Multiple sequence alignment - TraesCS3A01G346700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G346700 chr3A 100.000 6221 0 0 847 7067 595967000 595960780 0.000000e+00 11489.0
1 TraesCS3A01G346700 chr3A 100.000 467 0 0 1 467 595967846 595967380 0.000000e+00 863.0
2 TraesCS3A01G346700 chr3A 88.183 567 43 13 6485 7041 202596315 202596867 0.000000e+00 654.0
3 TraesCS3A01G346700 chr3D 91.678 2848 126 43 3691 6487 454152875 454150088 0.000000e+00 3843.0
4 TraesCS3A01G346700 chr3D 92.226 1042 47 15 850 1888 454155652 454154642 0.000000e+00 1445.0
5 TraesCS3A01G346700 chr3D 87.331 592 43 18 6485 7067 167383459 167382891 0.000000e+00 649.0
6 TraesCS3A01G346700 chr3D 87.597 516 48 7 2557 3070 454153914 454153413 1.020000e-162 584.0
7 TraesCS3A01G346700 chr3D 88.030 401 22 11 56 449 454156082 454155701 1.080000e-122 451.0
8 TraesCS3A01G346700 chr3D 89.809 157 16 0 2339 2495 454154187 454154031 1.200000e-47 202.0
9 TraesCS3A01G346700 chr3B 91.504 2719 128 40 3691 6360 596601356 596598692 0.000000e+00 3646.0
10 TraesCS3A01G346700 chr3B 91.051 1028 47 17 850 1867 596604307 596603315 0.000000e+00 1347.0
11 TraesCS3A01G346700 chr3B 88.142 565 51 10 6485 7041 242671106 242670550 0.000000e+00 658.0
12 TraesCS3A01G346700 chr3B 85.822 529 59 7 2547 3074 596602719 596602206 1.340000e-151 547.0
13 TraesCS3A01G346700 chr3B 90.935 353 17 5 128 465 596604697 596604345 1.800000e-125 460.0
14 TraesCS3A01G346700 chr3B 89.076 238 20 4 2105 2338 596603254 596603019 2.490000e-74 291.0
15 TraesCS3A01G346700 chr3B 89.151 212 20 2 3081 3289 596601906 596601695 1.960000e-65 261.0
16 TraesCS3A01G346700 chr3B 86.452 155 21 0 2341 2495 596602978 596602824 3.390000e-38 171.0
17 TraesCS3A01G346700 chr3B 91.150 113 6 1 17 129 596622837 596622729 4.420000e-32 150.0
18 TraesCS3A01G346700 chr3B 86.486 111 12 3 6346 6453 596595673 596595563 1.250000e-22 119.0
19 TraesCS3A01G346700 chr3B 95.000 40 2 0 2027 2066 596603316 596603277 5.920000e-06 63.9
20 TraesCS3A01G346700 chr7B 89.638 608 31 15 6482 7067 526809348 526808751 0.000000e+00 745.0
21 TraesCS3A01G346700 chr7B 94.500 200 8 3 3283 3480 701287581 701287383 8.910000e-79 305.0
22 TraesCS3A01G346700 chr5D 84.577 603 69 19 6485 7067 531419684 531420282 1.710000e-160 577.0
23 TraesCS3A01G346700 chr5D 93.333 195 9 3 3284 3477 331322367 331322558 1.160000e-72 285.0
24 TraesCS3A01G346700 chr2D 84.500 600 71 15 6485 7067 11790961 11790367 2.210000e-159 573.0
25 TraesCS3A01G346700 chr6B 93.953 215 10 3 3272 3484 716899292 716899505 8.840000e-84 322.0
26 TraesCS3A01G346700 chr6B 82.692 312 35 12 6734 7033 76199063 76199367 7.030000e-65 259.0
27 TraesCS3A01G346700 chr6B 80.583 103 20 0 1083 1185 565705935 565705833 5.880000e-11 80.5
28 TraesCS3A01G346700 chr1A 95.477 199 6 3 3284 3480 556824261 556824458 1.480000e-81 315.0
29 TraesCS3A01G346700 chr1B 94.975 199 8 2 3284 3481 67529895 67529698 1.910000e-80 311.0
30 TraesCS3A01G346700 chr1B 93.564 202 10 3 3281 3481 484328755 484328556 1.490000e-76 298.0
31 TraesCS3A01G346700 chr1B 93.909 197 7 4 3284 3479 604640244 604640436 6.930000e-75 292.0
32 TraesCS3A01G346700 chr1B 81.132 318 46 12 6726 7037 562364307 562364616 7.080000e-60 243.0
33 TraesCS3A01G346700 chr1D 93.970 199 9 2 3284 3481 100824148 100823952 1.490000e-76 298.0
34 TraesCS3A01G346700 chr4B 90.686 204 14 4 3279 3481 581523392 581523591 4.200000e-67 267.0
35 TraesCS3A01G346700 chr7D 80.805 323 38 15 6726 7033 214107149 214107462 1.530000e-56 231.0
36 TraesCS3A01G346700 chr5B 80.833 120 17 5 1894 2013 522945678 522945791 9.760000e-14 89.8
37 TraesCS3A01G346700 chr6A 81.553 103 19 0 1083 1185 520588457 520588355 1.260000e-12 86.1
38 TraesCS3A01G346700 chr2A 82.524 103 13 3 1893 1992 691534651 691534551 1.260000e-12 86.1
39 TraesCS3A01G346700 chr6D 78.899 109 23 0 1065 1173 380429829 380429937 2.730000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G346700 chr3A 595960780 595967846 7066 True 6176.000000 11489 100.000000 1 7067 2 chr3A.!!$R1 7066
1 TraesCS3A01G346700 chr3A 202596315 202596867 552 False 654.000000 654 88.183000 6485 7041 1 chr3A.!!$F1 556
2 TraesCS3A01G346700 chr3D 454150088 454156082 5994 True 1305.000000 3843 89.868000 56 6487 5 chr3D.!!$R2 6431
3 TraesCS3A01G346700 chr3D 167382891 167383459 568 True 649.000000 649 87.331000 6485 7067 1 chr3D.!!$R1 582
4 TraesCS3A01G346700 chr3B 596595563 596604697 9134 True 767.322222 3646 89.497444 128 6453 9 chr3B.!!$R3 6325
5 TraesCS3A01G346700 chr3B 242670550 242671106 556 True 658.000000 658 88.142000 6485 7041 1 chr3B.!!$R1 556
6 TraesCS3A01G346700 chr7B 526808751 526809348 597 True 745.000000 745 89.638000 6482 7067 1 chr7B.!!$R1 585
7 TraesCS3A01G346700 chr5D 531419684 531420282 598 False 577.000000 577 84.577000 6485 7067 1 chr5D.!!$F2 582
8 TraesCS3A01G346700 chr2D 11790367 11790961 594 True 573.000000 573 84.500000 6485 7067 1 chr2D.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 386 0.236187 TCATCGCCAAAAACGAACCG 59.764 50.000 0.00 0.0 43.71 4.44 F
1882 1928 0.259356 CTAGGACTCCCTCCGTTCCT 59.741 60.000 0.00 0.0 45.10 3.36 F
3449 3949 0.038251 GTTTTAGCAGCACTTGGCCC 60.038 55.000 0.00 0.0 46.50 5.80 F
3650 4297 0.033796 ACGGACGGAGGGAGTATCAA 60.034 55.000 0.00 0.0 36.25 2.57 F
3694 4371 0.181114 TCTGCAGGTCACTTGCACTT 59.819 50.000 11.17 0.0 34.61 3.16 F
3695 4372 0.309922 CTGCAGGTCACTTGCACTTG 59.690 55.000 11.17 0.0 34.61 3.16 F
3733 4410 0.380378 ACTGCACGCGAAACACATTT 59.620 45.000 15.93 0.0 0.00 2.32 F
5172 5882 1.069765 CACTGTCTTCACCGGCACT 59.930 57.895 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2280 2387 0.036483 TATGCAAGTTCGCTCTGCCA 60.036 50.000 0.00 0.00 33.44 4.92 R
3631 4278 0.033796 TTGATACTCCCTCCGTCCGT 60.034 55.000 0.00 0.00 0.00 4.69 R
5151 5861 0.317160 TGCCGGTGAAGACAGTGTAG 59.683 55.000 1.90 0.00 0.00 2.74 R
5394 6104 0.388520 TCATGTCCGACGTCTTGCTG 60.389 55.000 14.70 4.97 0.00 4.41 R
5735 6445 4.916293 GGATGGCGATGGCGAGCA 62.916 66.667 2.10 0.00 41.24 4.26 R
5873 6583 4.080243 TCGGATTAGGCCAGGAAATGTTAA 60.080 41.667 5.01 0.00 0.00 2.01 R
5878 6604 1.843851 TGTCGGATTAGGCCAGGAAAT 59.156 47.619 5.01 0.00 0.00 2.17 R
6672 10467 0.250467 ATGCAAGAGCCACGAACTGT 60.250 50.000 0.00 0.00 41.13 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.537135 AGATTGAAACTCGGACTAGCAA 57.463 40.909 0.00 0.00 0.00 3.91
22 23 4.499183 AGATTGAAACTCGGACTAGCAAG 58.501 43.478 0.00 0.00 0.00 4.01
23 24 3.746045 TTGAAACTCGGACTAGCAAGT 57.254 42.857 0.00 0.00 39.21 3.16
38 39 6.587273 ACTAGCAAGTCTAGAATTTGATCCC 58.413 40.000 17.88 4.73 46.12 3.85
39 40 5.441718 AGCAAGTCTAGAATTTGATCCCA 57.558 39.130 17.88 0.00 0.00 4.37
40 41 5.819991 AGCAAGTCTAGAATTTGATCCCAA 58.180 37.500 17.88 0.00 0.00 4.12
41 42 5.649831 AGCAAGTCTAGAATTTGATCCCAAC 59.350 40.000 17.88 3.40 30.88 3.77
42 43 5.649831 GCAAGTCTAGAATTTGATCCCAACT 59.350 40.000 17.88 0.00 30.88 3.16
43 44 6.151817 GCAAGTCTAGAATTTGATCCCAACTT 59.848 38.462 17.88 1.70 30.88 2.66
44 45 7.627300 GCAAGTCTAGAATTTGATCCCAACTTC 60.627 40.741 17.88 0.00 40.28 3.01
45 46 7.264294 AGTCTAGAATTTGATCCCAACTTCT 57.736 36.000 12.90 12.90 46.86 2.85
46 47 7.694093 AGTCTAGAATTTGATCCCAACTTCTT 58.306 34.615 13.35 2.72 44.64 2.52
47 48 7.826744 AGTCTAGAATTTGATCCCAACTTCTTC 59.173 37.037 13.35 7.39 44.64 2.87
48 49 7.826744 GTCTAGAATTTGATCCCAACTTCTTCT 59.173 37.037 13.35 6.47 44.64 2.85
49 50 8.386264 TCTAGAATTTGATCCCAACTTCTTCTT 58.614 33.333 13.35 0.00 44.64 2.52
50 51 7.846101 AGAATTTGATCCCAACTTCTTCTTT 57.154 32.000 0.00 0.00 44.64 2.52
51 52 7.890515 AGAATTTGATCCCAACTTCTTCTTTC 58.109 34.615 0.00 0.00 44.64 2.62
52 53 7.727634 AGAATTTGATCCCAACTTCTTCTTTCT 59.272 33.333 0.00 0.00 44.64 2.52
53 54 8.940397 AATTTGATCCCAACTTCTTCTTTCTA 57.060 30.769 0.00 0.00 30.88 2.10
54 55 7.986085 TTTGATCCCAACTTCTTCTTTCTAG 57.014 36.000 0.00 0.00 30.88 2.43
55 56 6.688073 TGATCCCAACTTCTTCTTTCTAGT 57.312 37.500 0.00 0.00 0.00 2.57
56 57 7.792364 TGATCCCAACTTCTTCTTTCTAGTA 57.208 36.000 0.00 0.00 0.00 1.82
57 58 7.841956 TGATCCCAACTTCTTCTTTCTAGTAG 58.158 38.462 0.00 0.00 0.00 2.57
58 59 7.674348 TGATCCCAACTTCTTCTTTCTAGTAGA 59.326 37.037 0.00 0.00 0.00 2.59
59 60 7.850935 TCCCAACTTCTTCTTTCTAGTAGAA 57.149 36.000 8.59 8.59 36.00 2.10
60 61 8.258850 TCCCAACTTCTTCTTTCTAGTAGAAA 57.741 34.615 21.30 21.30 41.51 2.52
61 62 8.711170 TCCCAACTTCTTCTTTCTAGTAGAAAA 58.289 33.333 22.47 10.78 42.95 2.29
62 63 9.338622 CCCAACTTCTTCTTTCTAGTAGAAAAA 57.661 33.333 22.47 17.71 42.95 1.94
106 107 1.742900 CTCATCGTACGTGCAAGGCG 61.743 60.000 16.05 8.44 0.00 5.52
109 110 2.495366 ATCGTACGTGCAAGGCGGAA 62.495 55.000 16.05 0.00 0.00 4.30
112 113 0.928229 GTACGTGCAAGGCGGAATAG 59.072 55.000 4.26 0.00 0.00 1.73
121 122 1.227674 GGCGGAATAGGAGCCTGTG 60.228 63.158 0.00 0.00 46.83 3.66
141 142 3.611113 GTGCACATTTGAAGCTGCATTAG 59.389 43.478 13.17 0.00 41.49 1.73
152 153 2.825086 CTGCATTAGCCAAACCGTAC 57.175 50.000 0.00 0.00 41.13 3.67
278 287 3.365465 CGTCATGACTCACGATCTATCCC 60.365 52.174 22.95 0.00 38.32 3.85
305 314 5.015733 GCTGTTCGTTAATGAAACAGATCG 58.984 41.667 26.76 13.26 38.03 3.69
308 317 6.761117 TGTTCGTTAATGAAACAGATCGATG 58.239 36.000 11.66 0.00 38.03 3.84
310 319 7.542824 TGTTCGTTAATGAAACAGATCGATGTA 59.457 33.333 11.66 0.00 38.03 2.29
311 320 7.679659 TCGTTAATGAAACAGATCGATGTAG 57.320 36.000 0.54 0.00 38.03 2.74
343 359 1.443802 GCTGCTAACCAGGTTCAGTC 58.556 55.000 18.10 9.82 42.03 3.51
345 361 1.347707 CTGCTAACCAGGTTCAGTCCA 59.652 52.381 8.57 0.00 37.93 4.02
370 386 0.236187 TCATCGCCAAAAACGAACCG 59.764 50.000 0.00 0.00 43.71 4.44
417 433 3.465403 CCCCTGTCCAGCCTCTCG 61.465 72.222 0.00 0.00 0.00 4.04
432 448 3.119291 CCTCTCGAACTCCAATCATTCG 58.881 50.000 0.00 0.00 45.07 3.34
443 459 2.257409 AATCATTCGCCCTCGCCTGT 62.257 55.000 0.00 0.00 35.26 4.00
465 481 0.510790 CGTTGTATGCACTCACGCAA 59.489 50.000 0.00 0.00 46.87 4.85
870 886 2.125673 CCGTAGTCAAGCCCACCG 60.126 66.667 0.00 0.00 0.00 4.94
872 888 2.345991 GTAGTCAAGCCCACCGCA 59.654 61.111 0.00 0.00 41.38 5.69
873 889 1.078426 GTAGTCAAGCCCACCGCAT 60.078 57.895 0.00 0.00 41.38 4.73
893 909 6.710744 CCGCATCAGGGTATAAGAGTAATTTT 59.289 38.462 0.00 0.00 0.00 1.82
1014 1033 3.345028 AGCATGGGCAAGGGAGCT 61.345 61.111 0.00 0.00 44.61 4.09
1131 1150 4.935495 ATCATCGGCGCCGGCATT 62.935 61.111 44.95 26.34 42.47 3.56
1383 1402 5.941058 CGTCTACCTCATCATCATAGGTACT 59.059 44.000 0.00 0.00 41.86 2.73
1384 1403 6.128145 CGTCTACCTCATCATCATAGGTACTG 60.128 46.154 0.00 0.00 41.86 2.74
1385 1404 6.717540 GTCTACCTCATCATCATAGGTACTGT 59.282 42.308 0.00 0.00 41.86 3.55
1386 1405 7.883833 GTCTACCTCATCATCATAGGTACTGTA 59.116 40.741 0.00 0.00 41.86 2.74
1387 1406 6.902771 ACCTCATCATCATAGGTACTGTAC 57.097 41.667 9.46 9.46 41.86 2.90
1419 1438 1.153249 TCCGATTGGCATTCCCGAC 60.153 57.895 3.96 0.00 35.87 4.79
1630 1649 0.319211 TCGGTGAGTTCGCGTTCAAT 60.319 50.000 5.77 0.00 0.00 2.57
1636 1655 3.599514 GTGAGTTCGCGTTCAATTCAATG 59.400 43.478 5.77 0.00 0.00 2.82
1637 1656 2.584791 AGTTCGCGTTCAATTCAATGC 58.415 42.857 5.77 0.00 35.29 3.56
1638 1657 2.031245 AGTTCGCGTTCAATTCAATGCA 60.031 40.909 5.77 0.00 38.06 3.96
1640 1659 1.535028 TCGCGTTCAATTCAATGCACT 59.465 42.857 5.77 0.00 38.06 4.40
1641 1660 1.645265 CGCGTTCAATTCAATGCACTG 59.355 47.619 7.07 0.00 38.06 3.66
1642 1661 1.387756 GCGTTCAATTCAATGCACTGC 59.612 47.619 0.87 0.00 38.07 4.40
1643 1662 2.663808 CGTTCAATTCAATGCACTGCA 58.336 42.857 6.09 6.09 44.86 4.41
1644 1663 2.406024 CGTTCAATTCAATGCACTGCAC 59.594 45.455 5.67 0.00 43.04 4.57
1645 1664 2.728690 TCAATTCAATGCACTGCACC 57.271 45.000 5.67 0.00 43.04 5.01
1646 1665 2.241160 TCAATTCAATGCACTGCACCT 58.759 42.857 5.67 0.00 43.04 4.00
1647 1666 2.629137 TCAATTCAATGCACTGCACCTT 59.371 40.909 5.67 0.00 43.04 3.50
1648 1667 3.069872 TCAATTCAATGCACTGCACCTTT 59.930 39.130 5.67 0.00 43.04 3.11
1649 1668 2.512485 TTCAATGCACTGCACCTTTG 57.488 45.000 5.67 7.64 43.04 2.77
1650 1669 1.401761 TCAATGCACTGCACCTTTGT 58.598 45.000 5.67 0.00 43.04 2.83
1651 1670 1.755959 TCAATGCACTGCACCTTTGTT 59.244 42.857 5.67 0.00 43.04 2.83
1652 1671 2.168106 TCAATGCACTGCACCTTTGTTT 59.832 40.909 5.67 0.00 43.04 2.83
1653 1672 3.382865 TCAATGCACTGCACCTTTGTTTA 59.617 39.130 5.67 0.00 43.04 2.01
1654 1673 4.039004 TCAATGCACTGCACCTTTGTTTAT 59.961 37.500 5.67 0.00 43.04 1.40
1655 1674 3.641437 TGCACTGCACCTTTGTTTATC 57.359 42.857 0.00 0.00 31.71 1.75
1656 1675 3.221771 TGCACTGCACCTTTGTTTATCT 58.778 40.909 0.00 0.00 31.71 1.98
1657 1676 3.636300 TGCACTGCACCTTTGTTTATCTT 59.364 39.130 0.00 0.00 31.71 2.40
1658 1677 4.824537 TGCACTGCACCTTTGTTTATCTTA 59.175 37.500 0.00 0.00 31.71 2.10
1659 1678 5.048782 TGCACTGCACCTTTGTTTATCTTAG 60.049 40.000 0.00 0.00 31.71 2.18
1660 1679 5.048713 GCACTGCACCTTTGTTTATCTTAGT 60.049 40.000 0.00 0.00 0.00 2.24
1661 1680 6.515035 GCACTGCACCTTTGTTTATCTTAGTT 60.515 38.462 0.00 0.00 0.00 2.24
1662 1681 7.308348 GCACTGCACCTTTGTTTATCTTAGTTA 60.308 37.037 0.00 0.00 0.00 2.24
1663 1682 8.015658 CACTGCACCTTTGTTTATCTTAGTTAC 58.984 37.037 0.00 0.00 0.00 2.50
1664 1683 7.717875 ACTGCACCTTTGTTTATCTTAGTTACA 59.282 33.333 0.00 0.00 0.00 2.41
1665 1684 8.094798 TGCACCTTTGTTTATCTTAGTTACAG 57.905 34.615 0.00 0.00 0.00 2.74
1666 1685 7.717875 TGCACCTTTGTTTATCTTAGTTACAGT 59.282 33.333 0.00 0.00 0.00 3.55
1678 1697 6.327934 TCTTAGTTACAGTAGTTCGATTGCC 58.672 40.000 0.00 0.00 0.00 4.52
1709 1731 5.531122 TTGGCAATACTACTAGCTAGGTG 57.469 43.478 24.35 17.52 0.00 4.00
1710 1732 3.895656 TGGCAATACTACTAGCTAGGTGG 59.104 47.826 24.35 15.15 0.00 4.61
1715 1737 2.668625 ACTACTAGCTAGGTGGCTTCC 58.331 52.381 24.35 0.00 42.97 3.46
1721 1743 0.978146 GCTAGGTGGCTTCCTGGAGA 60.978 60.000 14.28 0.00 38.15 3.71
1879 1925 0.396001 GAGCTAGGACTCCCTCCGTT 60.396 60.000 0.00 0.00 45.10 4.44
1880 1926 0.396001 AGCTAGGACTCCCTCCGTTC 60.396 60.000 0.00 0.00 45.10 3.95
1881 1927 1.393487 GCTAGGACTCCCTCCGTTCC 61.393 65.000 0.00 0.00 45.10 3.62
1882 1928 0.259356 CTAGGACTCCCTCCGTTCCT 59.741 60.000 0.00 0.00 45.10 3.36
1883 1929 1.493871 CTAGGACTCCCTCCGTTCCTA 59.506 57.143 0.00 0.00 45.10 2.94
1888 1934 3.708121 GGACTCCCTCCGTTCCTAAATAA 59.292 47.826 0.00 0.00 0.00 1.40
1889 1935 4.162888 GGACTCCCTCCGTTCCTAAATAAA 59.837 45.833 0.00 0.00 0.00 1.40
1891 1937 5.742063 ACTCCCTCCGTTCCTAAATAAAAG 58.258 41.667 0.00 0.00 0.00 2.27
1896 1942 7.054751 CCCTCCGTTCCTAAATAAAAGAAGAT 58.945 38.462 0.00 0.00 0.00 2.40
1897 1943 7.556635 CCCTCCGTTCCTAAATAAAAGAAGATT 59.443 37.037 0.00 0.00 0.00 2.40
1898 1944 8.613482 CCTCCGTTCCTAAATAAAAGAAGATTC 58.387 37.037 0.00 0.00 0.00 2.52
1926 2033 5.058149 TGAACTACGTACGGAGCAAAATA 57.942 39.130 27.33 5.46 0.00 1.40
1930 2037 7.758980 TGAACTACGTACGGAGCAAAATAAATA 59.241 33.333 27.33 0.36 0.00 1.40
1933 2040 9.101655 ACTACGTACGGAGCAAAATAAATAAAT 57.898 29.630 27.33 0.00 0.00 1.40
1934 2041 9.925268 CTACGTACGGAGCAAAATAAATAAATT 57.075 29.630 15.87 0.00 0.00 1.82
1975 2082 9.791801 TGTTTATATGTGCATCCATATGTACTT 57.208 29.630 16.29 4.73 45.77 2.24
2021 2128 8.943909 AGGTCTTGTATATTTAGAAGAAACGG 57.056 34.615 4.67 0.00 38.88 4.44
2022 2129 8.755977 AGGTCTTGTATATTTAGAAGAAACGGA 58.244 33.333 4.67 0.00 38.88 4.69
2023 2130 9.032420 GGTCTTGTATATTTAGAAGAAACGGAG 57.968 37.037 4.67 0.00 38.88 4.63
2024 2131 9.032420 GTCTTGTATATTTAGAAGAAACGGAGG 57.968 37.037 4.67 0.00 38.88 4.30
2025 2132 8.202137 TCTTGTATATTTAGAAGAAACGGAGGG 58.798 37.037 1.08 0.00 35.45 4.30
2026 2133 7.664552 TGTATATTTAGAAGAAACGGAGGGA 57.335 36.000 0.00 0.00 0.00 4.20
2027 2134 7.723324 TGTATATTTAGAAGAAACGGAGGGAG 58.277 38.462 0.00 0.00 0.00 4.30
2028 2135 6.809976 ATATTTAGAAGAAACGGAGGGAGT 57.190 37.500 0.00 0.00 0.00 3.85
2029 2136 7.909485 ATATTTAGAAGAAACGGAGGGAGTA 57.091 36.000 0.00 0.00 0.00 2.59
2030 2137 5.397142 TTTAGAAGAAACGGAGGGAGTAC 57.603 43.478 0.00 0.00 0.00 2.73
2031 2138 3.172471 AGAAGAAACGGAGGGAGTACT 57.828 47.619 0.00 0.00 0.00 2.73
2032 2139 3.090790 AGAAGAAACGGAGGGAGTACTC 58.909 50.000 14.87 14.87 36.76 2.59
2066 2173 7.330700 CCCATGTTAATTGACGCTTAAACAAAT 59.669 33.333 0.00 0.00 0.00 2.32
2067 2174 8.161610 CCATGTTAATTGACGCTTAAACAAATG 58.838 33.333 0.00 0.00 0.00 2.32
2068 2175 7.099666 TGTTAATTGACGCTTAAACAAATGC 57.900 32.000 0.00 0.00 0.00 3.56
2069 2176 6.144724 TGTTAATTGACGCTTAAACAAATGCC 59.855 34.615 0.00 0.00 0.00 4.40
2070 2177 4.519540 ATTGACGCTTAAACAAATGCCT 57.480 36.364 0.00 0.00 0.00 4.75
2072 2179 4.314740 TGACGCTTAAACAAATGCCTTT 57.685 36.364 0.00 0.00 0.00 3.11
2074 2181 5.112686 TGACGCTTAAACAAATGCCTTTTT 58.887 33.333 0.00 0.00 0.00 1.94
2140 2247 4.689612 AGTGATTAGTTGTGACCTGTGT 57.310 40.909 0.00 0.00 0.00 3.72
2155 2262 1.933181 CTGTGTGTTTGACTTGAGCGA 59.067 47.619 0.00 0.00 0.00 4.93
2158 2265 3.376859 TGTGTGTTTGACTTGAGCGATTT 59.623 39.130 0.00 0.00 0.00 2.17
2230 2337 2.966050 TGGGTGTTTTGTGCTTGTTTC 58.034 42.857 0.00 0.00 0.00 2.78
2239 2346 0.893727 GTGCTTGTTTCCGGGGACAT 60.894 55.000 0.00 0.00 0.00 3.06
2258 2365 5.333645 GGACATGCATAGATAAAACTGCGAG 60.334 44.000 0.00 0.00 37.44 5.03
2259 2366 4.024556 ACATGCATAGATAAAACTGCGAGC 60.025 41.667 0.00 0.00 37.44 5.03
2280 2387 5.693961 AGCAAAAACCCAATTTGAGGAAAT 58.306 33.333 9.92 0.00 39.56 2.17
2358 2505 7.392113 TCATTGATTACTTTAGGCGAAAAAGGA 59.608 33.333 12.46 3.69 38.09 3.36
2425 2572 1.201647 CACGGACGACACTTACCATCT 59.798 52.381 0.00 0.00 0.00 2.90
2426 2573 1.891150 ACGGACGACACTTACCATCTT 59.109 47.619 0.00 0.00 0.00 2.40
2483 2630 3.372060 GGCAAGTCTAAACAGCAACAAC 58.628 45.455 0.00 0.00 32.28 3.32
2485 2632 3.181491 GCAAGTCTAAACAGCAACAACCA 60.181 43.478 0.00 0.00 0.00 3.67
2559 2738 9.770097 TCTCAAATCTCTACATTGATTGGTATC 57.230 33.333 0.00 0.00 33.72 2.24
2622 2825 9.454859 AACAAATCAGGTTTACAAAATCCAAAA 57.545 25.926 0.00 0.00 0.00 2.44
2636 2839 9.045745 ACAAAATCCAAAACCATCCATATAACT 57.954 29.630 0.00 0.00 0.00 2.24
2673 2876 2.609459 CGCGGCATCTTCTTTACAATCT 59.391 45.455 0.00 0.00 0.00 2.40
2708 2911 3.649073 TGACCATTGACTATATTCGCCG 58.351 45.455 0.00 0.00 0.00 6.46
2762 2965 1.072331 AGACCCTGACGCAACATCTTT 59.928 47.619 0.00 0.00 0.00 2.52
2763 2966 1.197721 GACCCTGACGCAACATCTTTG 59.802 52.381 0.00 0.00 0.00 2.77
2778 2981 2.755650 TCTTTGAGAAGGAACTGTCGC 58.244 47.619 0.00 0.00 40.86 5.19
2819 3022 2.105821 CCAACCACAAGTAGAACCTGGA 59.894 50.000 0.00 0.00 0.00 3.86
2826 3029 4.160439 CACAAGTAGAACCTGGAGCTATCA 59.840 45.833 0.00 0.00 0.00 2.15
2843 3046 5.366768 AGCTATCACCCTCAAAGCATAACTA 59.633 40.000 0.00 0.00 35.63 2.24
2870 3073 7.809806 GGAGTCAACACCTTCAAATATGAAAAG 59.190 37.037 0.00 0.00 44.64 2.27
2885 3088 2.432510 TGAAAAGACGCCAACCCAAAAT 59.567 40.909 0.00 0.00 0.00 1.82
2937 3141 8.218338 AGAATAAAATCTCGATGTCAATTGCT 57.782 30.769 0.00 0.00 0.00 3.91
2987 3191 1.531423 CTCACACAAGCTGGCTGAAT 58.469 50.000 0.00 0.00 0.00 2.57
3003 3207 5.091431 GGCTGAATGAGAATTCAACGAAAG 58.909 41.667 8.44 0.00 39.73 2.62
3028 3232 4.323485 GGAGACACCATCACATTACTTCCA 60.323 45.833 0.00 0.00 38.79 3.53
3034 3238 5.003804 ACCATCACATTACTTCCAGTTGAC 58.996 41.667 0.00 0.00 0.00 3.18
3038 3242 2.224426 ACATTACTTCCAGTTGACGCCA 60.224 45.455 0.00 0.00 0.00 5.69
3052 3256 2.456119 CGCCACACCATCTTCTCGC 61.456 63.158 0.00 0.00 0.00 5.03
3057 3261 0.537188 ACACCATCTTCTCGCCGATT 59.463 50.000 0.00 0.00 0.00 3.34
3074 3278 1.172180 ATTGTTGTCGTGCCCACCAG 61.172 55.000 0.00 0.00 0.00 4.00
3075 3279 3.660111 GTTGTCGTGCCCACCAGC 61.660 66.667 0.00 0.00 0.00 4.85
3077 3281 3.490031 TTGTCGTGCCCACCAGCAT 62.490 57.895 0.00 0.00 46.24 3.79
3095 3592 2.353208 GCATAGGCTAGATTCCGTGAGG 60.353 54.545 0.00 0.00 45.67 3.86
3107 3604 2.734591 GTGAGGTCCTCGTGCACA 59.265 61.111 18.64 3.15 32.35 4.57
3173 3670 1.040339 ACAACACGGCAAACCACCAT 61.040 50.000 0.00 0.00 34.57 3.55
3197 3695 2.425668 CCTCCAAAGTGTTGTTCGGTTT 59.574 45.455 0.00 0.00 32.40 3.27
3201 3699 3.119280 CCAAAGTGTTGTTCGGTTTCCTT 60.119 43.478 0.00 0.00 32.40 3.36
3202 3700 4.102649 CAAAGTGTTGTTCGGTTTCCTTC 58.897 43.478 0.00 0.00 0.00 3.46
3206 3704 2.680841 TGTTGTTCGGTTTCCTTCACAG 59.319 45.455 0.00 0.00 0.00 3.66
3208 3706 1.305201 GTTCGGTTTCCTTCACAGCA 58.695 50.000 0.00 0.00 0.00 4.41
3217 3715 1.163554 CCTTCACAGCAAGGAAGAGC 58.836 55.000 11.43 0.00 45.41 4.09
3245 3745 4.711949 CTCACCAGCAGCCGCCTT 62.712 66.667 0.00 0.00 39.83 4.35
3266 3766 0.689412 GAAGGAGGTGAGGAGAGGGG 60.689 65.000 0.00 0.00 0.00 4.79
3283 3783 2.787567 GGTGAGAGGAGTAGGGCGC 61.788 68.421 0.00 0.00 0.00 6.53
3284 3784 2.052690 GTGAGAGGAGTAGGGCGCA 61.053 63.158 10.83 0.00 0.00 6.09
3285 3785 1.754621 TGAGAGGAGTAGGGCGCAG 60.755 63.158 10.83 0.00 0.00 5.18
3286 3786 1.755008 GAGAGGAGTAGGGCGCAGT 60.755 63.158 10.83 0.00 0.00 4.40
3287 3787 2.010582 GAGAGGAGTAGGGCGCAGTG 62.011 65.000 10.83 0.00 0.00 3.66
3288 3788 3.077556 AGGAGTAGGGCGCAGTGG 61.078 66.667 10.83 0.00 0.00 4.00
3289 3789 4.840005 GGAGTAGGGCGCAGTGGC 62.840 72.222 10.83 0.00 43.88 5.01
3331 3831 3.097162 CCCTGGCCTCCCCCTAAC 61.097 72.222 3.32 0.00 0.00 2.34
3332 3832 2.286121 CCTGGCCTCCCCCTAACA 60.286 66.667 3.32 0.00 0.00 2.41
3333 3833 1.697754 CCTGGCCTCCCCCTAACAT 60.698 63.158 3.32 0.00 0.00 2.71
3334 3834 1.709994 CCTGGCCTCCCCCTAACATC 61.710 65.000 3.32 0.00 0.00 3.06
3335 3835 0.695803 CTGGCCTCCCCCTAACATCT 60.696 60.000 3.32 0.00 0.00 2.90
3336 3836 0.988145 TGGCCTCCCCCTAACATCTG 60.988 60.000 3.32 0.00 0.00 2.90
3337 3837 0.694444 GGCCTCCCCCTAACATCTGA 60.694 60.000 0.00 0.00 0.00 3.27
3338 3838 1.213296 GCCTCCCCCTAACATCTGAA 58.787 55.000 0.00 0.00 0.00 3.02
3339 3839 1.777272 GCCTCCCCCTAACATCTGAAT 59.223 52.381 0.00 0.00 0.00 2.57
3340 3840 2.175715 GCCTCCCCCTAACATCTGAATT 59.824 50.000 0.00 0.00 0.00 2.17
3341 3841 3.373110 GCCTCCCCCTAACATCTGAATTT 60.373 47.826 0.00 0.00 0.00 1.82
3342 3842 4.871822 CCTCCCCCTAACATCTGAATTTT 58.128 43.478 0.00 0.00 0.00 1.82
3343 3843 4.646492 CCTCCCCCTAACATCTGAATTTTG 59.354 45.833 0.00 0.00 0.00 2.44
3344 3844 4.023291 TCCCCCTAACATCTGAATTTTGC 58.977 43.478 0.00 0.00 0.00 3.68
3345 3845 4.026052 CCCCCTAACATCTGAATTTTGCT 58.974 43.478 0.00 0.00 0.00 3.91
3346 3846 4.142093 CCCCCTAACATCTGAATTTTGCTG 60.142 45.833 0.00 0.00 0.00 4.41
3347 3847 4.427312 CCCTAACATCTGAATTTTGCTGC 58.573 43.478 0.00 0.00 0.00 5.25
3348 3848 4.159135 CCCTAACATCTGAATTTTGCTGCT 59.841 41.667 0.00 0.00 0.00 4.24
3349 3849 5.357878 CCCTAACATCTGAATTTTGCTGCTA 59.642 40.000 0.00 0.00 0.00 3.49
3350 3850 6.127647 CCCTAACATCTGAATTTTGCTGCTAA 60.128 38.462 0.00 0.00 0.00 3.09
3351 3851 7.417116 CCCTAACATCTGAATTTTGCTGCTAAT 60.417 37.037 0.00 0.00 0.00 1.73
3352 3852 7.646922 CCTAACATCTGAATTTTGCTGCTAATC 59.353 37.037 0.00 0.00 0.00 1.75
3353 3853 6.770746 ACATCTGAATTTTGCTGCTAATCT 57.229 33.333 0.00 0.00 0.00 2.40
3354 3854 6.561614 ACATCTGAATTTTGCTGCTAATCTG 58.438 36.000 0.00 0.14 0.00 2.90
3355 3855 4.990257 TCTGAATTTTGCTGCTAATCTGC 58.010 39.130 0.00 0.00 39.73 4.26
3356 3856 4.703575 TCTGAATTTTGCTGCTAATCTGCT 59.296 37.500 0.00 0.00 39.95 4.24
3357 3857 5.882000 TCTGAATTTTGCTGCTAATCTGCTA 59.118 36.000 0.00 0.00 39.95 3.49
3358 3858 6.544931 TCTGAATTTTGCTGCTAATCTGCTAT 59.455 34.615 0.00 0.00 39.95 2.97
3359 3859 6.500910 TGAATTTTGCTGCTAATCTGCTATG 58.499 36.000 0.00 0.00 39.95 2.23
3360 3860 6.319405 TGAATTTTGCTGCTAATCTGCTATGA 59.681 34.615 0.00 0.00 39.95 2.15
3361 3861 6.704289 ATTTTGCTGCTAATCTGCTATGAA 57.296 33.333 0.00 0.00 39.95 2.57
3362 3862 5.490139 TTTGCTGCTAATCTGCTATGAAC 57.510 39.130 0.00 0.00 39.95 3.18
3363 3863 4.141233 TGCTGCTAATCTGCTATGAACA 57.859 40.909 0.00 0.00 39.95 3.18
3364 3864 4.124970 TGCTGCTAATCTGCTATGAACAG 58.875 43.478 0.00 0.00 39.95 3.16
3365 3865 4.125703 GCTGCTAATCTGCTATGAACAGT 58.874 43.478 0.00 0.00 36.50 3.55
3366 3866 4.025061 GCTGCTAATCTGCTATGAACAGTG 60.025 45.833 0.00 0.00 36.50 3.66
3367 3867 5.343307 TGCTAATCTGCTATGAACAGTGA 57.657 39.130 0.00 0.00 36.50 3.41
3368 3868 5.111989 TGCTAATCTGCTATGAACAGTGAC 58.888 41.667 0.00 0.00 36.50 3.67
3369 3869 5.111989 GCTAATCTGCTATGAACAGTGACA 58.888 41.667 0.00 0.00 36.50 3.58
3370 3870 5.757320 GCTAATCTGCTATGAACAGTGACAT 59.243 40.000 0.00 5.02 36.50 3.06
3371 3871 6.925718 GCTAATCTGCTATGAACAGTGACATA 59.074 38.462 0.00 5.94 36.50 2.29
3372 3872 7.439356 GCTAATCTGCTATGAACAGTGACATAA 59.561 37.037 0.00 0.00 36.50 1.90
3373 3873 9.486497 CTAATCTGCTATGAACAGTGACATAAT 57.514 33.333 0.00 0.00 36.50 1.28
3374 3874 8.743085 AATCTGCTATGAACAGTGACATAATT 57.257 30.769 0.00 1.60 36.50 1.40
3375 3875 9.836864 AATCTGCTATGAACAGTGACATAATTA 57.163 29.630 0.00 0.00 36.50 1.40
3376 3876 8.877808 TCTGCTATGAACAGTGACATAATTAG 57.122 34.615 0.00 5.66 36.50 1.73
3377 3877 8.478066 TCTGCTATGAACAGTGACATAATTAGT 58.522 33.333 0.00 0.00 36.50 2.24
3378 3878 9.750125 CTGCTATGAACAGTGACATAATTAGTA 57.250 33.333 0.00 0.00 0.00 1.82
3399 3899 9.618890 TTAGTAATCTATTGCTGCTGAAAATCT 57.381 29.630 0.00 0.00 34.54 2.40
3401 3901 9.790344 AGTAATCTATTGCTGCTGAAAATCTAT 57.210 29.630 0.00 0.00 31.39 1.98
3405 3905 9.745880 ATCTATTGCTGCTGAAAATCTATTTTG 57.254 29.630 5.44 0.00 39.86 2.44
3406 3906 6.657836 ATTGCTGCTGAAAATCTATTTTGC 57.342 33.333 5.44 4.85 39.86 3.68
3407 3907 5.395682 TGCTGCTGAAAATCTATTTTGCT 57.604 34.783 5.44 0.00 39.86 3.91
3408 3908 5.786311 TGCTGCTGAAAATCTATTTTGCTT 58.214 33.333 5.44 0.00 39.86 3.91
3409 3909 6.225318 TGCTGCTGAAAATCTATTTTGCTTT 58.775 32.000 5.44 0.00 39.86 3.51
3410 3910 7.377398 TGCTGCTGAAAATCTATTTTGCTTTA 58.623 30.769 5.44 0.00 39.86 1.85
3411 3911 7.543172 TGCTGCTGAAAATCTATTTTGCTTTAG 59.457 33.333 5.44 0.61 39.86 1.85
3412 3912 7.463780 GCTGCTGAAAATCTATTTTGCTTTAGC 60.464 37.037 5.44 5.78 39.86 3.09
3413 3913 7.605449 TGCTGAAAATCTATTTTGCTTTAGCT 58.395 30.769 5.44 0.00 39.86 3.32
3414 3914 8.090214 TGCTGAAAATCTATTTTGCTTTAGCTT 58.910 29.630 5.44 0.00 39.86 3.74
3415 3915 8.378421 GCTGAAAATCTATTTTGCTTTAGCTTG 58.622 33.333 5.44 0.00 39.86 4.01
3416 3916 8.761575 TGAAAATCTATTTTGCTTTAGCTTGG 57.238 30.769 5.44 0.00 39.86 3.61
3417 3917 7.331687 TGAAAATCTATTTTGCTTTAGCTTGGC 59.668 33.333 5.44 0.00 39.86 4.52
3418 3918 4.718940 TCTATTTTGCTTTAGCTTGGCC 57.281 40.909 0.00 0.00 42.66 5.36
3419 3919 2.768253 ATTTTGCTTTAGCTTGGCCC 57.232 45.000 0.00 0.00 42.66 5.80
3420 3920 1.715785 TTTTGCTTTAGCTTGGCCCT 58.284 45.000 0.00 0.00 42.66 5.19
3421 3921 1.256812 TTTGCTTTAGCTTGGCCCTC 58.743 50.000 0.00 0.00 42.66 4.30
3422 3922 0.611896 TTGCTTTAGCTTGGCCCTCC 60.612 55.000 0.00 0.00 42.66 4.30
3423 3923 1.754621 GCTTTAGCTTGGCCCTCCC 60.755 63.158 0.00 0.00 38.21 4.30
3424 3924 2.002625 CTTTAGCTTGGCCCTCCCT 58.997 57.895 0.00 0.00 0.00 4.20
3425 3925 1.213296 CTTTAGCTTGGCCCTCCCTA 58.787 55.000 0.00 0.00 0.00 3.53
3426 3926 1.564348 CTTTAGCTTGGCCCTCCCTAA 59.436 52.381 0.00 0.00 0.00 2.69
3427 3927 1.907240 TTAGCTTGGCCCTCCCTAAT 58.093 50.000 0.00 0.00 0.00 1.73
3428 3928 1.907240 TAGCTTGGCCCTCCCTAATT 58.093 50.000 0.00 0.00 0.00 1.40
3429 3929 1.010795 AGCTTGGCCCTCCCTAATTT 58.989 50.000 0.00 0.00 0.00 1.82
3430 3930 1.114627 GCTTGGCCCTCCCTAATTTG 58.885 55.000 0.00 0.00 0.00 2.32
3431 3931 1.619704 GCTTGGCCCTCCCTAATTTGT 60.620 52.381 0.00 0.00 0.00 2.83
3432 3932 2.820178 CTTGGCCCTCCCTAATTTGTT 58.180 47.619 0.00 0.00 0.00 2.83
3433 3933 3.173151 CTTGGCCCTCCCTAATTTGTTT 58.827 45.455 0.00 0.00 0.00 2.83
3434 3934 3.268034 TGGCCCTCCCTAATTTGTTTT 57.732 42.857 0.00 0.00 0.00 2.43
3435 3935 4.405756 TGGCCCTCCCTAATTTGTTTTA 57.594 40.909 0.00 0.00 0.00 1.52
3436 3936 4.349365 TGGCCCTCCCTAATTTGTTTTAG 58.651 43.478 0.00 0.00 0.00 1.85
3437 3937 3.132289 GGCCCTCCCTAATTTGTTTTAGC 59.868 47.826 0.00 0.00 0.00 3.09
3438 3938 3.767131 GCCCTCCCTAATTTGTTTTAGCA 59.233 43.478 0.00 0.00 0.00 3.49
3439 3939 4.142160 GCCCTCCCTAATTTGTTTTAGCAG 60.142 45.833 0.00 0.00 0.00 4.24
3440 3940 4.142160 CCCTCCCTAATTTGTTTTAGCAGC 60.142 45.833 0.00 0.00 0.00 5.25
3441 3941 4.462483 CCTCCCTAATTTGTTTTAGCAGCA 59.538 41.667 0.00 0.00 0.00 4.41
3442 3942 5.385509 TCCCTAATTTGTTTTAGCAGCAC 57.614 39.130 0.00 0.00 0.00 4.40
3443 3943 5.076873 TCCCTAATTTGTTTTAGCAGCACT 58.923 37.500 0.00 0.00 0.00 4.40
3444 3944 5.538433 TCCCTAATTTGTTTTAGCAGCACTT 59.462 36.000 0.00 0.00 0.00 3.16
3445 3945 5.634859 CCCTAATTTGTTTTAGCAGCACTTG 59.365 40.000 0.00 0.00 0.00 3.16
3446 3946 5.634859 CCTAATTTGTTTTAGCAGCACTTGG 59.365 40.000 0.00 0.00 0.00 3.61
3447 3947 2.507339 TTGTTTTAGCAGCACTTGGC 57.493 45.000 0.00 0.00 45.30 4.52
3448 3948 0.673437 TGTTTTAGCAGCACTTGGCC 59.327 50.000 0.00 0.00 46.50 5.36
3449 3949 0.038251 GTTTTAGCAGCACTTGGCCC 60.038 55.000 0.00 0.00 46.50 5.80
3450 3950 1.184970 TTTTAGCAGCACTTGGCCCC 61.185 55.000 0.00 0.00 46.50 5.80
3451 3951 3.583882 TTAGCAGCACTTGGCCCCC 62.584 63.158 0.00 0.00 46.50 5.40
3453 3953 4.047125 GCAGCACTTGGCCCCCTA 62.047 66.667 0.00 0.00 46.50 3.53
3454 3954 2.763215 CAGCACTTGGCCCCCTAA 59.237 61.111 0.00 0.00 46.50 2.69
3455 3955 1.307647 CAGCACTTGGCCCCCTAAT 59.692 57.895 0.00 0.00 46.50 1.73
3456 3956 0.550914 CAGCACTTGGCCCCCTAATA 59.449 55.000 0.00 0.00 46.50 0.98
3457 3957 0.551396 AGCACTTGGCCCCCTAATAC 59.449 55.000 0.00 0.00 46.50 1.89
3458 3958 0.257616 GCACTTGGCCCCCTAATACA 59.742 55.000 0.00 0.00 36.11 2.29
3459 3959 1.133482 GCACTTGGCCCCCTAATACAT 60.133 52.381 0.00 0.00 36.11 2.29
3460 3960 2.107552 GCACTTGGCCCCCTAATACATA 59.892 50.000 0.00 0.00 36.11 2.29
3461 3961 3.245264 GCACTTGGCCCCCTAATACATAT 60.245 47.826 0.00 0.00 36.11 1.78
3462 3962 4.752903 GCACTTGGCCCCCTAATACATATT 60.753 45.833 0.00 0.00 36.11 1.28
3463 3963 5.393866 CACTTGGCCCCCTAATACATATTT 58.606 41.667 0.00 0.00 0.00 1.40
3464 3964 5.476945 CACTTGGCCCCCTAATACATATTTC 59.523 44.000 0.00 0.00 0.00 2.17
3465 3965 4.668138 TGGCCCCCTAATACATATTTCC 57.332 45.455 0.00 0.00 0.00 3.13
3466 3966 4.256231 TGGCCCCCTAATACATATTTCCT 58.744 43.478 0.00 0.00 0.00 3.36
3467 3967 4.044065 TGGCCCCCTAATACATATTTCCTG 59.956 45.833 0.00 0.00 0.00 3.86
3468 3968 4.569865 GGCCCCCTAATACATATTTCCTGG 60.570 50.000 0.00 0.00 0.00 4.45
3469 3969 4.600062 CCCCCTAATACATATTTCCTGGC 58.400 47.826 0.00 0.00 0.00 4.85
3470 3970 4.292306 CCCCCTAATACATATTTCCTGGCT 59.708 45.833 0.00 0.00 0.00 4.75
3471 3971 5.501156 CCCCTAATACATATTTCCTGGCTC 58.499 45.833 0.00 0.00 0.00 4.70
3472 3972 5.501156 CCCTAATACATATTTCCTGGCTCC 58.499 45.833 0.00 0.00 0.00 4.70
3473 3973 5.178797 CCTAATACATATTTCCTGGCTCCG 58.821 45.833 0.00 0.00 0.00 4.63
3474 3974 2.543777 TACATATTTCCTGGCTCCGC 57.456 50.000 0.00 0.00 0.00 5.54
3485 3985 4.162690 GCTCCGCCACTGGTAGGG 62.163 72.222 10.60 4.33 0.00 3.53
3486 3986 4.162690 CTCCGCCACTGGTAGGGC 62.163 72.222 10.60 0.00 46.80 5.19
3514 4014 6.168389 CGTGTAAATACTAGGGTTTTGTCCT 58.832 40.000 0.00 0.00 38.36 3.85
3517 4017 5.853572 AAATACTAGGGTTTTGTCCTCCA 57.146 39.130 0.00 0.00 35.92 3.86
3529 4029 0.743345 GTCCTCCACGCCCAATGTAC 60.743 60.000 0.00 0.00 0.00 2.90
3530 4030 1.451387 CCTCCACGCCCAATGTACC 60.451 63.158 0.00 0.00 0.00 3.34
3531 4031 1.602237 CTCCACGCCCAATGTACCT 59.398 57.895 0.00 0.00 0.00 3.08
3532 4032 0.462047 CTCCACGCCCAATGTACCTC 60.462 60.000 0.00 0.00 0.00 3.85
3537 4037 1.532238 GCCCAATGTACCTCCCTCC 59.468 63.158 0.00 0.00 0.00 4.30
3595 4242 4.482952 AAAAATCGTAATCCCTCCGTCT 57.517 40.909 0.00 0.00 0.00 4.18
3596 4243 3.454371 AAATCGTAATCCCTCCGTCTG 57.546 47.619 0.00 0.00 0.00 3.51
3597 4244 1.329256 ATCGTAATCCCTCCGTCTGG 58.671 55.000 0.00 0.00 0.00 3.86
3598 4245 0.256752 TCGTAATCCCTCCGTCTGGA 59.743 55.000 0.00 0.00 43.88 3.86
3599 4246 1.108776 CGTAATCCCTCCGTCTGGAA 58.891 55.000 0.00 0.00 45.87 3.53
3602 4249 3.319972 CGTAATCCCTCCGTCTGGAAATA 59.680 47.826 0.00 0.00 45.87 1.40
3603 4250 4.021368 CGTAATCCCTCCGTCTGGAAATAT 60.021 45.833 0.00 0.00 45.87 1.28
3604 4251 5.510861 CGTAATCCCTCCGTCTGGAAATATT 60.511 44.000 0.00 0.00 45.87 1.28
3605 4252 5.388599 AATCCCTCCGTCTGGAAATATTT 57.611 39.130 0.00 0.00 45.87 1.40
3606 4253 4.855298 TCCCTCCGTCTGGAAATATTTT 57.145 40.909 1.43 0.00 45.87 1.82
3607 4254 4.777463 TCCCTCCGTCTGGAAATATTTTC 58.223 43.478 1.43 0.11 45.87 2.29
3609 4256 5.104109 TCCCTCCGTCTGGAAATATTTTCAT 60.104 40.000 9.65 0.00 45.87 2.57
3610 4257 5.594317 CCCTCCGTCTGGAAATATTTTCATT 59.406 40.000 9.65 0.00 45.87 2.57
3637 4284 7.464830 AATGAATAAAAGAGATGTACGGACG 57.535 36.000 0.00 0.00 0.00 4.79
3638 4285 5.345702 TGAATAAAAGAGATGTACGGACGG 58.654 41.667 0.00 0.00 0.00 4.79
3639 4286 5.125900 TGAATAAAAGAGATGTACGGACGGA 59.874 40.000 0.00 0.00 0.00 4.69
3640 4287 3.505464 AAAAGAGATGTACGGACGGAG 57.495 47.619 0.00 0.00 0.00 4.63
3641 4288 1.390565 AAGAGATGTACGGACGGAGG 58.609 55.000 0.00 0.00 0.00 4.30
3642 4289 0.465824 AGAGATGTACGGACGGAGGG 60.466 60.000 0.00 0.00 0.00 4.30
3643 4290 0.465097 GAGATGTACGGACGGAGGGA 60.465 60.000 0.00 0.00 0.00 4.20
3650 4297 0.033796 ACGGACGGAGGGAGTATCAA 60.034 55.000 0.00 0.00 36.25 2.57
3666 4313 2.354109 TCAAGATCTGCACGTCACTC 57.646 50.000 0.00 0.00 0.00 3.51
3679 4356 3.062639 CACGTCACTCAATAATGGTCTGC 59.937 47.826 0.00 0.00 0.00 4.26
3692 4369 1.510480 GGTCTGCAGGTCACTTGCAC 61.510 60.000 11.17 1.95 34.61 4.57
3693 4370 0.533755 GTCTGCAGGTCACTTGCACT 60.534 55.000 11.17 0.00 34.61 4.40
3694 4371 0.181114 TCTGCAGGTCACTTGCACTT 59.819 50.000 11.17 0.00 34.61 3.16
3695 4372 0.309922 CTGCAGGTCACTTGCACTTG 59.690 55.000 11.17 0.00 34.61 3.16
3733 4410 0.380378 ACTGCACGCGAAACACATTT 59.620 45.000 15.93 0.00 0.00 2.32
3738 4415 2.563976 CACGCGAAACACATTTCAGAG 58.436 47.619 15.93 0.00 43.90 3.35
3740 4417 1.798223 CGCGAAACACATTTCAGAGGA 59.202 47.619 0.00 0.00 43.90 3.71
3762 4439 3.259123 AGGCAGCTAGAAAATGGTTTTGG 59.741 43.478 0.00 0.00 31.94 3.28
3765 4442 4.261994 GCAGCTAGAAAATGGTTTTGGACA 60.262 41.667 0.00 0.00 31.94 4.02
3767 4444 4.021981 AGCTAGAAAATGGTTTTGGACAGC 60.022 41.667 0.00 0.00 31.94 4.40
3781 4459 1.298859 GACAGCAAAGTAGGCCACGG 61.299 60.000 5.01 0.00 0.00 4.94
3788 4466 1.472188 AAGTAGGCCACGGTCTAGTC 58.528 55.000 5.01 0.00 35.19 2.59
3982 4666 1.276705 GTCCCTTTCTCACCACTCCTC 59.723 57.143 0.00 0.00 0.00 3.71
4050 4734 2.366570 GTGCTCTCTCCCTCCCCT 59.633 66.667 0.00 0.00 0.00 4.79
4060 4744 1.076187 CTCCCTCCCCTTCTTGCTTTT 59.924 52.381 0.00 0.00 0.00 2.27
4061 4745 2.308866 CTCCCTCCCCTTCTTGCTTTTA 59.691 50.000 0.00 0.00 0.00 1.52
4498 5182 1.498264 TCGGTAATCAATCCCGGGAA 58.502 50.000 30.84 12.52 41.98 3.97
4499 5183 1.838715 TCGGTAATCAATCCCGGGAAA 59.161 47.619 30.84 16.96 41.98 3.13
4512 5196 3.171348 GGAAACCCCACAGGCTCT 58.829 61.111 0.00 0.00 40.58 4.09
4513 5197 1.303643 GGAAACCCCACAGGCTCTG 60.304 63.158 1.16 1.16 40.58 3.35
4514 5198 1.303643 GAAACCCCACAGGCTCTGG 60.304 63.158 1.18 1.18 40.58 3.86
4515 5199 3.513750 AAACCCCACAGGCTCTGGC 62.514 63.158 2.84 0.00 40.58 4.85
4560 5244 2.620112 GCACATGCTTGCGTCTGGT 61.620 57.895 0.00 0.00 38.21 4.00
4729 5415 1.823295 GCGGTGATTCTCCTGCCTA 59.177 57.895 3.45 0.00 0.00 3.93
4832 5526 2.285756 CGACCTGTTGACGTAGCAAAAA 59.714 45.455 0.00 0.00 0.00 1.94
4888 5588 2.512515 GCCAGCCATGTCGAGGAC 60.513 66.667 0.00 0.00 0.00 3.85
4966 5674 3.125829 CGTGCTGCATCTTTGATTGTACT 59.874 43.478 5.27 0.00 0.00 2.73
4967 5675 4.329801 CGTGCTGCATCTTTGATTGTACTA 59.670 41.667 5.27 0.00 0.00 1.82
4968 5676 5.501413 CGTGCTGCATCTTTGATTGTACTAG 60.501 44.000 5.27 0.00 0.00 2.57
4979 5687 7.828717 TCTTTGATTGTACTAGCCAATGATTGA 59.171 33.333 6.76 4.27 32.84 2.57
5036 5746 2.256117 ACCACCAGTAGAGTTGCAAC 57.744 50.000 22.17 22.17 0.00 4.17
5172 5882 1.069765 CACTGTCTTCACCGGCACT 59.930 57.895 0.00 0.00 0.00 4.40
5175 5885 3.414700 GTCTTCACCGGCACTGCG 61.415 66.667 0.00 0.00 0.00 5.18
5214 5924 2.182030 GACTTCTCCACCCTCGCG 59.818 66.667 0.00 0.00 0.00 5.87
5321 6031 5.121811 CCATATGCTTCACAGTAGCTTTCT 58.878 41.667 0.00 0.00 39.38 2.52
5322 6032 5.587844 CCATATGCTTCACAGTAGCTTTCTT 59.412 40.000 0.00 0.00 39.38 2.52
5323 6033 6.238320 CCATATGCTTCACAGTAGCTTTCTTC 60.238 42.308 0.00 0.00 39.38 2.87
5334 6044 7.900352 CACAGTAGCTTTCTTCAAATATTCGAC 59.100 37.037 0.00 0.00 0.00 4.20
5342 6052 5.404096 TCTTCAAATATTCGACGCTGTACA 58.596 37.500 0.00 0.00 0.00 2.90
5661 6371 2.046864 CGACGAGCTCCTCTTCCCA 61.047 63.158 8.47 0.00 0.00 4.37
5735 6445 2.184322 CATGGCGGTGCTCTACGT 59.816 61.111 0.00 0.00 0.00 3.57
5865 6575 4.726416 CCATTGATCACTTGCTTGTACAC 58.274 43.478 0.00 0.00 0.00 2.90
5866 6576 4.216042 CCATTGATCACTTGCTTGTACACA 59.784 41.667 0.00 0.00 0.00 3.72
5867 6577 5.106038 CCATTGATCACTTGCTTGTACACAT 60.106 40.000 0.00 0.00 0.00 3.21
5869 6579 7.361971 CCATTGATCACTTGCTTGTACACATAA 60.362 37.037 0.00 0.00 0.00 1.90
5870 6580 7.503521 TTGATCACTTGCTTGTACACATAAA 57.496 32.000 0.00 0.00 0.00 1.40
5873 6583 6.935741 TCACTTGCTTGTACACATAAAACT 57.064 33.333 0.00 0.00 0.00 2.66
5878 6604 8.679100 ACTTGCTTGTACACATAAAACTTAACA 58.321 29.630 0.00 0.00 0.00 2.41
5912 6639 5.592104 AATCCGACACCTTGAAACTTTTT 57.408 34.783 0.00 0.00 0.00 1.94
5925 6652 5.901552 TGAAACTTTTTCAGGGATGTTCAC 58.098 37.500 0.00 0.00 0.00 3.18
5943 6670 2.494471 TCACGGAATAGCGAAGAGGAAA 59.506 45.455 0.00 0.00 0.00 3.13
6063 6790 0.938008 GTGTTAATGCCGGAGCTAGC 59.062 55.000 5.05 6.62 40.80 3.42
6085 6812 9.265901 CTAGCTAGCATGTACAGTTTCATTATT 57.734 33.333 18.83 0.00 0.00 1.40
6127 6854 4.759782 TCAAAATTCTTTCACCCGCAAAA 58.240 34.783 0.00 0.00 0.00 2.44
6172 6899 2.986479 GGTTTTGATCGTGGCAAATGTC 59.014 45.455 0.00 0.00 35.41 3.06
6174 6901 2.987413 TTGATCGTGGCAAATGTCAC 57.013 45.000 8.06 8.06 46.44 3.67
6196 6923 2.742053 ACGAGGCATTGTGTATGTTGTC 59.258 45.455 0.00 0.00 36.57 3.18
6202 6929 5.412594 AGGCATTGTGTATGTTGTCTGTAAG 59.587 40.000 0.00 0.00 36.57 2.34
6203 6930 5.411361 GGCATTGTGTATGTTGTCTGTAAGA 59.589 40.000 0.00 0.00 37.30 2.10
6204 6931 6.072728 GGCATTGTGTATGTTGTCTGTAAGAA 60.073 38.462 0.00 0.00 39.87 2.52
6245 6972 4.147479 GCCGTTGTTGTATAAAACAGTTGC 59.853 41.667 8.47 8.61 40.93 4.17
6336 7072 4.207224 GGATACGATGTTTCATGTCTGACG 59.793 45.833 2.98 0.00 0.00 4.35
6340 7076 1.418373 TGTTTCATGTCTGACGCTCG 58.582 50.000 2.98 0.00 0.00 5.03
6392 10161 1.146041 GCTGATGATGGCCACCGTA 59.854 57.895 8.16 0.00 0.00 4.02
6412 10184 4.034394 CGTACGGTAGTGTATACAGCTTCA 59.966 45.833 7.57 0.00 0.00 3.02
6426 10202 1.902508 AGCTTCAAATCCCACTCTCGA 59.097 47.619 0.00 0.00 0.00 4.04
6430 10206 4.201861 GCTTCAAATCCCACTCTCGATTTC 60.202 45.833 0.00 0.00 36.74 2.17
6437 10213 5.165961 TCCCACTCTCGATTTCTGAAAAT 57.834 39.130 6.95 0.00 37.80 1.82
6464 10242 4.946784 ATCATTTCTGCTTCGGTACAAC 57.053 40.909 0.00 0.00 0.00 3.32
6465 10243 2.734606 TCATTTCTGCTTCGGTACAACG 59.265 45.455 0.00 0.00 0.00 4.10
6467 10245 1.774639 TTCTGCTTCGGTACAACGTC 58.225 50.000 0.00 0.00 34.94 4.34
6543 10322 2.811431 CGGTCAGTCAAATTTGTGGCTA 59.189 45.455 17.47 0.00 30.51 3.93
6545 10324 4.437390 CGGTCAGTCAAATTTGTGGCTATC 60.437 45.833 17.47 10.02 30.51 2.08
6565 10349 6.694411 GCTATCGATTCAAAATGCTTTGTGAT 59.306 34.615 1.71 5.29 42.26 3.06
6566 10350 7.857389 GCTATCGATTCAAAATGCTTTGTGATA 59.143 33.333 1.71 5.96 42.26 2.15
6567 10351 9.720667 CTATCGATTCAAAATGCTTTGTGATAA 57.279 29.630 1.71 0.00 42.26 1.75
6568 10352 8.624701 ATCGATTCAAAATGCTTTGTGATAAG 57.375 30.769 6.07 1.90 42.26 1.73
6613 10398 7.336931 ACAAACTCTGTTACTTGTTCAGTTGAT 59.663 33.333 0.00 0.00 36.88 2.57
6614 10399 7.865706 AACTCTGTTACTTGTTCAGTTGATT 57.134 32.000 0.00 0.00 36.88 2.57
6638 10429 4.380843 TTTTTGCCTATCCTTGGTCAGA 57.619 40.909 0.00 0.00 0.00 3.27
6765 10570 5.633996 TGTGTTTGCTTTTATTTTCTGCG 57.366 34.783 0.00 0.00 0.00 5.18
6853 10663 6.993786 TTCAGATGTTGAGTGTGTGTAAAA 57.006 33.333 0.00 0.00 37.07 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.021016 ACTTGCTAGTCCGAGTTTCAATCT 60.021 41.667 0.00 0.00 0.00 2.40
1 2 4.246458 ACTTGCTAGTCCGAGTTTCAATC 58.754 43.478 0.00 0.00 0.00 2.67
2 3 4.246458 GACTTGCTAGTCCGAGTTTCAAT 58.754 43.478 16.35 0.00 44.15 2.57
3 4 3.650139 GACTTGCTAGTCCGAGTTTCAA 58.350 45.455 16.35 0.00 44.15 2.69
4 5 3.299340 GACTTGCTAGTCCGAGTTTCA 57.701 47.619 16.35 0.00 44.15 2.69
14 15 6.156949 TGGGATCAAATTCTAGACTTGCTAGT 59.843 38.462 0.00 0.00 45.60 2.57
15 16 6.586344 TGGGATCAAATTCTAGACTTGCTAG 58.414 40.000 8.35 0.00 46.57 3.42
16 17 6.560003 TGGGATCAAATTCTAGACTTGCTA 57.440 37.500 8.35 0.00 0.00 3.49
17 18 5.441718 TGGGATCAAATTCTAGACTTGCT 57.558 39.130 8.35 0.70 0.00 3.91
18 19 5.649831 AGTTGGGATCAAATTCTAGACTTGC 59.350 40.000 8.35 0.00 34.28 4.01
19 20 7.693969 AAGTTGGGATCAAATTCTAGACTTG 57.306 36.000 7.24 7.24 36.60 3.16
28 29 7.846101 AGAAAGAAGAAGTTGGGATCAAATT 57.154 32.000 0.00 0.00 42.83 1.82
29 30 8.166726 ACTAGAAAGAAGAAGTTGGGATCAAAT 58.833 33.333 0.00 0.00 34.28 2.32
30 31 7.518188 ACTAGAAAGAAGAAGTTGGGATCAAA 58.482 34.615 0.00 0.00 34.28 2.69
31 32 7.079451 ACTAGAAAGAAGAAGTTGGGATCAA 57.921 36.000 0.00 0.00 0.00 2.57
32 33 6.688073 ACTAGAAAGAAGAAGTTGGGATCA 57.312 37.500 0.00 0.00 0.00 2.92
33 34 8.068892 TCTACTAGAAAGAAGAAGTTGGGATC 57.931 38.462 0.00 0.00 0.00 3.36
34 35 8.437274 TTCTACTAGAAAGAAGAAGTTGGGAT 57.563 34.615 0.00 0.00 29.99 3.85
35 36 7.850935 TTCTACTAGAAAGAAGAAGTTGGGA 57.149 36.000 0.00 0.00 29.99 4.37
36 37 8.904099 TTTTCTACTAGAAAGAAGAAGTTGGG 57.096 34.615 10.48 0.00 44.14 4.12
61 62 6.454795 ACATGTACGAAATGAATGCCTTTTT 58.545 32.000 0.00 0.00 0.00 1.94
62 63 6.024552 ACATGTACGAAATGAATGCCTTTT 57.975 33.333 0.00 0.00 0.00 2.27
106 107 0.253044 TGTGCACAGGCTCCTATTCC 59.747 55.000 17.42 0.00 41.91 3.01
109 110 2.025981 TCAAATGTGCACAGGCTCCTAT 60.026 45.455 25.84 2.15 41.91 2.57
112 113 0.961019 TTCAAATGTGCACAGGCTCC 59.039 50.000 25.84 0.00 41.91 4.70
141 142 1.010419 ATCGACGTGTACGGTTTGGC 61.010 55.000 9.40 0.00 44.95 4.52
152 153 0.179121 TTTGGATCCGGATCGACGTG 60.179 55.000 32.72 0.00 38.69 4.49
189 198 4.892433 TGGCAATTTTTGAGGTAACATGG 58.108 39.130 0.00 0.00 41.41 3.66
278 287 5.177511 TCTGTTTCATTAACGAACAGCTCAG 59.822 40.000 16.66 7.45 46.04 3.35
305 314 2.849966 CGCACGTGCTCGCTACATC 61.850 63.158 35.27 5.71 41.18 3.06
323 339 0.036875 ACTGAACCTGGTTAGCAGCC 59.963 55.000 21.69 7.30 0.00 4.85
343 359 1.511318 TTTTGGCGATGACACGGTGG 61.511 55.000 13.48 0.00 0.00 4.61
345 361 0.309612 GTTTTTGGCGATGACACGGT 59.690 50.000 0.00 0.00 0.00 4.83
417 433 1.943340 GAGGGCGAATGATTGGAGTTC 59.057 52.381 0.00 0.00 0.00 3.01
443 459 0.389296 CGTGAGTGCATACAACGGGA 60.389 55.000 0.00 0.00 36.26 5.14
848 864 1.295423 GGGCTTGACTACGGCAGAA 59.705 57.895 0.00 0.00 0.00 3.02
852 868 2.436115 GGTGGGCTTGACTACGGC 60.436 66.667 0.00 0.00 0.00 5.68
870 886 8.910351 AGAAAATTACTCTTATACCCTGATGC 57.090 34.615 0.00 0.00 0.00 3.91
904 920 8.612145 TGGCAGAAGACTATGTAGGTATATCTA 58.388 37.037 0.00 0.00 0.00 1.98
905 921 7.471041 TGGCAGAAGACTATGTAGGTATATCT 58.529 38.462 0.00 0.00 0.00 1.98
993 1012 4.809496 CCCTTGCCCATGCTCGCT 62.809 66.667 0.00 0.00 38.71 4.93
1131 1150 3.986006 GCCGCCGGGATCGACATA 61.986 66.667 4.77 0.00 39.00 2.29
1314 1333 1.262683 GCTATGAAGATGTTGAGCGCC 59.737 52.381 2.29 0.00 0.00 6.53
1320 1339 4.095483 GTGGTGAAGGCTATGAAGATGTTG 59.905 45.833 0.00 0.00 0.00 3.33
1324 1343 2.158900 CGGTGGTGAAGGCTATGAAGAT 60.159 50.000 0.00 0.00 0.00 2.40
1622 1641 1.387756 GCAGTGCATTGAATTGAACGC 59.612 47.619 14.15 0.00 29.81 4.84
1630 1649 1.755959 ACAAAGGTGCAGTGCATTGAA 59.244 42.857 28.08 0.00 41.91 2.69
1636 1655 3.923017 AGATAAACAAAGGTGCAGTGC 57.077 42.857 8.58 8.58 0.00 4.40
1637 1656 6.560253 ACTAAGATAAACAAAGGTGCAGTG 57.440 37.500 0.00 0.00 0.00 3.66
1638 1657 7.717875 TGTAACTAAGATAAACAAAGGTGCAGT 59.282 33.333 0.00 0.00 0.00 4.40
1640 1659 7.717875 ACTGTAACTAAGATAAACAAAGGTGCA 59.282 33.333 0.00 0.00 0.00 4.57
1641 1660 8.095937 ACTGTAACTAAGATAAACAAAGGTGC 57.904 34.615 0.00 0.00 0.00 5.01
1651 1670 9.512435 GCAATCGAACTACTGTAACTAAGATAA 57.488 33.333 0.00 0.00 0.00 1.75
1652 1671 8.133627 GGCAATCGAACTACTGTAACTAAGATA 58.866 37.037 0.00 0.00 0.00 1.98
1653 1672 6.979238 GGCAATCGAACTACTGTAACTAAGAT 59.021 38.462 0.00 0.00 0.00 2.40
1654 1673 6.152323 AGGCAATCGAACTACTGTAACTAAGA 59.848 38.462 0.00 0.00 0.00 2.10
1655 1674 6.331061 AGGCAATCGAACTACTGTAACTAAG 58.669 40.000 0.00 0.00 0.00 2.18
1656 1675 6.276832 AGGCAATCGAACTACTGTAACTAA 57.723 37.500 0.00 0.00 0.00 2.24
1657 1676 5.909621 AGGCAATCGAACTACTGTAACTA 57.090 39.130 0.00 0.00 0.00 2.24
1658 1677 4.803098 AGGCAATCGAACTACTGTAACT 57.197 40.909 0.00 0.00 0.00 2.24
1659 1678 5.407387 TGAAAGGCAATCGAACTACTGTAAC 59.593 40.000 0.00 0.00 0.00 2.50
1660 1679 5.543714 TGAAAGGCAATCGAACTACTGTAA 58.456 37.500 0.00 0.00 0.00 2.41
1661 1680 5.142061 TGAAAGGCAATCGAACTACTGTA 57.858 39.130 0.00 0.00 0.00 2.74
1662 1681 4.002906 TGAAAGGCAATCGAACTACTGT 57.997 40.909 0.00 0.00 0.00 3.55
1663 1682 5.551760 AATGAAAGGCAATCGAACTACTG 57.448 39.130 0.00 0.00 0.00 2.74
1664 1683 6.575162 AAAATGAAAGGCAATCGAACTACT 57.425 33.333 0.00 0.00 0.00 2.57
1665 1684 6.089417 CCAAAAATGAAAGGCAATCGAACTAC 59.911 38.462 0.00 0.00 0.00 2.73
1666 1685 6.155827 CCAAAAATGAAAGGCAATCGAACTA 58.844 36.000 0.00 0.00 0.00 2.24
1678 1697 8.462016 AGCTAGTAGTATTGCCAAAAATGAAAG 58.538 33.333 0.00 0.00 0.00 2.62
1709 1731 0.393537 CACATGGTCTCCAGGAAGCC 60.394 60.000 7.43 0.00 37.52 4.35
1710 1732 0.615331 TCACATGGTCTCCAGGAAGC 59.385 55.000 7.43 0.00 37.52 3.86
1715 1737 0.392193 GGCTGTCACATGGTCTCCAG 60.392 60.000 0.00 0.00 36.75 3.86
1721 1743 0.107993 CGATCTGGCTGTCACATGGT 60.108 55.000 0.00 0.00 0.00 3.55
1860 1888 0.396001 AACGGAGGGAGTCCTAGCTC 60.396 60.000 9.58 7.24 45.05 4.09
1891 1937 9.327529 CCGTACGTAGTTCATATTAGAATCTTC 57.672 37.037 15.21 0.00 37.78 2.87
1896 1942 6.260714 TGCTCCGTACGTAGTTCATATTAGAA 59.739 38.462 15.21 0.00 37.78 2.10
1897 1943 5.759763 TGCTCCGTACGTAGTTCATATTAGA 59.240 40.000 15.21 0.00 37.78 2.10
1898 1944 5.993891 TGCTCCGTACGTAGTTCATATTAG 58.006 41.667 15.21 0.00 37.78 1.73
1900 1946 4.906065 TGCTCCGTACGTAGTTCATATT 57.094 40.909 15.21 0.00 37.78 1.28
1902 1948 4.700268 TTTGCTCCGTACGTAGTTCATA 57.300 40.909 15.21 0.00 37.78 2.15
1903 1949 3.581024 TTTGCTCCGTACGTAGTTCAT 57.419 42.857 15.21 0.00 37.78 2.57
1904 1950 3.367992 TTTTGCTCCGTACGTAGTTCA 57.632 42.857 15.21 0.00 37.78 3.18
1905 1951 6.393720 TTTATTTTGCTCCGTACGTAGTTC 57.606 37.500 15.21 0.00 37.78 3.01
1906 1952 6.973229 ATTTATTTTGCTCCGTACGTAGTT 57.027 33.333 15.21 0.00 37.78 2.24
1908 1954 9.925268 AATTTATTTATTTTGCTCCGTACGTAG 57.075 29.630 15.21 9.26 0.00 3.51
1995 2102 9.379791 CCGTTTCTTCTAAATATACAAGACCTT 57.620 33.333 0.00 0.00 0.00 3.50
1996 2103 8.755977 TCCGTTTCTTCTAAATATACAAGACCT 58.244 33.333 0.00 0.00 0.00 3.85
1997 2104 8.937634 TCCGTTTCTTCTAAATATACAAGACC 57.062 34.615 0.00 0.00 0.00 3.85
1998 2105 9.032420 CCTCCGTTTCTTCTAAATATACAAGAC 57.968 37.037 0.00 0.00 0.00 3.01
2000 2107 8.202137 TCCCTCCGTTTCTTCTAAATATACAAG 58.798 37.037 0.00 0.00 0.00 3.16
2001 2108 8.081517 TCCCTCCGTTTCTTCTAAATATACAA 57.918 34.615 0.00 0.00 0.00 2.41
2005 2112 6.809976 ACTCCCTCCGTTTCTTCTAAATAT 57.190 37.500 0.00 0.00 0.00 1.28
2008 2115 5.082425 AGTACTCCCTCCGTTTCTTCTAAA 58.918 41.667 0.00 0.00 0.00 1.85
2009 2116 4.670765 AGTACTCCCTCCGTTTCTTCTAA 58.329 43.478 0.00 0.00 0.00 2.10
2010 2117 4.268359 GAGTACTCCCTCCGTTTCTTCTA 58.732 47.826 12.13 0.00 0.00 2.10
2011 2118 3.090790 GAGTACTCCCTCCGTTTCTTCT 58.909 50.000 12.13 0.00 0.00 2.85
2013 2120 2.177734 GGAGTACTCCCTCCGTTTCTT 58.822 52.381 28.87 0.00 43.94 2.52
2025 2132 3.041946 ACATGGGATGAAGGGAGTACTC 58.958 50.000 14.87 14.87 0.00 2.59
2026 2133 3.136641 ACATGGGATGAAGGGAGTACT 57.863 47.619 0.00 0.00 0.00 2.73
2027 2134 3.933861 AACATGGGATGAAGGGAGTAC 57.066 47.619 0.00 0.00 0.00 2.73
2028 2135 6.159575 TCAATTAACATGGGATGAAGGGAGTA 59.840 38.462 0.00 0.00 0.00 2.59
2029 2136 5.044179 TCAATTAACATGGGATGAAGGGAGT 60.044 40.000 0.00 0.00 0.00 3.85
2030 2137 5.300286 GTCAATTAACATGGGATGAAGGGAG 59.700 44.000 0.00 0.00 0.00 4.30
2031 2138 5.200483 GTCAATTAACATGGGATGAAGGGA 58.800 41.667 0.00 0.00 0.00 4.20
2032 2139 4.036734 CGTCAATTAACATGGGATGAAGGG 59.963 45.833 0.00 0.00 0.00 3.95
2114 2221 7.719633 ACACAGGTCACAACTAATCACTAAATT 59.280 33.333 0.00 0.00 0.00 1.82
2140 2247 3.812609 TGCTAAATCGCTCAAGTCAAACA 59.187 39.130 0.00 0.00 0.00 2.83
2230 2337 3.417069 TTTATCTATGCATGTCCCCGG 57.583 47.619 10.16 0.00 0.00 5.73
2239 2346 3.530535 TGCTCGCAGTTTTATCTATGCA 58.469 40.909 0.00 0.00 38.60 3.96
2258 2365 5.278414 CCATTTCCTCAAATTGGGTTTTTGC 60.278 40.000 0.00 0.00 34.73 3.68
2259 2366 5.278414 GCCATTTCCTCAAATTGGGTTTTTG 60.278 40.000 0.00 0.00 35.79 2.44
2280 2387 0.036483 TATGCAAGTTCGCTCTGCCA 60.036 50.000 0.00 0.00 33.44 4.92
2327 2437 9.921637 TTTCGCCTAAAGTAATCAATGAAAAAT 57.078 25.926 0.00 0.00 0.00 1.82
2332 2442 7.392113 TCCTTTTTCGCCTAAAGTAATCAATGA 59.608 33.333 0.00 0.00 32.06 2.57
2333 2443 7.535139 TCCTTTTTCGCCTAAAGTAATCAATG 58.465 34.615 0.00 0.00 32.06 2.82
2334 2444 7.148069 CCTCCTTTTTCGCCTAAAGTAATCAAT 60.148 37.037 0.00 0.00 32.06 2.57
2336 2446 5.646360 CCTCCTTTTTCGCCTAAAGTAATCA 59.354 40.000 0.00 0.00 32.06 2.57
2343 2490 2.279935 TGCCTCCTTTTTCGCCTAAA 57.720 45.000 0.00 0.00 0.00 1.85
2443 2590 4.151121 TGCCCATAAATGGTGTGATATGG 58.849 43.478 8.16 4.11 46.65 2.74
2449 2596 3.091545 AGACTTGCCCATAAATGGTGTG 58.908 45.455 8.16 0.00 46.65 3.82
2483 2630 8.731275 TTACTTACATGACATAATCCAACTGG 57.269 34.615 0.00 0.00 0.00 4.00
2537 2716 9.613428 TTTCGATACCAATCAATGTAGAGATTT 57.387 29.630 0.00 0.00 32.43 2.17
2558 2737 2.286713 CGCTGGTTGTCATTGTTTTCGA 60.287 45.455 0.00 0.00 0.00 3.71
2559 2738 2.043411 CGCTGGTTGTCATTGTTTTCG 58.957 47.619 0.00 0.00 0.00 3.46
2583 2785 6.356556 ACCTGATTTGTTCGATATCAATGGA 58.643 36.000 3.12 0.00 0.00 3.41
2584 2786 6.624352 ACCTGATTTGTTCGATATCAATGG 57.376 37.500 3.12 0.00 0.00 3.16
2673 2876 5.587043 GTCAATGGTCATACGGTTTGGATAA 59.413 40.000 0.00 0.00 0.00 1.75
2751 2954 3.499918 AGTTCCTTCTCAAAGATGTTGCG 59.500 43.478 0.00 0.00 34.14 4.85
2752 2955 4.276926 ACAGTTCCTTCTCAAAGATGTTGC 59.723 41.667 0.00 0.00 34.14 4.17
2762 2965 0.318441 CCAGCGACAGTTCCTTCTCA 59.682 55.000 0.00 0.00 0.00 3.27
2763 2966 1.016653 GCCAGCGACAGTTCCTTCTC 61.017 60.000 0.00 0.00 0.00 2.87
2778 2981 0.534427 ATCAGTCATCGGCATGCCAG 60.534 55.000 34.93 26.16 35.37 4.85
2819 3022 4.164988 AGTTATGCTTTGAGGGTGATAGCT 59.835 41.667 0.00 0.00 33.15 3.32
2826 3029 4.104831 ACTCCTAGTTATGCTTTGAGGGT 58.895 43.478 0.00 0.00 31.71 4.34
2843 3046 6.126863 TCATATTTGAAGGTGTTGACTCCT 57.873 37.500 0.00 0.00 41.23 3.69
2870 3073 3.859411 TTATCATTTTGGGTTGGCGTC 57.141 42.857 0.00 0.00 0.00 5.19
2885 3088 6.207614 TCGGTGTGAAAACCAATGATTTATCA 59.792 34.615 0.00 0.00 40.53 2.15
2896 3099 2.992124 TTCTCTCGGTGTGAAAACCA 57.008 45.000 0.00 0.00 40.53 3.67
2937 3141 2.509166 AGAGGTGGATGACGACACTA 57.491 50.000 0.00 0.00 37.72 2.74
2987 3191 5.221441 TGTCTCCTCTTTCGTTGAATTCTCA 60.221 40.000 7.05 0.00 0.00 3.27
3003 3207 4.744795 AGTAATGTGATGGTGTCTCCTC 57.255 45.455 0.00 0.00 37.07 3.71
3028 3232 0.108585 AAGATGGTGTGGCGTCAACT 59.891 50.000 0.00 0.00 0.00 3.16
3034 3238 2.456119 GCGAGAAGATGGTGTGGCG 61.456 63.158 0.00 0.00 0.00 5.69
3038 3242 0.537188 AATCGGCGAGAAGATGGTGT 59.463 50.000 17.22 0.00 0.00 4.16
3052 3256 1.963855 TGGGCACGACAACAATCGG 60.964 57.895 0.00 0.00 46.56 4.18
3057 3261 2.203139 CTGGTGGGCACGACAACA 60.203 61.111 0.00 0.00 39.40 3.33
3074 3278 2.353208 CCTCACGGAATCTAGCCTATGC 60.353 54.545 0.00 0.00 37.95 3.14
3075 3279 2.894126 ACCTCACGGAATCTAGCCTATG 59.106 50.000 0.00 0.00 0.00 2.23
3077 3281 2.584236 GACCTCACGGAATCTAGCCTA 58.416 52.381 0.00 0.00 0.00 3.93
3163 3660 0.114168 TTGGAGGGGATGGTGGTTTG 59.886 55.000 0.00 0.00 0.00 2.93
3173 3670 1.476110 CGAACAACACTTTGGAGGGGA 60.476 52.381 0.00 0.00 37.00 4.81
3201 3699 1.130054 AGGGCTCTTCCTTGCTGTGA 61.130 55.000 0.00 0.00 32.13 3.58
3202 3700 0.959372 CAGGGCTCTTCCTTGCTGTG 60.959 60.000 0.00 0.00 35.00 3.66
3208 3706 4.416738 GCGGCAGGGCTCTTCCTT 62.417 66.667 0.00 0.00 34.31 3.36
3245 3745 1.571457 CCCTCTCCTCACCTCCTTCTA 59.429 57.143 0.00 0.00 0.00 2.10
3266 3766 2.010582 CTGCGCCCTACTCCTCTCAC 62.011 65.000 4.18 0.00 0.00 3.51
3283 3783 4.087892 CCCCTGTCTCCGCCACTG 62.088 72.222 0.00 0.00 0.00 3.66
3314 3814 3.097162 GTTAGGGGGAGGCCAGGG 61.097 72.222 5.01 0.00 0.00 4.45
3315 3815 1.697754 ATGTTAGGGGGAGGCCAGG 60.698 63.158 5.01 0.00 0.00 4.45
3316 3816 0.695803 AGATGTTAGGGGGAGGCCAG 60.696 60.000 5.01 0.00 0.00 4.85
3317 3817 0.988145 CAGATGTTAGGGGGAGGCCA 60.988 60.000 5.01 0.00 0.00 5.36
3318 3818 0.694444 TCAGATGTTAGGGGGAGGCC 60.694 60.000 0.00 0.00 0.00 5.19
3319 3819 1.213296 TTCAGATGTTAGGGGGAGGC 58.787 55.000 0.00 0.00 0.00 4.70
3320 3820 4.526438 AAATTCAGATGTTAGGGGGAGG 57.474 45.455 0.00 0.00 0.00 4.30
3321 3821 4.098501 GCAAAATTCAGATGTTAGGGGGAG 59.901 45.833 0.00 0.00 0.00 4.30
3322 3822 4.023291 GCAAAATTCAGATGTTAGGGGGA 58.977 43.478 0.00 0.00 0.00 4.81
3323 3823 4.026052 AGCAAAATTCAGATGTTAGGGGG 58.974 43.478 0.00 0.00 0.00 5.40
3324 3824 4.678840 GCAGCAAAATTCAGATGTTAGGGG 60.679 45.833 0.00 0.00 0.00 4.79
3325 3825 4.159135 AGCAGCAAAATTCAGATGTTAGGG 59.841 41.667 0.00 0.00 0.00 3.53
3326 3826 5.320549 AGCAGCAAAATTCAGATGTTAGG 57.679 39.130 0.00 0.00 0.00 2.69
3327 3827 8.404000 AGATTAGCAGCAAAATTCAGATGTTAG 58.596 33.333 0.00 0.00 0.00 2.34
3328 3828 8.186163 CAGATTAGCAGCAAAATTCAGATGTTA 58.814 33.333 0.00 0.00 0.00 2.41
3329 3829 7.033791 CAGATTAGCAGCAAAATTCAGATGTT 58.966 34.615 0.00 0.00 0.00 2.71
3330 3830 6.561614 CAGATTAGCAGCAAAATTCAGATGT 58.438 36.000 0.00 0.00 0.00 3.06
3331 3831 5.459107 GCAGATTAGCAGCAAAATTCAGATG 59.541 40.000 0.00 0.00 0.00 2.90
3332 3832 5.360144 AGCAGATTAGCAGCAAAATTCAGAT 59.640 36.000 0.00 0.00 36.85 2.90
3333 3833 4.703575 AGCAGATTAGCAGCAAAATTCAGA 59.296 37.500 0.00 0.00 36.85 3.27
3334 3834 4.995124 AGCAGATTAGCAGCAAAATTCAG 58.005 39.130 0.00 0.00 36.85 3.02
3335 3835 6.319405 TCATAGCAGATTAGCAGCAAAATTCA 59.681 34.615 0.00 0.00 36.85 2.57
3336 3836 6.732154 TCATAGCAGATTAGCAGCAAAATTC 58.268 36.000 0.00 0.00 36.85 2.17
3337 3837 6.704289 TCATAGCAGATTAGCAGCAAAATT 57.296 33.333 0.00 0.00 36.85 1.82
3338 3838 6.095860 TGTTCATAGCAGATTAGCAGCAAAAT 59.904 34.615 0.00 0.00 36.85 1.82
3339 3839 5.415389 TGTTCATAGCAGATTAGCAGCAAAA 59.585 36.000 0.00 0.00 36.85 2.44
3340 3840 4.943093 TGTTCATAGCAGATTAGCAGCAAA 59.057 37.500 0.00 0.00 36.85 3.68
3341 3841 4.516323 TGTTCATAGCAGATTAGCAGCAA 58.484 39.130 0.00 0.00 36.85 3.91
3342 3842 4.124970 CTGTTCATAGCAGATTAGCAGCA 58.875 43.478 0.00 0.00 36.12 4.41
3343 3843 4.025061 CACTGTTCATAGCAGATTAGCAGC 60.025 45.833 0.00 0.00 37.40 5.25
3344 3844 5.233902 GTCACTGTTCATAGCAGATTAGCAG 59.766 44.000 0.00 0.00 37.40 4.24
3345 3845 5.111989 GTCACTGTTCATAGCAGATTAGCA 58.888 41.667 0.00 0.00 37.40 3.49
3346 3846 5.111989 TGTCACTGTTCATAGCAGATTAGC 58.888 41.667 0.00 0.00 37.40 3.09
3347 3847 8.877808 TTATGTCACTGTTCATAGCAGATTAG 57.122 34.615 0.00 0.00 37.40 1.73
3348 3848 9.836864 AATTATGTCACTGTTCATAGCAGATTA 57.163 29.630 0.00 0.00 37.40 1.75
3349 3849 8.743085 AATTATGTCACTGTTCATAGCAGATT 57.257 30.769 0.00 0.40 37.40 2.40
3350 3850 9.486497 CTAATTATGTCACTGTTCATAGCAGAT 57.514 33.333 0.00 0.00 37.40 2.90
3351 3851 8.478066 ACTAATTATGTCACTGTTCATAGCAGA 58.522 33.333 0.00 0.00 37.40 4.26
3352 3852 8.654230 ACTAATTATGTCACTGTTCATAGCAG 57.346 34.615 0.00 0.00 39.67 4.24
3373 3873 9.618890 AGATTTTCAGCAGCAATAGATTACTAA 57.381 29.630 0.00 0.00 32.04 2.24
3375 3875 9.790344 ATAGATTTTCAGCAGCAATAGATTACT 57.210 29.630 0.00 0.00 0.00 2.24
3379 3879 9.745880 CAAAATAGATTTTCAGCAGCAATAGAT 57.254 29.630 0.00 0.00 37.86 1.98
3380 3880 7.703621 GCAAAATAGATTTTCAGCAGCAATAGA 59.296 33.333 0.00 0.00 37.86 1.98
3381 3881 7.705325 AGCAAAATAGATTTTCAGCAGCAATAG 59.295 33.333 10.77 0.00 37.86 1.73
3382 3882 7.549839 AGCAAAATAGATTTTCAGCAGCAATA 58.450 30.769 10.77 0.00 37.86 1.90
3383 3883 6.403878 AGCAAAATAGATTTTCAGCAGCAAT 58.596 32.000 10.77 0.00 37.86 3.56
3384 3884 5.786311 AGCAAAATAGATTTTCAGCAGCAA 58.214 33.333 10.77 0.00 37.86 3.91
3385 3885 5.395682 AGCAAAATAGATTTTCAGCAGCA 57.604 34.783 10.77 0.00 37.86 4.41
3386 3886 6.716898 AAAGCAAAATAGATTTTCAGCAGC 57.283 33.333 10.77 6.07 37.86 5.25
3387 3887 7.758528 AGCTAAAGCAAAATAGATTTTCAGCAG 59.241 33.333 4.54 3.73 45.16 4.24
3388 3888 7.605449 AGCTAAAGCAAAATAGATTTTCAGCA 58.395 30.769 4.54 0.00 45.16 4.41
3389 3889 8.378421 CAAGCTAAAGCAAAATAGATTTTCAGC 58.622 33.333 4.54 0.60 45.16 4.26
3390 3890 8.866956 CCAAGCTAAAGCAAAATAGATTTTCAG 58.133 33.333 4.54 0.00 45.16 3.02
3391 3891 7.331687 GCCAAGCTAAAGCAAAATAGATTTTCA 59.668 33.333 4.54 0.00 45.16 2.69
3392 3892 7.201556 GGCCAAGCTAAAGCAAAATAGATTTTC 60.202 37.037 0.00 0.00 45.16 2.29
3393 3893 6.595326 GGCCAAGCTAAAGCAAAATAGATTTT 59.405 34.615 0.00 0.00 45.16 1.82
3394 3894 6.108687 GGCCAAGCTAAAGCAAAATAGATTT 58.891 36.000 0.00 0.00 45.16 2.17
3395 3895 5.395657 GGGCCAAGCTAAAGCAAAATAGATT 60.396 40.000 4.39 0.00 45.16 2.40
3396 3896 4.100035 GGGCCAAGCTAAAGCAAAATAGAT 59.900 41.667 4.39 0.00 45.16 1.98
3397 3897 3.447229 GGGCCAAGCTAAAGCAAAATAGA 59.553 43.478 4.39 0.00 45.16 1.98
3398 3898 3.448660 AGGGCCAAGCTAAAGCAAAATAG 59.551 43.478 6.18 0.00 45.16 1.73
3399 3899 3.440127 AGGGCCAAGCTAAAGCAAAATA 58.560 40.909 6.18 0.00 45.16 1.40
3400 3900 2.234661 GAGGGCCAAGCTAAAGCAAAAT 59.765 45.455 6.18 0.00 45.16 1.82
3401 3901 1.618343 GAGGGCCAAGCTAAAGCAAAA 59.382 47.619 6.18 0.00 45.16 2.44
3402 3902 1.256812 GAGGGCCAAGCTAAAGCAAA 58.743 50.000 6.18 0.00 45.16 3.68
3403 3903 0.611896 GGAGGGCCAAGCTAAAGCAA 60.612 55.000 6.18 0.00 45.16 3.91
3404 3904 1.000896 GGAGGGCCAAGCTAAAGCA 60.001 57.895 6.18 0.00 45.16 3.91
3405 3905 1.754621 GGGAGGGCCAAGCTAAAGC 60.755 63.158 6.18 0.00 37.31 3.51
3406 3906 1.213296 TAGGGAGGGCCAAGCTAAAG 58.787 55.000 6.18 0.00 35.15 1.85
3407 3907 1.676248 TTAGGGAGGGCCAAGCTAAA 58.324 50.000 6.18 0.00 35.15 1.85
3408 3908 1.907240 ATTAGGGAGGGCCAAGCTAA 58.093 50.000 6.18 0.00 35.15 3.09
3409 3909 1.907240 AATTAGGGAGGGCCAAGCTA 58.093 50.000 6.18 0.00 35.15 3.32
3410 3910 1.010795 AAATTAGGGAGGGCCAAGCT 58.989 50.000 6.18 0.00 35.15 3.74
3411 3911 1.114627 CAAATTAGGGAGGGCCAAGC 58.885 55.000 6.18 0.00 35.15 4.01
3412 3912 2.532250 ACAAATTAGGGAGGGCCAAG 57.468 50.000 6.18 0.00 35.15 3.61
3413 3913 3.268034 AAACAAATTAGGGAGGGCCAA 57.732 42.857 6.18 0.00 35.15 4.52
3414 3914 3.268034 AAAACAAATTAGGGAGGGCCA 57.732 42.857 6.18 0.00 35.15 5.36
3415 3915 3.132289 GCTAAAACAAATTAGGGAGGGCC 59.868 47.826 0.00 0.00 34.20 5.80
3416 3916 3.767131 TGCTAAAACAAATTAGGGAGGGC 59.233 43.478 0.00 0.00 34.20 5.19
3417 3917 4.142160 GCTGCTAAAACAAATTAGGGAGGG 60.142 45.833 0.00 0.00 34.20 4.30
3418 3918 4.462483 TGCTGCTAAAACAAATTAGGGAGG 59.538 41.667 0.00 0.00 34.20 4.30
3419 3919 5.183904 AGTGCTGCTAAAACAAATTAGGGAG 59.816 40.000 0.00 0.00 34.20 4.30
3420 3920 5.076873 AGTGCTGCTAAAACAAATTAGGGA 58.923 37.500 0.00 0.00 34.20 4.20
3421 3921 5.391312 AGTGCTGCTAAAACAAATTAGGG 57.609 39.130 0.00 0.00 34.20 3.53
3422 3922 5.634859 CCAAGTGCTGCTAAAACAAATTAGG 59.365 40.000 0.00 0.00 34.20 2.69
3423 3923 5.119125 GCCAAGTGCTGCTAAAACAAATTAG 59.881 40.000 0.00 0.00 36.87 1.73
3424 3924 4.987912 GCCAAGTGCTGCTAAAACAAATTA 59.012 37.500 0.00 0.00 36.87 1.40
3425 3925 3.809279 GCCAAGTGCTGCTAAAACAAATT 59.191 39.130 0.00 0.00 36.87 1.82
3426 3926 3.392882 GCCAAGTGCTGCTAAAACAAAT 58.607 40.909 0.00 0.00 36.87 2.32
3427 3927 2.482839 GGCCAAGTGCTGCTAAAACAAA 60.483 45.455 0.00 0.00 40.92 2.83
3428 3928 1.068434 GGCCAAGTGCTGCTAAAACAA 59.932 47.619 0.00 0.00 40.92 2.83
3429 3929 0.673437 GGCCAAGTGCTGCTAAAACA 59.327 50.000 0.00 0.00 40.92 2.83
3430 3930 0.038251 GGGCCAAGTGCTGCTAAAAC 60.038 55.000 4.39 0.00 40.92 2.43
3431 3931 1.184970 GGGGCCAAGTGCTGCTAAAA 61.185 55.000 4.39 0.00 40.92 1.52
3432 3932 1.606313 GGGGCCAAGTGCTGCTAAA 60.606 57.895 4.39 0.00 40.92 1.85
3433 3933 2.035626 GGGGCCAAGTGCTGCTAA 59.964 61.111 4.39 0.00 40.92 3.09
3434 3934 4.047125 GGGGGCCAAGTGCTGCTA 62.047 66.667 4.39 0.00 40.92 3.49
3436 3936 2.861271 ATTAGGGGGCCAAGTGCTGC 62.861 60.000 4.39 0.00 40.92 5.25
3437 3937 0.550914 TATTAGGGGGCCAAGTGCTG 59.449 55.000 4.39 0.00 40.92 4.41
3438 3938 0.551396 GTATTAGGGGGCCAAGTGCT 59.449 55.000 4.39 0.00 40.92 4.40
3439 3939 0.257616 TGTATTAGGGGGCCAAGTGC 59.742 55.000 4.39 0.00 40.16 4.40
3440 3940 4.657814 ATATGTATTAGGGGGCCAAGTG 57.342 45.455 4.39 0.00 0.00 3.16
3441 3941 5.459094 GGAAATATGTATTAGGGGGCCAAGT 60.459 44.000 4.39 0.00 0.00 3.16
3442 3942 5.016831 GGAAATATGTATTAGGGGGCCAAG 58.983 45.833 4.39 0.00 0.00 3.61
3443 3943 4.672650 AGGAAATATGTATTAGGGGGCCAA 59.327 41.667 4.39 0.00 0.00 4.52
3444 3944 4.044065 CAGGAAATATGTATTAGGGGGCCA 59.956 45.833 4.39 0.00 0.00 5.36
3445 3945 4.569865 CCAGGAAATATGTATTAGGGGGCC 60.570 50.000 0.00 0.00 0.00 5.80
3446 3946 4.600062 CCAGGAAATATGTATTAGGGGGC 58.400 47.826 0.00 0.00 0.00 5.80
3447 3947 4.292306 AGCCAGGAAATATGTATTAGGGGG 59.708 45.833 0.00 0.00 0.00 5.40
3448 3948 5.501156 GAGCCAGGAAATATGTATTAGGGG 58.499 45.833 0.00 0.00 0.00 4.79
3449 3949 5.501156 GGAGCCAGGAAATATGTATTAGGG 58.499 45.833 0.00 0.00 0.00 3.53
3450 3950 5.178797 CGGAGCCAGGAAATATGTATTAGG 58.821 45.833 0.00 0.00 0.00 2.69
3469 3969 4.162690 GCCCTACCAGTGGCGGAG 62.163 72.222 17.51 9.09 38.00 4.63
3479 3979 2.598098 ATTTACACGGCCGCCCTACC 62.598 60.000 28.58 0.00 0.00 3.18
3480 3980 0.104671 TATTTACACGGCCGCCCTAC 59.895 55.000 28.58 0.00 0.00 3.18
3481 3981 0.104671 GTATTTACACGGCCGCCCTA 59.895 55.000 28.58 9.19 0.00 3.53
3482 3982 1.153309 GTATTTACACGGCCGCCCT 60.153 57.895 28.58 10.37 0.00 5.19
3483 3983 0.104671 TAGTATTTACACGGCCGCCC 59.895 55.000 28.58 3.86 0.00 6.13
3484 3984 1.494824 CTAGTATTTACACGGCCGCC 58.505 55.000 28.58 0.00 0.00 6.13
3485 3985 1.494824 CCTAGTATTTACACGGCCGC 58.505 55.000 28.58 5.95 0.00 6.53
3486 3986 1.410153 ACCCTAGTATTTACACGGCCG 59.590 52.381 26.86 26.86 0.00 6.13
3487 3987 3.548745 AACCCTAGTATTTACACGGCC 57.451 47.619 0.00 0.00 0.00 6.13
3494 3994 6.574859 CGTGGAGGACAAAACCCTAGTATTTA 60.575 42.308 0.00 0.00 33.36 1.40
3514 4014 1.600107 GAGGTACATTGGGCGTGGA 59.400 57.895 0.00 0.00 0.00 4.02
3517 4017 1.615424 AGGGAGGTACATTGGGCGT 60.615 57.895 0.00 0.00 0.00 5.68
3529 4029 0.690762 TTTTCTTCCGTGGAGGGAGG 59.309 55.000 0.00 0.00 46.25 4.30
3579 4226 0.256752 TCCAGACGGAGGGATTACGA 59.743 55.000 0.00 0.00 35.91 3.43
3580 4227 1.108776 TTCCAGACGGAGGGATTACG 58.891 55.000 0.00 0.00 44.10 3.18
3583 4230 5.388599 AAATATTTCCAGACGGAGGGATT 57.611 39.130 0.00 0.00 44.10 3.01
3585 4232 4.226394 TGAAAATATTTCCAGACGGAGGGA 59.774 41.667 0.10 0.00 44.10 4.20
3586 4233 4.523083 TGAAAATATTTCCAGACGGAGGG 58.477 43.478 0.10 0.00 44.10 4.30
3587 4234 6.699575 AATGAAAATATTTCCAGACGGAGG 57.300 37.500 0.10 0.00 44.10 4.30
3616 4263 5.585390 TCCGTCCGTACATCTCTTTTATTC 58.415 41.667 0.00 0.00 0.00 1.75
3617 4264 5.451520 CCTCCGTCCGTACATCTCTTTTATT 60.452 44.000 0.00 0.00 0.00 1.40
3618 4265 4.037684 CCTCCGTCCGTACATCTCTTTTAT 59.962 45.833 0.00 0.00 0.00 1.40
3619 4266 3.379372 CCTCCGTCCGTACATCTCTTTTA 59.621 47.826 0.00 0.00 0.00 1.52
3620 4267 2.165845 CCTCCGTCCGTACATCTCTTTT 59.834 50.000 0.00 0.00 0.00 2.27
3621 4268 1.749634 CCTCCGTCCGTACATCTCTTT 59.250 52.381 0.00 0.00 0.00 2.52
3622 4269 1.390565 CCTCCGTCCGTACATCTCTT 58.609 55.000 0.00 0.00 0.00 2.85
3623 4270 0.465824 CCCTCCGTCCGTACATCTCT 60.466 60.000 0.00 0.00 0.00 3.10
3624 4271 0.465097 TCCCTCCGTCCGTACATCTC 60.465 60.000 0.00 0.00 0.00 2.75
3625 4272 0.465824 CTCCCTCCGTCCGTACATCT 60.466 60.000 0.00 0.00 0.00 2.90
3626 4273 0.750911 ACTCCCTCCGTCCGTACATC 60.751 60.000 0.00 0.00 0.00 3.06
3627 4274 0.548031 TACTCCCTCCGTCCGTACAT 59.452 55.000 0.00 0.00 0.00 2.29
3628 4275 0.548031 ATACTCCCTCCGTCCGTACA 59.452 55.000 0.00 0.00 0.00 2.90
3629 4276 1.233919 GATACTCCCTCCGTCCGTAC 58.766 60.000 0.00 0.00 0.00 3.67
3630 4277 0.839277 TGATACTCCCTCCGTCCGTA 59.161 55.000 0.00 0.00 0.00 4.02
3631 4278 0.033796 TTGATACTCCCTCCGTCCGT 60.034 55.000 0.00 0.00 0.00 4.69
3632 4279 0.669077 CTTGATACTCCCTCCGTCCG 59.331 60.000 0.00 0.00 0.00 4.79
3633 4280 2.068834 TCTTGATACTCCCTCCGTCC 57.931 55.000 0.00 0.00 0.00 4.79
3634 4281 3.254657 CAGATCTTGATACTCCCTCCGTC 59.745 52.174 0.00 0.00 0.00 4.79
3635 4282 3.226777 CAGATCTTGATACTCCCTCCGT 58.773 50.000 0.00 0.00 0.00 4.69
3636 4283 2.029470 GCAGATCTTGATACTCCCTCCG 60.029 54.545 0.00 0.00 0.00 4.63
3637 4284 2.968574 TGCAGATCTTGATACTCCCTCC 59.031 50.000 0.00 0.00 0.00 4.30
3638 4285 3.551863 CGTGCAGATCTTGATACTCCCTC 60.552 52.174 0.00 0.00 0.00 4.30
3639 4286 2.363680 CGTGCAGATCTTGATACTCCCT 59.636 50.000 0.00 0.00 0.00 4.20
3640 4287 2.101582 ACGTGCAGATCTTGATACTCCC 59.898 50.000 0.00 0.00 0.00 4.30
3641 4288 3.181486 TGACGTGCAGATCTTGATACTCC 60.181 47.826 0.00 0.00 0.00 3.85
3642 4289 3.794028 GTGACGTGCAGATCTTGATACTC 59.206 47.826 0.00 0.00 0.00 2.59
3643 4290 3.445450 AGTGACGTGCAGATCTTGATACT 59.555 43.478 0.00 0.00 0.00 2.12
3650 4297 4.456280 TTATTGAGTGACGTGCAGATCT 57.544 40.909 0.00 0.00 0.00 2.75
3666 4313 3.614092 AGTGACCTGCAGACCATTATTG 58.386 45.455 17.39 0.00 0.00 1.90
3692 4369 2.712057 ATTTTCTTCTGCCGTGCAAG 57.288 45.000 0.00 0.00 38.41 4.01
3693 4370 4.941263 AGTATATTTTCTTCTGCCGTGCAA 59.059 37.500 0.00 0.00 38.41 4.08
3694 4371 4.332543 CAGTATATTTTCTTCTGCCGTGCA 59.667 41.667 0.00 0.00 36.92 4.57
3695 4372 4.786609 GCAGTATATTTTCTTCTGCCGTGC 60.787 45.833 0.00 0.00 43.55 5.34
3733 4410 2.238084 TTTCTAGCTGCCTCCTCTGA 57.762 50.000 0.00 0.00 0.00 3.27
3738 4415 2.426842 ACCATTTTCTAGCTGCCTCC 57.573 50.000 0.00 0.00 0.00 4.30
3740 4417 3.259123 CCAAAACCATTTTCTAGCTGCCT 59.741 43.478 0.00 0.00 0.00 4.75
3762 4439 1.298859 CCGTGGCCTACTTTGCTGTC 61.299 60.000 3.32 0.00 0.00 3.51
3765 4442 1.003718 GACCGTGGCCTACTTTGCT 60.004 57.895 3.32 0.00 0.00 3.91
3767 4444 1.549170 ACTAGACCGTGGCCTACTTTG 59.451 52.381 3.32 0.00 0.00 2.77
3781 4459 1.008329 AGCGCTACAGACGACTAGAC 58.992 55.000 8.99 0.00 0.00 2.59
3788 4466 1.011019 CGGAGTAGCGCTACAGACG 60.011 63.158 40.32 34.48 38.48 4.18
3911 4591 2.125147 ACACGGACATGGGCGATG 60.125 61.111 8.03 8.03 38.15 3.84
3982 4666 3.698382 GCTCGAGAGCGTGAATGG 58.302 61.111 18.75 0.00 45.29 3.16
4032 4716 2.039624 GGGGAGGGAGAGAGCACA 59.960 66.667 0.00 0.00 0.00 4.57
4050 4734 6.707440 TGGTTGACTTGATAAAAGCAAGAA 57.293 33.333 11.52 0.00 44.16 2.52
4060 4744 3.329225 TGGACACCATGGTTGACTTGATA 59.671 43.478 16.84 0.00 0.00 2.15
4061 4745 2.108075 TGGACACCATGGTTGACTTGAT 59.892 45.455 16.84 0.00 0.00 2.57
4498 5182 3.971702 GCCAGAGCCTGTGGGGTT 61.972 66.667 10.28 0.00 44.22 4.11
4560 5244 2.174360 CACTCAGGATCTCTCACCACA 58.826 52.381 0.00 0.00 0.00 4.17
4764 5450 3.257561 CTGTGCCCGATTCGAGCG 61.258 66.667 7.83 3.14 0.00 5.03
4775 5461 2.176273 CGCACCAGATAGCTGTGCC 61.176 63.158 21.54 10.29 41.70 5.01
4812 5506 3.955771 TTTTTGCTACGTCAACAGGTC 57.044 42.857 0.00 0.00 0.00 3.85
4847 5541 1.030457 CGATCTACCCGTAGCTTGGT 58.970 55.000 0.00 0.00 38.69 3.67
4966 5674 7.124599 ACTTGAATGGAAATCAATCATTGGCTA 59.875 33.333 0.00 0.00 35.44 3.93
4967 5675 5.943349 TGAATGGAAATCAATCATTGGCT 57.057 34.783 0.00 0.00 30.89 4.75
4968 5676 6.036735 CACTTGAATGGAAATCAATCATTGGC 59.963 38.462 0.00 0.00 35.44 4.52
4979 5687 2.489329 CTGTCGGCACTTGAATGGAAAT 59.511 45.455 0.00 0.00 0.00 2.17
5036 5746 8.901748 CAGTAACCATTTTATCTTGTTTTGTCG 58.098 33.333 0.00 0.00 0.00 4.35
5097 5807 1.599047 CGCCAGAAGGATGGACACT 59.401 57.895 0.00 0.00 43.57 3.55
5151 5861 0.317160 TGCCGGTGAAGACAGTGTAG 59.683 55.000 1.90 0.00 0.00 2.74
5175 5885 2.590007 AGCATCCGCGGCATCTTC 60.590 61.111 23.51 5.90 45.49 2.87
5214 5924 1.258445 TGAAGAGCTCGAAGGGGGAC 61.258 60.000 8.37 0.00 0.00 4.46
5321 6031 5.165676 ACTGTACAGCGTCGAATATTTGAA 58.834 37.500 22.90 0.00 0.00 2.69
5322 6032 4.740268 ACTGTACAGCGTCGAATATTTGA 58.260 39.130 22.90 0.88 0.00 2.69
5323 6033 5.513849 TGTACTGTACAGCGTCGAATATTTG 59.486 40.000 22.90 0.00 34.06 2.32
5342 6052 1.615883 CAGACACAGGTGAGCTGTACT 59.384 52.381 17.66 15.79 34.45 2.73
5394 6104 0.388520 TCATGTCCGACGTCTTGCTG 60.389 55.000 14.70 4.97 0.00 4.41
5735 6445 4.916293 GGATGGCGATGGCGAGCA 62.916 66.667 2.10 0.00 41.24 4.26
5865 6575 6.935167 AGGCCAGGAAATGTTAAGTTTTATG 58.065 36.000 5.01 0.00 0.00 1.90
5866 6576 8.658840 TTAGGCCAGGAAATGTTAAGTTTTAT 57.341 30.769 5.01 0.00 0.00 1.40
5867 6577 8.658840 ATTAGGCCAGGAAATGTTAAGTTTTA 57.341 30.769 5.01 0.00 0.00 1.52
5869 6579 6.154534 GGATTAGGCCAGGAAATGTTAAGTTT 59.845 38.462 5.01 0.00 0.00 2.66
5870 6580 5.656859 GGATTAGGCCAGGAAATGTTAAGTT 59.343 40.000 5.01 0.00 0.00 2.66
5873 6583 4.080243 TCGGATTAGGCCAGGAAATGTTAA 60.080 41.667 5.01 0.00 0.00 2.01
5878 6604 1.843851 TGTCGGATTAGGCCAGGAAAT 59.156 47.619 5.01 0.00 0.00 2.17
5912 6639 2.158957 GCTATTCCGTGAACATCCCTGA 60.159 50.000 0.00 0.00 0.00 3.86
5925 6652 3.117046 GTCTTTCCTCTTCGCTATTCCG 58.883 50.000 0.00 0.00 0.00 4.30
5943 6670 2.338015 CGCTGCCATTGCCTTGTCT 61.338 57.895 0.00 0.00 36.33 3.41
6097 6824 9.313118 GCGGGTGAAAGAATTTTGATTTATATT 57.687 29.630 0.00 0.00 39.27 1.28
6098 6825 8.474025 TGCGGGTGAAAGAATTTTGATTTATAT 58.526 29.630 0.00 0.00 39.27 0.86
6099 6826 7.831753 TGCGGGTGAAAGAATTTTGATTTATA 58.168 30.769 0.00 0.00 39.27 0.98
6100 6827 6.696411 TGCGGGTGAAAGAATTTTGATTTAT 58.304 32.000 0.00 0.00 39.27 1.40
6172 6899 2.076100 ACATACACAATGCCTCGTGTG 58.924 47.619 11.20 8.11 45.62 3.82
6174 6901 2.483877 ACAACATACACAATGCCTCGTG 59.516 45.455 0.00 0.00 39.39 4.35
6196 6923 4.697352 ACTGCCATTTGCTAGTTCTTACAG 59.303 41.667 0.00 0.00 42.00 2.74
6202 6929 1.398390 CCGACTGCCATTTGCTAGTTC 59.602 52.381 0.00 0.00 42.00 3.01
6203 6930 1.453155 CCGACTGCCATTTGCTAGTT 58.547 50.000 0.00 0.00 42.00 2.24
6204 6931 1.026718 GCCGACTGCCATTTGCTAGT 61.027 55.000 0.00 0.00 42.00 2.57
6284 7020 3.750639 TTCGTCTGACAAAAAGCGTTT 57.249 38.095 8.73 0.00 0.00 3.60
6286 7022 3.963383 AATTCGTCTGACAAAAAGCGT 57.037 38.095 8.73 0.00 0.00 5.07
6290 7026 4.797868 CACAGCAAATTCGTCTGACAAAAA 59.202 37.500 8.73 0.00 0.00 1.94
6336 7072 2.365095 ATCCCCCGTTCGATTCGAGC 62.365 60.000 12.29 12.29 37.14 5.03
6340 7076 2.480845 CACTAATCCCCCGTTCGATTC 58.519 52.381 0.00 0.00 31.33 2.52
6392 10161 5.395682 TTTGAAGCTGTATACACTACCGT 57.604 39.130 0.08 0.00 0.00 4.83
6412 10184 4.826274 TCAGAAATCGAGAGTGGGATTT 57.174 40.909 0.00 0.00 43.50 2.17
6437 10213 9.990360 TTGTACCGAAGCAGAAATGATTATATA 57.010 29.630 0.00 0.00 0.00 0.86
6447 10225 2.129607 GACGTTGTACCGAAGCAGAAA 58.870 47.619 0.00 0.00 0.00 2.52
6464 10242 5.119588 ACGTGTTATTGATGTGTTTAGGACG 59.880 40.000 0.00 0.00 0.00 4.79
6465 10243 6.476243 ACGTGTTATTGATGTGTTTAGGAC 57.524 37.500 0.00 0.00 0.00 3.85
6467 10245 6.959311 GCTAACGTGTTATTGATGTGTTTAGG 59.041 38.462 0.00 0.00 0.00 2.69
6543 10322 8.246180 ACTTATCACAAAGCATTTTGAATCGAT 58.754 29.630 5.51 0.00 45.21 3.59
6545 10324 7.801547 ACTTATCACAAAGCATTTTGAATCG 57.198 32.000 5.51 0.00 45.21 3.34
6565 10349 6.117488 TGTCGATCTCCTACACATGTACTTA 58.883 40.000 0.00 0.00 0.00 2.24
6566 10350 4.948004 TGTCGATCTCCTACACATGTACTT 59.052 41.667 0.00 0.00 0.00 2.24
6567 10351 4.524053 TGTCGATCTCCTACACATGTACT 58.476 43.478 0.00 0.00 0.00 2.73
6568 10352 4.895224 TGTCGATCTCCTACACATGTAC 57.105 45.455 0.00 0.00 0.00 2.90
6635 10426 2.806856 GAAGGCGCATCGTGCTCTG 61.807 63.158 10.83 0.00 42.25 3.35
6638 10429 2.124983 ATGAAGGCGCATCGTGCT 60.125 55.556 10.83 0.00 42.25 4.40
6672 10467 0.250467 ATGCAAGAGCCACGAACTGT 60.250 50.000 0.00 0.00 41.13 3.55
6738 10543 7.621102 CAGAAAATAAAAGCAAACACAAGGAC 58.379 34.615 0.00 0.00 0.00 3.85
6765 10570 6.544038 AATAGAAACCAAAAGCAAACATGC 57.456 33.333 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.