Multiple sequence alignment - TraesCS3A01G346800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G346800 | chr3A | 100.000 | 6034 | 0 | 0 | 1 | 6034 | 596106784 | 596112817 | 0.000000e+00 | 11143.0 |
1 | TraesCS3A01G346800 | chr3A | 97.597 | 1207 | 25 | 3 | 1939 | 3142 | 80426273 | 80425068 | 0.000000e+00 | 2065.0 |
2 | TraesCS3A01G346800 | chr3A | 92.995 | 571 | 40 | 0 | 5464 | 6034 | 610760170 | 610760740 | 0.000000e+00 | 833.0 |
3 | TraesCS3A01G346800 | chr3A | 87.879 | 561 | 64 | 2 | 5469 | 6025 | 723444911 | 723445471 | 0.000000e+00 | 656.0 |
4 | TraesCS3A01G346800 | chr3A | 92.500 | 240 | 17 | 1 | 125 | 363 | 421725322 | 421725561 | 5.790000e-90 | 342.0 |
5 | TraesCS3A01G346800 | chr3A | 92.105 | 76 | 5 | 1 | 287 | 361 | 421724914 | 421724839 | 8.270000e-19 | 106.0 |
6 | TraesCS3A01G346800 | chr3A | 100.000 | 46 | 0 | 0 | 3239 | 3284 | 596109922 | 596109967 | 1.080000e-12 | 86.1 |
7 | TraesCS3A01G346800 | chr3A | 100.000 | 46 | 0 | 0 | 3139 | 3184 | 596110022 | 596110067 | 1.080000e-12 | 86.1 |
8 | TraesCS3A01G346800 | chr3D | 97.194 | 1568 | 41 | 2 | 3774 | 5341 | 275446132 | 275447696 | 0.000000e+00 | 2649.0 |
9 | TraesCS3A01G346800 | chr3D | 97.252 | 1201 | 30 | 3 | 742 | 1941 | 275444517 | 275445715 | 0.000000e+00 | 2032.0 |
10 | TraesCS3A01G346800 | chr3D | 91.053 | 1073 | 69 | 9 | 3779 | 4851 | 146276517 | 146277562 | 0.000000e+00 | 1424.0 |
11 | TraesCS3A01G346800 | chr3D | 89.479 | 1074 | 69 | 16 | 3779 | 4851 | 12135919 | 12136949 | 0.000000e+00 | 1317.0 |
12 | TraesCS3A01G346800 | chr3D | 96.984 | 431 | 11 | 2 | 3183 | 3612 | 275445704 | 275446133 | 0.000000e+00 | 723.0 |
13 | TraesCS3A01G346800 | chr3D | 90.104 | 384 | 14 | 4 | 363 | 746 | 275434813 | 275435172 | 1.520000e-130 | 477.0 |
14 | TraesCS3A01G346800 | chr3D | 80.527 | 493 | 69 | 18 | 956 | 1423 | 473415338 | 473414848 | 2.680000e-93 | 353.0 |
15 | TraesCS3A01G346800 | chr3D | 100.000 | 29 | 0 | 0 | 530 | 558 | 48654288 | 48654260 | 3.000000e-03 | 54.7 |
16 | TraesCS3A01G346800 | chr2A | 96.347 | 1396 | 38 | 8 | 554 | 1941 | 753270362 | 753271752 | 0.000000e+00 | 2283.0 |
17 | TraesCS3A01G346800 | chr2A | 96.804 | 1314 | 32 | 3 | 3829 | 5142 | 753275510 | 753276813 | 0.000000e+00 | 2185.0 |
18 | TraesCS3A01G346800 | chr2A | 97.937 | 1212 | 23 | 1 | 1933 | 3142 | 578390473 | 578391684 | 0.000000e+00 | 2098.0 |
19 | TraesCS3A01G346800 | chr2A | 98.168 | 1201 | 20 | 1 | 1944 | 3142 | 101854859 | 101856059 | 0.000000e+00 | 2095.0 |
20 | TraesCS3A01G346800 | chr2A | 97.835 | 1201 | 24 | 1 | 1944 | 3142 | 421219279 | 421218079 | 0.000000e+00 | 2073.0 |
21 | TraesCS3A01G346800 | chr2A | 96.279 | 430 | 15 | 1 | 3183 | 3612 | 753271741 | 753272169 | 0.000000e+00 | 704.0 |
22 | TraesCS3A01G346800 | chr2A | 79.533 | 557 | 65 | 26 | 876 | 1405 | 61285164 | 61285698 | 9.620000e-93 | 351.0 |
23 | TraesCS3A01G346800 | chr2A | 92.245 | 245 | 13 | 6 | 125 | 364 | 698837306 | 698837063 | 5.790000e-90 | 342.0 |
24 | TraesCS3A01G346800 | chr2A | 90.654 | 214 | 19 | 1 | 876 | 1089 | 47919758 | 47919546 | 3.560000e-72 | 283.0 |
25 | TraesCS3A01G346800 | chr7A | 97.846 | 1207 | 19 | 4 | 1939 | 3142 | 118150750 | 118151952 | 0.000000e+00 | 2078.0 |
26 | TraesCS3A01G346800 | chr7A | 97.680 | 1207 | 24 | 3 | 1939 | 3142 | 94787488 | 94788693 | 0.000000e+00 | 2071.0 |
27 | TraesCS3A01G346800 | chr7A | 97.595 | 1206 | 27 | 1 | 1939 | 3142 | 176249377 | 176250582 | 0.000000e+00 | 2065.0 |
28 | TraesCS3A01G346800 | chr7A | 87.857 | 140 | 16 | 1 | 4854 | 4993 | 155949414 | 155949276 | 4.840000e-36 | 163.0 |
29 | TraesCS3A01G346800 | chr5A | 97.761 | 1206 | 26 | 1 | 1938 | 3142 | 111614584 | 111615789 | 0.000000e+00 | 2076.0 |
30 | TraesCS3A01G346800 | chr5A | 88.986 | 572 | 38 | 5 | 3779 | 4349 | 299616014 | 299616561 | 0.000000e+00 | 684.0 |
31 | TraesCS3A01G346800 | chr5A | 95.161 | 186 | 8 | 1 | 3598 | 3783 | 290391874 | 290391690 | 5.920000e-75 | 292.0 |
32 | TraesCS3A01G346800 | chr5A | 95.109 | 184 | 8 | 1 | 3598 | 3780 | 349787338 | 349787521 | 7.650000e-74 | 289.0 |
33 | TraesCS3A01G346800 | chr4A | 97.674 | 1204 | 25 | 2 | 1941 | 3142 | 357686102 | 357684900 | 0.000000e+00 | 2065.0 |
34 | TraesCS3A01G346800 | chr1D | 96.768 | 1052 | 32 | 2 | 4092 | 5142 | 269442576 | 269441526 | 0.000000e+00 | 1753.0 |
35 | TraesCS3A01G346800 | chr1D | 96.270 | 858 | 27 | 4 | 1088 | 1941 | 269474945 | 269474089 | 0.000000e+00 | 1402.0 |
36 | TraesCS3A01G346800 | chr1D | 90.587 | 1073 | 67 | 11 | 3779 | 4851 | 46478843 | 46477805 | 0.000000e+00 | 1391.0 |
37 | TraesCS3A01G346800 | chr1D | 94.022 | 736 | 35 | 7 | 363 | 1097 | 269497391 | 269496664 | 0.000000e+00 | 1107.0 |
38 | TraesCS3A01G346800 | chr1D | 96.078 | 306 | 12 | 0 | 3183 | 3488 | 269474100 | 269473795 | 3.250000e-137 | 499.0 |
39 | TraesCS3A01G346800 | chr1D | 95.580 | 181 | 4 | 4 | 3611 | 3789 | 238940216 | 238940394 | 2.750000e-73 | 287.0 |
40 | TraesCS3A01G346800 | chr4D | 91.333 | 1073 | 66 | 9 | 3779 | 4851 | 462820567 | 462821612 | 0.000000e+00 | 1441.0 |
41 | TraesCS3A01G346800 | chr4D | 91.408 | 710 | 39 | 6 | 363 | 1072 | 459416725 | 459417412 | 0.000000e+00 | 953.0 |
42 | TraesCS3A01G346800 | chr4D | 96.552 | 174 | 5 | 1 | 3607 | 3780 | 93338210 | 93338038 | 2.750000e-73 | 287.0 |
43 | TraesCS3A01G346800 | chr4D | 96.364 | 55 | 2 | 0 | 4939 | 4993 | 278407122 | 278407176 | 2.320000e-14 | 91.6 |
44 | TraesCS3A01G346800 | chr4D | 100.000 | 34 | 0 | 0 | 1041 | 1074 | 459417411 | 459417444 | 5.050000e-06 | 63.9 |
45 | TraesCS3A01G346800 | chr2D | 91.053 | 1073 | 65 | 10 | 3779 | 4851 | 36501132 | 36500091 | 0.000000e+00 | 1421.0 |
46 | TraesCS3A01G346800 | chr2D | 80.392 | 510 | 49 | 26 | 876 | 1358 | 60751707 | 60752192 | 2.080000e-89 | 340.0 |
47 | TraesCS3A01G346800 | chr2D | 94.565 | 184 | 9 | 1 | 3598 | 3780 | 515499474 | 515499291 | 3.560000e-72 | 283.0 |
48 | TraesCS3A01G346800 | chr7D | 90.680 | 1073 | 67 | 11 | 3779 | 4851 | 168797243 | 168796204 | 0.000000e+00 | 1397.0 |
49 | TraesCS3A01G346800 | chr7D | 90.483 | 746 | 48 | 3 | 3779 | 4524 | 32507697 | 32508419 | 0.000000e+00 | 963.0 |
50 | TraesCS3A01G346800 | chr7D | 78.550 | 331 | 35 | 14 | 557 | 873 | 598164144 | 598163836 | 1.030000e-42 | 185.0 |
51 | TraesCS3A01G346800 | chr5B | 90.812 | 936 | 81 | 4 | 1010 | 1941 | 457988680 | 457989614 | 0.000000e+00 | 1247.0 |
52 | TraesCS3A01G346800 | chr5B | 93.438 | 320 | 19 | 2 | 3180 | 3499 | 457989601 | 457989918 | 1.970000e-129 | 473.0 |
53 | TraesCS3A01G346800 | chr5B | 86.166 | 253 | 27 | 5 | 121 | 365 | 21586679 | 21586931 | 3.590000e-67 | 267.0 |
54 | TraesCS3A01G346800 | chr7B | 90.409 | 636 | 56 | 3 | 3774 | 4407 | 330981780 | 330981148 | 0.000000e+00 | 832.0 |
55 | TraesCS3A01G346800 | chr7B | 94.565 | 184 | 9 | 1 | 3602 | 3785 | 427701757 | 427701939 | 3.560000e-72 | 283.0 |
56 | TraesCS3A01G346800 | chr7B | 88.542 | 96 | 10 | 1 | 3505 | 3600 | 330981877 | 330981783 | 1.370000e-21 | 115.0 |
57 | TraesCS3A01G346800 | chr3B | 90.813 | 566 | 52 | 0 | 5469 | 6034 | 794384372 | 794384937 | 0.000000e+00 | 758.0 |
58 | TraesCS3A01G346800 | chr3B | 90.726 | 248 | 22 | 1 | 1010 | 1257 | 729953065 | 729953311 | 4.510000e-86 | 329.0 |
59 | TraesCS3A01G346800 | chr3B | 96.000 | 175 | 6 | 1 | 3606 | 3780 | 62970100 | 62969927 | 3.560000e-72 | 283.0 |
60 | TraesCS3A01G346800 | chr3B | 81.022 | 137 | 15 | 7 | 5340 | 5469 | 578228858 | 578228726 | 1.380000e-16 | 99.0 |
61 | TraesCS3A01G346800 | chr6B | 90.432 | 533 | 45 | 5 | 1013 | 1541 | 714702024 | 714701494 | 0.000000e+00 | 697.0 |
62 | TraesCS3A01G346800 | chr6B | 92.089 | 316 | 20 | 3 | 4144 | 4457 | 157477767 | 157477455 | 2.000000e-119 | 440.0 |
63 | TraesCS3A01G346800 | chr6B | 95.041 | 242 | 11 | 1 | 3271 | 3512 | 157480477 | 157480237 | 4.410000e-101 | 379.0 |
64 | TraesCS3A01G346800 | chr6B | 89.691 | 97 | 9 | 1 | 3505 | 3601 | 157478181 | 157478086 | 8.210000e-24 | 122.0 |
65 | TraesCS3A01G346800 | chr2B | 79.008 | 867 | 121 | 31 | 876 | 1704 | 94925414 | 94926257 | 2.480000e-148 | 536.0 |
66 | TraesCS3A01G346800 | chr2B | 85.714 | 490 | 59 | 9 | 4854 | 5341 | 800481149 | 800481629 | 1.940000e-139 | 507.0 |
67 | TraesCS3A01G346800 | chr2B | 80.423 | 567 | 77 | 21 | 876 | 1423 | 69502562 | 69502011 | 9.420000e-108 | 401.0 |
68 | TraesCS3A01G346800 | chr2B | 93.061 | 245 | 15 | 2 | 3268 | 3512 | 601333721 | 601333963 | 2.070000e-94 | 357.0 |
69 | TraesCS3A01G346800 | chr2B | 88.542 | 96 | 10 | 1 | 3505 | 3600 | 601335938 | 601336032 | 1.370000e-21 | 115.0 |
70 | TraesCS3A01G346800 | chr1B | 90.204 | 245 | 23 | 1 | 1013 | 1257 | 608864147 | 608863904 | 9.760000e-83 | 318.0 |
71 | TraesCS3A01G346800 | chr1B | 94.565 | 184 | 9 | 1 | 3598 | 3780 | 346057629 | 346057446 | 3.560000e-72 | 283.0 |
72 | TraesCS3A01G346800 | chr1A | 78.702 | 493 | 78 | 20 | 956 | 1423 | 414218133 | 414218623 | 2.730000e-78 | 303.0 |
73 | TraesCS3A01G346800 | chr6D | 97.590 | 166 | 4 | 0 | 3611 | 3776 | 392897139 | 392896974 | 9.900000e-73 | 285.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3A01G346800 | chr3A | 596106784 | 596112817 | 6033 | False | 3771.733333 | 11143 | 100.000000 | 1 | 6034 | 3 | chr3A.!!$F4 | 6033 |
1 | TraesCS3A01G346800 | chr3A | 80425068 | 80426273 | 1205 | True | 2065.000000 | 2065 | 97.597000 | 1939 | 3142 | 1 | chr3A.!!$R1 | 1203 |
2 | TraesCS3A01G346800 | chr3A | 610760170 | 610760740 | 570 | False | 833.000000 | 833 | 92.995000 | 5464 | 6034 | 1 | chr3A.!!$F2 | 570 |
3 | TraesCS3A01G346800 | chr3A | 723444911 | 723445471 | 560 | False | 656.000000 | 656 | 87.879000 | 5469 | 6025 | 1 | chr3A.!!$F3 | 556 |
4 | TraesCS3A01G346800 | chr3D | 275444517 | 275447696 | 3179 | False | 1801.333333 | 2649 | 97.143333 | 742 | 5341 | 3 | chr3D.!!$F4 | 4599 |
5 | TraesCS3A01G346800 | chr3D | 146276517 | 146277562 | 1045 | False | 1424.000000 | 1424 | 91.053000 | 3779 | 4851 | 1 | chr3D.!!$F2 | 1072 |
6 | TraesCS3A01G346800 | chr3D | 12135919 | 12136949 | 1030 | False | 1317.000000 | 1317 | 89.479000 | 3779 | 4851 | 1 | chr3D.!!$F1 | 1072 |
7 | TraesCS3A01G346800 | chr2A | 578390473 | 578391684 | 1211 | False | 2098.000000 | 2098 | 97.937000 | 1933 | 3142 | 1 | chr2A.!!$F3 | 1209 |
8 | TraesCS3A01G346800 | chr2A | 101854859 | 101856059 | 1200 | False | 2095.000000 | 2095 | 98.168000 | 1944 | 3142 | 1 | chr2A.!!$F2 | 1198 |
9 | TraesCS3A01G346800 | chr2A | 421218079 | 421219279 | 1200 | True | 2073.000000 | 2073 | 97.835000 | 1944 | 3142 | 1 | chr2A.!!$R2 | 1198 |
10 | TraesCS3A01G346800 | chr2A | 753270362 | 753276813 | 6451 | False | 1724.000000 | 2283 | 96.476667 | 554 | 5142 | 3 | chr2A.!!$F4 | 4588 |
11 | TraesCS3A01G346800 | chr2A | 61285164 | 61285698 | 534 | False | 351.000000 | 351 | 79.533000 | 876 | 1405 | 1 | chr2A.!!$F1 | 529 |
12 | TraesCS3A01G346800 | chr7A | 118150750 | 118151952 | 1202 | False | 2078.000000 | 2078 | 97.846000 | 1939 | 3142 | 1 | chr7A.!!$F2 | 1203 |
13 | TraesCS3A01G346800 | chr7A | 94787488 | 94788693 | 1205 | False | 2071.000000 | 2071 | 97.680000 | 1939 | 3142 | 1 | chr7A.!!$F1 | 1203 |
14 | TraesCS3A01G346800 | chr7A | 176249377 | 176250582 | 1205 | False | 2065.000000 | 2065 | 97.595000 | 1939 | 3142 | 1 | chr7A.!!$F3 | 1203 |
15 | TraesCS3A01G346800 | chr5A | 111614584 | 111615789 | 1205 | False | 2076.000000 | 2076 | 97.761000 | 1938 | 3142 | 1 | chr5A.!!$F1 | 1204 |
16 | TraesCS3A01G346800 | chr5A | 299616014 | 299616561 | 547 | False | 684.000000 | 684 | 88.986000 | 3779 | 4349 | 1 | chr5A.!!$F2 | 570 |
17 | TraesCS3A01G346800 | chr4A | 357684900 | 357686102 | 1202 | True | 2065.000000 | 2065 | 97.674000 | 1941 | 3142 | 1 | chr4A.!!$R1 | 1201 |
18 | TraesCS3A01G346800 | chr1D | 269441526 | 269442576 | 1050 | True | 1753.000000 | 1753 | 96.768000 | 4092 | 5142 | 1 | chr1D.!!$R2 | 1050 |
19 | TraesCS3A01G346800 | chr1D | 46477805 | 46478843 | 1038 | True | 1391.000000 | 1391 | 90.587000 | 3779 | 4851 | 1 | chr1D.!!$R1 | 1072 |
20 | TraesCS3A01G346800 | chr1D | 269496664 | 269497391 | 727 | True | 1107.000000 | 1107 | 94.022000 | 363 | 1097 | 1 | chr1D.!!$R3 | 734 |
21 | TraesCS3A01G346800 | chr1D | 269473795 | 269474945 | 1150 | True | 950.500000 | 1402 | 96.174000 | 1088 | 3488 | 2 | chr1D.!!$R4 | 2400 |
22 | TraesCS3A01G346800 | chr4D | 462820567 | 462821612 | 1045 | False | 1441.000000 | 1441 | 91.333000 | 3779 | 4851 | 1 | chr4D.!!$F2 | 1072 |
23 | TraesCS3A01G346800 | chr4D | 459416725 | 459417444 | 719 | False | 508.450000 | 953 | 95.704000 | 363 | 1074 | 2 | chr4D.!!$F3 | 711 |
24 | TraesCS3A01G346800 | chr2D | 36500091 | 36501132 | 1041 | True | 1421.000000 | 1421 | 91.053000 | 3779 | 4851 | 1 | chr2D.!!$R1 | 1072 |
25 | TraesCS3A01G346800 | chr7D | 168796204 | 168797243 | 1039 | True | 1397.000000 | 1397 | 90.680000 | 3779 | 4851 | 1 | chr7D.!!$R1 | 1072 |
26 | TraesCS3A01G346800 | chr7D | 32507697 | 32508419 | 722 | False | 963.000000 | 963 | 90.483000 | 3779 | 4524 | 1 | chr7D.!!$F1 | 745 |
27 | TraesCS3A01G346800 | chr5B | 457988680 | 457989918 | 1238 | False | 860.000000 | 1247 | 92.125000 | 1010 | 3499 | 2 | chr5B.!!$F2 | 2489 |
28 | TraesCS3A01G346800 | chr7B | 330981148 | 330981877 | 729 | True | 473.500000 | 832 | 89.475500 | 3505 | 4407 | 2 | chr7B.!!$R1 | 902 |
29 | TraesCS3A01G346800 | chr3B | 794384372 | 794384937 | 565 | False | 758.000000 | 758 | 90.813000 | 5469 | 6034 | 1 | chr3B.!!$F2 | 565 |
30 | TraesCS3A01G346800 | chr6B | 714701494 | 714702024 | 530 | True | 697.000000 | 697 | 90.432000 | 1013 | 1541 | 1 | chr6B.!!$R1 | 528 |
31 | TraesCS3A01G346800 | chr6B | 157477455 | 157480477 | 3022 | True | 313.666667 | 440 | 92.273667 | 3271 | 4457 | 3 | chr6B.!!$R2 | 1186 |
32 | TraesCS3A01G346800 | chr2B | 94925414 | 94926257 | 843 | False | 536.000000 | 536 | 79.008000 | 876 | 1704 | 1 | chr2B.!!$F1 | 828 |
33 | TraesCS3A01G346800 | chr2B | 69502011 | 69502562 | 551 | True | 401.000000 | 401 | 80.423000 | 876 | 1423 | 1 | chr2B.!!$R1 | 547 |
34 | TraesCS3A01G346800 | chr2B | 601333721 | 601336032 | 2311 | False | 236.000000 | 357 | 90.801500 | 3268 | 3600 | 2 | chr2B.!!$F3 | 332 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
31 | 32 | 0.102663 | TGTCGAAGTACACGCCAACA | 59.897 | 50.000 | 7.44 | 5.02 | 0.00 | 3.33 | F |
170 | 171 | 0.161024 | CGCTCGTTCTTTCCGTGTTC | 59.839 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 | F |
1020 | 1039 | 0.533978 | TGGTGTCGCTAAAGCTGCAA | 60.534 | 50.000 | 1.02 | 0.00 | 39.32 | 4.08 | F |
2166 | 2244 | 1.065854 | CCGCCCTCTCTTGACATTCTT | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 | F |
3022 | 3101 | 0.114954 | AGGCCCACCACATGACATTT | 59.885 | 50.000 | 0.00 | 0.00 | 39.06 | 2.32 | F |
4095 | 9582 | 0.105039 | CGATCTCACCTTGGGCTACC | 59.895 | 60.000 | 0.00 | 0.00 | 37.24 | 3.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1020 | 1039 | 2.042831 | GCTCGAGGCATGGTGCTTT | 61.043 | 57.895 | 15.58 | 0.0 | 44.28 | 3.51 | R |
2166 | 2244 | 2.807895 | GACGGCTAAAGCGTGCGA | 60.808 | 61.111 | 6.19 | 0.0 | 43.26 | 5.10 | R |
2212 | 2290 | 1.102978 | GGTTTGGGCATATTCAGCGT | 58.897 | 50.000 | 0.00 | 0.0 | 0.00 | 5.07 | R |
3210 | 3289 | 1.000955 | CGCCTAAACTCTGTCACTGGT | 59.999 | 52.381 | 0.00 | 0.0 | 0.00 | 4.00 | R |
4796 | 10286 | 2.089201 | CCGAAATAAGGAAAAGGCCGT | 58.911 | 47.619 | 0.00 | 0.0 | 0.00 | 5.68 | R |
5503 | 10993 | 0.098552 | TGCGCAATCACCATTAAGCG | 59.901 | 50.000 | 8.16 | 0.0 | 46.99 | 4.68 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 4.715527 | ATGGAGTAGGTTGTCGAAGTAC | 57.284 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
23 | 24 | 3.489355 | TGGAGTAGGTTGTCGAAGTACA | 58.511 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
24 | 25 | 3.254166 | TGGAGTAGGTTGTCGAAGTACAC | 59.746 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
25 | 26 | 3.486584 | GAGTAGGTTGTCGAAGTACACG | 58.513 | 50.000 | 0.00 | 0.48 | 0.00 | 4.49 |
26 | 27 | 1.981533 | GTAGGTTGTCGAAGTACACGC | 59.018 | 52.381 | 7.44 | 4.53 | 0.00 | 5.34 |
27 | 28 | 0.319297 | AGGTTGTCGAAGTACACGCC | 60.319 | 55.000 | 7.44 | 4.00 | 0.00 | 5.68 |
28 | 29 | 0.598158 | GGTTGTCGAAGTACACGCCA | 60.598 | 55.000 | 7.44 | 0.66 | 0.00 | 5.69 |
29 | 30 | 1.210870 | GTTGTCGAAGTACACGCCAA | 58.789 | 50.000 | 5.21 | 5.21 | 0.00 | 4.52 |
30 | 31 | 1.071041 | GTTGTCGAAGTACACGCCAAC | 60.071 | 52.381 | 17.83 | 17.83 | 40.93 | 3.77 |
31 | 32 | 0.102663 | TGTCGAAGTACACGCCAACA | 59.897 | 50.000 | 7.44 | 5.02 | 0.00 | 3.33 |
32 | 33 | 0.505655 | GTCGAAGTACACGCCAACAC | 59.494 | 55.000 | 7.44 | 0.00 | 0.00 | 3.32 |
33 | 34 | 0.935831 | TCGAAGTACACGCCAACACG | 60.936 | 55.000 | 7.44 | 0.00 | 39.50 | 4.49 |
40 | 41 | 4.050955 | ACGCCAACACGTGCAATA | 57.949 | 50.000 | 17.22 | 0.00 | 46.28 | 1.90 |
41 | 42 | 2.322212 | ACGCCAACACGTGCAATAA | 58.678 | 47.368 | 17.22 | 0.00 | 46.28 | 1.40 |
42 | 43 | 0.237235 | ACGCCAACACGTGCAATAAG | 59.763 | 50.000 | 17.22 | 5.72 | 46.28 | 1.73 |
43 | 44 | 0.454285 | CGCCAACACGTGCAATAAGG | 60.454 | 55.000 | 17.22 | 9.61 | 0.00 | 2.69 |
44 | 45 | 0.878416 | GCCAACACGTGCAATAAGGA | 59.122 | 50.000 | 17.22 | 0.00 | 0.00 | 3.36 |
45 | 46 | 1.401018 | GCCAACACGTGCAATAAGGAC | 60.401 | 52.381 | 17.22 | 2.10 | 34.85 | 3.85 |
46 | 47 | 1.199097 | CCAACACGTGCAATAAGGACC | 59.801 | 52.381 | 17.22 | 0.00 | 34.68 | 4.46 |
47 | 48 | 2.151202 | CAACACGTGCAATAAGGACCT | 58.849 | 47.619 | 17.22 | 0.00 | 34.68 | 3.85 |
48 | 49 | 1.808411 | ACACGTGCAATAAGGACCTG | 58.192 | 50.000 | 17.22 | 0.00 | 34.68 | 4.00 |
49 | 50 | 1.346395 | ACACGTGCAATAAGGACCTGA | 59.654 | 47.619 | 17.22 | 0.00 | 34.68 | 3.86 |
50 | 51 | 1.732259 | CACGTGCAATAAGGACCTGAC | 59.268 | 52.381 | 0.82 | 0.00 | 34.68 | 3.51 |
51 | 52 | 1.623811 | ACGTGCAATAAGGACCTGACT | 59.376 | 47.619 | 0.00 | 0.00 | 34.68 | 3.41 |
52 | 53 | 2.829720 | ACGTGCAATAAGGACCTGACTA | 59.170 | 45.455 | 0.00 | 0.00 | 34.68 | 2.59 |
53 | 54 | 3.119101 | ACGTGCAATAAGGACCTGACTAG | 60.119 | 47.826 | 0.00 | 0.00 | 34.68 | 2.57 |
54 | 55 | 3.119101 | CGTGCAATAAGGACCTGACTAGT | 60.119 | 47.826 | 0.00 | 0.00 | 34.68 | 2.57 |
55 | 56 | 4.434520 | GTGCAATAAGGACCTGACTAGTC | 58.565 | 47.826 | 16.32 | 16.32 | 31.47 | 2.59 |
64 | 65 | 3.851098 | GACCTGACTAGTCCATCACAAC | 58.149 | 50.000 | 20.11 | 0.73 | 0.00 | 3.32 |
65 | 66 | 2.567615 | ACCTGACTAGTCCATCACAACC | 59.432 | 50.000 | 20.11 | 0.00 | 0.00 | 3.77 |
66 | 67 | 2.834549 | CCTGACTAGTCCATCACAACCT | 59.165 | 50.000 | 20.11 | 0.00 | 0.00 | 3.50 |
67 | 68 | 3.368843 | CCTGACTAGTCCATCACAACCTG | 60.369 | 52.174 | 20.11 | 0.00 | 0.00 | 4.00 |
68 | 69 | 2.567169 | TGACTAGTCCATCACAACCTGG | 59.433 | 50.000 | 20.11 | 0.00 | 0.00 | 4.45 |
69 | 70 | 1.279271 | ACTAGTCCATCACAACCTGGC | 59.721 | 52.381 | 0.00 | 0.00 | 32.30 | 4.85 |
70 | 71 | 1.278985 | CTAGTCCATCACAACCTGGCA | 59.721 | 52.381 | 0.00 | 0.00 | 32.30 | 4.92 |
71 | 72 | 0.478072 | AGTCCATCACAACCTGGCAA | 59.522 | 50.000 | 0.00 | 0.00 | 32.30 | 4.52 |
72 | 73 | 0.598065 | GTCCATCACAACCTGGCAAC | 59.402 | 55.000 | 0.00 | 0.00 | 32.30 | 4.17 |
73 | 74 | 0.478072 | TCCATCACAACCTGGCAACT | 59.522 | 50.000 | 0.00 | 0.00 | 32.30 | 3.16 |
74 | 75 | 0.883833 | CCATCACAACCTGGCAACTC | 59.116 | 55.000 | 0.00 | 0.00 | 37.61 | 3.01 |
75 | 76 | 1.546323 | CCATCACAACCTGGCAACTCT | 60.546 | 52.381 | 0.00 | 0.00 | 37.61 | 3.24 |
76 | 77 | 2.290260 | CCATCACAACCTGGCAACTCTA | 60.290 | 50.000 | 0.00 | 0.00 | 37.61 | 2.43 |
77 | 78 | 2.839486 | TCACAACCTGGCAACTCTAG | 57.161 | 50.000 | 0.00 | 0.00 | 37.61 | 2.43 |
79 | 80 | 0.693049 | ACAACCTGGCAACTCTAGGG | 59.307 | 55.000 | 0.00 | 0.00 | 46.81 | 3.53 |
80 | 81 | 0.693049 | CAACCTGGCAACTCTAGGGT | 59.307 | 55.000 | 0.00 | 0.00 | 45.27 | 4.34 |
81 | 82 | 1.906574 | CAACCTGGCAACTCTAGGGTA | 59.093 | 52.381 | 0.00 | 0.00 | 42.07 | 3.69 |
82 | 83 | 1.569653 | ACCTGGCAACTCTAGGGTAC | 58.430 | 55.000 | 0.00 | 0.00 | 46.81 | 3.34 |
83 | 84 | 1.203262 | ACCTGGCAACTCTAGGGTACA | 60.203 | 52.381 | 0.00 | 0.00 | 46.81 | 2.90 |
84 | 85 | 2.119495 | CCTGGCAACTCTAGGGTACAT | 58.881 | 52.381 | 0.00 | 0.00 | 39.57 | 2.29 |
85 | 86 | 2.103263 | CCTGGCAACTCTAGGGTACATC | 59.897 | 54.545 | 0.00 | 0.00 | 39.57 | 3.06 |
86 | 87 | 1.754803 | TGGCAACTCTAGGGTACATCG | 59.245 | 52.381 | 0.00 | 0.00 | 37.61 | 3.84 |
87 | 88 | 1.538419 | GGCAACTCTAGGGTACATCGC | 60.538 | 57.143 | 0.00 | 0.00 | 0.00 | 4.58 |
88 | 89 | 1.136305 | GCAACTCTAGGGTACATCGCA | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 5.10 |
89 | 90 | 2.418197 | GCAACTCTAGGGTACATCGCAA | 60.418 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
90 | 91 | 3.857052 | CAACTCTAGGGTACATCGCAAA | 58.143 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
91 | 92 | 4.250464 | CAACTCTAGGGTACATCGCAAAA | 58.750 | 43.478 | 0.00 | 0.00 | 0.00 | 2.44 |
92 | 93 | 3.858247 | ACTCTAGGGTACATCGCAAAAC | 58.142 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
93 | 94 | 2.858344 | CTCTAGGGTACATCGCAAAACG | 59.142 | 50.000 | 0.00 | 0.00 | 45.62 | 3.60 |
107 | 108 | 4.866682 | GCAAAACGAAACAAAATCCCAA | 57.133 | 36.364 | 0.00 | 0.00 | 0.00 | 4.12 |
108 | 109 | 4.583426 | GCAAAACGAAACAAAATCCCAAC | 58.417 | 39.130 | 0.00 | 0.00 | 0.00 | 3.77 |
109 | 110 | 4.093556 | GCAAAACGAAACAAAATCCCAACA | 59.906 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
110 | 111 | 5.555552 | CAAAACGAAACAAAATCCCAACAC | 58.444 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
111 | 112 | 4.457834 | AACGAAACAAAATCCCAACACA | 57.542 | 36.364 | 0.00 | 0.00 | 0.00 | 3.72 |
112 | 113 | 4.040445 | ACGAAACAAAATCCCAACACAG | 57.960 | 40.909 | 0.00 | 0.00 | 0.00 | 3.66 |
113 | 114 | 2.794350 | CGAAACAAAATCCCAACACAGC | 59.206 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
114 | 115 | 3.490761 | CGAAACAAAATCCCAACACAGCT | 60.491 | 43.478 | 0.00 | 0.00 | 0.00 | 4.24 |
115 | 116 | 4.441792 | GAAACAAAATCCCAACACAGCTT | 58.558 | 39.130 | 0.00 | 0.00 | 0.00 | 3.74 |
116 | 117 | 3.733443 | ACAAAATCCCAACACAGCTTC | 57.267 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
117 | 118 | 3.030291 | ACAAAATCCCAACACAGCTTCA | 58.970 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
118 | 119 | 3.642848 | ACAAAATCCCAACACAGCTTCAT | 59.357 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
119 | 120 | 4.101430 | ACAAAATCCCAACACAGCTTCATT | 59.899 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
120 | 121 | 5.304101 | ACAAAATCCCAACACAGCTTCATTA | 59.696 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
121 | 122 | 5.649782 | AAATCCCAACACAGCTTCATTAG | 57.350 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
122 | 123 | 4.574674 | ATCCCAACACAGCTTCATTAGA | 57.425 | 40.909 | 0.00 | 0.00 | 0.00 | 2.10 |
123 | 124 | 4.365514 | TCCCAACACAGCTTCATTAGAA | 57.634 | 40.909 | 0.00 | 0.00 | 0.00 | 2.10 |
124 | 125 | 4.072131 | TCCCAACACAGCTTCATTAGAAC | 58.928 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
125 | 126 | 3.120199 | CCCAACACAGCTTCATTAGAACG | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
126 | 127 | 3.120199 | CCAACACAGCTTCATTAGAACGG | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 4.44 |
127 | 128 | 2.076863 | ACACAGCTTCATTAGAACGGC | 58.923 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
128 | 129 | 1.061131 | CACAGCTTCATTAGAACGGCG | 59.939 | 52.381 | 4.80 | 4.80 | 32.08 | 6.46 |
129 | 130 | 0.652592 | CAGCTTCATTAGAACGGCGG | 59.347 | 55.000 | 13.24 | 0.00 | 32.08 | 6.13 |
130 | 131 | 1.090052 | AGCTTCATTAGAACGGCGGC | 61.090 | 55.000 | 13.24 | 0.00 | 32.08 | 6.53 |
131 | 132 | 1.636340 | CTTCATTAGAACGGCGGCG | 59.364 | 57.895 | 31.06 | 31.06 | 0.00 | 6.46 |
132 | 133 | 1.762222 | CTTCATTAGAACGGCGGCGG | 61.762 | 60.000 | 35.05 | 17.25 | 0.00 | 6.13 |
133 | 134 | 3.937062 | CATTAGAACGGCGGCGGC | 61.937 | 66.667 | 35.05 | 24.75 | 38.90 | 6.53 |
134 | 135 | 4.157120 | ATTAGAACGGCGGCGGCT | 62.157 | 61.111 | 35.05 | 30.16 | 39.81 | 5.52 |
148 | 149 | 4.021925 | GGCTGGTTGGGAGCGAGT | 62.022 | 66.667 | 0.00 | 0.00 | 37.32 | 4.18 |
149 | 150 | 2.435059 | GCTGGTTGGGAGCGAGTC | 60.435 | 66.667 | 0.00 | 0.00 | 0.00 | 3.36 |
150 | 151 | 3.059982 | CTGGTTGGGAGCGAGTCA | 58.940 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
151 | 152 | 1.374758 | CTGGTTGGGAGCGAGTCAC | 60.375 | 63.158 | 0.00 | 0.00 | 0.00 | 3.67 |
152 | 153 | 2.432628 | GGTTGGGAGCGAGTCACG | 60.433 | 66.667 | 0.00 | 0.00 | 45.66 | 4.35 |
164 | 165 | 1.061485 | GAGTCACGCTCGTTCTTTCC | 58.939 | 55.000 | 0.00 | 0.00 | 34.13 | 3.13 |
165 | 166 | 0.663568 | AGTCACGCTCGTTCTTTCCG | 60.664 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
166 | 167 | 0.938168 | GTCACGCTCGTTCTTTCCGT | 60.938 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
167 | 168 | 1.487231 | CACGCTCGTTCTTTCCGTG | 59.513 | 57.895 | 0.00 | 0.00 | 42.36 | 4.94 |
168 | 169 | 1.066918 | ACGCTCGTTCTTTCCGTGT | 59.933 | 52.632 | 0.00 | 0.00 | 0.00 | 4.49 |
169 | 170 | 0.529119 | ACGCTCGTTCTTTCCGTGTT | 60.529 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
170 | 171 | 0.161024 | CGCTCGTTCTTTCCGTGTTC | 59.839 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
171 | 172 | 1.499049 | GCTCGTTCTTTCCGTGTTCT | 58.501 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
172 | 173 | 1.456165 | GCTCGTTCTTTCCGTGTTCTC | 59.544 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
173 | 174 | 2.739292 | CTCGTTCTTTCCGTGTTCTCA | 58.261 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
174 | 175 | 2.726760 | CTCGTTCTTTCCGTGTTCTCAG | 59.273 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
175 | 176 | 2.100252 | TCGTTCTTTCCGTGTTCTCAGT | 59.900 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
176 | 177 | 2.864343 | CGTTCTTTCCGTGTTCTCAGTT | 59.136 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
177 | 178 | 3.308866 | CGTTCTTTCCGTGTTCTCAGTTT | 59.691 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
178 | 179 | 4.201783 | CGTTCTTTCCGTGTTCTCAGTTTT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
179 | 180 | 5.637809 | GTTCTTTCCGTGTTCTCAGTTTTT | 58.362 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
234 | 235 | 7.658261 | ACAGAGAAAATACAAAGGTTTTAGGC | 58.342 | 34.615 | 0.00 | 0.00 | 0.00 | 3.93 |
235 | 236 | 7.286775 | ACAGAGAAAATACAAAGGTTTTAGGCA | 59.713 | 33.333 | 0.00 | 0.00 | 0.00 | 4.75 |
236 | 237 | 8.141268 | CAGAGAAAATACAAAGGTTTTAGGCAA | 58.859 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
237 | 238 | 8.700973 | AGAGAAAATACAAAGGTTTTAGGCAAA | 58.299 | 29.630 | 0.00 | 0.00 | 0.00 | 3.68 |
238 | 239 | 9.489084 | GAGAAAATACAAAGGTTTTAGGCAAAT | 57.511 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
239 | 240 | 9.845740 | AGAAAATACAAAGGTTTTAGGCAAATT | 57.154 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
240 | 241 | 9.877137 | GAAAATACAAAGGTTTTAGGCAAATTG | 57.123 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
241 | 242 | 8.972458 | AAATACAAAGGTTTTAGGCAAATTGT | 57.028 | 26.923 | 0.00 | 0.00 | 31.47 | 2.71 |
281 | 282 | 5.837586 | TTTTTGTTGTTGTCAAACAGCTC | 57.162 | 34.783 | 6.92 | 0.00 | 46.66 | 4.09 |
282 | 283 | 2.823196 | TGTTGTTGTCAAACAGCTCG | 57.177 | 45.000 | 6.92 | 0.00 | 46.66 | 5.03 |
283 | 284 | 1.202132 | TGTTGTTGTCAAACAGCTCGC | 60.202 | 47.619 | 6.92 | 0.00 | 46.66 | 5.03 |
284 | 285 | 1.064060 | GTTGTTGTCAAACAGCTCGCT | 59.936 | 47.619 | 0.00 | 0.00 | 46.66 | 4.93 |
285 | 286 | 1.063912 | TTGTTGTCAAACAGCTCGCTG | 59.936 | 47.619 | 16.77 | 16.77 | 46.66 | 5.18 |
297 | 298 | 4.678509 | CAGCTCGCTGTAATTAAAACCA | 57.321 | 40.909 | 10.65 | 0.00 | 39.10 | 3.67 |
298 | 299 | 5.235305 | CAGCTCGCTGTAATTAAAACCAT | 57.765 | 39.130 | 10.65 | 0.00 | 39.10 | 3.55 |
299 | 300 | 5.030295 | CAGCTCGCTGTAATTAAAACCATG | 58.970 | 41.667 | 10.65 | 0.00 | 39.10 | 3.66 |
300 | 301 | 4.096382 | AGCTCGCTGTAATTAAAACCATGG | 59.904 | 41.667 | 11.19 | 11.19 | 0.00 | 3.66 |
301 | 302 | 4.142469 | GCTCGCTGTAATTAAAACCATGGT | 60.142 | 41.667 | 13.00 | 13.00 | 0.00 | 3.55 |
302 | 303 | 5.065474 | GCTCGCTGTAATTAAAACCATGGTA | 59.935 | 40.000 | 20.12 | 1.83 | 0.00 | 3.25 |
303 | 304 | 6.238648 | GCTCGCTGTAATTAAAACCATGGTAT | 60.239 | 38.462 | 20.12 | 13.09 | 0.00 | 2.73 |
304 | 305 | 7.633193 | TCGCTGTAATTAAAACCATGGTATT | 57.367 | 32.000 | 20.12 | 16.24 | 0.00 | 1.89 |
305 | 306 | 7.699566 | TCGCTGTAATTAAAACCATGGTATTC | 58.300 | 34.615 | 20.12 | 8.75 | 0.00 | 1.75 |
306 | 307 | 7.554835 | TCGCTGTAATTAAAACCATGGTATTCT | 59.445 | 33.333 | 20.12 | 0.00 | 0.00 | 2.40 |
307 | 308 | 7.855904 | CGCTGTAATTAAAACCATGGTATTCTC | 59.144 | 37.037 | 20.12 | 11.02 | 0.00 | 2.87 |
308 | 309 | 8.682710 | GCTGTAATTAAAACCATGGTATTCTCA | 58.317 | 33.333 | 20.12 | 14.44 | 0.00 | 3.27 |
319 | 320 | 9.975218 | AACCATGGTATTCTCAAAAACTATAGT | 57.025 | 29.630 | 20.12 | 0.00 | 0.00 | 2.12 |
361 | 362 | 5.767816 | AATACTGAATTATCAAACGGGGC | 57.232 | 39.130 | 0.00 | 0.00 | 34.49 | 5.80 |
365 | 366 | 1.681264 | GAATTATCAAACGGGGCCTGG | 59.319 | 52.381 | 18.49 | 5.37 | 0.00 | 4.45 |
381 | 382 | 3.214328 | GCCTGGGTTGGTGAATAGTATG | 58.786 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
385 | 386 | 3.009584 | TGGGTTGGTGAATAGTATGCACA | 59.990 | 43.478 | 20.74 | 6.47 | 34.33 | 4.57 |
404 | 405 | 5.216648 | GCACAGTTTATTTTCGCTGGTTTA | 58.783 | 37.500 | 0.00 | 0.00 | 33.62 | 2.01 |
409 | 411 | 9.320352 | ACAGTTTATTTTCGCTGGTTTATTTTT | 57.680 | 25.926 | 0.00 | 0.00 | 33.62 | 1.94 |
417 | 419 | 4.825085 | TCGCTGGTTTATTTTTGTTCTCCT | 59.175 | 37.500 | 0.00 | 0.00 | 0.00 | 3.69 |
418 | 420 | 5.048991 | TCGCTGGTTTATTTTTGTTCTCCTC | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
419 | 421 | 5.470368 | GCTGGTTTATTTTTGTTCTCCTCC | 58.530 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
420 | 422 | 5.566826 | GCTGGTTTATTTTTGTTCTCCTCCC | 60.567 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
421 | 423 | 5.459505 | TGGTTTATTTTTGTTCTCCTCCCA | 58.540 | 37.500 | 0.00 | 0.00 | 0.00 | 4.37 |
422 | 424 | 5.303333 | TGGTTTATTTTTGTTCTCCTCCCAC | 59.697 | 40.000 | 0.00 | 0.00 | 0.00 | 4.61 |
423 | 425 | 5.458015 | GTTTATTTTTGTTCTCCTCCCACG | 58.542 | 41.667 | 0.00 | 0.00 | 0.00 | 4.94 |
424 | 426 | 1.975660 | TTTTTGTTCTCCTCCCACGG | 58.024 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
796 | 814 | 4.379243 | CCAGCCGTCACCTCGCTT | 62.379 | 66.667 | 0.00 | 0.00 | 0.00 | 4.68 |
874 | 892 | 2.815211 | GTCGAGCAGATGCCGCAA | 60.815 | 61.111 | 0.00 | 0.00 | 43.38 | 4.85 |
1020 | 1039 | 0.533978 | TGGTGTCGCTAAAGCTGCAA | 60.534 | 50.000 | 1.02 | 0.00 | 39.32 | 4.08 |
1394 | 1453 | 5.410924 | CCACTCTGATCGTGTTTCAGATAA | 58.589 | 41.667 | 4.03 | 0.00 | 46.26 | 1.75 |
1410 | 1471 | 9.809096 | GTTTCAGATAACAGATGAATCAGAGTA | 57.191 | 33.333 | 0.00 | 0.00 | 33.26 | 2.59 |
1453 | 1514 | 4.736168 | GCGAGTCACTTAGATTGAGCATCT | 60.736 | 45.833 | 0.00 | 0.00 | 45.08 | 2.90 |
1485 | 1546 | 2.128367 | ATTTTTCCGTTGCGTGGTTC | 57.872 | 45.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1533 | 1595 | 9.331282 | CCTGTTAAATTTACTAGCTTATCTGCT | 57.669 | 33.333 | 0.00 | 0.00 | 46.11 | 4.24 |
1582 | 1653 | 6.287589 | AGGTCCAGTCAAGTCTAATGTAAG | 57.712 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
1670 | 1744 | 3.622459 | GCAGACTGCAAAACACGTT | 57.378 | 47.368 | 22.62 | 0.00 | 44.26 | 3.99 |
1808 | 1882 | 4.701651 | TCTGATGTTGCTTTACCTTCATGG | 59.298 | 41.667 | 0.00 | 0.00 | 42.93 | 3.66 |
1934 | 2008 | 2.689983 | GTTGTGCCATTAGCTTAGCCAT | 59.310 | 45.455 | 0.00 | 0.00 | 44.23 | 4.40 |
2003 | 2079 | 2.293586 | TGGGGTAGGCTAGAGGTGAAAT | 60.294 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2140 | 2216 | 3.054065 | AGACTCCTCCCATGTCAAATTCC | 60.054 | 47.826 | 0.00 | 0.00 | 33.56 | 3.01 |
2166 | 2244 | 1.065854 | CCGCCCTCTCTTGACATTCTT | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
2212 | 2290 | 1.758514 | CGGAGCTTCTGGAGGCCTA | 60.759 | 63.158 | 4.42 | 0.00 | 33.44 | 3.93 |
2463 | 2541 | 7.040686 | CCTGTAGAACTTGCCTTTTAGCTTTTA | 60.041 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
2473 | 2551 | 5.357032 | GCCTTTTAGCTTTTATGGCACTCTA | 59.643 | 40.000 | 0.00 | 0.00 | 38.79 | 2.43 |
2519 | 2597 | 1.143838 | CGCCACTTCATCCATCCGA | 59.856 | 57.895 | 0.00 | 0.00 | 0.00 | 4.55 |
2578 | 2656 | 1.001764 | CTCCTGCAGCATTGACCCA | 60.002 | 57.895 | 8.66 | 0.00 | 0.00 | 4.51 |
2709 | 2787 | 5.567430 | ACTAAGCCTAAACCCTTTCGATTT | 58.433 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2789 | 2867 | 0.452987 | CACCACATCATCCGCAAAGG | 59.547 | 55.000 | 0.00 | 0.00 | 42.97 | 3.11 |
2820 | 2898 | 7.462328 | ACACCATGGGATATCTCCTTGTATATT | 59.538 | 37.037 | 18.09 | 0.00 | 41.74 | 1.28 |
2898 | 2976 | 5.047731 | CCTGATGCAGTCCTATCTTAATCGA | 60.048 | 44.000 | 0.00 | 0.00 | 0.00 | 3.59 |
2907 | 2986 | 7.807433 | CAGTCCTATCTTAATCGAGAAGTCATG | 59.193 | 40.741 | 9.10 | 0.00 | 0.00 | 3.07 |
2969 | 3048 | 3.096852 | TCGTACATGTCCTTGATGAGGT | 58.903 | 45.455 | 0.00 | 0.00 | 46.39 | 3.85 |
3022 | 3101 | 0.114954 | AGGCCCACCACATGACATTT | 59.885 | 50.000 | 0.00 | 0.00 | 39.06 | 2.32 |
3142 | 3221 | 1.299976 | GGCTTCCATGGTCGACCTT | 59.700 | 57.895 | 33.39 | 25.40 | 36.82 | 3.50 |
3143 | 3222 | 0.322546 | GGCTTCCATGGTCGACCTTT | 60.323 | 55.000 | 33.39 | 19.20 | 36.82 | 3.11 |
3144 | 3223 | 1.534729 | GCTTCCATGGTCGACCTTTT | 58.465 | 50.000 | 33.39 | 16.68 | 36.82 | 2.27 |
3145 | 3224 | 2.617021 | GGCTTCCATGGTCGACCTTTTA | 60.617 | 50.000 | 33.39 | 15.47 | 36.82 | 1.52 |
3146 | 3225 | 3.078837 | GCTTCCATGGTCGACCTTTTAA | 58.921 | 45.455 | 33.39 | 20.82 | 36.82 | 1.52 |
3147 | 3226 | 3.119955 | GCTTCCATGGTCGACCTTTTAAC | 60.120 | 47.826 | 33.39 | 14.85 | 36.82 | 2.01 |
3148 | 3227 | 2.690786 | TCCATGGTCGACCTTTTAACG | 58.309 | 47.619 | 33.39 | 15.47 | 36.82 | 3.18 |
3149 | 3228 | 1.129811 | CCATGGTCGACCTTTTAACGC | 59.870 | 52.381 | 33.39 | 5.94 | 36.82 | 4.84 |
3150 | 3229 | 1.801771 | CATGGTCGACCTTTTAACGCA | 59.198 | 47.619 | 33.39 | 11.97 | 36.82 | 5.24 |
3151 | 3230 | 2.172851 | TGGTCGACCTTTTAACGCAT | 57.827 | 45.000 | 33.39 | 0.00 | 36.82 | 4.73 |
3152 | 3231 | 2.496111 | TGGTCGACCTTTTAACGCATT | 58.504 | 42.857 | 33.39 | 0.00 | 36.82 | 3.56 |
3153 | 3232 | 3.661944 | TGGTCGACCTTTTAACGCATTA | 58.338 | 40.909 | 33.39 | 7.24 | 36.82 | 1.90 |
3154 | 3233 | 4.063689 | TGGTCGACCTTTTAACGCATTAA | 58.936 | 39.130 | 33.39 | 6.77 | 36.82 | 1.40 |
3155 | 3234 | 4.083908 | TGGTCGACCTTTTAACGCATTAAC | 60.084 | 41.667 | 33.39 | 2.93 | 36.82 | 2.01 |
3156 | 3235 | 4.076985 | GTCGACCTTTTAACGCATTAACG | 58.923 | 43.478 | 3.51 | 0.00 | 39.50 | 3.18 |
3157 | 3236 | 2.836161 | CGACCTTTTAACGCATTAACGC | 59.164 | 45.455 | 0.00 | 0.00 | 36.19 | 4.84 |
3169 | 3248 | 3.769058 | GCATTAACGCGTGTATAAGTCG | 58.231 | 45.455 | 14.98 | 2.34 | 0.00 | 4.18 |
3170 | 3249 | 3.241322 | GCATTAACGCGTGTATAAGTCGT | 59.759 | 43.478 | 14.98 | 0.00 | 34.63 | 4.34 |
3171 | 3250 | 4.602524 | GCATTAACGCGTGTATAAGTCGTC | 60.603 | 45.833 | 14.98 | 0.00 | 32.53 | 4.20 |
3172 | 3251 | 2.907910 | AACGCGTGTATAAGTCGTCT | 57.092 | 45.000 | 14.98 | 0.00 | 32.53 | 4.18 |
3173 | 3252 | 2.907910 | ACGCGTGTATAAGTCGTCTT | 57.092 | 45.000 | 12.93 | 0.00 | 37.65 | 3.01 |
3174 | 3253 | 2.512885 | ACGCGTGTATAAGTCGTCTTG | 58.487 | 47.619 | 12.93 | 0.00 | 35.36 | 3.02 |
3175 | 3254 | 2.095567 | ACGCGTGTATAAGTCGTCTTGT | 60.096 | 45.455 | 12.93 | 0.99 | 35.36 | 3.16 |
3176 | 3255 | 2.525096 | CGCGTGTATAAGTCGTCTTGTC | 59.475 | 50.000 | 5.11 | 0.00 | 35.36 | 3.18 |
3177 | 3256 | 3.727079 | CGCGTGTATAAGTCGTCTTGTCT | 60.727 | 47.826 | 5.11 | 0.00 | 35.36 | 3.41 |
3178 | 3257 | 3.542704 | GCGTGTATAAGTCGTCTTGTCTG | 59.457 | 47.826 | 5.11 | 0.00 | 35.36 | 3.51 |
3179 | 3258 | 4.720090 | CGTGTATAAGTCGTCTTGTCTGT | 58.280 | 43.478 | 5.11 | 0.00 | 35.36 | 3.41 |
3180 | 3259 | 5.152097 | CGTGTATAAGTCGTCTTGTCTGTT | 58.848 | 41.667 | 5.11 | 0.00 | 35.36 | 3.16 |
3181 | 3260 | 6.309436 | CGTGTATAAGTCGTCTTGTCTGTTA | 58.691 | 40.000 | 5.11 | 0.00 | 35.36 | 2.41 |
3229 | 3308 | 2.841442 | ACCAGTGACAGAGTTTAGGC | 57.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
3289 | 3370 | 4.444720 | GTCGTCTTGTCTGTTAAGGTTCAG | 59.555 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
3518 | 5713 | 8.958043 | GTTCTGTTGTTTCAATTCATGTCTAAC | 58.042 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
3545 | 5740 | 3.972133 | TCATTAACTCTCCACGGAGGTA | 58.028 | 45.455 | 13.13 | 1.32 | 42.20 | 3.08 |
3612 | 5807 | 6.317642 | ACTCTCAGTCACATACTCACATCTAC | 59.682 | 42.308 | 0.00 | 0.00 | 35.76 | 2.59 |
3613 | 5808 | 6.418946 | TCTCAGTCACATACTCACATCTACT | 58.581 | 40.000 | 0.00 | 0.00 | 35.76 | 2.57 |
3614 | 5809 | 6.540551 | TCTCAGTCACATACTCACATCTACTC | 59.459 | 42.308 | 0.00 | 0.00 | 35.76 | 2.59 |
3615 | 5810 | 5.590663 | TCAGTCACATACTCACATCTACTCC | 59.409 | 44.000 | 0.00 | 0.00 | 35.76 | 3.85 |
3616 | 5811 | 4.890581 | AGTCACATACTCACATCTACTCCC | 59.109 | 45.833 | 0.00 | 0.00 | 30.33 | 4.30 |
3617 | 5812 | 4.890581 | GTCACATACTCACATCTACTCCCT | 59.109 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
3618 | 5813 | 5.009210 | GTCACATACTCACATCTACTCCCTC | 59.991 | 48.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3619 | 5814 | 4.279671 | CACATACTCACATCTACTCCCTCC | 59.720 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3620 | 5815 | 2.060050 | ACTCACATCTACTCCCTCCG | 57.940 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3621 | 5816 | 1.285373 | ACTCACATCTACTCCCTCCGT | 59.715 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
3622 | 5817 | 2.291670 | ACTCACATCTACTCCCTCCGTT | 60.292 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
3623 | 5818 | 2.359531 | CTCACATCTACTCCCTCCGTTC | 59.640 | 54.545 | 0.00 | 0.00 | 0.00 | 3.95 |
3624 | 5819 | 1.409427 | CACATCTACTCCCTCCGTTCC | 59.591 | 57.143 | 0.00 | 0.00 | 0.00 | 3.62 |
3625 | 5820 | 1.288335 | ACATCTACTCCCTCCGTTCCT | 59.712 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
3626 | 5821 | 2.512896 | ACATCTACTCCCTCCGTTCCTA | 59.487 | 50.000 | 0.00 | 0.00 | 0.00 | 2.94 |
3627 | 5822 | 3.053095 | ACATCTACTCCCTCCGTTCCTAA | 60.053 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
3628 | 5823 | 3.744940 | TCTACTCCCTCCGTTCCTAAA | 57.255 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
3629 | 5824 | 4.261411 | TCTACTCCCTCCGTTCCTAAAT | 57.739 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
3630 | 5825 | 5.393068 | TCTACTCCCTCCGTTCCTAAATA | 57.607 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
3631 | 5826 | 5.961897 | TCTACTCCCTCCGTTCCTAAATAT | 58.038 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
3632 | 5827 | 6.379579 | TCTACTCCCTCCGTTCCTAAATATT | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3633 | 5828 | 5.970501 | ACTCCCTCCGTTCCTAAATATTT | 57.029 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
3634 | 5829 | 5.681639 | ACTCCCTCCGTTCCTAAATATTTG | 58.318 | 41.667 | 11.05 | 1.40 | 0.00 | 2.32 |
3635 | 5830 | 5.191124 | ACTCCCTCCGTTCCTAAATATTTGT | 59.809 | 40.000 | 11.05 | 0.00 | 0.00 | 2.83 |
3636 | 5831 | 5.677567 | TCCCTCCGTTCCTAAATATTTGTC | 58.322 | 41.667 | 11.05 | 0.00 | 0.00 | 3.18 |
3637 | 5832 | 5.427481 | TCCCTCCGTTCCTAAATATTTGTCT | 59.573 | 40.000 | 11.05 | 0.00 | 0.00 | 3.41 |
3638 | 5833 | 6.069847 | TCCCTCCGTTCCTAAATATTTGTCTT | 60.070 | 38.462 | 11.05 | 0.00 | 0.00 | 3.01 |
3639 | 5834 | 6.602009 | CCCTCCGTTCCTAAATATTTGTCTTT | 59.398 | 38.462 | 11.05 | 0.00 | 0.00 | 2.52 |
3640 | 5835 | 7.122204 | CCCTCCGTTCCTAAATATTTGTCTTTT | 59.878 | 37.037 | 11.05 | 0.00 | 0.00 | 2.27 |
3641 | 5836 | 8.520351 | CCTCCGTTCCTAAATATTTGTCTTTTT | 58.480 | 33.333 | 11.05 | 0.00 | 0.00 | 1.94 |
3669 | 5864 | 8.964420 | AAATTTCAAATGAACTACCACATACG | 57.036 | 30.769 | 0.00 | 0.00 | 33.13 | 3.06 |
3670 | 5865 | 6.489127 | TTTCAAATGAACTACCACATACGG | 57.511 | 37.500 | 0.00 | 0.00 | 33.13 | 4.02 |
3671 | 5866 | 5.408880 | TCAAATGAACTACCACATACGGA | 57.591 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
3672 | 5867 | 5.984725 | TCAAATGAACTACCACATACGGAT | 58.015 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
3673 | 5868 | 5.815222 | TCAAATGAACTACCACATACGGATG | 59.185 | 40.000 | 5.94 | 5.94 | 39.16 | 3.51 |
3675 | 5870 | 6.474140 | AATGAACTACCACATACGGATGTA | 57.526 | 37.500 | 14.23 | 0.00 | 44.82 | 2.29 |
3676 | 5871 | 6.665992 | ATGAACTACCACATACGGATGTAT | 57.334 | 37.500 | 14.23 | 7.46 | 44.82 | 2.29 |
3677 | 5872 | 7.770366 | ATGAACTACCACATACGGATGTATA | 57.230 | 36.000 | 14.23 | 8.27 | 44.82 | 1.47 |
3678 | 5873 | 7.770366 | TGAACTACCACATACGGATGTATAT | 57.230 | 36.000 | 14.23 | 4.37 | 44.82 | 0.86 |
3679 | 5874 | 8.866970 | TGAACTACCACATACGGATGTATATA | 57.133 | 34.615 | 14.23 | 5.36 | 44.82 | 0.86 |
3680 | 5875 | 8.953313 | TGAACTACCACATACGGATGTATATAG | 58.047 | 37.037 | 14.23 | 16.35 | 44.82 | 1.31 |
3681 | 5876 | 9.170734 | GAACTACCACATACGGATGTATATAGA | 57.829 | 37.037 | 22.62 | 5.04 | 44.82 | 1.98 |
3682 | 5877 | 8.503458 | ACTACCACATACGGATGTATATAGAC | 57.497 | 38.462 | 22.62 | 0.00 | 44.82 | 2.59 |
3683 | 5878 | 8.105197 | ACTACCACATACGGATGTATATAGACA | 58.895 | 37.037 | 22.62 | 2.07 | 44.82 | 3.41 |
3684 | 5879 | 7.956328 | ACCACATACGGATGTATATAGACAT | 57.044 | 36.000 | 14.23 | 12.70 | 44.82 | 3.06 |
3686 | 5881 | 9.642343 | ACCACATACGGATGTATATAGACATAT | 57.358 | 33.333 | 14.23 | 5.08 | 44.82 | 1.78 |
3715 | 5910 | 6.734104 | AGTGTAGATTCACTCATTTTGCTC | 57.266 | 37.500 | 0.00 | 0.00 | 44.07 | 4.26 |
3716 | 5911 | 5.645497 | AGTGTAGATTCACTCATTTTGCTCC | 59.355 | 40.000 | 0.00 | 0.00 | 44.07 | 4.70 |
3717 | 5912 | 4.631377 | TGTAGATTCACTCATTTTGCTCCG | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
3718 | 5913 | 3.679389 | AGATTCACTCATTTTGCTCCGT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
3719 | 5914 | 4.832248 | AGATTCACTCATTTTGCTCCGTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
3720 | 5915 | 5.431765 | AGATTCACTCATTTTGCTCCGTAT | 58.568 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
3721 | 5916 | 4.944962 | TTCACTCATTTTGCTCCGTATG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 2.39 |
3722 | 5917 | 3.937814 | TCACTCATTTTGCTCCGTATGT | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
3723 | 5918 | 5.079689 | TCACTCATTTTGCTCCGTATGTA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
3724 | 5919 | 4.868171 | TCACTCATTTTGCTCCGTATGTAC | 59.132 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
3725 | 5920 | 4.870426 | CACTCATTTTGCTCCGTATGTACT | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
3726 | 5921 | 5.005779 | CACTCATTTTGCTCCGTATGTACTC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3727 | 5922 | 5.079689 | TCATTTTGCTCCGTATGTACTCA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3728 | 5923 | 4.868171 | TCATTTTGCTCCGTATGTACTCAC | 59.132 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3729 | 5924 | 4.530710 | TTTTGCTCCGTATGTACTCACT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
3730 | 5925 | 4.530710 | TTTGCTCCGTATGTACTCACTT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
3731 | 5926 | 3.503827 | TGCTCCGTATGTACTCACTTG | 57.496 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
3732 | 5927 | 2.823747 | TGCTCCGTATGTACTCACTTGT | 59.176 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3733 | 5928 | 3.257375 | TGCTCCGTATGTACTCACTTGTT | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
3734 | 5929 | 3.612860 | GCTCCGTATGTACTCACTTGTTG | 59.387 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
3735 | 5930 | 4.617530 | GCTCCGTATGTACTCACTTGTTGA | 60.618 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
3736 | 5931 | 5.456548 | TCCGTATGTACTCACTTGTTGAA | 57.543 | 39.130 | 0.00 | 0.00 | 32.21 | 2.69 |
3737 | 5932 | 5.845103 | TCCGTATGTACTCACTTGTTGAAA | 58.155 | 37.500 | 0.00 | 0.00 | 32.21 | 2.69 |
3738 | 5933 | 6.460781 | TCCGTATGTACTCACTTGTTGAAAT | 58.539 | 36.000 | 0.00 | 0.00 | 32.21 | 2.17 |
3739 | 5934 | 6.588756 | TCCGTATGTACTCACTTGTTGAAATC | 59.411 | 38.462 | 0.00 | 0.00 | 32.21 | 2.17 |
3740 | 5935 | 6.590292 | CCGTATGTACTCACTTGTTGAAATCT | 59.410 | 38.462 | 0.00 | 0.00 | 32.21 | 2.40 |
3741 | 5936 | 7.201444 | CCGTATGTACTCACTTGTTGAAATCTC | 60.201 | 40.741 | 0.00 | 0.00 | 32.21 | 2.75 |
3742 | 5937 | 7.542477 | CGTATGTACTCACTTGTTGAAATCTCT | 59.458 | 37.037 | 0.00 | 0.00 | 32.21 | 3.10 |
3743 | 5938 | 9.856488 | GTATGTACTCACTTGTTGAAATCTCTA | 57.144 | 33.333 | 0.00 | 0.00 | 32.21 | 2.43 |
3744 | 5939 | 8.994429 | ATGTACTCACTTGTTGAAATCTCTAG | 57.006 | 34.615 | 0.00 | 0.00 | 32.21 | 2.43 |
3745 | 5940 | 8.178313 | TGTACTCACTTGTTGAAATCTCTAGA | 57.822 | 34.615 | 0.00 | 0.00 | 32.21 | 2.43 |
3746 | 5941 | 8.638873 | TGTACTCACTTGTTGAAATCTCTAGAA | 58.361 | 33.333 | 0.00 | 0.00 | 32.21 | 2.10 |
3747 | 5942 | 9.477484 | GTACTCACTTGTTGAAATCTCTAGAAA | 57.523 | 33.333 | 0.00 | 0.00 | 32.21 | 2.52 |
3748 | 5943 | 8.600449 | ACTCACTTGTTGAAATCTCTAGAAAG | 57.400 | 34.615 | 0.00 | 0.00 | 32.21 | 2.62 |
3749 | 5944 | 8.424918 | ACTCACTTGTTGAAATCTCTAGAAAGA | 58.575 | 33.333 | 0.00 | 0.00 | 32.21 | 2.52 |
3750 | 5945 | 8.594881 | TCACTTGTTGAAATCTCTAGAAAGAC | 57.405 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
3751 | 5946 | 8.204160 | TCACTTGTTGAAATCTCTAGAAAGACA | 58.796 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3752 | 5947 | 8.830580 | CACTTGTTGAAATCTCTAGAAAGACAA | 58.169 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3753 | 5948 | 9.396022 | ACTTGTTGAAATCTCTAGAAAGACAAA | 57.604 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
3765 | 5960 | 9.813080 | CTCTAGAAAGACAAAAATTTAGGAACG | 57.187 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
3766 | 5961 | 8.780249 | TCTAGAAAGACAAAAATTTAGGAACGG | 58.220 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
3767 | 5962 | 7.576861 | AGAAAGACAAAAATTTAGGAACGGA | 57.423 | 32.000 | 0.00 | 0.00 | 0.00 | 4.69 |
3768 | 5963 | 7.649057 | AGAAAGACAAAAATTTAGGAACGGAG | 58.351 | 34.615 | 0.00 | 0.00 | 0.00 | 4.63 |
3769 | 5964 | 5.959618 | AGACAAAAATTTAGGAACGGAGG | 57.040 | 39.130 | 0.00 | 0.00 | 0.00 | 4.30 |
3770 | 5965 | 4.765339 | AGACAAAAATTTAGGAACGGAGGG | 59.235 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3771 | 5966 | 4.732065 | ACAAAAATTTAGGAACGGAGGGA | 58.268 | 39.130 | 0.00 | 0.00 | 0.00 | 4.20 |
3772 | 5967 | 4.765339 | ACAAAAATTTAGGAACGGAGGGAG | 59.235 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3791 | 5986 | 9.268282 | GGAGGGAGTATGATAATTGGAGTATAA | 57.732 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
3897 | 9384 | 4.202461 | ACAATTCACCAAGAGAAGCCAGTA | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3899 | 9386 | 2.325484 | TCACCAAGAGAAGCCAGTACA | 58.675 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
4095 | 9582 | 0.105039 | CGATCTCACCTTGGGCTACC | 59.895 | 60.000 | 0.00 | 0.00 | 37.24 | 3.18 |
4099 | 9586 | 1.207791 | CTCACCTTGGGCTACCTCAT | 58.792 | 55.000 | 0.00 | 0.00 | 37.76 | 2.90 |
4137 | 9624 | 1.140312 | GATTGAGGCCTATGACCCCA | 58.860 | 55.000 | 4.42 | 0.00 | 0.00 | 4.96 |
4203 | 9690 | 3.187022 | GCCAATTTGTTGACAATCTTGCC | 59.813 | 43.478 | 11.31 | 1.84 | 35.55 | 4.52 |
4288 | 9777 | 4.226427 | ACATGATCTGTGTTGGCTACAT | 57.774 | 40.909 | 4.84 | 0.00 | 39.39 | 2.29 |
4593 | 10083 | 4.997905 | TGTTGCTTTTCTCTCTGAATCG | 57.002 | 40.909 | 0.00 | 0.00 | 34.24 | 3.34 |
4600 | 10090 | 1.835494 | TCTCTCTGAATCGTCGGGTT | 58.165 | 50.000 | 0.00 | 0.00 | 0.00 | 4.11 |
4751 | 10241 | 8.429493 | TGCATTCAGATTCATGAAGTACTTAG | 57.571 | 34.615 | 14.54 | 2.00 | 42.20 | 2.18 |
5370 | 10860 | 5.749596 | GCCATGGCAAAACTTTAACTTTT | 57.250 | 34.783 | 32.08 | 0.00 | 41.49 | 2.27 |
5371 | 10861 | 6.852858 | GCCATGGCAAAACTTTAACTTTTA | 57.147 | 33.333 | 32.08 | 0.00 | 41.49 | 1.52 |
5372 | 10862 | 7.433708 | GCCATGGCAAAACTTTAACTTTTAT | 57.566 | 32.000 | 32.08 | 0.00 | 41.49 | 1.40 |
5373 | 10863 | 7.870826 | GCCATGGCAAAACTTTAACTTTTATT | 58.129 | 30.769 | 32.08 | 0.00 | 41.49 | 1.40 |
5374 | 10864 | 7.802720 | GCCATGGCAAAACTTTAACTTTTATTG | 59.197 | 33.333 | 32.08 | 0.00 | 41.49 | 1.90 |
5375 | 10865 | 7.802720 | CCATGGCAAAACTTTAACTTTTATTGC | 59.197 | 33.333 | 0.00 | 0.00 | 40.73 | 3.56 |
5379 | 10869 | 8.712341 | GCAAAACTTTAACTTTTATTGCCATG | 57.288 | 30.769 | 0.00 | 0.00 | 36.75 | 3.66 |
5380 | 10870 | 7.802720 | GCAAAACTTTAACTTTTATTGCCATGG | 59.197 | 33.333 | 7.63 | 7.63 | 36.75 | 3.66 |
5381 | 10871 | 7.433708 | AAACTTTAACTTTTATTGCCATGGC | 57.566 | 32.000 | 30.54 | 30.54 | 42.35 | 4.40 |
5397 | 10887 | 6.499234 | GCCATGGCAAAACTTTATTTCATT | 57.501 | 33.333 | 32.08 | 0.00 | 41.49 | 2.57 |
5398 | 10888 | 6.545508 | GCCATGGCAAAACTTTATTTCATTC | 58.454 | 36.000 | 32.08 | 0.00 | 41.49 | 2.67 |
5399 | 10889 | 6.149142 | GCCATGGCAAAACTTTATTTCATTCA | 59.851 | 34.615 | 32.08 | 0.00 | 41.49 | 2.57 |
5400 | 10890 | 7.308469 | GCCATGGCAAAACTTTATTTCATTCAA | 60.308 | 33.333 | 32.08 | 0.00 | 41.49 | 2.69 |
5401 | 10891 | 8.231837 | CCATGGCAAAACTTTATTTCATTCAAG | 58.768 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
5402 | 10892 | 7.188468 | TGGCAAAACTTTATTTCATTCAAGC | 57.812 | 32.000 | 0.00 | 0.00 | 0.00 | 4.01 |
5403 | 10893 | 6.765036 | TGGCAAAACTTTATTTCATTCAAGCA | 59.235 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
5404 | 10894 | 7.444792 | TGGCAAAACTTTATTTCATTCAAGCAT | 59.555 | 29.630 | 0.00 | 0.00 | 0.00 | 3.79 |
5405 | 10895 | 7.747357 | GGCAAAACTTTATTTCATTCAAGCATG | 59.253 | 33.333 | 0.00 | 0.00 | 0.00 | 4.06 |
5406 | 10896 | 7.747357 | GCAAAACTTTATTTCATTCAAGCATGG | 59.253 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
5407 | 10897 | 6.973229 | AACTTTATTTCATTCAAGCATGGC | 57.027 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
5408 | 10898 | 6.040209 | ACTTTATTTCATTCAAGCATGGCA | 57.960 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
5409 | 10899 | 6.465948 | ACTTTATTTCATTCAAGCATGGCAA | 58.534 | 32.000 | 0.00 | 0.00 | 0.00 | 4.52 |
5410 | 10900 | 6.369615 | ACTTTATTTCATTCAAGCATGGCAAC | 59.630 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
5411 | 10901 | 4.546829 | ATTTCATTCAAGCATGGCAACT | 57.453 | 36.364 | 0.00 | 0.00 | 37.61 | 3.16 |
5412 | 10902 | 3.581024 | TTCATTCAAGCATGGCAACTC | 57.419 | 42.857 | 0.00 | 0.00 | 37.61 | 3.01 |
5413 | 10903 | 2.799017 | TCATTCAAGCATGGCAACTCT | 58.201 | 42.857 | 0.00 | 0.00 | 37.61 | 3.24 |
5414 | 10904 | 3.159472 | TCATTCAAGCATGGCAACTCTT | 58.841 | 40.909 | 0.00 | 0.00 | 37.61 | 2.85 |
5415 | 10905 | 3.575256 | TCATTCAAGCATGGCAACTCTTT | 59.425 | 39.130 | 0.00 | 0.00 | 37.61 | 2.52 |
5416 | 10906 | 3.374220 | TTCAAGCATGGCAACTCTTTG | 57.626 | 42.857 | 0.00 | 0.00 | 35.62 | 2.77 |
5417 | 10907 | 1.614903 | TCAAGCATGGCAACTCTTTGG | 59.385 | 47.619 | 0.00 | 0.00 | 32.81 | 3.28 |
5418 | 10908 | 1.342174 | CAAGCATGGCAACTCTTTGGT | 59.658 | 47.619 | 0.00 | 0.00 | 32.81 | 3.67 |
5419 | 10909 | 1.251251 | AGCATGGCAACTCTTTGGTC | 58.749 | 50.000 | 0.00 | 0.00 | 32.81 | 4.02 |
5420 | 10910 | 0.109597 | GCATGGCAACTCTTTGGTCG | 60.110 | 55.000 | 0.00 | 0.00 | 32.81 | 4.79 |
5421 | 10911 | 1.238439 | CATGGCAACTCTTTGGTCGT | 58.762 | 50.000 | 0.00 | 0.00 | 32.81 | 4.34 |
5422 | 10912 | 1.069022 | CATGGCAACTCTTTGGTCGTG | 60.069 | 52.381 | 0.00 | 0.00 | 32.81 | 4.35 |
5423 | 10913 | 0.107410 | TGGCAACTCTTTGGTCGTGT | 60.107 | 50.000 | 0.00 | 0.00 | 32.81 | 4.49 |
5424 | 10914 | 1.139256 | TGGCAACTCTTTGGTCGTGTA | 59.861 | 47.619 | 0.00 | 0.00 | 32.81 | 2.90 |
5425 | 10915 | 1.798813 | GGCAACTCTTTGGTCGTGTAG | 59.201 | 52.381 | 0.00 | 0.00 | 32.81 | 2.74 |
5426 | 10916 | 2.480845 | GCAACTCTTTGGTCGTGTAGT | 58.519 | 47.619 | 0.00 | 0.00 | 32.81 | 2.73 |
5427 | 10917 | 3.553508 | GGCAACTCTTTGGTCGTGTAGTA | 60.554 | 47.826 | 0.00 | 0.00 | 32.81 | 1.82 |
5428 | 10918 | 4.243270 | GCAACTCTTTGGTCGTGTAGTAT | 58.757 | 43.478 | 0.00 | 0.00 | 32.81 | 2.12 |
5429 | 10919 | 4.091509 | GCAACTCTTTGGTCGTGTAGTATG | 59.908 | 45.833 | 0.00 | 0.00 | 32.81 | 2.39 |
5430 | 10920 | 4.451629 | ACTCTTTGGTCGTGTAGTATGG | 57.548 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
5431 | 10921 | 4.084287 | ACTCTTTGGTCGTGTAGTATGGA | 58.916 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
5432 | 10922 | 4.710375 | ACTCTTTGGTCGTGTAGTATGGAT | 59.290 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
5433 | 10923 | 5.187186 | ACTCTTTGGTCGTGTAGTATGGATT | 59.813 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5434 | 10924 | 6.045072 | TCTTTGGTCGTGTAGTATGGATTT | 57.955 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
5435 | 10925 | 6.103997 | TCTTTGGTCGTGTAGTATGGATTTC | 58.896 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5436 | 10926 | 4.395959 | TGGTCGTGTAGTATGGATTTCC | 57.604 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
5437 | 10927 | 4.028131 | TGGTCGTGTAGTATGGATTTCCT | 58.972 | 43.478 | 0.00 | 0.00 | 36.82 | 3.36 |
5438 | 10928 | 5.202765 | TGGTCGTGTAGTATGGATTTCCTA | 58.797 | 41.667 | 0.00 | 0.00 | 36.82 | 2.94 |
5439 | 10929 | 5.301045 | TGGTCGTGTAGTATGGATTTCCTAG | 59.699 | 44.000 | 0.00 | 0.00 | 36.82 | 3.02 |
5440 | 10930 | 5.533903 | GGTCGTGTAGTATGGATTTCCTAGA | 59.466 | 44.000 | 0.00 | 0.00 | 36.82 | 2.43 |
5441 | 10931 | 6.294065 | GGTCGTGTAGTATGGATTTCCTAGAG | 60.294 | 46.154 | 0.00 | 0.00 | 36.82 | 2.43 |
5442 | 10932 | 6.262720 | GTCGTGTAGTATGGATTTCCTAGAGT | 59.737 | 42.308 | 0.00 | 0.00 | 36.82 | 3.24 |
5443 | 10933 | 7.443575 | GTCGTGTAGTATGGATTTCCTAGAGTA | 59.556 | 40.741 | 0.00 | 0.00 | 36.82 | 2.59 |
5444 | 10934 | 8.162085 | TCGTGTAGTATGGATTTCCTAGAGTAT | 58.838 | 37.037 | 0.00 | 0.00 | 36.82 | 2.12 |
5445 | 10935 | 8.794553 | CGTGTAGTATGGATTTCCTAGAGTATT | 58.205 | 37.037 | 0.00 | 0.00 | 36.82 | 1.89 |
5483 | 10973 | 5.618056 | TTTTCATCACTTGCACTCTCATC | 57.382 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
5492 | 10982 | 1.071605 | GCACTCTCATCGTGTTCACC | 58.928 | 55.000 | 0.00 | 0.00 | 34.91 | 4.02 |
5503 | 10993 | 0.989890 | GTGTTCACCGTAGACATCGC | 59.010 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
5578 | 11072 | 3.006217 | CCTGTCATGGATAGCTTCATCGA | 59.994 | 47.826 | 0.00 | 0.00 | 0.00 | 3.59 |
5665 | 11159 | 6.658391 | CCAAGTGAGGAAATCATCTTCTCTTT | 59.342 | 38.462 | 3.20 | 0.00 | 42.09 | 2.52 |
5756 | 11250 | 1.009675 | GTGCAAAGACTGGTGTGCG | 60.010 | 57.895 | 0.00 | 0.00 | 39.92 | 5.34 |
5830 | 11324 | 1.139058 | CCTAAAGACACCCCGGATCAG | 59.861 | 57.143 | 0.73 | 0.00 | 0.00 | 2.90 |
5875 | 11369 | 6.084925 | CGTTAATCACGTATCTAGATGGGAC | 58.915 | 44.000 | 15.79 | 4.83 | 44.49 | 4.46 |
5886 | 11380 | 3.447025 | GATGGGACGGAGCTTCGGG | 62.447 | 68.421 | 20.69 | 0.00 | 0.00 | 5.14 |
5891 | 11385 | 2.035940 | ACGGAGCTTCGGGAGAGT | 59.964 | 61.111 | 20.69 | 0.00 | 41.75 | 3.24 |
5903 | 11397 | 0.449388 | GGGAGAGTGAAATTGCTGCG | 59.551 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
5920 | 11414 | 0.943835 | GCGTTCATGTTTTGTGGCCC | 60.944 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
5960 | 11454 | 3.817787 | CCATGCCATGGTCTCGTG | 58.182 | 61.111 | 15.89 | 8.28 | 45.54 | 4.35 |
5983 | 11477 | 1.644786 | GGTAGTTGCACCATGCCGTC | 61.645 | 60.000 | 0.00 | 0.00 | 44.23 | 4.79 |
6026 | 11520 | 3.834231 | GCAATCCTGCCATGGGTTATTAT | 59.166 | 43.478 | 15.13 | 0.00 | 43.26 | 1.28 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
3 | 4 | 3.669023 | CGTGTACTTCGACAACCTACTCC | 60.669 | 52.174 | 5.38 | 0.00 | 0.00 | 3.85 |
4 | 5 | 3.486584 | CGTGTACTTCGACAACCTACTC | 58.513 | 50.000 | 5.38 | 0.00 | 0.00 | 2.59 |
6 | 7 | 1.981533 | GCGTGTACTTCGACAACCTAC | 59.018 | 52.381 | 13.34 | 0.00 | 0.00 | 3.18 |
7 | 8 | 1.068333 | GGCGTGTACTTCGACAACCTA | 60.068 | 52.381 | 13.34 | 0.00 | 36.24 | 3.08 |
8 | 9 | 0.319297 | GGCGTGTACTTCGACAACCT | 60.319 | 55.000 | 13.34 | 0.00 | 36.24 | 3.50 |
9 | 10 | 0.598158 | TGGCGTGTACTTCGACAACC | 60.598 | 55.000 | 14.93 | 7.46 | 43.49 | 3.77 |
10 | 11 | 2.889578 | TGGCGTGTACTTCGACAAC | 58.110 | 52.632 | 14.93 | 0.00 | 43.49 | 3.32 |
12 | 13 | 0.102663 | TGTTGGCGTGTACTTCGACA | 59.897 | 50.000 | 13.69 | 13.69 | 44.80 | 4.35 |
13 | 14 | 0.505655 | GTGTTGGCGTGTACTTCGAC | 59.494 | 55.000 | 13.34 | 11.37 | 36.80 | 4.20 |
14 | 15 | 0.935831 | CGTGTTGGCGTGTACTTCGA | 60.936 | 55.000 | 13.34 | 0.00 | 0.00 | 3.71 |
15 | 16 | 1.210545 | ACGTGTTGGCGTGTACTTCG | 61.211 | 55.000 | 0.00 | 0.40 | 43.99 | 3.79 |
16 | 17 | 2.596875 | ACGTGTTGGCGTGTACTTC | 58.403 | 52.632 | 0.00 | 0.00 | 43.99 | 3.01 |
17 | 18 | 4.840168 | ACGTGTTGGCGTGTACTT | 57.160 | 50.000 | 0.00 | 0.00 | 43.99 | 2.24 |
23 | 24 | 0.237235 | CTTATTGCACGTGTTGGCGT | 59.763 | 50.000 | 18.38 | 0.63 | 46.88 | 5.68 |
24 | 25 | 0.454285 | CCTTATTGCACGTGTTGGCG | 60.454 | 55.000 | 18.38 | 1.88 | 37.94 | 5.69 |
25 | 26 | 0.878416 | TCCTTATTGCACGTGTTGGC | 59.122 | 50.000 | 18.38 | 2.58 | 0.00 | 4.52 |
26 | 27 | 1.199097 | GGTCCTTATTGCACGTGTTGG | 59.801 | 52.381 | 18.38 | 10.26 | 0.00 | 3.77 |
27 | 28 | 2.095768 | CAGGTCCTTATTGCACGTGTTG | 60.096 | 50.000 | 18.38 | 1.43 | 0.00 | 3.33 |
28 | 29 | 2.151202 | CAGGTCCTTATTGCACGTGTT | 58.849 | 47.619 | 18.38 | 5.24 | 0.00 | 3.32 |
29 | 30 | 1.346395 | TCAGGTCCTTATTGCACGTGT | 59.654 | 47.619 | 18.38 | 0.00 | 0.00 | 4.49 |
30 | 31 | 1.732259 | GTCAGGTCCTTATTGCACGTG | 59.268 | 52.381 | 12.28 | 12.28 | 0.00 | 4.49 |
31 | 32 | 1.623811 | AGTCAGGTCCTTATTGCACGT | 59.376 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
32 | 33 | 2.386661 | AGTCAGGTCCTTATTGCACG | 57.613 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
33 | 34 | 4.434520 | GACTAGTCAGGTCCTTATTGCAC | 58.565 | 47.826 | 18.20 | 0.00 | 0.00 | 4.57 |
34 | 35 | 3.451178 | GGACTAGTCAGGTCCTTATTGCA | 59.549 | 47.826 | 23.91 | 0.00 | 46.89 | 4.08 |
35 | 36 | 4.061357 | GGACTAGTCAGGTCCTTATTGC | 57.939 | 50.000 | 23.91 | 0.00 | 46.89 | 3.56 |
43 | 44 | 3.368531 | GGTTGTGATGGACTAGTCAGGTC | 60.369 | 52.174 | 23.91 | 17.13 | 0.00 | 3.85 |
44 | 45 | 2.567615 | GGTTGTGATGGACTAGTCAGGT | 59.432 | 50.000 | 23.91 | 9.20 | 0.00 | 4.00 |
45 | 46 | 2.834549 | AGGTTGTGATGGACTAGTCAGG | 59.165 | 50.000 | 23.91 | 0.00 | 0.00 | 3.86 |
46 | 47 | 3.368843 | CCAGGTTGTGATGGACTAGTCAG | 60.369 | 52.174 | 23.91 | 0.00 | 39.02 | 3.51 |
47 | 48 | 2.567169 | CCAGGTTGTGATGGACTAGTCA | 59.433 | 50.000 | 23.91 | 10.85 | 39.02 | 3.41 |
48 | 49 | 2.678190 | GCCAGGTTGTGATGGACTAGTC | 60.678 | 54.545 | 14.87 | 14.87 | 39.02 | 2.59 |
49 | 50 | 1.279271 | GCCAGGTTGTGATGGACTAGT | 59.721 | 52.381 | 0.00 | 0.00 | 39.02 | 2.57 |
50 | 51 | 1.278985 | TGCCAGGTTGTGATGGACTAG | 59.721 | 52.381 | 0.00 | 0.00 | 39.02 | 2.57 |
51 | 52 | 1.357137 | TGCCAGGTTGTGATGGACTA | 58.643 | 50.000 | 0.00 | 0.00 | 39.02 | 2.59 |
52 | 53 | 0.478072 | TTGCCAGGTTGTGATGGACT | 59.522 | 50.000 | 0.00 | 0.00 | 39.02 | 3.85 |
53 | 54 | 0.598065 | GTTGCCAGGTTGTGATGGAC | 59.402 | 55.000 | 0.00 | 0.00 | 39.02 | 4.02 |
54 | 55 | 0.478072 | AGTTGCCAGGTTGTGATGGA | 59.522 | 50.000 | 0.00 | 0.00 | 39.02 | 3.41 |
55 | 56 | 0.883833 | GAGTTGCCAGGTTGTGATGG | 59.116 | 55.000 | 0.00 | 0.00 | 39.73 | 3.51 |
56 | 57 | 1.901591 | AGAGTTGCCAGGTTGTGATG | 58.098 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
57 | 58 | 2.026822 | CCTAGAGTTGCCAGGTTGTGAT | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
58 | 59 | 1.347707 | CCTAGAGTTGCCAGGTTGTGA | 59.652 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
59 | 60 | 1.611673 | CCCTAGAGTTGCCAGGTTGTG | 60.612 | 57.143 | 0.00 | 0.00 | 0.00 | 3.33 |
60 | 61 | 0.693049 | CCCTAGAGTTGCCAGGTTGT | 59.307 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
61 | 62 | 0.693049 | ACCCTAGAGTTGCCAGGTTG | 59.307 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
62 | 63 | 1.907255 | GTACCCTAGAGTTGCCAGGTT | 59.093 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
63 | 64 | 1.203262 | TGTACCCTAGAGTTGCCAGGT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
64 | 65 | 1.568504 | TGTACCCTAGAGTTGCCAGG | 58.431 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
65 | 66 | 2.223829 | CGATGTACCCTAGAGTTGCCAG | 60.224 | 54.545 | 0.00 | 0.00 | 0.00 | 4.85 |
66 | 67 | 1.754803 | CGATGTACCCTAGAGTTGCCA | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 4.92 |
67 | 68 | 1.538419 | GCGATGTACCCTAGAGTTGCC | 60.538 | 57.143 | 0.00 | 0.00 | 0.00 | 4.52 |
68 | 69 | 1.136305 | TGCGATGTACCCTAGAGTTGC | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
69 | 70 | 3.520290 | TTGCGATGTACCCTAGAGTTG | 57.480 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
70 | 71 | 4.251268 | GTTTTGCGATGTACCCTAGAGTT | 58.749 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
71 | 72 | 3.675228 | CGTTTTGCGATGTACCCTAGAGT | 60.675 | 47.826 | 0.00 | 0.00 | 44.77 | 3.24 |
72 | 73 | 2.858344 | CGTTTTGCGATGTACCCTAGAG | 59.142 | 50.000 | 0.00 | 0.00 | 44.77 | 2.43 |
73 | 74 | 2.492881 | TCGTTTTGCGATGTACCCTAGA | 59.507 | 45.455 | 0.00 | 0.00 | 45.68 | 2.43 |
74 | 75 | 2.883574 | TCGTTTTGCGATGTACCCTAG | 58.116 | 47.619 | 0.00 | 0.00 | 45.68 | 3.02 |
76 | 77 | 3.919163 | TCGTTTTGCGATGTACCCT | 57.081 | 47.368 | 0.00 | 0.00 | 45.68 | 4.34 |
85 | 86 | 2.860735 | TGGGATTTTGTTTCGTTTTGCG | 59.139 | 40.909 | 0.00 | 0.00 | 43.01 | 4.85 |
86 | 87 | 4.093556 | TGTTGGGATTTTGTTTCGTTTTGC | 59.906 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
87 | 88 | 5.120830 | TGTGTTGGGATTTTGTTTCGTTTTG | 59.879 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
88 | 89 | 5.238583 | TGTGTTGGGATTTTGTTTCGTTTT | 58.761 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
89 | 90 | 4.822026 | TGTGTTGGGATTTTGTTTCGTTT | 58.178 | 34.783 | 0.00 | 0.00 | 0.00 | 3.60 |
90 | 91 | 4.429108 | CTGTGTTGGGATTTTGTTTCGTT | 58.571 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
91 | 92 | 3.736740 | GCTGTGTTGGGATTTTGTTTCGT | 60.737 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
92 | 93 | 2.794350 | GCTGTGTTGGGATTTTGTTTCG | 59.206 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
93 | 94 | 4.058721 | AGCTGTGTTGGGATTTTGTTTC | 57.941 | 40.909 | 0.00 | 0.00 | 0.00 | 2.78 |
94 | 95 | 4.081198 | TGAAGCTGTGTTGGGATTTTGTTT | 60.081 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
95 | 96 | 3.450457 | TGAAGCTGTGTTGGGATTTTGTT | 59.550 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
96 | 97 | 3.030291 | TGAAGCTGTGTTGGGATTTTGT | 58.970 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
97 | 98 | 3.731652 | TGAAGCTGTGTTGGGATTTTG | 57.268 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
98 | 99 | 4.961438 | AATGAAGCTGTGTTGGGATTTT | 57.039 | 36.364 | 0.00 | 0.00 | 0.00 | 1.82 |
99 | 100 | 5.324409 | TCTAATGAAGCTGTGTTGGGATTT | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
100 | 101 | 4.922206 | TCTAATGAAGCTGTGTTGGGATT | 58.078 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
101 | 102 | 4.574674 | TCTAATGAAGCTGTGTTGGGAT | 57.425 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
102 | 103 | 4.072131 | GTTCTAATGAAGCTGTGTTGGGA | 58.928 | 43.478 | 0.00 | 0.00 | 32.15 | 4.37 |
103 | 104 | 3.120199 | CGTTCTAATGAAGCTGTGTTGGG | 60.120 | 47.826 | 0.00 | 0.00 | 32.15 | 4.12 |
104 | 105 | 3.120199 | CCGTTCTAATGAAGCTGTGTTGG | 60.120 | 47.826 | 0.00 | 0.00 | 32.15 | 3.77 |
105 | 106 | 3.667960 | GCCGTTCTAATGAAGCTGTGTTG | 60.668 | 47.826 | 0.00 | 0.00 | 32.15 | 3.33 |
106 | 107 | 2.484264 | GCCGTTCTAATGAAGCTGTGTT | 59.516 | 45.455 | 0.00 | 0.00 | 32.15 | 3.32 |
107 | 108 | 2.076863 | GCCGTTCTAATGAAGCTGTGT | 58.923 | 47.619 | 0.00 | 0.00 | 32.15 | 3.72 |
108 | 109 | 1.061131 | CGCCGTTCTAATGAAGCTGTG | 59.939 | 52.381 | 0.00 | 0.00 | 32.15 | 3.66 |
109 | 110 | 1.359848 | CGCCGTTCTAATGAAGCTGT | 58.640 | 50.000 | 0.00 | 0.00 | 32.15 | 4.40 |
110 | 111 | 0.652592 | CCGCCGTTCTAATGAAGCTG | 59.347 | 55.000 | 0.00 | 0.00 | 32.15 | 4.24 |
111 | 112 | 1.090052 | GCCGCCGTTCTAATGAAGCT | 61.090 | 55.000 | 0.00 | 0.00 | 32.15 | 3.74 |
112 | 113 | 1.352056 | GCCGCCGTTCTAATGAAGC | 59.648 | 57.895 | 0.00 | 0.00 | 32.15 | 3.86 |
113 | 114 | 1.636340 | CGCCGCCGTTCTAATGAAG | 59.364 | 57.895 | 0.00 | 0.00 | 32.15 | 3.02 |
114 | 115 | 1.812093 | CCGCCGCCGTTCTAATGAA | 60.812 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
115 | 116 | 2.202824 | CCGCCGCCGTTCTAATGA | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 2.57 |
116 | 117 | 3.937062 | GCCGCCGCCGTTCTAATG | 61.937 | 66.667 | 0.00 | 0.00 | 0.00 | 1.90 |
117 | 118 | 4.157120 | AGCCGCCGCCGTTCTAAT | 62.157 | 61.111 | 0.00 | 0.00 | 34.57 | 1.73 |
131 | 132 | 3.959991 | GACTCGCTCCCAACCAGCC | 62.960 | 68.421 | 0.00 | 0.00 | 32.83 | 4.85 |
132 | 133 | 2.435059 | GACTCGCTCCCAACCAGC | 60.435 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
133 | 134 | 1.374758 | GTGACTCGCTCCCAACCAG | 60.375 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
134 | 135 | 2.741092 | GTGACTCGCTCCCAACCA | 59.259 | 61.111 | 0.00 | 0.00 | 0.00 | 3.67 |
135 | 136 | 2.432628 | CGTGACTCGCTCCCAACC | 60.433 | 66.667 | 0.00 | 0.00 | 0.00 | 3.77 |
145 | 146 | 1.061485 | GGAAAGAACGAGCGTGACTC | 58.939 | 55.000 | 0.00 | 0.00 | 42.47 | 3.36 |
146 | 147 | 0.663568 | CGGAAAGAACGAGCGTGACT | 60.664 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
147 | 148 | 0.938168 | ACGGAAAGAACGAGCGTGAC | 60.938 | 55.000 | 0.00 | 0.00 | 34.93 | 3.67 |
148 | 149 | 0.937699 | CACGGAAAGAACGAGCGTGA | 60.938 | 55.000 | 0.00 | 0.00 | 34.93 | 4.35 |
149 | 150 | 1.213094 | ACACGGAAAGAACGAGCGTG | 61.213 | 55.000 | 0.00 | 0.00 | 34.93 | 5.34 |
150 | 151 | 0.529119 | AACACGGAAAGAACGAGCGT | 60.529 | 50.000 | 0.00 | 0.00 | 34.93 | 5.07 |
151 | 152 | 0.161024 | GAACACGGAAAGAACGAGCG | 59.839 | 55.000 | 0.00 | 0.00 | 34.93 | 5.03 |
152 | 153 | 1.456165 | GAGAACACGGAAAGAACGAGC | 59.544 | 52.381 | 0.00 | 0.00 | 34.93 | 5.03 |
153 | 154 | 2.726760 | CTGAGAACACGGAAAGAACGAG | 59.273 | 50.000 | 0.00 | 0.00 | 34.93 | 4.18 |
154 | 155 | 2.100252 | ACTGAGAACACGGAAAGAACGA | 59.900 | 45.455 | 0.00 | 0.00 | 34.93 | 3.85 |
155 | 156 | 2.470821 | ACTGAGAACACGGAAAGAACG | 58.529 | 47.619 | 0.00 | 0.00 | 37.36 | 3.95 |
156 | 157 | 4.877323 | AAACTGAGAACACGGAAAGAAC | 57.123 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
157 | 158 | 5.890424 | AAAAACTGAGAACACGGAAAGAA | 57.110 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
208 | 209 | 8.789762 | GCCTAAAACCTTTGTATTTTCTCTGTA | 58.210 | 33.333 | 0.00 | 0.00 | 30.80 | 2.74 |
209 | 210 | 7.286775 | TGCCTAAAACCTTTGTATTTTCTCTGT | 59.713 | 33.333 | 0.00 | 0.00 | 30.80 | 3.41 |
210 | 211 | 7.657336 | TGCCTAAAACCTTTGTATTTTCTCTG | 58.343 | 34.615 | 0.00 | 0.00 | 30.80 | 3.35 |
211 | 212 | 7.833285 | TGCCTAAAACCTTTGTATTTTCTCT | 57.167 | 32.000 | 0.00 | 0.00 | 30.80 | 3.10 |
212 | 213 | 8.880878 | TTTGCCTAAAACCTTTGTATTTTCTC | 57.119 | 30.769 | 0.00 | 0.00 | 30.80 | 2.87 |
213 | 214 | 9.845740 | AATTTGCCTAAAACCTTTGTATTTTCT | 57.154 | 25.926 | 0.00 | 0.00 | 30.80 | 2.52 |
214 | 215 | 9.877137 | CAATTTGCCTAAAACCTTTGTATTTTC | 57.123 | 29.630 | 0.00 | 0.00 | 30.80 | 2.29 |
215 | 216 | 9.402320 | ACAATTTGCCTAAAACCTTTGTATTTT | 57.598 | 25.926 | 0.00 | 0.00 | 28.69 | 1.82 |
216 | 217 | 8.972458 | ACAATTTGCCTAAAACCTTTGTATTT | 57.028 | 26.923 | 0.00 | 0.00 | 28.69 | 1.40 |
259 | 260 | 4.384247 | CGAGCTGTTTGACAACAACAAAAA | 59.616 | 37.500 | 0.00 | 0.00 | 42.53 | 1.94 |
260 | 261 | 3.917380 | CGAGCTGTTTGACAACAACAAAA | 59.083 | 39.130 | 0.00 | 0.00 | 42.53 | 2.44 |
261 | 262 | 3.497118 | CGAGCTGTTTGACAACAACAAA | 58.503 | 40.909 | 0.00 | 0.00 | 42.53 | 2.83 |
262 | 263 | 2.730715 | GCGAGCTGTTTGACAACAACAA | 60.731 | 45.455 | 0.00 | 0.00 | 42.53 | 2.83 |
263 | 264 | 1.202132 | GCGAGCTGTTTGACAACAACA | 60.202 | 47.619 | 0.00 | 0.00 | 42.53 | 3.33 |
264 | 265 | 1.064060 | AGCGAGCTGTTTGACAACAAC | 59.936 | 47.619 | 0.00 | 0.00 | 42.53 | 3.32 |
265 | 266 | 1.063912 | CAGCGAGCTGTTTGACAACAA | 59.936 | 47.619 | 16.29 | 0.00 | 42.53 | 2.83 |
266 | 267 | 0.657312 | CAGCGAGCTGTTTGACAACA | 59.343 | 50.000 | 16.29 | 0.00 | 40.82 | 3.33 |
267 | 268 | 3.444657 | CAGCGAGCTGTTTGACAAC | 57.555 | 52.632 | 16.29 | 0.00 | 39.10 | 3.32 |
277 | 278 | 4.096382 | CCATGGTTTTAATTACAGCGAGCT | 59.904 | 41.667 | 2.57 | 0.00 | 0.00 | 4.09 |
278 | 279 | 4.142469 | ACCATGGTTTTAATTACAGCGAGC | 60.142 | 41.667 | 13.00 | 0.00 | 0.00 | 5.03 |
279 | 280 | 5.560966 | ACCATGGTTTTAATTACAGCGAG | 57.439 | 39.130 | 13.00 | 0.00 | 0.00 | 5.03 |
280 | 281 | 7.554835 | AGAATACCATGGTTTTAATTACAGCGA | 59.445 | 33.333 | 25.38 | 0.00 | 0.00 | 4.93 |
281 | 282 | 7.703328 | AGAATACCATGGTTTTAATTACAGCG | 58.297 | 34.615 | 25.38 | 0.00 | 0.00 | 5.18 |
282 | 283 | 8.682710 | TGAGAATACCATGGTTTTAATTACAGC | 58.317 | 33.333 | 25.38 | 6.85 | 0.00 | 4.40 |
293 | 294 | 9.975218 | ACTATAGTTTTTGAGAATACCATGGTT | 57.025 | 29.630 | 25.38 | 5.54 | 0.00 | 3.67 |
336 | 337 | 7.039270 | GCCCCGTTTGATAATTCAGTATTTTT | 58.961 | 34.615 | 0.00 | 0.00 | 32.27 | 1.94 |
337 | 338 | 6.406512 | GGCCCCGTTTGATAATTCAGTATTTT | 60.407 | 38.462 | 0.00 | 0.00 | 32.27 | 1.82 |
338 | 339 | 5.068591 | GGCCCCGTTTGATAATTCAGTATTT | 59.931 | 40.000 | 0.00 | 0.00 | 32.27 | 1.40 |
339 | 340 | 4.583073 | GGCCCCGTTTGATAATTCAGTATT | 59.417 | 41.667 | 0.00 | 0.00 | 32.27 | 1.89 |
340 | 341 | 4.141251 | AGGCCCCGTTTGATAATTCAGTAT | 60.141 | 41.667 | 0.00 | 0.00 | 32.27 | 2.12 |
341 | 342 | 3.201266 | AGGCCCCGTTTGATAATTCAGTA | 59.799 | 43.478 | 0.00 | 0.00 | 32.27 | 2.74 |
342 | 343 | 2.025321 | AGGCCCCGTTTGATAATTCAGT | 60.025 | 45.455 | 0.00 | 0.00 | 32.27 | 3.41 |
343 | 344 | 2.358898 | CAGGCCCCGTTTGATAATTCAG | 59.641 | 50.000 | 0.00 | 0.00 | 32.27 | 3.02 |
344 | 345 | 2.374184 | CAGGCCCCGTTTGATAATTCA | 58.626 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
345 | 346 | 1.681264 | CCAGGCCCCGTTTGATAATTC | 59.319 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
346 | 347 | 1.687996 | CCCAGGCCCCGTTTGATAATT | 60.688 | 52.381 | 0.00 | 0.00 | 0.00 | 1.40 |
347 | 348 | 0.106217 | CCCAGGCCCCGTTTGATAAT | 60.106 | 55.000 | 0.00 | 0.00 | 0.00 | 1.28 |
348 | 349 | 1.304952 | CCCAGGCCCCGTTTGATAA | 59.695 | 57.895 | 0.00 | 0.00 | 0.00 | 1.75 |
349 | 350 | 1.502527 | AACCCAGGCCCCGTTTGATA | 61.503 | 55.000 | 0.00 | 0.00 | 0.00 | 2.15 |
350 | 351 | 2.852281 | AACCCAGGCCCCGTTTGAT | 61.852 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
351 | 352 | 3.503839 | AACCCAGGCCCCGTTTGA | 61.504 | 61.111 | 0.00 | 0.00 | 0.00 | 2.69 |
352 | 353 | 3.302344 | CAACCCAGGCCCCGTTTG | 61.302 | 66.667 | 0.00 | 0.00 | 0.00 | 2.93 |
353 | 354 | 4.614036 | CCAACCCAGGCCCCGTTT | 62.614 | 66.667 | 0.00 | 0.00 | 0.00 | 3.60 |
357 | 358 | 1.869824 | TATTCACCAACCCAGGCCCC | 61.870 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
358 | 359 | 0.395724 | CTATTCACCAACCCAGGCCC | 60.396 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
359 | 360 | 0.331616 | ACTATTCACCAACCCAGGCC | 59.668 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
360 | 361 | 3.214328 | CATACTATTCACCAACCCAGGC | 58.786 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
361 | 362 | 3.214328 | GCATACTATTCACCAACCCAGG | 58.786 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
365 | 366 | 4.261801 | ACTGTGCATACTATTCACCAACC | 58.738 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
381 | 382 | 3.282831 | ACCAGCGAAAATAAACTGTGC | 57.717 | 42.857 | 0.00 | 0.00 | 0.00 | 4.57 |
385 | 386 | 9.320352 | ACAAAAATAAACCAGCGAAAATAAACT | 57.680 | 25.926 | 0.00 | 0.00 | 0.00 | 2.66 |
404 | 405 | 2.158519 | ACCGTGGGAGGAGAACAAAAAT | 60.159 | 45.455 | 0.00 | 0.00 | 34.73 | 1.82 |
409 | 411 | 1.911766 | GGACCGTGGGAGGAGAACA | 60.912 | 63.158 | 0.00 | 0.00 | 34.73 | 3.18 |
423 | 425 | 3.929723 | TTACGGGGGAGGTGGGACC | 62.930 | 68.421 | 0.00 | 0.00 | 38.99 | 4.46 |
424 | 426 | 2.284847 | TTACGGGGGAGGTGGGAC | 60.285 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
516 | 519 | 2.980233 | GGGGCATCGCTACATGGC | 60.980 | 66.667 | 0.00 | 5.46 | 46.27 | 4.40 |
796 | 814 | 2.043248 | GGCTGGGAGACGTAGGGA | 60.043 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
874 | 892 | 0.040204 | CCCTGGCTCAAGATTTGGGT | 59.960 | 55.000 | 0.00 | 0.00 | 32.32 | 4.51 |
1020 | 1039 | 2.042831 | GCTCGAGGCATGGTGCTTT | 61.043 | 57.895 | 15.58 | 0.00 | 44.28 | 3.51 |
1025 | 1051 | 4.148825 | GGACGCTCGAGGCATGGT | 62.149 | 66.667 | 15.58 | 0.45 | 41.91 | 3.55 |
1029 | 1055 | 2.989253 | TTGAGGACGCTCGAGGCA | 60.989 | 61.111 | 15.58 | 0.00 | 41.91 | 4.75 |
1394 | 1453 | 6.550938 | TCCACATTACTCTGATTCATCTGT | 57.449 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
1410 | 1471 | 3.574614 | GCGTTTTACAAGCATCCACATT | 58.425 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
1453 | 1514 | 3.998341 | ACGGAAAAATAAGAGCAAGCGTA | 59.002 | 39.130 | 0.00 | 0.00 | 0.00 | 4.42 |
1485 | 1546 | 3.366679 | GGTGAAACACTTGGAGATGCATG | 60.367 | 47.826 | 2.46 | 0.00 | 39.98 | 4.06 |
1670 | 1744 | 9.140286 | CTTAATCTATGTTCGAACTCTTGTTGA | 57.860 | 33.333 | 27.32 | 15.56 | 36.39 | 3.18 |
1808 | 1882 | 4.970662 | TCATTGCTAGAAGTCAATTGCC | 57.029 | 40.909 | 0.00 | 0.00 | 31.15 | 4.52 |
1934 | 2008 | 6.923508 | TGTTGTTGTTGTTGTTGTTGTTATCA | 59.076 | 30.769 | 0.00 | 0.00 | 0.00 | 2.15 |
2003 | 2079 | 3.197766 | AGTTGGTTGCGAGATCTTATGGA | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
2166 | 2244 | 2.807895 | GACGGCTAAAGCGTGCGA | 60.808 | 61.111 | 6.19 | 0.00 | 43.26 | 5.10 |
2212 | 2290 | 1.102978 | GGTTTGGGCATATTCAGCGT | 58.897 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
2463 | 2541 | 3.771479 | TCTCTGTGACAATAGAGTGCCAT | 59.229 | 43.478 | 14.36 | 0.00 | 41.24 | 4.40 |
2473 | 2551 | 4.874966 | GCTTCTAGCATTCTCTGTGACAAT | 59.125 | 41.667 | 0.00 | 0.00 | 41.89 | 2.71 |
2519 | 2597 | 5.551760 | GATGTGAACCATCGAATCAAAGT | 57.448 | 39.130 | 0.00 | 0.00 | 40.60 | 2.66 |
2578 | 2656 | 4.760204 | CAGAAGGACACCTTTCGGTATTTT | 59.240 | 41.667 | 4.51 | 0.00 | 44.82 | 1.82 |
2789 | 2867 | 3.370953 | GGAGATATCCCATGGTGTATGCC | 60.371 | 52.174 | 11.73 | 8.26 | 35.37 | 4.40 |
2820 | 2898 | 2.237143 | GTGATGGATGAGGTCACAAGGA | 59.763 | 50.000 | 0.00 | 0.00 | 41.35 | 3.36 |
2898 | 2976 | 3.507622 | TGATGTCGACACTCATGACTTCT | 59.492 | 43.478 | 22.71 | 0.00 | 37.56 | 2.85 |
2907 | 2986 | 2.405357 | CGAACAAGTGATGTCGACACTC | 59.595 | 50.000 | 22.71 | 18.68 | 46.01 | 3.51 |
2969 | 3048 | 7.122948 | ACACAAAGTCCCAACAAAGTACATTAA | 59.877 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3022 | 3101 | 2.426024 | GGCCTATGATAAGATACCGCGA | 59.574 | 50.000 | 8.23 | 0.00 | 0.00 | 5.87 |
3148 | 3227 | 3.241322 | ACGACTTATACACGCGTTAATGC | 59.759 | 43.478 | 10.22 | 9.74 | 0.00 | 3.56 |
3149 | 3228 | 4.731961 | AGACGACTTATACACGCGTTAATG | 59.268 | 41.667 | 10.22 | 0.00 | 35.09 | 1.90 |
3150 | 3229 | 4.913376 | AGACGACTTATACACGCGTTAAT | 58.087 | 39.130 | 10.22 | 8.85 | 35.09 | 1.40 |
3151 | 3230 | 4.340894 | AGACGACTTATACACGCGTTAA | 57.659 | 40.909 | 10.22 | 5.21 | 35.09 | 2.01 |
3152 | 3231 | 4.090729 | CAAGACGACTTATACACGCGTTA | 58.909 | 43.478 | 10.22 | 6.29 | 35.09 | 3.18 |
3153 | 3232 | 2.907910 | AGACGACTTATACACGCGTT | 57.092 | 45.000 | 10.22 | 3.81 | 35.09 | 4.84 |
3154 | 3233 | 2.095567 | ACAAGACGACTTATACACGCGT | 60.096 | 45.455 | 5.58 | 5.58 | 37.97 | 6.01 |
3155 | 3234 | 2.512885 | ACAAGACGACTTATACACGCG | 58.487 | 47.619 | 3.53 | 3.53 | 34.70 | 6.01 |
3156 | 3235 | 3.542704 | CAGACAAGACGACTTATACACGC | 59.457 | 47.826 | 0.00 | 0.00 | 34.70 | 5.34 |
3157 | 3236 | 4.720090 | ACAGACAAGACGACTTATACACG | 58.280 | 43.478 | 0.00 | 0.00 | 34.70 | 4.49 |
3158 | 3237 | 7.201333 | GCTTAACAGACAAGACGACTTATACAC | 60.201 | 40.741 | 0.00 | 0.00 | 34.70 | 2.90 |
3159 | 3238 | 6.805271 | GCTTAACAGACAAGACGACTTATACA | 59.195 | 38.462 | 0.00 | 0.00 | 34.70 | 2.29 |
3160 | 3239 | 6.253083 | GGCTTAACAGACAAGACGACTTATAC | 59.747 | 42.308 | 0.00 | 0.00 | 34.70 | 1.47 |
3161 | 3240 | 6.071784 | TGGCTTAACAGACAAGACGACTTATA | 60.072 | 38.462 | 0.00 | 0.00 | 33.76 | 0.98 |
3162 | 3241 | 5.169295 | GGCTTAACAGACAAGACGACTTAT | 58.831 | 41.667 | 0.00 | 0.00 | 34.70 | 1.73 |
3163 | 3242 | 4.038282 | TGGCTTAACAGACAAGACGACTTA | 59.962 | 41.667 | 0.00 | 0.00 | 33.76 | 2.24 |
3164 | 3243 | 3.181469 | TGGCTTAACAGACAAGACGACTT | 60.181 | 43.478 | 0.00 | 0.00 | 33.76 | 3.01 |
3165 | 3244 | 2.364324 | TGGCTTAACAGACAAGACGACT | 59.636 | 45.455 | 0.00 | 0.00 | 33.76 | 4.18 |
3166 | 3245 | 2.750948 | TGGCTTAACAGACAAGACGAC | 58.249 | 47.619 | 0.00 | 0.00 | 33.76 | 4.34 |
3167 | 3246 | 3.006430 | TCATGGCTTAACAGACAAGACGA | 59.994 | 43.478 | 0.00 | 0.00 | 43.32 | 4.20 |
3168 | 3247 | 3.325870 | TCATGGCTTAACAGACAAGACG | 58.674 | 45.455 | 0.00 | 0.00 | 43.32 | 4.18 |
3169 | 3248 | 6.595716 | AGTTATCATGGCTTAACAGACAAGAC | 59.404 | 38.462 | 13.14 | 0.00 | 43.32 | 3.01 |
3170 | 3249 | 6.711277 | AGTTATCATGGCTTAACAGACAAGA | 58.289 | 36.000 | 13.14 | 0.00 | 43.32 | 3.02 |
3171 | 3250 | 6.037610 | GGAGTTATCATGGCTTAACAGACAAG | 59.962 | 42.308 | 13.14 | 0.00 | 43.32 | 3.16 |
3172 | 3251 | 5.880332 | GGAGTTATCATGGCTTAACAGACAA | 59.120 | 40.000 | 13.14 | 0.00 | 43.32 | 3.18 |
3173 | 3252 | 5.045942 | TGGAGTTATCATGGCTTAACAGACA | 60.046 | 40.000 | 13.14 | 8.09 | 44.64 | 3.41 |
3174 | 3253 | 5.428253 | TGGAGTTATCATGGCTTAACAGAC | 58.572 | 41.667 | 13.14 | 6.44 | 32.03 | 3.51 |
3175 | 3254 | 5.692115 | TGGAGTTATCATGGCTTAACAGA | 57.308 | 39.130 | 13.14 | 0.00 | 32.03 | 3.41 |
3176 | 3255 | 5.824624 | ACATGGAGTTATCATGGCTTAACAG | 59.175 | 40.000 | 0.00 | 4.46 | 44.42 | 3.16 |
3177 | 3256 | 5.754782 | ACATGGAGTTATCATGGCTTAACA | 58.245 | 37.500 | 0.00 | 0.00 | 44.42 | 2.41 |
3178 | 3257 | 7.801716 | TTACATGGAGTTATCATGGCTTAAC | 57.198 | 36.000 | 0.00 | 0.00 | 44.42 | 2.01 |
3179 | 3258 | 8.995027 | ATTTACATGGAGTTATCATGGCTTAA | 57.005 | 30.769 | 0.00 | 0.00 | 44.42 | 1.85 |
3180 | 3259 | 8.439971 | AGATTTACATGGAGTTATCATGGCTTA | 58.560 | 33.333 | 0.00 | 0.00 | 44.42 | 3.09 |
3181 | 3260 | 7.293073 | AGATTTACATGGAGTTATCATGGCTT | 58.707 | 34.615 | 0.00 | 0.00 | 44.42 | 4.35 |
3210 | 3289 | 1.000955 | CGCCTAAACTCTGTCACTGGT | 59.999 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
3229 | 3308 | 8.517862 | GTTAATGCGTTAAAAGGTAAAATAGCG | 58.482 | 33.333 | 12.62 | 0.00 | 31.94 | 4.26 |
3466 | 3547 | 7.064134 | CAGGTACAAAGTACGCAGAAATATGAA | 59.936 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3518 | 5713 | 3.612860 | CCGTGGAGAGTTAATGAAAGACG | 59.387 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
3545 | 5740 | 1.687840 | TATGTACCAGCCGGCCAGT | 60.688 | 57.895 | 26.15 | 23.31 | 34.57 | 4.00 |
3612 | 5807 | 5.681639 | ACAAATATTTAGGAACGGAGGGAG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3613 | 5808 | 5.427481 | AGACAAATATTTAGGAACGGAGGGA | 59.573 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3614 | 5809 | 5.681639 | AGACAAATATTTAGGAACGGAGGG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3615 | 5810 | 7.625828 | AAAGACAAATATTTAGGAACGGAGG | 57.374 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3643 | 5838 | 9.061610 | CGTATGTGGTAGTTCATTTGAAATTTC | 57.938 | 33.333 | 11.41 | 11.41 | 35.58 | 2.17 |
3644 | 5839 | 8.026607 | CCGTATGTGGTAGTTCATTTGAAATTT | 58.973 | 33.333 | 0.00 | 0.00 | 35.58 | 1.82 |
3645 | 5840 | 7.392113 | TCCGTATGTGGTAGTTCATTTGAAATT | 59.608 | 33.333 | 0.00 | 0.00 | 35.58 | 1.82 |
3646 | 5841 | 6.882140 | TCCGTATGTGGTAGTTCATTTGAAAT | 59.118 | 34.615 | 0.00 | 0.00 | 35.58 | 2.17 |
3647 | 5842 | 6.231951 | TCCGTATGTGGTAGTTCATTTGAAA | 58.768 | 36.000 | 0.00 | 0.00 | 35.58 | 2.69 |
3648 | 5843 | 5.795972 | TCCGTATGTGGTAGTTCATTTGAA | 58.204 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
3649 | 5844 | 5.408880 | TCCGTATGTGGTAGTTCATTTGA | 57.591 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
3650 | 5845 | 5.584649 | ACATCCGTATGTGGTAGTTCATTTG | 59.415 | 40.000 | 0.00 | 0.00 | 44.79 | 2.32 |
3651 | 5846 | 5.741011 | ACATCCGTATGTGGTAGTTCATTT | 58.259 | 37.500 | 0.00 | 0.00 | 44.79 | 2.32 |
3652 | 5847 | 5.353394 | ACATCCGTATGTGGTAGTTCATT | 57.647 | 39.130 | 0.00 | 0.00 | 44.79 | 2.57 |
3653 | 5848 | 6.665992 | ATACATCCGTATGTGGTAGTTCAT | 57.334 | 37.500 | 3.56 | 0.00 | 45.99 | 2.57 |
3654 | 5849 | 7.770366 | ATATACATCCGTATGTGGTAGTTCA | 57.230 | 36.000 | 3.56 | 0.00 | 45.99 | 3.18 |
3655 | 5850 | 9.170734 | TCTATATACATCCGTATGTGGTAGTTC | 57.829 | 37.037 | 3.56 | 0.00 | 45.99 | 3.01 |
3656 | 5851 | 8.954350 | GTCTATATACATCCGTATGTGGTAGTT | 58.046 | 37.037 | 3.56 | 0.00 | 45.99 | 2.24 |
3657 | 5852 | 8.105197 | TGTCTATATACATCCGTATGTGGTAGT | 58.895 | 37.037 | 3.56 | 0.00 | 45.99 | 2.73 |
3658 | 5853 | 8.502105 | TGTCTATATACATCCGTATGTGGTAG | 57.498 | 38.462 | 3.56 | 3.93 | 45.99 | 3.18 |
3660 | 5855 | 7.956328 | ATGTCTATATACATCCGTATGTGGT | 57.044 | 36.000 | 3.56 | 0.00 | 45.99 | 4.16 |
3693 | 5888 | 5.446473 | CGGAGCAAAATGAGTGAATCTACAC | 60.446 | 44.000 | 0.00 | 0.00 | 40.60 | 2.90 |
3694 | 5889 | 4.631377 | CGGAGCAAAATGAGTGAATCTACA | 59.369 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3695 | 5890 | 4.631813 | ACGGAGCAAAATGAGTGAATCTAC | 59.368 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
3696 | 5891 | 4.832248 | ACGGAGCAAAATGAGTGAATCTA | 58.168 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
3697 | 5892 | 3.679389 | ACGGAGCAAAATGAGTGAATCT | 58.321 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
3698 | 5893 | 5.065218 | ACATACGGAGCAAAATGAGTGAATC | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3699 | 5894 | 4.943705 | ACATACGGAGCAAAATGAGTGAAT | 59.056 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
3700 | 5895 | 4.323417 | ACATACGGAGCAAAATGAGTGAA | 58.677 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
3701 | 5896 | 3.937814 | ACATACGGAGCAAAATGAGTGA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
3702 | 5897 | 4.870426 | AGTACATACGGAGCAAAATGAGTG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3703 | 5898 | 5.086104 | AGTACATACGGAGCAAAATGAGT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3704 | 5899 | 5.005779 | GTGAGTACATACGGAGCAAAATGAG | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3705 | 5900 | 4.868171 | GTGAGTACATACGGAGCAAAATGA | 59.132 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3706 | 5901 | 4.870426 | AGTGAGTACATACGGAGCAAAATG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
3707 | 5902 | 5.086104 | AGTGAGTACATACGGAGCAAAAT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
3708 | 5903 | 4.530710 | AGTGAGTACATACGGAGCAAAA | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
3709 | 5904 | 4.242475 | CAAGTGAGTACATACGGAGCAAA | 58.758 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
3710 | 5905 | 3.257375 | ACAAGTGAGTACATACGGAGCAA | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
3711 | 5906 | 2.823747 | ACAAGTGAGTACATACGGAGCA | 59.176 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
3712 | 5907 | 3.505464 | ACAAGTGAGTACATACGGAGC | 57.495 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
3713 | 5908 | 5.055642 | TCAACAAGTGAGTACATACGGAG | 57.944 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
3714 | 5909 | 5.456548 | TTCAACAAGTGAGTACATACGGA | 57.543 | 39.130 | 0.00 | 0.00 | 37.61 | 4.69 |
3715 | 5910 | 6.590292 | AGATTTCAACAAGTGAGTACATACGG | 59.410 | 38.462 | 0.00 | 0.00 | 37.61 | 4.02 |
3716 | 5911 | 7.542477 | AGAGATTTCAACAAGTGAGTACATACG | 59.458 | 37.037 | 0.00 | 0.00 | 37.61 | 3.06 |
3717 | 5912 | 8.764524 | AGAGATTTCAACAAGTGAGTACATAC | 57.235 | 34.615 | 0.00 | 0.00 | 37.61 | 2.39 |
3719 | 5914 | 8.807118 | TCTAGAGATTTCAACAAGTGAGTACAT | 58.193 | 33.333 | 0.00 | 0.00 | 37.61 | 2.29 |
3720 | 5915 | 8.178313 | TCTAGAGATTTCAACAAGTGAGTACA | 57.822 | 34.615 | 0.00 | 0.00 | 37.61 | 2.90 |
3721 | 5916 | 9.477484 | TTTCTAGAGATTTCAACAAGTGAGTAC | 57.523 | 33.333 | 0.00 | 0.00 | 37.61 | 2.73 |
3722 | 5917 | 9.698309 | CTTTCTAGAGATTTCAACAAGTGAGTA | 57.302 | 33.333 | 0.00 | 0.00 | 37.61 | 2.59 |
3723 | 5918 | 8.424918 | TCTTTCTAGAGATTTCAACAAGTGAGT | 58.575 | 33.333 | 0.00 | 0.00 | 37.61 | 3.41 |
3724 | 5919 | 8.707839 | GTCTTTCTAGAGATTTCAACAAGTGAG | 58.292 | 37.037 | 0.00 | 0.00 | 37.61 | 3.51 |
3725 | 5920 | 8.204160 | TGTCTTTCTAGAGATTTCAACAAGTGA | 58.796 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3726 | 5921 | 8.370493 | TGTCTTTCTAGAGATTTCAACAAGTG | 57.630 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
3727 | 5922 | 8.964476 | TTGTCTTTCTAGAGATTTCAACAAGT | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
3739 | 5934 | 9.813080 | CGTTCCTAAATTTTTGTCTTTCTAGAG | 57.187 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
3740 | 5935 | 8.780249 | CCGTTCCTAAATTTTTGTCTTTCTAGA | 58.220 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
3741 | 5936 | 8.780249 | TCCGTTCCTAAATTTTTGTCTTTCTAG | 58.220 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
3742 | 5937 | 8.680039 | TCCGTTCCTAAATTTTTGTCTTTCTA | 57.320 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
3743 | 5938 | 7.255486 | CCTCCGTTCCTAAATTTTTGTCTTTCT | 60.255 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
3744 | 5939 | 6.861572 | CCTCCGTTCCTAAATTTTTGTCTTTC | 59.138 | 38.462 | 0.00 | 0.00 | 0.00 | 2.62 |
3745 | 5940 | 6.239204 | CCCTCCGTTCCTAAATTTTTGTCTTT | 60.239 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
3746 | 5941 | 5.243060 | CCCTCCGTTCCTAAATTTTTGTCTT | 59.757 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3747 | 5942 | 4.765339 | CCCTCCGTTCCTAAATTTTTGTCT | 59.235 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
3748 | 5943 | 4.763279 | TCCCTCCGTTCCTAAATTTTTGTC | 59.237 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3749 | 5944 | 4.732065 | TCCCTCCGTTCCTAAATTTTTGT | 58.268 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
3750 | 5945 | 4.765339 | ACTCCCTCCGTTCCTAAATTTTTG | 59.235 | 41.667 | 0.00 | 0.00 | 0.00 | 2.44 |
3751 | 5946 | 4.994282 | ACTCCCTCCGTTCCTAAATTTTT | 58.006 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
3752 | 5947 | 4.652679 | ACTCCCTCCGTTCCTAAATTTT | 57.347 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
3753 | 5948 | 5.427481 | TCATACTCCCTCCGTTCCTAAATTT | 59.573 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3754 | 5949 | 4.966805 | TCATACTCCCTCCGTTCCTAAATT | 59.033 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
3755 | 5950 | 4.553678 | TCATACTCCCTCCGTTCCTAAAT | 58.446 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
3756 | 5951 | 3.985127 | TCATACTCCCTCCGTTCCTAAA | 58.015 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
3757 | 5952 | 3.675348 | TCATACTCCCTCCGTTCCTAA | 57.325 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
3758 | 5953 | 3.897657 | ATCATACTCCCTCCGTTCCTA | 57.102 | 47.619 | 0.00 | 0.00 | 0.00 | 2.94 |
3759 | 5954 | 2.777459 | ATCATACTCCCTCCGTTCCT | 57.223 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3760 | 5955 | 5.238583 | CAATTATCATACTCCCTCCGTTCC | 58.761 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
3761 | 5956 | 5.011738 | TCCAATTATCATACTCCCTCCGTTC | 59.988 | 44.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3762 | 5957 | 4.905456 | TCCAATTATCATACTCCCTCCGTT | 59.095 | 41.667 | 0.00 | 0.00 | 0.00 | 4.44 |
3763 | 5958 | 4.489737 | TCCAATTATCATACTCCCTCCGT | 58.510 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
3764 | 5959 | 4.528596 | ACTCCAATTATCATACTCCCTCCG | 59.471 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
3765 | 5960 | 7.741554 | ATACTCCAATTATCATACTCCCTCC | 57.258 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3791 | 5986 | 5.579753 | ATGAGGCTGTAATTGGAGATGAT | 57.420 | 39.130 | 0.00 | 0.00 | 0.00 | 2.45 |
3897 | 9384 | 5.428457 | TCCTCACCCATTCTGTTATACATGT | 59.572 | 40.000 | 2.69 | 2.69 | 0.00 | 3.21 |
3899 | 9386 | 5.667626 | ACTCCTCACCCATTCTGTTATACAT | 59.332 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4095 | 9582 | 8.954950 | ATCTGTTTGGTAGTCTTATTGATGAG | 57.045 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
4099 | 9586 | 7.824289 | CCTCAATCTGTTTGGTAGTCTTATTGA | 59.176 | 37.037 | 0.00 | 0.00 | 35.92 | 2.57 |
4203 | 9690 | 8.522830 | TCAGAACTAAAATTTTCTTGGCTATGG | 58.477 | 33.333 | 6.72 | 0.00 | 29.23 | 2.74 |
4288 | 9777 | 4.576216 | TTGGAAGCAAGCGTGAATAAAA | 57.424 | 36.364 | 2.99 | 0.00 | 0.00 | 1.52 |
4600 | 10090 | 2.209315 | GGCAAAGCTTGGGCCTCAA | 61.209 | 57.895 | 26.91 | 4.44 | 44.32 | 3.02 |
4751 | 10241 | 9.010029 | TCCAAACTACCTTATCAAAGATGAAAC | 57.990 | 33.333 | 0.00 | 0.00 | 39.49 | 2.78 |
4796 | 10286 | 2.089201 | CCGAAATAAGGAAAAGGCCGT | 58.911 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
4799 | 10289 | 4.776795 | TTCACCGAAATAAGGAAAAGGC | 57.223 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
5034 | 10524 | 9.753674 | TCTATCCCATTGAATACCAATTATTCC | 57.246 | 33.333 | 2.38 | 0.00 | 43.98 | 3.01 |
5064 | 10554 | 4.225942 | TCACATGGCTAATCTTGACTTCCT | 59.774 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
5154 | 10644 | 7.230914 | ACGACAAATTAAGCAACAACAAAAAC | 58.769 | 30.769 | 0.00 | 0.00 | 0.00 | 2.43 |
5258 | 10748 | 4.718774 | ACAGTACATCATCCATCTGACCTT | 59.281 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
5260 | 10750 | 4.679373 | ACAGTACATCATCCATCTGACC | 57.321 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
5348 | 10838 | 5.749596 | AAAAGTTAAAGTTTTGCCATGGC | 57.250 | 34.783 | 30.54 | 30.54 | 42.35 | 4.40 |
5349 | 10839 | 7.802720 | GCAATAAAAGTTAAAGTTTTGCCATGG | 59.197 | 33.333 | 7.63 | 7.63 | 33.25 | 3.66 |
5350 | 10840 | 7.802720 | GGCAATAAAAGTTAAAGTTTTGCCATG | 59.197 | 33.333 | 16.16 | 0.00 | 39.74 | 3.66 |
5351 | 10841 | 7.500559 | TGGCAATAAAAGTTAAAGTTTTGCCAT | 59.499 | 29.630 | 18.96 | 0.00 | 42.44 | 4.40 |
5352 | 10842 | 6.823689 | TGGCAATAAAAGTTAAAGTTTTGCCA | 59.176 | 30.769 | 18.96 | 18.96 | 43.83 | 4.92 |
5353 | 10843 | 7.252965 | TGGCAATAAAAGTTAAAGTTTTGCC | 57.747 | 32.000 | 14.64 | 14.64 | 40.10 | 4.52 |
5354 | 10844 | 7.802720 | CCATGGCAATAAAAGTTAAAGTTTTGC | 59.197 | 33.333 | 0.00 | 0.00 | 33.25 | 3.68 |
5355 | 10845 | 7.802720 | GCCATGGCAATAAAAGTTAAAGTTTTG | 59.197 | 33.333 | 32.08 | 0.00 | 41.49 | 2.44 |
5356 | 10846 | 7.870826 | GCCATGGCAATAAAAGTTAAAGTTTT | 58.129 | 30.769 | 32.08 | 0.00 | 41.49 | 2.43 |
5357 | 10847 | 7.433708 | GCCATGGCAATAAAAGTTAAAGTTT | 57.566 | 32.000 | 32.08 | 0.00 | 41.49 | 2.66 |
5374 | 10864 | 6.149142 | TGAATGAAATAAAGTTTTGCCATGGC | 59.851 | 34.615 | 30.54 | 30.54 | 42.35 | 4.40 |
5375 | 10865 | 7.670009 | TGAATGAAATAAAGTTTTGCCATGG | 57.330 | 32.000 | 7.63 | 7.63 | 0.00 | 3.66 |
5376 | 10866 | 7.747357 | GCTTGAATGAAATAAAGTTTTGCCATG | 59.253 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
5377 | 10867 | 7.444792 | TGCTTGAATGAAATAAAGTTTTGCCAT | 59.555 | 29.630 | 0.00 | 0.00 | 0.00 | 4.40 |
5378 | 10868 | 6.765036 | TGCTTGAATGAAATAAAGTTTTGCCA | 59.235 | 30.769 | 0.00 | 0.00 | 0.00 | 4.92 |
5379 | 10869 | 7.188468 | TGCTTGAATGAAATAAAGTTTTGCC | 57.812 | 32.000 | 0.00 | 0.00 | 0.00 | 4.52 |
5380 | 10870 | 7.747357 | CCATGCTTGAATGAAATAAAGTTTTGC | 59.253 | 33.333 | 0.22 | 0.00 | 0.00 | 3.68 |
5381 | 10871 | 7.747357 | GCCATGCTTGAATGAAATAAAGTTTTG | 59.253 | 33.333 | 0.22 | 0.00 | 0.00 | 2.44 |
5382 | 10872 | 7.444792 | TGCCATGCTTGAATGAAATAAAGTTTT | 59.555 | 29.630 | 0.22 | 0.00 | 0.00 | 2.43 |
5383 | 10873 | 6.935771 | TGCCATGCTTGAATGAAATAAAGTTT | 59.064 | 30.769 | 0.22 | 0.00 | 0.00 | 2.66 |
5384 | 10874 | 6.465948 | TGCCATGCTTGAATGAAATAAAGTT | 58.534 | 32.000 | 0.22 | 0.00 | 0.00 | 2.66 |
5385 | 10875 | 6.040209 | TGCCATGCTTGAATGAAATAAAGT | 57.960 | 33.333 | 0.22 | 0.00 | 0.00 | 2.66 |
5386 | 10876 | 6.592607 | AGTTGCCATGCTTGAATGAAATAAAG | 59.407 | 34.615 | 0.22 | 0.00 | 0.00 | 1.85 |
5387 | 10877 | 6.465948 | AGTTGCCATGCTTGAATGAAATAAA | 58.534 | 32.000 | 0.22 | 0.00 | 0.00 | 1.40 |
5388 | 10878 | 6.040209 | AGTTGCCATGCTTGAATGAAATAA | 57.960 | 33.333 | 0.22 | 0.00 | 0.00 | 1.40 |
5389 | 10879 | 5.419788 | AGAGTTGCCATGCTTGAATGAAATA | 59.580 | 36.000 | 0.22 | 0.00 | 0.00 | 1.40 |
5390 | 10880 | 4.222145 | AGAGTTGCCATGCTTGAATGAAAT | 59.778 | 37.500 | 0.22 | 0.00 | 0.00 | 2.17 |
5391 | 10881 | 3.575256 | AGAGTTGCCATGCTTGAATGAAA | 59.425 | 39.130 | 0.22 | 0.00 | 0.00 | 2.69 |
5392 | 10882 | 3.159472 | AGAGTTGCCATGCTTGAATGAA | 58.841 | 40.909 | 0.22 | 0.00 | 0.00 | 2.57 |
5393 | 10883 | 2.799017 | AGAGTTGCCATGCTTGAATGA | 58.201 | 42.857 | 0.22 | 0.00 | 0.00 | 2.57 |
5394 | 10884 | 3.587797 | AAGAGTTGCCATGCTTGAATG | 57.412 | 42.857 | 0.22 | 0.00 | 0.00 | 2.67 |
5395 | 10885 | 3.306502 | CCAAAGAGTTGCCATGCTTGAAT | 60.307 | 43.478 | 0.22 | 0.00 | 33.01 | 2.57 |
5396 | 10886 | 2.036217 | CCAAAGAGTTGCCATGCTTGAA | 59.964 | 45.455 | 0.22 | 0.00 | 33.01 | 2.69 |
5397 | 10887 | 1.614903 | CCAAAGAGTTGCCATGCTTGA | 59.385 | 47.619 | 0.22 | 0.00 | 33.01 | 3.02 |
5398 | 10888 | 1.342174 | ACCAAAGAGTTGCCATGCTTG | 59.658 | 47.619 | 0.00 | 0.00 | 33.01 | 4.01 |
5399 | 10889 | 1.615392 | GACCAAAGAGTTGCCATGCTT | 59.385 | 47.619 | 0.00 | 0.00 | 33.01 | 3.91 |
5400 | 10890 | 1.251251 | GACCAAAGAGTTGCCATGCT | 58.749 | 50.000 | 0.00 | 0.00 | 33.01 | 3.79 |
5401 | 10891 | 0.109597 | CGACCAAAGAGTTGCCATGC | 60.110 | 55.000 | 0.00 | 0.00 | 33.01 | 4.06 |
5402 | 10892 | 1.069022 | CACGACCAAAGAGTTGCCATG | 60.069 | 52.381 | 0.00 | 0.00 | 33.01 | 3.66 |
5403 | 10893 | 1.238439 | CACGACCAAAGAGTTGCCAT | 58.762 | 50.000 | 0.00 | 0.00 | 33.01 | 4.40 |
5404 | 10894 | 0.107410 | ACACGACCAAAGAGTTGCCA | 60.107 | 50.000 | 0.00 | 0.00 | 33.01 | 4.92 |
5405 | 10895 | 1.798813 | CTACACGACCAAAGAGTTGCC | 59.201 | 52.381 | 0.00 | 0.00 | 33.01 | 4.52 |
5406 | 10896 | 2.480845 | ACTACACGACCAAAGAGTTGC | 58.519 | 47.619 | 0.00 | 0.00 | 33.01 | 4.17 |
5407 | 10897 | 4.625742 | CCATACTACACGACCAAAGAGTTG | 59.374 | 45.833 | 0.00 | 0.00 | 34.25 | 3.16 |
5408 | 10898 | 4.525487 | TCCATACTACACGACCAAAGAGTT | 59.475 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
5409 | 10899 | 4.084287 | TCCATACTACACGACCAAAGAGT | 58.916 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
5410 | 10900 | 4.713824 | TCCATACTACACGACCAAAGAG | 57.286 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
5411 | 10901 | 5.670792 | AATCCATACTACACGACCAAAGA | 57.329 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
5412 | 10902 | 5.293569 | GGAAATCCATACTACACGACCAAAG | 59.706 | 44.000 | 0.00 | 0.00 | 35.64 | 2.77 |
5413 | 10903 | 5.046159 | AGGAAATCCATACTACACGACCAAA | 60.046 | 40.000 | 1.67 | 0.00 | 38.89 | 3.28 |
5414 | 10904 | 4.468510 | AGGAAATCCATACTACACGACCAA | 59.531 | 41.667 | 1.67 | 0.00 | 38.89 | 3.67 |
5415 | 10905 | 4.028131 | AGGAAATCCATACTACACGACCA | 58.972 | 43.478 | 1.67 | 0.00 | 38.89 | 4.02 |
5416 | 10906 | 4.667519 | AGGAAATCCATACTACACGACC | 57.332 | 45.455 | 1.67 | 0.00 | 38.89 | 4.79 |
5417 | 10907 | 6.262720 | ACTCTAGGAAATCCATACTACACGAC | 59.737 | 42.308 | 1.67 | 0.00 | 38.89 | 4.34 |
5418 | 10908 | 6.363065 | ACTCTAGGAAATCCATACTACACGA | 58.637 | 40.000 | 1.67 | 0.00 | 38.89 | 4.35 |
5419 | 10909 | 6.636562 | ACTCTAGGAAATCCATACTACACG | 57.363 | 41.667 | 1.67 | 0.00 | 38.89 | 4.49 |
5460 | 10950 | 5.334337 | CGATGAGAGTGCAAGTGATGAAAAA | 60.334 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
5461 | 10951 | 4.152938 | CGATGAGAGTGCAAGTGATGAAAA | 59.847 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
5462 | 10952 | 3.681417 | CGATGAGAGTGCAAGTGATGAAA | 59.319 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
5467 | 10957 | 1.341209 | ACACGATGAGAGTGCAAGTGA | 59.659 | 47.619 | 0.00 | 0.00 | 42.94 | 3.41 |
5482 | 10972 | 1.135888 | CGATGTCTACGGTGAACACGA | 60.136 | 52.381 | 0.00 | 0.00 | 34.93 | 4.35 |
5483 | 10973 | 1.256652 | CGATGTCTACGGTGAACACG | 58.743 | 55.000 | 0.00 | 0.00 | 37.36 | 4.49 |
5492 | 10982 | 1.452025 | CCATTAAGCGCGATGTCTACG | 59.548 | 52.381 | 12.10 | 0.00 | 0.00 | 3.51 |
5503 | 10993 | 0.098552 | TGCGCAATCACCATTAAGCG | 59.901 | 50.000 | 8.16 | 0.00 | 46.99 | 4.68 |
5553 | 11047 | 5.558818 | GATGAAGCTATCCATGACAGGATT | 58.441 | 41.667 | 10.49 | 0.00 | 46.12 | 3.01 |
5578 | 11072 | 3.073650 | GGTATGGGAGCTGGAATTGATCT | 59.926 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
5665 | 11159 | 1.142870 | ACCAAGCCTTGTTAGACAGCA | 59.857 | 47.619 | 3.37 | 0.00 | 0.00 | 4.41 |
5756 | 11250 | 5.734855 | TGAACCAATCGCTCTTAATTAGC | 57.265 | 39.130 | 0.85 | 0.85 | 36.60 | 3.09 |
5830 | 11324 | 4.933064 | CGACGGCCGAGATGAGCC | 62.933 | 72.222 | 35.90 | 8.64 | 46.17 | 4.70 |
5843 | 11337 | 1.262150 | CGTGATTAACGCGTCGACG | 59.738 | 57.895 | 32.57 | 32.57 | 46.99 | 5.12 |
5856 | 11350 | 3.082548 | CCGTCCCATCTAGATACGTGAT | 58.917 | 50.000 | 19.84 | 0.00 | 31.87 | 3.06 |
5862 | 11356 | 3.422796 | GAAGCTCCGTCCCATCTAGATA | 58.577 | 50.000 | 4.54 | 0.00 | 0.00 | 1.98 |
5869 | 11363 | 3.470888 | CCCGAAGCTCCGTCCCAT | 61.471 | 66.667 | 0.00 | 0.00 | 0.00 | 4.00 |
5871 | 11365 | 3.839432 | CTCCCGAAGCTCCGTCCC | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 4.46 |
5875 | 11369 | 1.595993 | TTCACTCTCCCGAAGCTCCG | 61.596 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
5886 | 11380 | 2.224079 | TGAACGCAGCAATTTCACTCTC | 59.776 | 45.455 | 0.00 | 0.00 | 0.00 | 3.20 |
5891 | 11385 | 3.367992 | AACATGAACGCAGCAATTTCA | 57.632 | 38.095 | 0.00 | 4.07 | 33.89 | 2.69 |
5903 | 11397 | 0.755686 | TGGGGCCACAAAACATGAAC | 59.244 | 50.000 | 4.31 | 0.00 | 0.00 | 3.18 |
5920 | 11414 | 1.901591 | AGAGCACACCACTTTCATGG | 58.098 | 50.000 | 0.00 | 0.00 | 46.10 | 3.66 |
6012 | 11506 | 3.681593 | TCCGCTTATAATAACCCATGGC | 58.318 | 45.455 | 6.09 | 0.00 | 0.00 | 4.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.