCGTT 60.882 55.000 0.00 0.00 0.00 4.84
2257 2614 0.233848 GTTACTGTTCCGGTGCGTTG 59.766 55.000 0.00 0.00 0.00 4.10
2258 2615 0.881159 TTACTGTTCCGGTGCGTTGG 60.881 55.000 0.00 0.00 0.00 3.77
2259 2616 2.030490 TACTGTTCCGGTGCGTTGGT 62.030 55.000 0.00 0.00 0.00 3.67
2260 2617 2.589442 TGTTCCGGTGCGTTGGTC 60.589 61.111 0.00 0.00 0.00 4.02
2261 2618 3.351416 GTTCCGGTGCGTTGGTCC 61.351 66.667 0.00 0.00 0.00 4.46
2262 2619 4.629523 TTCCGGTGCGTTGGTCCC 62.630 66.667 0.00 0.00 0.00 4.46
2266 2623 4.612412 GGTGCGTTGGTCCCGTGA 62.612 66.667 0.00 0.00 0.00 4.35
2267 2624 3.041940 GTGCGTTGGTCCCGTGAG 61.042 66.667 0.00 0.00 0.00 3.51
2281 2638 2.070861 GTGAGGCTTTAGCACGACG 58.929 57.895 3.88 0.00 44.36 5.12
2282 2639 0.388134 GTGAGGCTTTAGCACGACGA 60.388 55.000 0.00 0.00 44.36 4.20
2283 2640 0.388134 TGAGGCTTTAGCACGACGAC 60.388 55.000 0.00 0.00 44.36 4.34
2284 2641 0.109226 GAGGCTTTAGCACGACGACT 60.109 55.000 0.00 0.59 44.36 4.18
2285 2642 0.317479 AGGCTTTAGCACGACGACTT 59.683 50.000 0.00 0.00 44.36 3.01
2286 2643 1.145803 GGCTTTAGCACGACGACTTT 58.854 50.000 0.00 0.00 44.36 2.66
2287 2644 1.529865 GGCTTTAGCACGACGACTTTT 59.470 47.619 0.00 0.00 44.36 2.27
2288 2645 2.032290 GGCTTTAGCACGACGACTTTTT 60.032 45.455 0.00 0.00 44.36 1.94
2289 2646 2.964768 GCTTTAGCACGACGACTTTTTG 59.035 45.455 0.00 0.00 41.59 2.44
2290 2647 3.545426 GCTTTAGCACGACGACTTTTTGT 60.545 43.478 0.00 0.00 41.59 2.83
2291 2648 3.847037 TTAGCACGACGACTTTTTGTC 57.153 42.857 0.00 0.00 42.06 3.18
2292 2649 1.935933 AGCACGACGACTTTTTGTCT 58.064 45.000 0.00 0.00 43.25 3.41
2293 2650 1.593006 AGCACGACGACTTTTTGTCTG 59.407 47.619 0.00 0.00 43.25 3.51
2294 2651 1.326548 GCACGACGACTTTTTGTCTGT 59.673 47.619 0.00 0.00 43.25 3.41
2295 2652 2.222953 GCACGACGACTTTTTGTCTGTT 60.223 45.455 0.00 0.00 43.25 3.16
2296 2653 3.726782 GCACGACGACTTTTTGTCTGTTT 60.727 43.478 0.00 0.00 43.25 2.83
2297 2654 4.492895 GCACGACGACTTTTTGTCTGTTTA 60.493 41.667 0.00 0.00 43.25 2.01
2298 2655 4.953814 CACGACGACTTTTTGTCTGTTTAC 59.046 41.667 0.00 0.00 43.25 2.01
2299 2656 4.866486 ACGACGACTTTTTGTCTGTTTACT 59.134 37.500 0.00 0.00 43.25 2.24
2300 2657 6.020440 CACGACGACTTTTTGTCTGTTTACTA 60.020 38.462 0.00 0.00 43.25 1.82
2301 2658 6.020360 ACGACGACTTTTTGTCTGTTTACTAC 60.020 38.462 0.00 0.00 43.25 2.73
2302 2659 6.020440 CGACGACTTTTTGTCTGTTTACTACA 60.020 38.462 0.00 0.00 43.25 2.74
2303 2660 7.463119 CGACGACTTTTTGTCTGTTTACTACAA 60.463 37.037 0.00 0.00 43.25 2.41
2304 2661 7.458677 ACGACTTTTTGTCTGTTTACTACAAC 58.541 34.615 0.00 0.00 43.25 3.32
2305 2662 7.118101 ACGACTTTTTGTCTGTTTACTACAACA 59.882 33.333 0.00 0.00 43.25 3.33
2306 2663 7.958567 CGACTTTTTGTCTGTTTACTACAACAA 59.041 33.333 0.00 0.00 43.25 2.83
2307 2664 9.615295 GACTTTTTGTCTGTTTACTACAACAAA 57.385 29.630 0.00 0.00 41.05 2.83
2313 2670 8.401046 TGTCTGTTTACTACAACAAATTTTGC 57.599 30.769 9.04 0.00 36.22 3.68
2314 2671 7.489757 TGTCTGTTTACTACAACAAATTTTGCC 59.510 33.333 9.04 0.00 36.22 4.52
2315 2672 6.981559 TCTGTTTACTACAACAAATTTTGCCC 59.018 34.615 9.04 0.00 36.22 5.36
2316 2673 5.749109 TGTTTACTACAACAAATTTTGCCCG 59.251 36.000 9.04 0.94 33.60 6.13
2317 2674 5.769484 TTACTACAACAAATTTTGCCCGA 57.231 34.783 9.04 0.00 0.00 5.14
2318 2675 3.972403 ACTACAACAAATTTTGCCCGAC 58.028 40.909 9.04 0.00 0.00 4.79
2319 2676 3.634910 ACTACAACAAATTTTGCCCGACT 59.365 39.130 9.04 0.00 0.00 4.18
2320 2677 3.092334 ACAACAAATTTTGCCCGACTC 57.908 42.857 9.04 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 137 3.334583 TCTATCCGTCAGCAAGCTTTT 57.665 42.857 0.00 0.00 0.00 2.27
131 141 3.104843 AGAATCTATCCGTCAGCAAGC 57.895 47.619 0.00 0.00 0.00 4.01
132 142 4.054671 GGAAGAATCTATCCGTCAGCAAG 58.945 47.826 0.00 0.00 0.00 4.01
133 143 3.706594 AGGAAGAATCTATCCGTCAGCAA 59.293 43.478 6.05 0.00 40.78 3.91
134 144 3.300388 AGGAAGAATCTATCCGTCAGCA 58.700 45.455 6.05 0.00 40.78 4.41
193 205 1.308069 CGGAGCATGACAAACCAGGG 61.308 60.000 0.00 0.00 0.00 4.45
211 223 0.038526 ACGACCTAAAGTCCTGTGCG 60.039 55.000 0.00 0.00 43.08 5.34
261 276 1.717032 TGGAGTGTCAAGGTAGCTGT 58.283 50.000 0.00 0.00 0.00 4.40
312 327 5.919141 TCTTCTTCTTCTAGTAACGTGCAAC 59.081 40.000 0.00 0.00 0.00 4.17
341 356 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
342 357 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
343 358 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
344 359 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
345 360 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
346 361 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
347 362 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
348 363 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
349 364 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
350 365 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
351 366 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
352 367 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
353 368 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
354 369 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
355 370 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
356 371 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
357 372 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
358 373 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
359 374 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
360 375 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
361 376 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
362 377 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
363 378 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
364 379 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
365 380 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
366 381 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
367 382 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
368 383 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
369 384 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
370 385 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
371 386 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
372 387 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
373 388 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
374 389 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
375 390 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
376 391 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
377 392 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
378 393 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
379 394 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
380 395 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
381 396 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
382 397 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
383 398 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
384 399 9.898152 TTTCTTCTTCTTCTTCTTCTTCTTCTT 57.102 29.630 0.00 0.00 0.00 2.52
385 400 9.546428 CTTTCTTCTTCTTCTTCTTCTTCTTCT 57.454 33.333 0.00 0.00 0.00 2.85
386 401 9.325198 ACTTTCTTCTTCTTCTTCTTCTTCTTC 57.675 33.333 0.00 0.00 0.00 2.87
387 402 9.325198 GACTTTCTTCTTCTTCTTCTTCTTCTT 57.675 33.333 0.00 0.00 0.00 2.52
388 403 8.704668 AGACTTTCTTCTTCTTCTTCTTCTTCT 58.295 33.333 0.00 0.00 0.00 2.85
389 404 8.887036 AGACTTTCTTCTTCTTCTTCTTCTTC 57.113 34.615 0.00 0.00 0.00 2.87
390 405 8.704668 AGAGACTTTCTTCTTCTTCTTCTTCTT 58.295 33.333 0.00 0.00 29.61 2.52
391 406 8.250143 AGAGACTTTCTTCTTCTTCTTCTTCT 57.750 34.615 0.00 0.00 29.61 2.85
392 407 7.326063 CGAGAGACTTTCTTCTTCTTCTTCTTC 59.674 40.741 0.00 0.00 35.87 2.87
393 408 7.145323 CGAGAGACTTTCTTCTTCTTCTTCTT 58.855 38.462 0.00 0.00 35.87 2.52
394 409 6.264518 ACGAGAGACTTTCTTCTTCTTCTTCT 59.735 38.462 0.00 0.00 35.87 2.85
395 410 6.362283 CACGAGAGACTTTCTTCTTCTTCTTC 59.638 42.308 0.00 0.00 35.87 2.87
396 411 6.039941 TCACGAGAGACTTTCTTCTTCTTCTT 59.960 38.462 0.00 0.00 35.87 2.52
397 412 5.533154 TCACGAGAGACTTTCTTCTTCTTCT 59.467 40.000 0.00 0.00 35.87 2.85
398 413 5.764131 TCACGAGAGACTTTCTTCTTCTTC 58.236 41.667 0.00 0.00 35.87 2.87
399 414 5.776173 TCACGAGAGACTTTCTTCTTCTT 57.224 39.130 0.00 0.00 35.87 2.52
400 415 5.975693 ATCACGAGAGACTTTCTTCTTCT 57.024 39.130 0.00 0.00 35.87 2.85
401 416 8.696410 AATAATCACGAGAGACTTTCTTCTTC 57.304 34.615 0.00 0.00 35.87 2.87
402 417 9.495572 AAAATAATCACGAGAGACTTTCTTCTT 57.504 29.630 0.00 0.00 35.87 2.52
403 418 8.930760 CAAAATAATCACGAGAGACTTTCTTCT 58.069 33.333 0.00 0.00 35.87 2.85
404 419 8.926710 TCAAAATAATCACGAGAGACTTTCTTC 58.073 33.333 0.00 0.00 35.87 2.87
405 420 8.833231 TCAAAATAATCACGAGAGACTTTCTT 57.167 30.769 0.00 0.00 35.87 2.52
406 421 8.307483 TCTCAAAATAATCACGAGAGACTTTCT 58.693 33.333 0.00 0.00 39.43 2.52
407 422 8.467402 TCTCAAAATAATCACGAGAGACTTTC 57.533 34.615 0.00 0.00 0.00 2.62
502 840 2.826128 CTGGAACACACTAGCTGACCTA 59.174 50.000 0.00 0.00 0.00 3.08
504 842 1.344763 ACTGGAACACACTAGCTGACC 59.655 52.381 0.00 0.00 0.00 4.02
551 889 4.159120 GCGCAAGAATCTACTTTTGAACC 58.841 43.478 0.30 0.00 43.02 3.62
577 915 1.627864 GTTGCCCAAGGTTACCATGT 58.372 50.000 3.51 0.00 0.00 3.21
585 923 2.198426 CCACAGGTTGCCCAAGGT 59.802 61.111 0.00 0.00 0.00 3.50
780 1118 5.279256 GCTCTGAAGTCTGAAGTAGAGGTTT 60.279 44.000 0.00 0.00 35.70 3.27
781 1119 4.219725 GCTCTGAAGTCTGAAGTAGAGGTT 59.780 45.833 0.00 0.00 35.70 3.50
783 1121 4.016444 AGCTCTGAAGTCTGAAGTAGAGG 58.984 47.826 0.00 0.00 35.70 3.69
949 1291 7.492669 GCACAGTAGTTCTTCACATACATACAT 59.507 37.037 0.00 0.00 0.00 2.29
950 1292 6.811665 GCACAGTAGTTCTTCACATACATACA 59.188 38.462 0.00 0.00 0.00 2.29
951 1293 7.036220 AGCACAGTAGTTCTTCACATACATAC 58.964 38.462 0.00 0.00 0.00 2.39
952 1294 7.170393 AGCACAGTAGTTCTTCACATACATA 57.830 36.000 0.00 0.00 0.00 2.29
959 1301 5.479306 TCCATAAGCACAGTAGTTCTTCAC 58.521 41.667 0.00 0.00 33.30 3.18
976 1318 9.656040 CATGAAATCAACTTTCCATTTCCATAA 57.344 29.630 0.00 0.00 42.23 1.90
1124 1466 5.428253 ACTGCAGAAAGTGAGACTGTTTTA 58.572 37.500 23.35 0.00 34.60 1.52
1127 1469 3.550437 ACTGCAGAAAGTGAGACTGTT 57.450 42.857 23.35 0.00 34.60 3.16
1258 1610 1.376037 CCTTCACCACTTCCTCCGC 60.376 63.158 0.00 0.00 0.00 5.54
1341 1693 2.356553 TGTTACCGTGTGGCTCGC 60.357 61.111 0.00 0.00 39.70 5.03
1359 1711 3.560068 CCGCACTCCCAGTAACAATAATC 59.440 47.826 0.00 0.00 0.00 1.75
1386 1738 0.818296 AGCTAACTACGTGGGCTCTG 59.182 55.000 3.26 0.00 0.00 3.35
1454 1806 6.515272 AAATTACCCAATCTGCAGTACAAG 57.485 37.500 14.67 4.00 0.00 3.16
1468 1820 4.479156 AGAAACTCCCCAAAATTACCCA 57.521 40.909 0.00 0.00 0.00 4.51
1477 1829 3.295973 CCAGTTCAAAGAAACTCCCCAA 58.704 45.455 0.00 0.00 37.38 4.12
1481 1833 5.523369 CATCAACCAGTTCAAAGAAACTCC 58.477 41.667 0.00 0.00 37.38 3.85
1500 1852 1.910722 GAGGGAAGAGCCAGCATCA 59.089 57.895 0.00 0.00 38.95 3.07
1505 1857 1.153469 GAAGCGAGGGAAGAGCCAG 60.153 63.158 0.00 0.00 38.95 4.85
1509 1861 1.118838 AGGATGAAGCGAGGGAAGAG 58.881 55.000 0.00 0.00 0.00 2.85
1523 1875 1.301716 CCCCGCGGTCAATAGGATG 60.302 63.158 26.12 3.84 0.00 3.51
1553 1907 3.122948 ACGCAATACAGAGCAGTTAAACG 59.877 43.478 0.00 0.00 0.00 3.60
1557 1911 4.157105 TCAGTACGCAATACAGAGCAGTTA 59.843 41.667 0.00 0.00 36.09 2.24
1562 1916 3.512680 AGTTCAGTACGCAATACAGAGC 58.487 45.455 0.00 0.00 36.09 4.09
1563 1917 4.733850 TGAGTTCAGTACGCAATACAGAG 58.266 43.478 0.00 0.00 36.09 3.35
1618 1974 7.816031 ACATATATTCCCCGTGAAAACGTATAG 59.184 37.037 0.00 0.00 36.33 1.31
1620 1976 6.527423 ACATATATTCCCCGTGAAAACGTAT 58.473 36.000 0.00 0.00 36.33 3.06
1662 2018 3.817647 AGTCTGAAACAAATCCTGACAGC 59.182 43.478 0.00 0.00 0.00 4.40
1694 2050 8.858003 TGAGACATATCTGTTCGTTTAAGATC 57.142 34.615 0.00 0.00 35.14 2.75
1702 2058 3.181482 CCAGCTGAGACATATCTGTTCGT 60.181 47.826 17.39 0.00 35.14 3.85
1785 2141 4.883585 GTGTGATTGCTCAATGGATAAGGA 59.116 41.667 0.00 0.00 31.85 3.36
1797 2153 4.436584 GCAACTGTATCTGTGTGATTGCTC 60.437 45.833 0.00 0.00 36.65 4.26
1806 2162 4.625311 TGTTACGATGCAACTGTATCTGTG 59.375 41.667 6.28 0.00 35.41 3.66
1927 2283 7.357613 CGCGTACTAATAGATGTGTTTGATCTG 60.358 40.741 0.00 0.00 32.32 2.90
1933 2289 6.976349 TGAATCGCGTACTAATAGATGTGTTT 59.024 34.615 5.77 0.00 0.00 2.83
1936 2292 6.129168 GGTTGAATCGCGTACTAATAGATGTG 60.129 42.308 5.77 0.00 0.00 3.21
1945 2301 0.526096 GCCGGTTGAATCGCGTACTA 60.526 55.000 5.77 0.00 0.00 1.82
1953 2309 1.963464 TAGACGGGGCCGGTTGAATC 61.963 60.000 18.51 5.01 44.69 2.52
1960 2316 0.466963 AAAACTATAGACGGGGCCGG 59.533 55.000 9.88 9.88 44.69 6.13
1982 2338 8.649973 ACACAAACACTAACAAAACTCAAAAA 57.350 26.923 0.00 0.00 0.00 1.94
1986 2342 6.561737 TGACACAAACACTAACAAAACTCA 57.438 33.333 0.00 0.00 0.00 3.41
1987 2343 7.472543 AGATGACACAAACACTAACAAAACTC 58.527 34.615 0.00 0.00 0.00 3.01
1999 2356 5.827267 TGATTTCCTGAAGATGACACAAACA 59.173 36.000 0.00 0.00 0.00 2.83
2004 2361 5.163913 CGTCTTGATTTCCTGAAGATGACAC 60.164 44.000 0.00 0.00 35.56 3.67
2009 2366 3.274288 GCCGTCTTGATTTCCTGAAGAT 58.726 45.455 0.00 0.00 0.00 2.40
2011 2368 1.394917 CGCCGTCTTGATTTCCTGAAG 59.605 52.381 0.00 0.00 0.00 3.02
2012 2369 1.438651 CGCCGTCTTGATTTCCTGAA 58.561 50.000 0.00 0.00 0.00 3.02
2020 2377 3.701604 GAGTCGCCGCCGTCTTGAT 62.702 63.158 0.00 0.00 33.15 2.57
2027 2384 2.552585 TTTTAGAGGAGTCGCCGCCG 62.553 60.000 0.00 0.00 43.43 6.46
2028 2385 0.390735 TTTTTAGAGGAGTCGCCGCC 60.391 55.000 0.00 0.00 43.43 6.13
2030 2387 2.888594 TCATTTTTAGAGGAGTCGCCG 58.111 47.619 0.00 0.00 43.43 6.46
2032 2389 7.065923 ACCTTATTTCATTTTTAGAGGAGTCGC 59.934 37.037 0.00 0.00 0.00 5.19
2076 2433 1.491670 CTAGACGCACCATCGGAATG 58.508 55.000 0.00 0.00 0.00 2.67
2077 2434 0.249489 GCTAGACGCACCATCGGAAT 60.249 55.000 0.00 0.00 38.92 3.01
2080 2437 2.494445 TGCTAGACGCACCATCGG 59.506 61.111 0.00 0.00 45.47 4.18
2104 2461 1.369692 CACACCTCCACACGCCTAA 59.630 57.895 0.00 0.00 0.00 2.69
2107 2464 2.660258 AAGACACACCTCCACACGCC 62.660 60.000 0.00 0.00 0.00 5.68
2108 2465 1.222115 GAAGACACACCTCCACACGC 61.222 60.000 0.00 0.00 0.00 5.34
2143 2500 1.838112 AGCCGAGCAAATCCATCAAA 58.162 45.000 0.00 0.00 0.00 2.69
2144 2501 2.708216 TAGCCGAGCAAATCCATCAA 57.292 45.000 0.00 0.00 0.00 2.57
2145 2502 2.497138 CATAGCCGAGCAAATCCATCA 58.503 47.619 0.00 0.00 0.00 3.07
2146 2503 1.808945 CCATAGCCGAGCAAATCCATC 59.191 52.381 0.00 0.00 0.00 3.51
2147 2504 1.143684 ACCATAGCCGAGCAAATCCAT 59.856 47.619 0.00 0.00 0.00 3.41
2148 2505 0.546122 ACCATAGCCGAGCAAATCCA 59.454 50.000 0.00 0.00 0.00 3.41
2149 2506 1.230324 GACCATAGCCGAGCAAATCC 58.770 55.000 0.00 0.00 0.00 3.01
2150 2507 1.953559 TGACCATAGCCGAGCAAATC 58.046 50.000 0.00 0.00 0.00 2.17
2151 2508 2.620115 CAATGACCATAGCCGAGCAAAT 59.380 45.455 0.00 0.00 0.00 2.32
2152 2509 2.016318 CAATGACCATAGCCGAGCAAA 58.984 47.619 0.00 0.00 0.00 3.68
2153 2510 1.065491 ACAATGACCATAGCCGAGCAA 60.065 47.619 0.00 0.00 0.00 3.91
2154 2511 0.541392 ACAATGACCATAGCCGAGCA 59.459 50.000 0.00 0.00 0.00 4.26
2155 2512 1.599542 GAACAATGACCATAGCCGAGC 59.400 52.381 0.00 0.00 0.00 5.03
2156 2513 1.860950 CGAACAATGACCATAGCCGAG 59.139 52.381 0.00 0.00 0.00 4.63
2157 2514 1.206132 ACGAACAATGACCATAGCCGA 59.794 47.619 0.00 0.00 0.00 5.54
2158 2515 1.593006 GACGAACAATGACCATAGCCG 59.407 52.381 0.00 0.00 0.00 5.52
2159 2516 2.906354 AGACGAACAATGACCATAGCC 58.094 47.619 0.00 0.00 0.00 3.93
2160 2517 3.486108 CGTAGACGAACAATGACCATAGC 59.514 47.826 0.00 0.00 43.02 2.97
2161 2518 4.669318 ACGTAGACGAACAATGACCATAG 58.331 43.478 9.41 0.00 43.02 2.23
2162 2519 4.707030 ACGTAGACGAACAATGACCATA 57.293 40.909 9.41 0.00 43.02 2.74
2163 2520 3.587797 ACGTAGACGAACAATGACCAT 57.412 42.857 9.41 0.00 43.02 3.55
2164 2521 3.243468 TGAACGTAGACGAACAATGACCA 60.243 43.478 9.41 0.00 43.02 4.02
2165 2522 3.311106 TGAACGTAGACGAACAATGACC 58.689 45.455 9.41 0.00 43.02 4.02
2166 2523 4.384846 ACATGAACGTAGACGAACAATGAC 59.615 41.667 9.41 0.00 43.02 3.06
2167 2524 4.384547 CACATGAACGTAGACGAACAATGA 59.615 41.667 9.41 0.00 43.02 2.57
2168 2525 4.149922 ACACATGAACGTAGACGAACAATG 59.850 41.667 9.41 12.02 43.02 2.82
2169 2526 4.304110 ACACATGAACGTAGACGAACAAT 58.696 39.130 9.41 0.00 43.02 2.71
2170 2527 3.708890 ACACATGAACGTAGACGAACAA 58.291 40.909 9.41 0.00 43.02 2.83
2171 2528 3.004002 AGACACATGAACGTAGACGAACA 59.996 43.478 9.41 8.49 43.02 3.18
2172 2529 3.562505 AGACACATGAACGTAGACGAAC 58.437 45.455 9.41 3.01 43.02 3.95
2173 2530 3.909776 AGACACATGAACGTAGACGAA 57.090 42.857 9.41 0.00 43.02 3.85
2174 2531 3.909776 AAGACACATGAACGTAGACGA 57.090 42.857 9.41 0.00 43.02 4.20
2175 2532 5.152097 ACTAAAGACACATGAACGTAGACG 58.848 41.667 0.00 0.00 46.33 4.18
2176 2533 7.404139 AAACTAAAGACACATGAACGTAGAC 57.596 36.000 0.00 0.00 0.00 2.59
2177 2534 8.570488 TCTAAACTAAAGACACATGAACGTAGA 58.430 33.333 0.00 0.00 0.00 2.59
2178 2535 8.738199 TCTAAACTAAAGACACATGAACGTAG 57.262 34.615 0.00 0.00 0.00 3.51
2179 2536 9.701098 AATCTAAACTAAAGACACATGAACGTA 57.299 29.630 0.00 0.00 0.00 3.57
2180 2537 8.603242 AATCTAAACTAAAGACACATGAACGT 57.397 30.769 0.00 0.00 0.00 3.99
2181 2538 8.708742 TGAATCTAAACTAAAGACACATGAACG 58.291 33.333 0.00 0.00 0.00 3.95
2184 2541 9.383519 GGATGAATCTAAACTAAAGACACATGA 57.616 33.333 0.00 0.00 0.00 3.07
2185 2542 8.331022 CGGATGAATCTAAACTAAAGACACATG 58.669 37.037 0.00 0.00 0.00 3.21
2186 2543 8.258007 TCGGATGAATCTAAACTAAAGACACAT 58.742 33.333 0.00 0.00 0.00 3.21
2187 2544 7.544566 GTCGGATGAATCTAAACTAAAGACACA 59.455 37.037 0.00 0.00 0.00 3.72
2188 2545 7.010275 GGTCGGATGAATCTAAACTAAAGACAC 59.990 40.741 0.00 0.00 0.00 3.67
2189 2546 7.039882 GGTCGGATGAATCTAAACTAAAGACA 58.960 38.462 0.00 0.00 0.00 3.41
2190 2547 7.266400 AGGTCGGATGAATCTAAACTAAAGAC 58.734 38.462 0.00 0.00 0.00 3.01
2191 2548 7.419711 AGGTCGGATGAATCTAAACTAAAGA 57.580 36.000 0.00 0.00 0.00 2.52
2192 2549 7.378995 CGTAGGTCGGATGAATCTAAACTAAAG 59.621 40.741 0.00 0.00 35.71 1.85
2193 2550 7.198390 CGTAGGTCGGATGAATCTAAACTAAA 58.802 38.462 0.00 0.00 35.71 1.85
2194 2551 6.732154 CGTAGGTCGGATGAATCTAAACTAA 58.268 40.000 0.00 0.00 35.71 2.24
2195 2552 5.278169 GCGTAGGTCGGATGAATCTAAACTA 60.278 44.000 0.00 0.00 40.26 2.24
2196 2553 4.499357 GCGTAGGTCGGATGAATCTAAACT 60.499 45.833 0.00 0.00 40.26 2.66
2197 2554 3.734735 GCGTAGGTCGGATGAATCTAAAC 59.265 47.826 0.00 0.00 40.26 2.01
2198 2555 3.635373 AGCGTAGGTCGGATGAATCTAAA 59.365 43.478 0.00 0.00 40.26 1.85
2199 2556 3.220110 AGCGTAGGTCGGATGAATCTAA 58.780 45.455 0.00 0.00 40.26 2.10
2200 2557 2.860009 AGCGTAGGTCGGATGAATCTA 58.140 47.619 0.00 0.00 40.26 1.98
2201 2558 1.693627 AGCGTAGGTCGGATGAATCT 58.306 50.000 0.00 0.00 40.26 2.40
2202 2559 2.553172 AGTAGCGTAGGTCGGATGAATC 59.447 50.000 0.00 0.00 40.68 2.52
2203 2560 2.553172 GAGTAGCGTAGGTCGGATGAAT 59.447 50.000 0.00 0.00 40.68 2.57
2204 2561 1.945394 GAGTAGCGTAGGTCGGATGAA 59.055 52.381 0.00 0.00 40.68 2.57
2205 2562 1.140452 AGAGTAGCGTAGGTCGGATGA 59.860 52.381 0.00 0.00 40.68 2.92
2206 2563 1.595466 AGAGTAGCGTAGGTCGGATG 58.405 55.000 0.00 0.00 40.68 3.51
2207 2564 2.220313 GAAGAGTAGCGTAGGTCGGAT 58.780 52.381 0.00 0.00 40.68 4.18
2208 2565 1.065926 TGAAGAGTAGCGTAGGTCGGA 60.066 52.381 0.00 0.00 40.68 4.55
2209 2566 1.376543 TGAAGAGTAGCGTAGGTCGG 58.623 55.000 0.00 0.00 40.68 4.79
2210 2567 2.348685 CGATGAAGAGTAGCGTAGGTCG 60.349 54.545 0.00 0.00 40.68 4.79
2211 2568 2.871022 TCGATGAAGAGTAGCGTAGGTC 59.129 50.000 0.00 0.00 40.68 3.85
2212 2569 2.613133 GTCGATGAAGAGTAGCGTAGGT 59.387 50.000 0.00 0.00 44.89 3.08
2213 2570 2.348685 CGTCGATGAAGAGTAGCGTAGG 60.349 54.545 0.00 0.00 0.00 3.18
2214 2571 2.348685 CCGTCGATGAAGAGTAGCGTAG 60.349 54.545 6.11 0.00 0.00 3.51
2215 2572 1.596260 CCGTCGATGAAGAGTAGCGTA 59.404 52.381 6.11 0.00 0.00 4.42
2216 2573 0.377554 CCGTCGATGAAGAGTAGCGT 59.622 55.000 6.11 0.00 0.00 5.07
2217 2574 0.930742 GCCGTCGATGAAGAGTAGCG 60.931 60.000 6.11 0.00 0.00 4.26
2218 2575 0.930742 CGCCGTCGATGAAGAGTAGC 60.931 60.000 6.11 0.00 38.10 3.58
2219 2576 0.317103 CCGCCGTCGATGAAGAGTAG 60.317 60.000 6.11 0.00 38.10 2.57
2220 2577 1.028330 ACCGCCGTCGATGAAGAGTA 61.028 55.000 6.11 0.00 38.10 2.59
2221 2578 1.874345 AACCGCCGTCGATGAAGAGT 61.874 55.000 6.11 0.00 38.10 3.24
2222 2579 0.099968 TAACCGCCGTCGATGAAGAG 59.900 55.000 6.11 0.00 38.10 2.85
2223 2580 0.179156 GTAACCGCCGTCGATGAAGA 60.179 55.000 6.11 0.00 38.10 2.87
2224 2581 0.179145 AGTAACCGCCGTCGATGAAG 60.179 55.000 6.11 0.00 38.10 3.02
2225 2582 0.457166 CAGTAACCGCCGTCGATGAA 60.457 55.000 6.11 0.00 38.10 2.57
2226 2583 1.138036 CAGTAACCGCCGTCGATGA 59.862 57.895 6.11 0.00 38.10 2.92
2227 2584 0.734942 AACAGTAACCGCCGTCGATG 60.735 55.000 0.00 0.00 38.10 3.84
2228 2585 0.457337 GAACAGTAACCGCCGTCGAT 60.457 55.000 0.00 0.00 38.10 3.59
2229 2586 1.081242 GAACAGTAACCGCCGTCGA 60.081 57.895 0.00 0.00 38.10 4.20
2230 2587 2.090524 GGAACAGTAACCGCCGTCG 61.091 63.158 0.00 0.00 0.00 5.12
2231 2588 2.090524 CGGAACAGTAACCGCCGTC 61.091 63.158 6.23 0.00 42.55 4.79
2232 2589 2.048877 CGGAACAGTAACCGCCGT 60.049 61.111 6.23 0.00 42.55 5.68
2233 2590 2.812178 CCGGAACAGTAACCGCCG 60.812 66.667 0.00 0.00 46.59 6.46
2234 2591 2.030958 CACCGGAACAGTAACCGCC 61.031 63.158 9.46 0.00 46.59 6.13
2235 2592 2.674084 GCACCGGAACAGTAACCGC 61.674 63.158 9.46 0.00 46.59 5.68
2237 2594 0.881600 AACGCACCGGAACAGTAACC 60.882 55.000 9.46 0.00 0.00 2.85
2238 2595 0.233848 CAACGCACCGGAACAGTAAC 59.766 55.000 9.46 0.00 0.00 2.50
2239 2596 0.881159 CCAACGCACCGGAACAGTAA 60.881 55.000 9.46 0.00 0.00 2.24
2240 2597 1.301087 CCAACGCACCGGAACAGTA 60.301 57.895 9.46 0.00 0.00 2.74
2241 2598 2.590575 CCAACGCACCGGAACAGT 60.591 61.111 9.46 0.00 0.00 3.55
2242 2599 2.590575 ACCAACGCACCGGAACAG 60.591 61.111 9.46 0.00 0.00 3.16
2243 2600 2.589442 GACCAACGCACCGGAACA 60.589 61.111 9.46 0.00 0.00 3.18
2244 2601 3.351416 GGACCAACGCACCGGAAC 61.351 66.667 9.46 0.00 0.00 3.62
2245 2602 4.629523 GGGACCAACGCACCGGAA 62.630 66.667 9.46 0.00 0.00 4.30
2249 2606 4.612412 TCACGGGACCAACGCACC 62.612 66.667 0.00 0.00 34.00 5.01
2250 2607 3.041940 CTCACGGGACCAACGCAC 61.042 66.667 0.00 0.00 34.00 5.34
2251 2608 4.308458 CCTCACGGGACCAACGCA 62.308 66.667 0.00 0.00 37.23 5.24
2253 2610 3.530910 AAGCCTCACGGGACCAACG 62.531 63.158 0.00 0.00 37.23 4.10
2254 2611 0.035739 TAAAGCCTCACGGGACCAAC 59.964 55.000 0.00 0.00 37.23 3.77
2255 2612 0.323629 CTAAAGCCTCACGGGACCAA 59.676 55.000 0.00 0.00 37.23 3.67
2256 2613 1.980052 CTAAAGCCTCACGGGACCA 59.020 57.895 0.00 0.00 37.23 4.02
2257 2614 1.449778 GCTAAAGCCTCACGGGACC 60.450 63.158 0.00 0.00 37.23 4.46
2258 2615 1.019805 GTGCTAAAGCCTCACGGGAC 61.020 60.000 0.00 0.00 41.18 4.46
2259 2616 1.295423 GTGCTAAAGCCTCACGGGA 59.705 57.895 0.00 0.00 41.18 5.14
2260 2617 2.100631 CGTGCTAAAGCCTCACGGG 61.101 63.158 6.15 0.00 46.68 5.28
2261 2618 3.474806 CGTGCTAAAGCCTCACGG 58.525 61.111 6.15 0.00 46.68 4.94
2263 2620 0.388134 TCGTCGTGCTAAAGCCTCAC 60.388 55.000 0.00 0.00 41.18 3.51
2264 2621 0.388134 GTCGTCGTGCTAAAGCCTCA 60.388 55.000 0.00 0.00 41.18 3.86
2265 2622 0.109226 AGTCGTCGTGCTAAAGCCTC 60.109 55.000 0.00 0.00 41.18 4.70
2266 2623 0.317479 AAGTCGTCGTGCTAAAGCCT 59.683 50.000 0.00 0.00 41.18 4.58
2267 2624 1.145803 AAAGTCGTCGTGCTAAAGCC 58.854 50.000 0.00 0.00 41.18 4.35
2268 2625 2.943843 AAAAGTCGTCGTGCTAAAGC 57.056 45.000 0.00 0.00 42.50 3.51
2269 2626 4.191662 ACAAAAAGTCGTCGTGCTAAAG 57.808 40.909 0.00 0.00 0.00 1.85
2270 2627 4.186241 GACAAAAAGTCGTCGTGCTAAA 57.814 40.909 0.00 0.00 37.53 1.85
2271 2628 3.847037 GACAAAAAGTCGTCGTGCTAA 57.153 42.857 0.00 0.00 37.53 3.09
2287 2644 8.865001 GCAAAATTTGTTGTAGTAAACAGACAA 58.135 29.630 7.60 0.00 40.93 3.18
2288 2645 7.489757 GGCAAAATTTGTTGTAGTAAACAGACA 59.510 33.333 7.60 0.00 40.93 3.41
2289 2646 7.042992 GGGCAAAATTTGTTGTAGTAAACAGAC 60.043 37.037 7.60 0.00 40.93 3.51
2290 2647 6.981559 GGGCAAAATTTGTTGTAGTAAACAGA 59.018 34.615 7.60 0.00 40.93 3.41
2291 2648 6.074569 CGGGCAAAATTTGTTGTAGTAAACAG 60.075 38.462 7.60 0.00 40.93 3.16
2292 2649 5.749109 CGGGCAAAATTTGTTGTAGTAAACA 59.251 36.000 7.60 0.00 38.26 2.83
2293 2650 5.978322 TCGGGCAAAATTTGTTGTAGTAAAC 59.022 36.000 7.60 0.00 0.00 2.01
2294 2651 5.978322 GTCGGGCAAAATTTGTTGTAGTAAA 59.022 36.000 7.60 0.00 0.00 2.01
2295 2652 5.299782 AGTCGGGCAAAATTTGTTGTAGTAA 59.700 36.000 7.60 0.00 0.00 2.24
2296 2653 4.822896 AGTCGGGCAAAATTTGTTGTAGTA 59.177 37.500 7.60 0.00 0.00 1.82
2297 2654 3.634910 AGTCGGGCAAAATTTGTTGTAGT 59.365 39.130 7.60 0.00 0.00 2.73
2298 2655 4.226761 GAGTCGGGCAAAATTTGTTGTAG 58.773 43.478 7.60 0.00 0.00 2.74
2299 2656 4.231718 GAGTCGGGCAAAATTTGTTGTA 57.768 40.909 7.60 0.00 0.00 2.41
2300 2657 3.092334 GAGTCGGGCAAAATTTGTTGT 57.908 42.857 7.60 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.