Multiple sequence alignment - TraesCS3A01G347300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G347300 chr3A 100.000 3698 0 0 1 3698 596498542 596502239 0.000000e+00 6830.0
1 TraesCS3A01G347300 chr3A 73.538 325 78 8 2122 2442 749184742 749184422 2.330000e-22 117.0
2 TraesCS3A01G347300 chr3A 96.296 54 1 1 4 57 673465289 673465341 1.830000e-13 87.9
3 TraesCS3A01G347300 chr3A 100.000 46 0 0 2 47 408023803 408023758 6.580000e-13 86.1
4 TraesCS3A01G347300 chr3B 92.413 2122 104 17 849 2943 597045739 597047830 0.000000e+00 2974.0
5 TraesCS3A01G347300 chr3B 89.235 706 41 17 2997 3698 597047815 597048489 0.000000e+00 850.0
6 TraesCS3A01G347300 chr3B 90.379 343 17 6 154 493 597045072 597045401 1.580000e-118 436.0
7 TraesCS3A01G347300 chr3D 88.592 2472 182 45 515 2943 454497427 454499841 0.000000e+00 2911.0
8 TraesCS3A01G347300 chr3D 90.924 606 27 3 3097 3698 454500249 454500830 0.000000e+00 789.0
9 TraesCS3A01G347300 chr3D 95.294 340 15 1 154 493 454497034 454497372 4.200000e-149 538.0
10 TraesCS3A01G347300 chr3D 94.118 102 6 0 2998 3099 454499827 454499928 4.940000e-34 156.0
11 TraesCS3A01G347300 chr3D 72.923 325 80 8 2122 2442 613589758 613589438 5.050000e-19 106.0
12 TraesCS3A01G347300 chr6B 100.000 29 0 0 1387 1415 252384 252412 2.000000e-03 54.7
13 TraesCS3A01G347300 chr5A 100.000 29 0 0 1387 1415 439461091 439461063 2.000000e-03 54.7
14 TraesCS3A01G347300 chr5A 100.000 29 0 0 1387 1415 621012104 621012132 2.000000e-03 54.7
15 TraesCS3A01G347300 chr2A 94.444 36 1 1 1380 1415 36236962 36236996 2.000000e-03 54.7
16 TraesCS3A01G347300 chr2A 100.000 28 0 0 1387 1414 514581870 514581843 7.000000e-03 52.8
17 TraesCS3A01G347300 chr7B 100.000 28 0 0 1387 1414 745444510 745444537 7.000000e-03 52.8
18 TraesCS3A01G347300 chr4B 100.000 28 0 0 1387 1414 72891641 72891668 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G347300 chr3A 596498542 596502239 3697 False 6830.0 6830 100.000000 1 3698 1 chr3A.!!$F1 3697
1 TraesCS3A01G347300 chr3B 597045072 597048489 3417 False 1420.0 2974 90.675667 154 3698 3 chr3B.!!$F1 3544
2 TraesCS3A01G347300 chr3D 454497034 454500830 3796 False 1098.5 2911 92.232000 154 3698 4 chr3D.!!$F1 3544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.042188 CGCTCACTGTGTTTCCAACG 60.042 55.0 7.79 0.0 0.00 4.10 F
445 457 0.107703 CCCTCATTCAGTTGCGCCTA 60.108 55.0 4.18 0.0 0.00 3.93 F
566 611 0.169009 GTTCTGCTCCAATTCGTGCC 59.831 55.0 0.00 0.0 0.00 5.01 F
573 618 0.254462 TCCAATTCGTGCCCTGCATA 59.746 50.0 0.00 0.0 41.91 3.14 F
634 689 0.313672 GGCTGTTTGATTTGGTGCGA 59.686 50.0 0.00 0.0 0.00 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 1996 0.392998 GAGGGCTGTACACCATGTGG 60.393 60.000 14.03 0.0 37.94 4.17 R
1974 2059 1.073897 GAGGTGGAGCTGCTTGGTT 59.926 57.895 6.82 0.0 0.00 3.67 R
2252 2337 4.116328 CGAAGGCGTCGCTGAGGA 62.116 66.667 18.11 0.0 44.14 3.71 R
2592 2677 2.123251 ACGGGCGGGATCATCTCT 60.123 61.111 0.00 0.0 0.00 3.10 R
2733 2827 3.104843 AGAATCTATCCGTCAGCAAGC 57.895 47.619 0.00 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.355077 ATGACGGGTGCATTGGAAA 57.645 47.368 0.00 0.00 0.00 3.13
19 20 1.626686 ATGACGGGTGCATTGGAAAA 58.373 45.000 0.00 0.00 0.00 2.29
20 21 1.403814 TGACGGGTGCATTGGAAAAA 58.596 45.000 0.00 0.00 0.00 1.94
21 22 1.967066 TGACGGGTGCATTGGAAAAAT 59.033 42.857 0.00 0.00 0.00 1.82
22 23 2.029470 TGACGGGTGCATTGGAAAAATC 60.029 45.455 0.00 0.00 0.00 2.17
23 24 1.967066 ACGGGTGCATTGGAAAAATCA 59.033 42.857 0.00 0.00 0.00 2.57
24 25 2.029110 ACGGGTGCATTGGAAAAATCAG 60.029 45.455 0.00 0.00 0.00 2.90
25 26 2.029110 CGGGTGCATTGGAAAAATCAGT 60.029 45.455 0.00 0.00 0.00 3.41
26 27 3.588955 GGGTGCATTGGAAAAATCAGTC 58.411 45.455 0.00 0.00 0.00 3.51
27 28 3.244976 GGTGCATTGGAAAAATCAGTCG 58.755 45.455 0.00 0.00 0.00 4.18
28 29 3.244976 GTGCATTGGAAAAATCAGTCGG 58.755 45.455 0.00 0.00 0.00 4.79
29 30 2.890311 TGCATTGGAAAAATCAGTCGGT 59.110 40.909 0.00 0.00 0.00 4.69
30 31 3.320541 TGCATTGGAAAAATCAGTCGGTT 59.679 39.130 0.00 0.00 0.00 4.44
31 32 3.674753 GCATTGGAAAAATCAGTCGGTTG 59.325 43.478 0.00 0.00 0.00 3.77
32 33 4.558496 GCATTGGAAAAATCAGTCGGTTGA 60.558 41.667 0.00 0.00 0.00 3.18
33 34 5.527951 CATTGGAAAAATCAGTCGGTTGAA 58.472 37.500 0.00 0.00 0.00 2.69
34 35 4.829064 TGGAAAAATCAGTCGGTTGAAG 57.171 40.909 0.00 0.00 0.00 3.02
35 36 3.568007 TGGAAAAATCAGTCGGTTGAAGG 59.432 43.478 0.00 0.00 0.00 3.46
36 37 3.057526 GGAAAAATCAGTCGGTTGAAGGG 60.058 47.826 0.00 0.00 0.00 3.95
37 38 3.502123 AAAATCAGTCGGTTGAAGGGA 57.498 42.857 0.00 0.00 0.00 4.20
38 39 3.502123 AAATCAGTCGGTTGAAGGGAA 57.498 42.857 0.00 0.00 0.00 3.97
39 40 3.721087 AATCAGTCGGTTGAAGGGAAT 57.279 42.857 0.00 0.00 0.00 3.01
40 41 2.762535 TCAGTCGGTTGAAGGGAATC 57.237 50.000 0.00 0.00 0.00 2.52
41 42 2.257207 TCAGTCGGTTGAAGGGAATCT 58.743 47.619 0.00 0.00 0.00 2.40
42 43 2.637872 TCAGTCGGTTGAAGGGAATCTT 59.362 45.455 0.00 0.00 38.65 2.40
43 44 3.072476 TCAGTCGGTTGAAGGGAATCTTT 59.928 43.478 0.00 0.00 35.50 2.52
44 45 3.821033 CAGTCGGTTGAAGGGAATCTTTT 59.179 43.478 0.00 0.00 35.50 2.27
45 46 4.072839 AGTCGGTTGAAGGGAATCTTTTC 58.927 43.478 0.00 0.00 35.50 2.29
100 101 9.988815 AGAATAAATAAATAGATCGCTCACTGT 57.011 29.630 0.00 0.00 0.00 3.55
102 103 9.547753 AATAAATAAATAGATCGCTCACTGTGT 57.452 29.630 7.79 0.00 0.00 3.72
103 104 7.849804 AAATAAATAGATCGCTCACTGTGTT 57.150 32.000 7.79 0.00 0.00 3.32
104 105 7.849804 AATAAATAGATCGCTCACTGTGTTT 57.150 32.000 7.79 0.61 0.00 2.83
105 106 5.786401 AAATAGATCGCTCACTGTGTTTC 57.214 39.130 7.79 0.00 0.00 2.78
106 107 2.086054 AGATCGCTCACTGTGTTTCC 57.914 50.000 7.79 0.00 0.00 3.13
107 108 1.344438 AGATCGCTCACTGTGTTTCCA 59.656 47.619 7.79 0.00 0.00 3.53
108 109 2.143122 GATCGCTCACTGTGTTTCCAA 58.857 47.619 7.79 0.00 0.00 3.53
109 110 1.295792 TCGCTCACTGTGTTTCCAAC 58.704 50.000 7.79 0.00 0.00 3.77
110 111 0.042188 CGCTCACTGTGTTTCCAACG 60.042 55.000 7.79 0.00 0.00 4.10
111 112 0.307760 GCTCACTGTGTTTCCAACGG 59.692 55.000 7.79 0.00 0.00 4.44
112 113 1.663695 CTCACTGTGTTTCCAACGGT 58.336 50.000 7.79 0.00 37.64 4.83
113 114 1.597663 CTCACTGTGTTTCCAACGGTC 59.402 52.381 7.79 0.00 34.90 4.79
114 115 0.303493 CACTGTGTTTCCAACGGTCG 59.697 55.000 0.00 0.00 34.90 4.79
115 116 1.278637 CTGTGTTTCCAACGGTCGC 59.721 57.895 0.00 0.00 0.00 5.19
116 117 2.113131 CTGTGTTTCCAACGGTCGCC 62.113 60.000 0.00 0.00 0.00 5.54
129 130 1.670791 GGTCGCCGATTTTTATCCCA 58.329 50.000 0.00 0.00 0.00 4.37
130 131 1.332686 GGTCGCCGATTTTTATCCCAC 59.667 52.381 0.00 0.00 0.00 4.61
131 132 1.332686 GTCGCCGATTTTTATCCCACC 59.667 52.381 0.00 0.00 0.00 4.61
132 133 0.666374 CGCCGATTTTTATCCCACCC 59.334 55.000 0.00 0.00 0.00 4.61
133 134 0.666374 GCCGATTTTTATCCCACCCG 59.334 55.000 0.00 0.00 0.00 5.28
134 135 1.747898 GCCGATTTTTATCCCACCCGA 60.748 52.381 0.00 0.00 0.00 5.14
135 136 2.218603 CCGATTTTTATCCCACCCGAG 58.781 52.381 0.00 0.00 0.00 4.63
136 137 2.158871 CCGATTTTTATCCCACCCGAGA 60.159 50.000 0.00 0.00 0.00 4.04
137 138 3.537580 CGATTTTTATCCCACCCGAGAA 58.462 45.455 0.00 0.00 0.00 2.87
138 139 3.942748 CGATTTTTATCCCACCCGAGAAA 59.057 43.478 0.00 0.00 0.00 2.52
139 140 4.396790 CGATTTTTATCCCACCCGAGAAAA 59.603 41.667 0.00 0.00 32.62 2.29
140 141 5.647589 GATTTTTATCCCACCCGAGAAAAC 58.352 41.667 0.00 0.00 33.84 2.43
141 142 3.791953 TTTATCCCACCCGAGAAAACA 57.208 42.857 0.00 0.00 0.00 2.83
142 143 4.310022 TTTATCCCACCCGAGAAAACAT 57.690 40.909 0.00 0.00 0.00 2.71
143 144 2.899303 ATCCCACCCGAGAAAACATT 57.101 45.000 0.00 0.00 0.00 2.71
144 145 1.904287 TCCCACCCGAGAAAACATTG 58.096 50.000 0.00 0.00 0.00 2.82
145 146 0.243636 CCCACCCGAGAAAACATTGC 59.756 55.000 0.00 0.00 0.00 3.56
146 147 1.247567 CCACCCGAGAAAACATTGCT 58.752 50.000 0.00 0.00 0.00 3.91
147 148 1.200020 CCACCCGAGAAAACATTGCTC 59.800 52.381 0.00 0.00 0.00 4.26
148 149 1.200020 CACCCGAGAAAACATTGCTCC 59.800 52.381 0.00 0.00 0.00 4.70
149 150 0.447801 CCCGAGAAAACATTGCTCCG 59.552 55.000 0.00 0.00 0.00 4.63
150 151 1.156736 CCGAGAAAACATTGCTCCGT 58.843 50.000 0.00 0.00 0.00 4.69
151 152 1.135972 CCGAGAAAACATTGCTCCGTG 60.136 52.381 0.00 0.00 0.00 4.94
152 153 1.135972 CGAGAAAACATTGCTCCGTGG 60.136 52.381 0.00 0.00 0.00 4.94
189 191 0.535102 CCAAGCTTGACTGGTTCCGT 60.535 55.000 28.05 0.00 0.00 4.69
295 297 0.249120 ACCATTCGCGATCAAGTCCA 59.751 50.000 10.88 0.00 0.00 4.02
398 400 4.319177 CTTTCCCCTACACTCAACAGAAG 58.681 47.826 0.00 0.00 0.00 2.85
441 453 3.909662 CCCCCTCATTCAGTTGCG 58.090 61.111 0.00 0.00 0.00 4.85
442 454 2.409870 CCCCCTCATTCAGTTGCGC 61.410 63.158 0.00 0.00 0.00 6.09
443 455 2.409870 CCCCTCATTCAGTTGCGCC 61.410 63.158 4.18 0.00 0.00 6.53
444 456 1.377725 CCCTCATTCAGTTGCGCCT 60.378 57.895 4.18 0.00 0.00 5.52
445 457 0.107703 CCCTCATTCAGTTGCGCCTA 60.108 55.000 4.18 0.00 0.00 3.93
446 458 1.293924 CCTCATTCAGTTGCGCCTAG 58.706 55.000 4.18 0.00 0.00 3.02
450 462 2.092968 TCATTCAGTTGCGCCTAGGATT 60.093 45.455 14.75 0.00 0.00 3.01
455 467 1.555075 AGTTGCGCCTAGGATTCTTCA 59.445 47.619 14.75 0.00 0.00 3.02
487 499 4.212004 GCGATCTGAATTCGGATGATCAAA 59.788 41.667 30.16 2.64 41.75 2.69
488 500 5.106791 GCGATCTGAATTCGGATGATCAAAT 60.107 40.000 30.16 8.35 41.75 2.32
489 501 6.532311 CGATCTGAATTCGGATGATCAAATC 58.468 40.000 30.16 15.21 41.75 2.17
490 502 5.912360 TCTGAATTCGGATGATCAAATCG 57.088 39.130 13.13 4.42 0.00 3.34
491 503 5.600696 TCTGAATTCGGATGATCAAATCGA 58.399 37.500 13.13 6.90 0.00 3.59
492 504 5.693555 TCTGAATTCGGATGATCAAATCGAG 59.306 40.000 13.13 6.89 0.00 4.04
494 506 6.048509 TGAATTCGGATGATCAAATCGAGAA 58.951 36.000 14.71 11.15 32.36 2.87
495 507 6.201615 TGAATTCGGATGATCAAATCGAGAAG 59.798 38.462 14.71 0.00 31.78 2.85
499 525 5.046529 CGGATGATCAAATCGAGAAGTTCT 58.953 41.667 4.68 4.68 0.00 3.01
513 539 3.262915 AGAAGTTCTTGGGTGATCCTCTG 59.737 47.826 0.00 0.00 36.20 3.35
520 564 2.187958 TGGGTGATCCTCTGTTCGATT 58.812 47.619 0.00 0.00 36.20 3.34
534 578 2.675348 GTTCGATTGGCTTCTCCTCTTG 59.325 50.000 0.00 0.00 35.26 3.02
566 611 0.169009 GTTCTGCTCCAATTCGTGCC 59.831 55.000 0.00 0.00 0.00 5.01
569 614 1.651240 CTGCTCCAATTCGTGCCCTG 61.651 60.000 0.00 0.00 0.00 4.45
570 615 3.056313 GCTCCAATTCGTGCCCTGC 62.056 63.158 0.00 0.00 0.00 4.85
571 616 1.675310 CTCCAATTCGTGCCCTGCA 60.675 57.895 0.00 0.00 35.60 4.41
572 617 1.001020 TCCAATTCGTGCCCTGCAT 60.001 52.632 0.00 0.00 41.91 3.96
573 618 0.254462 TCCAATTCGTGCCCTGCATA 59.746 50.000 0.00 0.00 41.91 3.14
574 619 0.381801 CCAATTCGTGCCCTGCATAC 59.618 55.000 0.00 0.00 41.91 2.39
577 622 0.464373 ATTCGTGCCCTGCATACCTG 60.464 55.000 0.00 0.00 41.91 4.00
594 644 6.038271 GCATACCTGTGTTCTTAGGTTTATGG 59.962 42.308 0.78 0.00 44.72 2.74
600 650 5.949354 TGTGTTCTTAGGTTTATGGATTGGG 59.051 40.000 0.00 0.00 0.00 4.12
604 654 2.052782 AGGTTTATGGATTGGGCGAC 57.947 50.000 0.00 0.00 0.00 5.19
634 689 0.313672 GGCTGTTTGATTTGGTGCGA 59.686 50.000 0.00 0.00 0.00 5.10
649 709 2.863153 CGAGTCCTTTTGCGCCTG 59.137 61.111 4.18 0.00 0.00 4.85
653 713 3.294493 TCCTTTTGCGCCTGTGCC 61.294 61.111 4.18 0.00 0.00 5.01
664 724 1.856265 GCCTGTGCCTTTGAGGTTCG 61.856 60.000 0.00 0.00 37.80 3.95
668 728 0.591659 GTGCCTTTGAGGTTCGGAAC 59.408 55.000 12.41 12.41 37.80 3.62
670 730 1.314730 GCCTTTGAGGTTCGGAACAA 58.685 50.000 21.36 5.77 37.80 2.83
676 736 5.221244 CCTTTGAGGTTCGGAACAAGAAATT 60.221 40.000 21.36 0.00 0.00 1.82
677 737 4.829064 TGAGGTTCGGAACAAGAAATTG 57.171 40.909 21.36 0.00 0.00 2.32
678 738 4.456535 TGAGGTTCGGAACAAGAAATTGA 58.543 39.130 21.36 0.00 0.00 2.57
689 749 7.255035 CGGAACAAGAAATTGATCTGCTATGAT 60.255 37.037 0.00 0.00 0.00 2.45
712 772 5.841957 AAGGAAATCTCATACATGTTGGC 57.158 39.130 2.30 0.00 0.00 4.52
720 780 3.615155 TCATACATGTTGGCGATTTCCA 58.385 40.909 2.30 0.00 0.00 3.53
754 815 6.621596 GCACAACTGAATATGTGTTCTCTTCC 60.622 42.308 7.62 0.00 46.68 3.46
767 828 8.873215 TGTGTTCTCTTCCGATTAATAAGATC 57.127 34.615 0.69 0.00 0.00 2.75
804 865 9.178758 GAAATTTCCCACTTCTAGAACATATGT 57.821 33.333 6.95 1.41 0.00 2.29
836 897 2.329267 AGAATCTGTGGTGGTCAGTGA 58.671 47.619 0.00 0.00 34.86 3.41
837 898 2.301296 AGAATCTGTGGTGGTCAGTGAG 59.699 50.000 0.00 0.00 34.86 3.51
839 900 1.048160 TCTGTGGTGGTCAGTGAGCA 61.048 55.000 20.75 20.75 37.74 4.26
864 925 6.989169 ACATGCTACCTCTGATTAAGAACATC 59.011 38.462 0.00 0.00 33.37 3.06
866 927 6.577103 TGCTACCTCTGATTAAGAACATCTG 58.423 40.000 0.00 0.00 33.37 2.90
924 995 9.206870 GATTTGGAGAATTTGCTACATTGAAAA 57.793 29.630 0.00 0.00 0.00 2.29
925 996 9.729281 ATTTGGAGAATTTGCTACATTGAAAAT 57.271 25.926 0.00 0.00 0.00 1.82
939 1010 9.994432 CTACATTGAAAATCTCACTGGATTTAC 57.006 33.333 3.40 0.00 42.77 2.01
951 1022 8.950210 TCTCACTGGATTTACATCAAAATCTTC 58.050 33.333 8.69 0.00 42.80 2.87
980 1052 3.701040 ACATGCATATTTCAGGTTCCACC 59.299 43.478 0.00 0.00 38.99 4.61
987 1059 4.927267 ATTTCAGGTTCCACCAGTATGA 57.073 40.909 0.00 0.00 41.95 2.15
1021 1093 2.274542 TGCCAGAAATCCAGGGTTCTA 58.725 47.619 6.11 0.00 32.79 2.10
1071 1143 4.837567 CAGAAAGATTACTGCAATACGCC 58.162 43.478 0.00 0.00 41.33 5.68
1072 1144 4.332543 CAGAAAGATTACTGCAATACGCCA 59.667 41.667 0.00 0.00 41.33 5.69
1093 1172 4.634883 CCAGTCTTCAAGTTCATCATCCTG 59.365 45.833 0.00 0.00 0.00 3.86
1099 1178 5.233083 TCAAGTTCATCATCCTGTGTCTT 57.767 39.130 0.00 0.00 0.00 3.01
1103 1182 2.349590 TCATCATCCTGTGTCTTTGCG 58.650 47.619 0.00 0.00 0.00 4.85
1104 1183 2.079158 CATCATCCTGTGTCTTTGCGT 58.921 47.619 0.00 0.00 0.00 5.24
1107 1186 3.937814 TCATCCTGTGTCTTTGCGTAAT 58.062 40.909 0.00 0.00 0.00 1.89
1111 1190 4.130857 TCCTGTGTCTTTGCGTAATCAAA 58.869 39.130 0.00 0.00 35.01 2.69
1112 1191 4.759693 TCCTGTGTCTTTGCGTAATCAAAT 59.240 37.500 0.00 0.00 35.64 2.32
1114 1193 6.092122 TCCTGTGTCTTTGCGTAATCAAATAG 59.908 38.462 0.00 0.00 35.64 1.73
1115 1194 5.627172 TGTGTCTTTGCGTAATCAAATAGC 58.373 37.500 0.00 0.00 35.64 2.97
1126 1205 7.134815 GCGTAATCAAATAGCACAGATTTCAT 58.865 34.615 0.00 0.00 33.22 2.57
1133 1212 3.818961 AGCACAGATTTCATTCACACG 57.181 42.857 0.00 0.00 0.00 4.49
1134 1213 3.402110 AGCACAGATTTCATTCACACGA 58.598 40.909 0.00 0.00 0.00 4.35
1138 1217 5.458452 GCACAGATTTCATTCACACGAAAAA 59.542 36.000 0.00 0.00 34.95 1.94
1216 1301 5.403466 GCAAATTCACCAATTCTGACTGAAC 59.597 40.000 0.00 0.00 37.52 3.18
1233 1318 2.371510 TGAACATCACATCACAGTCCCA 59.628 45.455 0.00 0.00 0.00 4.37
1479 1564 0.467384 ATCCTCTCAACATCGCCCTG 59.533 55.000 0.00 0.00 0.00 4.45
1575 1660 3.826282 CCTTCCAGGGCCTTGAGA 58.174 61.111 18.01 9.19 0.00 3.27
1614 1699 0.687354 ACAACCAGATCCTCAACGCT 59.313 50.000 0.00 0.00 0.00 5.07
1714 1799 2.990479 CCGCCCAGCTAAGGAAGT 59.010 61.111 6.15 0.00 0.00 3.01
1888 1973 0.457851 CTTCTTCATCCTCGGCGTCT 59.542 55.000 6.85 0.00 0.00 4.18
1949 2034 1.079612 TAGGCAGAGACGACGACGA 60.080 57.895 15.32 0.00 42.66 4.20
1950 2035 1.357258 TAGGCAGAGACGACGACGAC 61.357 60.000 15.32 8.08 42.66 4.34
1951 2036 2.571096 GCAGAGACGACGACGACG 60.571 66.667 17.60 17.60 42.66 5.12
1952 2037 3.008240 GCAGAGACGACGACGACGA 62.008 63.158 25.15 0.00 42.66 4.20
1990 2075 1.527433 GGAAACCAAGCAGCTCCACC 61.527 60.000 0.00 0.00 0.00 4.61
1991 2076 0.538287 GAAACCAAGCAGCTCCACCT 60.538 55.000 0.00 0.00 0.00 4.00
1992 2077 0.538287 AAACCAAGCAGCTCCACCTC 60.538 55.000 0.00 0.00 0.00 3.85
1993 2078 2.045536 CCAAGCAGCTCCACCTCC 60.046 66.667 0.00 0.00 0.00 4.30
1994 2079 2.752358 CAAGCAGCTCCACCTCCA 59.248 61.111 0.00 0.00 0.00 3.86
1995 2080 1.673665 CAAGCAGCTCCACCTCCAC 60.674 63.158 0.00 0.00 0.00 4.02
1996 2081 3.245668 AAGCAGCTCCACCTCCACG 62.246 63.158 0.00 0.00 0.00 4.94
1998 2083 4.007644 CAGCTCCACCTCCACGCA 62.008 66.667 0.00 0.00 0.00 5.24
2170 2255 2.406616 GGGCTGGGCAACATGTACG 61.407 63.158 0.00 0.00 39.74 3.67
2592 2677 3.822192 CATCTCGCGGTGGACGGA 61.822 66.667 6.13 0.00 44.51 4.69
2716 2809 3.894257 CCGCGATGGTGACTGATAT 57.106 52.632 8.23 0.00 0.00 1.63
2729 2823 8.189119 TGGTGACTGATATTGTATAGTATGCA 57.811 34.615 0.00 0.00 0.00 3.96
2735 2829 9.784531 ACTGATATTGTATAGTATGCAAAAGCT 57.215 29.630 16.24 4.33 38.34 3.74
2759 2853 4.202161 TGCTGACGGATAGATTCTTCCTTC 60.202 45.833 11.25 11.25 32.42 3.46
2795 2891 5.348451 GTCACCATTTTGACATTGTTATGCC 59.652 40.000 0.00 0.00 44.62 4.40
2813 2909 0.967380 CCCCTGGTTTGTCATGCTCC 60.967 60.000 0.00 0.00 0.00 4.70
2914 3013 6.680338 GTCATCTTTCATCGATTCTTTTCGTG 59.320 38.462 0.00 0.00 40.03 4.35
2934 3033 5.251999 GTGTTGCACGTTACTAGAAGAAG 57.748 43.478 0.00 0.00 0.00 2.85
2935 3034 4.980434 GTGTTGCACGTTACTAGAAGAAGA 59.020 41.667 0.00 0.00 0.00 2.87
2936 3035 5.461078 GTGTTGCACGTTACTAGAAGAAGAA 59.539 40.000 0.00 0.00 0.00 2.52
2937 3036 5.690409 TGTTGCACGTTACTAGAAGAAGAAG 59.310 40.000 0.00 0.00 0.00 2.85
2938 3037 5.700722 TGCACGTTACTAGAAGAAGAAGA 57.299 39.130 0.00 0.00 0.00 2.87
2939 3038 6.080648 TGCACGTTACTAGAAGAAGAAGAA 57.919 37.500 0.00 0.00 0.00 2.52
2940 3039 6.150318 TGCACGTTACTAGAAGAAGAAGAAG 58.850 40.000 0.00 0.00 0.00 2.85
2941 3040 6.016527 TGCACGTTACTAGAAGAAGAAGAAGA 60.017 38.462 0.00 0.00 0.00 2.87
2942 3041 6.862090 GCACGTTACTAGAAGAAGAAGAAGAA 59.138 38.462 0.00 0.00 0.00 2.52
2943 3042 7.061326 GCACGTTACTAGAAGAAGAAGAAGAAG 59.939 40.741 0.00 0.00 0.00 2.85
2944 3043 8.291032 CACGTTACTAGAAGAAGAAGAAGAAGA 58.709 37.037 0.00 0.00 0.00 2.87
2945 3044 8.848182 ACGTTACTAGAAGAAGAAGAAGAAGAA 58.152 33.333 0.00 0.00 0.00 2.52
2946 3045 9.337091 CGTTACTAGAAGAAGAAGAAGAAGAAG 57.663 37.037 0.00 0.00 0.00 2.85
2950 3049 9.362151 ACTAGAAGAAGAAGAAGAAGAAGAAGA 57.638 33.333 0.00 0.00 0.00 2.87
2953 3052 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2954 3053 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2955 3054 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2956 3055 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2957 3056 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2958 3057 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2959 3058 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2960 3059 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2961 3060 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2962 3061 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2963 3062 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2964 3063 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2965 3064 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2966 3065 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2967 3066 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2968 3067 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2969 3068 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2970 3069 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2971 3070 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2972 3071 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2973 3072 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2974 3073 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2975 3074 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2976 3075 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2977 3076 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2978 3077 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2979 3078 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2980 3079 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2981 3080 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2982 3081 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2983 3082 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2984 3083 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2985 3084 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2986 3085 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2987 3086 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2988 3087 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2989 3088 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2990 3089 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2991 3090 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2992 3091 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2993 3092 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2994 3093 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2995 3094 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2996 3095 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2997 3096 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
3052 3151 2.809696 GAGAGGCTCCTACTATGACGAC 59.190 54.545 11.71 0.00 0.00 4.34
3104 3526 7.862675 AGCCTCTGGTTAAAGAATAATGTACT 58.137 34.615 0.00 0.00 0.00 2.73
3106 3528 9.262358 GCCTCTGGTTAAAGAATAATGTACTAG 57.738 37.037 0.00 0.00 0.00 2.57
3153 3575 2.611292 CAGAAAGATTTAGCTGGAGCCG 59.389 50.000 0.00 0.00 43.38 5.52
3179 3601 4.687018 TCAAAAGTAGATTCTTGCGCGTTA 59.313 37.500 8.43 0.00 0.00 3.18
3187 3609 2.081725 TCTTGCGCGTTACATGGTAA 57.918 45.000 8.43 0.00 0.00 2.85
3248 3670 1.648302 ATGCTCCAATGCCCTGCCTA 61.648 55.000 0.00 0.00 0.00 3.93
3249 3671 1.152368 GCTCCAATGCCCTGCCTAT 59.848 57.895 0.00 0.00 0.00 2.57
3250 3672 1.177256 GCTCCAATGCCCTGCCTATG 61.177 60.000 0.00 0.00 0.00 2.23
3373 3795 6.568869 GCAGTATATAAGCTCCAGGATACAG 58.431 44.000 0.00 0.00 41.41 2.74
3374 3796 6.378564 GCAGTATATAAGCTCCAGGATACAGA 59.621 42.308 0.00 0.00 41.41 3.41
3578 4006 5.468540 TGTATGTGAAGAACTACTGTGCT 57.531 39.130 0.00 0.00 32.20 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.626686 TTTTCCAATGCACCCGTCAT 58.373 45.000 0.00 0.00 0.00 3.06
1 2 1.403814 TTTTTCCAATGCACCCGTCA 58.596 45.000 0.00 0.00 0.00 4.35
2 3 2.029470 TGATTTTTCCAATGCACCCGTC 60.029 45.455 0.00 0.00 0.00 4.79
3 4 1.967066 TGATTTTTCCAATGCACCCGT 59.033 42.857 0.00 0.00 0.00 5.28
4 5 2.029110 ACTGATTTTTCCAATGCACCCG 60.029 45.455 0.00 0.00 0.00 5.28
5 6 3.588955 GACTGATTTTTCCAATGCACCC 58.411 45.455 0.00 0.00 0.00 4.61
6 7 3.244976 CGACTGATTTTTCCAATGCACC 58.755 45.455 0.00 0.00 0.00 5.01
7 8 3.244976 CCGACTGATTTTTCCAATGCAC 58.755 45.455 0.00 0.00 0.00 4.57
8 9 2.890311 ACCGACTGATTTTTCCAATGCA 59.110 40.909 0.00 0.00 0.00 3.96
9 10 3.575965 ACCGACTGATTTTTCCAATGC 57.424 42.857 0.00 0.00 0.00 3.56
10 11 5.119931 TCAACCGACTGATTTTTCCAATG 57.880 39.130 0.00 0.00 0.00 2.82
11 12 5.278957 CCTTCAACCGACTGATTTTTCCAAT 60.279 40.000 0.00 0.00 0.00 3.16
12 13 4.037446 CCTTCAACCGACTGATTTTTCCAA 59.963 41.667 0.00 0.00 0.00 3.53
13 14 3.568007 CCTTCAACCGACTGATTTTTCCA 59.432 43.478 0.00 0.00 0.00 3.53
14 15 3.057526 CCCTTCAACCGACTGATTTTTCC 60.058 47.826 0.00 0.00 0.00 3.13
15 16 3.818773 TCCCTTCAACCGACTGATTTTTC 59.181 43.478 0.00 0.00 0.00 2.29
16 17 3.827722 TCCCTTCAACCGACTGATTTTT 58.172 40.909 0.00 0.00 0.00 1.94
17 18 3.502123 TCCCTTCAACCGACTGATTTT 57.498 42.857 0.00 0.00 0.00 1.82
18 19 3.502123 TTCCCTTCAACCGACTGATTT 57.498 42.857 0.00 0.00 0.00 2.17
19 20 3.264450 AGATTCCCTTCAACCGACTGATT 59.736 43.478 0.00 0.00 0.00 2.57
20 21 2.840651 AGATTCCCTTCAACCGACTGAT 59.159 45.455 0.00 0.00 0.00 2.90
21 22 2.257207 AGATTCCCTTCAACCGACTGA 58.743 47.619 0.00 0.00 0.00 3.41
22 23 2.770164 AGATTCCCTTCAACCGACTG 57.230 50.000 0.00 0.00 0.00 3.51
23 24 3.790089 AAAGATTCCCTTCAACCGACT 57.210 42.857 0.00 0.00 33.02 4.18
24 25 4.421033 GAAAAGATTCCCTTCAACCGAC 57.579 45.455 0.00 0.00 33.02 4.79
74 75 9.988815 ACAGTGAGCGATCTATTTATTTATTCT 57.011 29.630 0.90 0.00 0.00 2.40
76 77 9.547753 ACACAGTGAGCGATCTATTTATTTATT 57.452 29.630 7.81 0.00 0.00 1.40
77 78 9.547753 AACACAGTGAGCGATCTATTTATTTAT 57.452 29.630 7.81 0.00 0.00 1.40
78 79 8.942338 AACACAGTGAGCGATCTATTTATTTA 57.058 30.769 7.81 0.00 0.00 1.40
79 80 7.849804 AACACAGTGAGCGATCTATTTATTT 57.150 32.000 7.81 0.00 0.00 1.40
80 81 7.011482 GGAAACACAGTGAGCGATCTATTTATT 59.989 37.037 7.81 0.00 0.00 1.40
81 82 6.480320 GGAAACACAGTGAGCGATCTATTTAT 59.520 38.462 7.81 0.00 0.00 1.40
82 83 5.810587 GGAAACACAGTGAGCGATCTATTTA 59.189 40.000 7.81 0.00 0.00 1.40
83 84 4.631813 GGAAACACAGTGAGCGATCTATTT 59.368 41.667 7.81 0.00 0.00 1.40
84 85 4.184629 GGAAACACAGTGAGCGATCTATT 58.815 43.478 7.81 0.00 0.00 1.73
85 86 3.195610 TGGAAACACAGTGAGCGATCTAT 59.804 43.478 7.81 0.00 33.40 1.98
86 87 2.560981 TGGAAACACAGTGAGCGATCTA 59.439 45.455 7.81 0.00 33.40 1.98
87 88 1.344438 TGGAAACACAGTGAGCGATCT 59.656 47.619 7.81 0.00 33.40 2.75
88 89 1.795768 TGGAAACACAGTGAGCGATC 58.204 50.000 7.81 0.00 33.40 3.69
89 90 2.254546 TTGGAAACACAGTGAGCGAT 57.745 45.000 7.81 0.00 42.67 4.58
90 91 3.770625 TTGGAAACACAGTGAGCGA 57.229 47.368 7.81 0.00 42.67 4.93
110 111 1.332686 GTGGGATAAAAATCGGCGACC 59.667 52.381 13.76 6.85 0.00 4.79
111 112 1.332686 GGTGGGATAAAAATCGGCGAC 59.667 52.381 13.76 0.00 0.00 5.19
112 113 1.670791 GGTGGGATAAAAATCGGCGA 58.329 50.000 13.87 13.87 0.00 5.54
113 114 0.666374 GGGTGGGATAAAAATCGGCG 59.334 55.000 0.00 0.00 0.00 6.46
114 115 0.666374 CGGGTGGGATAAAAATCGGC 59.334 55.000 0.00 0.00 0.00 5.54
115 116 2.158871 TCTCGGGTGGGATAAAAATCGG 60.159 50.000 0.00 0.00 0.00 4.18
116 117 3.188159 TCTCGGGTGGGATAAAAATCG 57.812 47.619 0.00 0.00 0.00 3.34
117 118 5.184287 TGTTTTCTCGGGTGGGATAAAAATC 59.816 40.000 0.00 0.00 0.00 2.17
118 119 5.081032 TGTTTTCTCGGGTGGGATAAAAAT 58.919 37.500 0.00 0.00 0.00 1.82
119 120 4.471548 TGTTTTCTCGGGTGGGATAAAAA 58.528 39.130 0.00 0.00 0.00 1.94
120 121 4.101645 TGTTTTCTCGGGTGGGATAAAA 57.898 40.909 0.00 0.00 0.00 1.52
121 122 3.791953 TGTTTTCTCGGGTGGGATAAA 57.208 42.857 0.00 0.00 0.00 1.40
122 123 4.013728 CAATGTTTTCTCGGGTGGGATAA 58.986 43.478 0.00 0.00 0.00 1.75
123 124 3.616219 CAATGTTTTCTCGGGTGGGATA 58.384 45.455 0.00 0.00 0.00 2.59
124 125 2.446435 CAATGTTTTCTCGGGTGGGAT 58.554 47.619 0.00 0.00 0.00 3.85
125 126 1.904287 CAATGTTTTCTCGGGTGGGA 58.096 50.000 0.00 0.00 0.00 4.37
126 127 0.243636 GCAATGTTTTCTCGGGTGGG 59.756 55.000 0.00 0.00 0.00 4.61
127 128 1.200020 GAGCAATGTTTTCTCGGGTGG 59.800 52.381 0.00 0.00 0.00 4.61
128 129 1.200020 GGAGCAATGTTTTCTCGGGTG 59.800 52.381 0.00 0.00 0.00 4.61
129 130 1.534729 GGAGCAATGTTTTCTCGGGT 58.465 50.000 0.00 0.00 0.00 5.28
130 131 0.447801 CGGAGCAATGTTTTCTCGGG 59.552 55.000 0.00 0.00 0.00 5.14
131 132 1.135972 CACGGAGCAATGTTTTCTCGG 60.136 52.381 0.00 0.00 34.59 4.63
132 133 1.135972 CCACGGAGCAATGTTTTCTCG 60.136 52.381 0.00 0.00 0.00 4.04
133 134 1.200020 CCCACGGAGCAATGTTTTCTC 59.800 52.381 0.00 0.00 0.00 2.87
134 135 1.247567 CCCACGGAGCAATGTTTTCT 58.752 50.000 0.00 0.00 0.00 2.52
135 136 0.958822 ACCCACGGAGCAATGTTTTC 59.041 50.000 0.00 0.00 0.00 2.29
136 137 0.958822 GACCCACGGAGCAATGTTTT 59.041 50.000 0.00 0.00 0.00 2.43
137 138 1.234615 CGACCCACGGAGCAATGTTT 61.235 55.000 0.00 0.00 38.46 2.83
138 139 1.671054 CGACCCACGGAGCAATGTT 60.671 57.895 0.00 0.00 38.46 2.71
139 140 2.047274 CGACCCACGGAGCAATGT 60.047 61.111 0.00 0.00 38.46 2.71
141 142 3.543244 CGATACGACCCACGGAGCAAT 62.543 57.143 0.00 0.00 41.77 3.56
142 143 2.274232 CGATACGACCCACGGAGCAA 62.274 60.000 0.00 0.00 41.77 3.91
143 144 2.767445 CGATACGACCCACGGAGCA 61.767 63.158 0.00 0.00 41.77 4.26
149 150 2.244651 GCATGGCGATACGACCCAC 61.245 63.158 0.00 0.00 31.60 4.61
150 151 2.108157 GCATGGCGATACGACCCA 59.892 61.111 0.00 0.00 31.60 4.51
151 152 2.665185 GGCATGGCGATACGACCC 60.665 66.667 2.41 0.00 31.60 4.46
152 153 1.664965 GAGGCATGGCGATACGACC 60.665 63.158 14.30 0.00 31.60 4.79
295 297 0.040204 CCTTGGGAGTTGGGAGCAAT 59.960 55.000 0.00 0.00 0.00 3.56
398 400 2.514824 GGGCCTCCGATGAACTGC 60.515 66.667 0.84 0.00 0.00 4.40
437 449 1.739035 CGTGAAGAATCCTAGGCGCAA 60.739 52.381 10.83 0.00 0.00 4.85
438 450 0.179111 CGTGAAGAATCCTAGGCGCA 60.179 55.000 10.83 0.00 0.00 6.09
439 451 1.491505 GCGTGAAGAATCCTAGGCGC 61.492 60.000 2.96 7.17 36.97 6.53
440 452 0.876342 GGCGTGAAGAATCCTAGGCG 60.876 60.000 2.96 0.00 0.00 5.52
441 453 0.466124 AGGCGTGAAGAATCCTAGGC 59.534 55.000 2.96 0.00 0.00 3.93
442 454 1.808133 GCAGGCGTGAAGAATCCTAGG 60.808 57.143 11.29 0.82 0.00 3.02
443 455 1.137872 AGCAGGCGTGAAGAATCCTAG 59.862 52.381 11.29 0.00 0.00 3.02
444 456 1.134699 CAGCAGGCGTGAAGAATCCTA 60.135 52.381 11.29 0.00 0.00 2.94
445 457 0.392193 CAGCAGGCGTGAAGAATCCT 60.392 55.000 11.29 0.00 0.00 3.24
446 458 1.986575 GCAGCAGGCGTGAAGAATCC 61.987 60.000 11.29 0.00 0.00 3.01
472 484 6.051717 ACTTCTCGATTTGATCATCCGAATT 58.948 36.000 13.15 0.00 0.00 2.17
487 499 3.118592 GGATCACCCAAGAACTTCTCGAT 60.119 47.826 0.00 0.00 34.14 3.59
488 500 2.233922 GGATCACCCAAGAACTTCTCGA 59.766 50.000 0.00 0.00 34.14 4.04
489 501 2.234908 AGGATCACCCAAGAACTTCTCG 59.765 50.000 0.00 0.00 37.41 4.04
490 502 3.517500 AGAGGATCACCCAAGAACTTCTC 59.482 47.826 0.00 0.00 37.82 2.87
491 503 3.262915 CAGAGGATCACCCAAGAACTTCT 59.737 47.826 0.00 0.00 37.82 2.85
492 504 3.008485 ACAGAGGATCACCCAAGAACTTC 59.992 47.826 0.00 0.00 37.82 3.01
494 506 2.625639 ACAGAGGATCACCCAAGAACT 58.374 47.619 0.00 0.00 37.82 3.01
495 507 3.339141 GAACAGAGGATCACCCAAGAAC 58.661 50.000 0.00 0.00 37.82 3.01
499 525 1.639722 TCGAACAGAGGATCACCCAA 58.360 50.000 0.00 0.00 37.82 4.12
513 539 2.675348 CAAGAGGAGAAGCCAATCGAAC 59.325 50.000 0.00 0.00 40.02 3.95
534 578 2.425668 GAGCAGAACTGGAGTACCTCTC 59.574 54.545 3.99 0.00 42.07 3.20
542 586 2.005451 CGAATTGGAGCAGAACTGGAG 58.995 52.381 3.99 0.00 0.00 3.86
543 587 1.347707 ACGAATTGGAGCAGAACTGGA 59.652 47.619 3.99 0.00 0.00 3.86
544 588 1.466167 CACGAATTGGAGCAGAACTGG 59.534 52.381 3.99 0.00 0.00 4.00
566 611 3.055094 ACCTAAGAACACAGGTATGCAGG 60.055 47.826 0.00 0.00 43.48 4.85
569 614 6.038271 CCATAAACCTAAGAACACAGGTATGC 59.962 42.308 0.00 0.00 44.55 3.14
570 615 7.335627 TCCATAAACCTAAGAACACAGGTATG 58.664 38.462 0.00 0.00 44.55 2.39
571 616 7.504926 TCCATAAACCTAAGAACACAGGTAT 57.495 36.000 0.00 0.00 44.55 2.73
572 617 6.938698 TCCATAAACCTAAGAACACAGGTA 57.061 37.500 0.00 0.00 44.55 3.08
574 619 6.095440 CCAATCCATAAACCTAAGAACACAGG 59.905 42.308 0.00 0.00 37.97 4.00
577 622 5.163550 GCCCAATCCATAAACCTAAGAACAC 60.164 44.000 0.00 0.00 0.00 3.32
588 638 2.746279 ATGGTCGCCCAATCCATAAA 57.254 45.000 0.00 0.00 46.04 1.40
604 654 1.883275 TCAAACAGCCGTACCAAATGG 59.117 47.619 0.00 0.00 42.17 3.16
634 689 2.555547 GCACAGGCGCAAAAGGACT 61.556 57.895 10.83 0.00 0.00 3.85
649 709 0.591659 GTTCCGAACCTCAAAGGCAC 59.408 55.000 0.00 0.00 39.63 5.01
653 713 4.893424 TTTCTTGTTCCGAACCTCAAAG 57.107 40.909 8.80 5.89 0.00 2.77
664 724 7.325660 TCATAGCAGATCAATTTCTTGTTCC 57.674 36.000 0.00 0.00 33.40 3.62
668 728 9.281371 TCCTTATCATAGCAGATCAATTTCTTG 57.719 33.333 0.00 0.00 0.00 3.02
670 730 9.857656 TTTCCTTATCATAGCAGATCAATTTCT 57.142 29.630 0.00 0.00 0.00 2.52
676 736 8.198807 TGAGATTTCCTTATCATAGCAGATCA 57.801 34.615 0.00 0.00 0.00 2.92
689 749 5.527214 CGCCAACATGTATGAGATTTCCTTA 59.473 40.000 0.00 0.00 0.00 2.69
692 752 3.876914 TCGCCAACATGTATGAGATTTCC 59.123 43.478 0.00 0.00 0.00 3.13
712 772 4.944962 TGTGCAGAAACTATGGAAATCG 57.055 40.909 0.00 0.00 0.00 3.34
720 780 7.391554 ACACATATTCAGTTGTGCAGAAACTAT 59.608 33.333 13.02 8.05 45.59 2.12
754 815 6.359883 TCGCGTTTCAGAGATCTTATTAATCG 59.640 38.462 5.77 2.53 0.00 3.34
767 828 2.225491 TGGGAAATTTCGCGTTTCAGAG 59.775 45.455 24.88 0.00 42.42 3.35
804 865 6.884295 CCACCACAGATTCTTAATCAACCTAA 59.116 38.462 2.74 0.00 40.42 2.69
806 867 5.222130 ACCACCACAGATTCTTAATCAACCT 60.222 40.000 2.74 0.00 40.42 3.50
824 885 0.250424 CATGTGCTCACTGACCACCA 60.250 55.000 2.62 0.00 0.00 4.17
825 886 1.580845 GCATGTGCTCACTGACCACC 61.581 60.000 2.62 0.00 38.21 4.61
836 897 5.104776 TTCTTAATCAGAGGTAGCATGTGCT 60.105 40.000 12.66 12.66 43.26 4.40
837 898 4.697514 TCTTAATCAGAGGTAGCATGTGC 58.302 43.478 0.00 0.00 42.49 4.57
839 900 6.299805 TGTTCTTAATCAGAGGTAGCATGT 57.700 37.500 0.00 0.00 31.12 3.21
840 901 7.171167 CAGATGTTCTTAATCAGAGGTAGCATG 59.829 40.741 0.00 0.00 31.12 4.06
841 902 7.070447 TCAGATGTTCTTAATCAGAGGTAGCAT 59.930 37.037 0.00 0.00 31.12 3.79
843 904 6.810911 TCAGATGTTCTTAATCAGAGGTAGC 58.189 40.000 0.00 0.00 31.12 3.58
846 907 7.092712 TGGAATCAGATGTTCTTAATCAGAGGT 60.093 37.037 0.00 0.00 31.12 3.85
847 908 7.278135 TGGAATCAGATGTTCTTAATCAGAGG 58.722 38.462 0.00 0.00 31.12 3.69
864 925 6.038356 GCCACAAATATTGTTCTGGAATCAG 58.962 40.000 3.25 0.00 43.23 2.90
866 927 5.127682 AGGCCACAAATATTGTTCTGGAATC 59.872 40.000 5.01 0.00 43.23 2.52
924 995 9.471702 AAGATTTTGATGTAAATCCAGTGAGAT 57.528 29.630 0.00 0.00 42.72 2.75
925 996 8.868522 AAGATTTTGATGTAAATCCAGTGAGA 57.131 30.769 0.00 0.00 42.72 3.27
939 1010 5.977725 GCATGTGAGATGGAAGATTTTGATG 59.022 40.000 0.00 0.00 0.00 3.07
951 1022 4.825634 ACCTGAAATATGCATGTGAGATGG 59.174 41.667 10.16 6.17 0.00 3.51
980 1052 5.873712 GGCATCAAGTAGGATGATCATACTG 59.126 44.000 27.84 13.67 42.38 2.74
987 1059 5.378230 TTTCTGGCATCAAGTAGGATGAT 57.622 39.130 7.30 0.00 46.00 2.45
1067 1139 2.224281 TGATGAACTTGAAGACTGGCGT 60.224 45.455 0.00 0.00 0.00 5.68
1069 1141 3.376546 GGATGATGAACTTGAAGACTGGC 59.623 47.826 0.00 0.00 0.00 4.85
1070 1142 4.634883 CAGGATGATGAACTTGAAGACTGG 59.365 45.833 0.00 0.00 39.69 4.00
1071 1143 5.121925 CACAGGATGATGAACTTGAAGACTG 59.878 44.000 0.00 0.00 39.69 3.51
1072 1144 5.221803 ACACAGGATGATGAACTTGAAGACT 60.222 40.000 0.00 0.00 39.69 3.24
1093 1172 5.508224 GTGCTATTTGATTACGCAAAGACAC 59.492 40.000 0.00 0.00 40.68 3.67
1099 1178 6.435430 AATCTGTGCTATTTGATTACGCAA 57.565 33.333 0.00 0.00 31.77 4.85
1107 1186 7.307694 GTGTGAATGAAATCTGTGCTATTTGA 58.692 34.615 0.00 0.00 0.00 2.69
1111 1190 5.178061 TCGTGTGAATGAAATCTGTGCTAT 58.822 37.500 0.00 0.00 0.00 2.97
1112 1191 4.565022 TCGTGTGAATGAAATCTGTGCTA 58.435 39.130 0.00 0.00 0.00 3.49
1114 1193 3.811722 TCGTGTGAATGAAATCTGTGC 57.188 42.857 0.00 0.00 0.00 4.57
1138 1217 1.609208 GCAACAGTGTGACCCATCTT 58.391 50.000 0.00 0.00 0.00 2.40
1140 1219 1.577328 CGGCAACAGTGTGACCCATC 61.577 60.000 0.00 0.00 0.00 3.51
1216 1301 2.086869 GGTTGGGACTGTGATGTGATG 58.913 52.381 0.00 0.00 0.00 3.07
1233 1318 1.331214 TTAGTCCGTCGTGAAGGGTT 58.669 50.000 1.98 0.00 34.37 4.11
1353 1438 3.625938 GATCGATGGCAGCTGAATTTTC 58.374 45.455 20.43 5.25 0.00 2.29
1479 1564 2.181521 GCAGAGCAGCCAGATGAGC 61.182 63.158 0.00 0.00 0.00 4.26
1575 1660 2.952978 GTCGATCTCTATCCAGTGGTGT 59.047 50.000 9.54 1.92 0.00 4.16
1614 1699 3.729356 GCTCATGAGCGTGAAGAGA 57.271 52.632 30.64 0.00 45.29 3.10
1714 1799 0.521291 GCGCCATTCTTGCAGTACAA 59.479 50.000 0.00 0.00 36.62 2.41
1911 1996 0.392998 GAGGGCTGTACACCATGTGG 60.393 60.000 14.03 0.00 37.94 4.17
1971 2056 1.527433 GGTGGAGCTGCTTGGTTTCC 61.527 60.000 6.82 0.00 0.00 3.13
1974 2059 1.073897 GAGGTGGAGCTGCTTGGTT 59.926 57.895 6.82 0.00 0.00 3.67
2252 2337 4.116328 CGAAGGCGTCGCTGAGGA 62.116 66.667 18.11 0.00 44.14 3.71
2592 2677 2.123251 ACGGGCGGGATCATCTCT 60.123 61.111 0.00 0.00 0.00 3.10
2729 2823 3.334583 TCTATCCGTCAGCAAGCTTTT 57.665 42.857 0.00 0.00 0.00 2.27
2733 2827 3.104843 AGAATCTATCCGTCAGCAAGC 57.895 47.619 0.00 0.00 0.00 4.01
2734 2828 4.054671 GGAAGAATCTATCCGTCAGCAAG 58.945 47.826 0.00 0.00 0.00 4.01
2735 2829 3.706594 AGGAAGAATCTATCCGTCAGCAA 59.293 43.478 6.05 0.00 40.78 3.91
2736 2830 3.300388 AGGAAGAATCTATCCGTCAGCA 58.700 45.455 6.05 0.00 40.78 4.41
2795 2891 1.308069 CGGAGCATGACAAACCAGGG 61.308 60.000 0.00 0.00 0.00 4.45
2813 2909 0.038526 ACGACCTAAAGTCCTGTGCG 60.039 55.000 0.00 0.00 43.08 5.34
2863 2962 1.717032 TGGAGTGTCAAGGTAGCTGT 58.283 50.000 0.00 0.00 0.00 4.40
2914 3013 5.919141 TCTTCTTCTTCTAGTAACGTGCAAC 59.081 40.000 0.00 0.00 0.00 4.17
2929 3028 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2930 3029 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2931 3030 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2932 3031 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2933 3032 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2934 3033 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2935 3034 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2936 3035 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2937 3036 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2938 3037 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2939 3038 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2940 3039 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2941 3040 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2942 3041 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2943 3042 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2944 3043 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2945 3044 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2946 3045 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2947 3046 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2948 3047 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2949 3048 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2950 3049 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2951 3050 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2952 3051 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2953 3052 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2954 3053 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2955 3054 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2956 3055 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2957 3056 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2958 3057 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2959 3058 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2960 3059 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2961 3060 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2962 3061 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2963 3062 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2964 3063 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2965 3064 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2966 3065 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2967 3066 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2968 3067 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2969 3068 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2970 3069 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2971 3070 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2972 3071 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2973 3072 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2974 3073 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2975 3074 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2976 3075 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2977 3076 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2978 3077 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2979 3078 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2980 3079 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2981 3080 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2982 3081 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2983 3082 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2984 3083 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2985 3084 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2986 3085 9.898152 TTTCTTCTTCTTCTTCTTCTTCTTCTT 57.102 29.630 0.00 0.00 0.00 2.52
2987 3086 9.546428 CTTTCTTCTTCTTCTTCTTCTTCTTCT 57.454 33.333 0.00 0.00 0.00 2.85
2988 3087 9.325198 ACTTTCTTCTTCTTCTTCTTCTTCTTC 57.675 33.333 0.00 0.00 0.00 2.87
2989 3088 9.325198 GACTTTCTTCTTCTTCTTCTTCTTCTT 57.675 33.333 0.00 0.00 0.00 2.52
2990 3089 8.704668 AGACTTTCTTCTTCTTCTTCTTCTTCT 58.295 33.333 0.00 0.00 0.00 2.85
2991 3090 8.887036 AGACTTTCTTCTTCTTCTTCTTCTTC 57.113 34.615 0.00 0.00 0.00 2.87
2992 3091 8.704668 AGAGACTTTCTTCTTCTTCTTCTTCTT 58.295 33.333 0.00 0.00 29.61 2.52
2993 3092 8.250143 AGAGACTTTCTTCTTCTTCTTCTTCT 57.750 34.615 0.00 0.00 29.61 2.85
2994 3093 7.326063 CGAGAGACTTTCTTCTTCTTCTTCTTC 59.674 40.741 0.00 0.00 35.87 2.87
2995 3094 7.145323 CGAGAGACTTTCTTCTTCTTCTTCTT 58.855 38.462 0.00 0.00 35.87 2.52
2996 3095 6.264518 ACGAGAGACTTTCTTCTTCTTCTTCT 59.735 38.462 0.00 0.00 35.87 2.85
2997 3096 6.362283 CACGAGAGACTTTCTTCTTCTTCTTC 59.638 42.308 0.00 0.00 35.87 2.87
3104 3526 2.826128 CTGGAACACACTAGCTGACCTA 59.174 50.000 0.00 0.00 0.00 3.08
3106 3528 1.344763 ACTGGAACACACTAGCTGACC 59.655 52.381 0.00 0.00 0.00 4.02
3153 3575 4.159120 GCGCAAGAATCTACTTTTGAACC 58.841 43.478 0.30 0.00 43.02 3.62
3179 3601 1.627864 GTTGCCCAAGGTTACCATGT 58.372 50.000 3.51 0.00 0.00 3.21
3187 3609 2.198426 CCACAGGTTGCCCAAGGT 59.802 61.111 0.00 0.00 0.00 3.50
3373 3795 5.708230 TCTGAAGTAGAGGTTTCAGTCTCTC 59.292 44.000 12.38 0.00 46.50 3.20
3374 3796 5.475564 GTCTGAAGTAGAGGTTTCAGTCTCT 59.524 44.000 12.38 0.00 46.50 3.10
3551 3979 7.492669 GCACAGTAGTTCTTCACATACATACAT 59.507 37.037 0.00 0.00 0.00 2.29
3552 3980 6.811665 GCACAGTAGTTCTTCACATACATACA 59.188 38.462 0.00 0.00 0.00 2.29
3553 3981 7.036220 AGCACAGTAGTTCTTCACATACATAC 58.964 38.462 0.00 0.00 0.00 2.39
3554 3982 7.170393 AGCACAGTAGTTCTTCACATACATA 57.830 36.000 0.00 0.00 0.00 2.29
3555 3983 6.042638 AGCACAGTAGTTCTTCACATACAT 57.957 37.500 0.00 0.00 0.00 2.29
3556 3984 5.468540 AGCACAGTAGTTCTTCACATACA 57.531 39.130 0.00 0.00 0.00 2.29
3557 3985 7.010552 CCATAAGCACAGTAGTTCTTCACATAC 59.989 40.741 0.00 0.00 33.30 2.39
3558 3986 7.041721 CCATAAGCACAGTAGTTCTTCACATA 58.958 38.462 0.00 0.00 33.30 2.29
3559 3987 5.877012 CCATAAGCACAGTAGTTCTTCACAT 59.123 40.000 0.00 0.00 33.30 3.21
3560 3988 5.011635 TCCATAAGCACAGTAGTTCTTCACA 59.988 40.000 0.00 0.00 33.30 3.58
3561 3989 5.479306 TCCATAAGCACAGTAGTTCTTCAC 58.521 41.667 0.00 0.00 33.30 3.18
3578 4006 9.656040 CATGAAATCAACTTTCCATTTCCATAA 57.344 29.630 0.00 0.00 42.23 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.