Multiple sequence alignment - TraesCS3A01G346000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3A01G346000
chr3A
100.000
3554
0
0
1
3554
595336713
595340266
0.000000e+00
6564.0
1
TraesCS3A01G346000
chr3A
100.000
49
0
0
3049
3097
595339712
595339760
1.360000e-14
91.6
2
TraesCS3A01G346000
chr3A
100.000
49
0
0
3000
3048
595339761
595339809
1.360000e-14
91.6
3
TraesCS3A01G346000
chr3D
89.571
3097
158
77
24
3051
452953073
452956073
0.000000e+00
3777.0
4
TraesCS3A01G346000
chr3B
87.138
2900
185
88
223
3048
595266954
595269739
0.000000e+00
3116.0
5
TraesCS3A01G346000
chr3B
91.481
270
19
3
3286
3554
595269963
595270229
5.610000e-98
368.0
6
TraesCS3A01G346000
chr3B
90.171
234
15
7
3049
3277
595269691
595269921
7.460000e-77
298.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3A01G346000
chr3A
595336713
595340266
3553
False
2249.066667
6564
100.000000
1
3554
3
chr3A.!!$F1
3553
1
TraesCS3A01G346000
chr3D
452953073
452956073
3000
False
3777.000000
3777
89.571000
24
3051
1
chr3D.!!$F1
3027
2
TraesCS3A01G346000
chr3B
595266954
595270229
3275
False
1260.666667
3116
89.596667
223
3554
3
chr3B.!!$F1
3331
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
676
697
0.391927
TACCCGCACCTTCAATTCCG
60.392
55.0
0.0
0.0
0.0
4.3
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2564
2669
0.036306
ACCGGCCTCGTTTCATCTTT
59.964
50.0
0.0
0.0
33.95
2.52
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
21
22
4.280789
AGGATATAGAGGGGAACACACA
57.719
45.455
0.00
0.00
0.00
3.72
22
23
4.832492
AGGATATAGAGGGGAACACACAT
58.168
43.478
0.00
0.00
0.00
3.21
39
40
0.810031
CATCCCTAAAGTCGCCACCG
60.810
60.000
0.00
0.00
0.00
4.94
61
62
1.966451
CGCAAAGGAGGGACACCAC
60.966
63.158
0.00
0.00
43.22
4.16
79
80
2.689034
AGGCAGCCCTACCCAGAC
60.689
66.667
8.22
0.00
40.58
3.51
144
145
1.596934
GGTGGTGGCGAGATGAAGA
59.403
57.895
0.00
0.00
0.00
2.87
147
148
1.248101
TGGTGGCGAGATGAAGACGA
61.248
55.000
0.00
0.00
0.00
4.20
189
190
0.784778
CGGCGCGATCTAGGATTTTC
59.215
55.000
12.10
0.00
0.00
2.29
199
200
1.206371
CTAGGATTTTCCCCGTGTCGT
59.794
52.381
0.00
0.00
37.19
4.34
213
214
1.043116
TGTCGTGAGGGAGGGCTATG
61.043
60.000
0.00
0.00
0.00
2.23
240
241
3.770040
GGTGCGGGGCATTTTCCC
61.770
66.667
0.00
0.00
41.91
3.97
274
275
2.095919
GTGGCACCACGTCAACTTATTC
60.096
50.000
6.29
0.00
37.19
1.75
284
285
7.879160
ACCACGTCAACTTATTCTGGTTAATAA
59.121
33.333
0.00
0.00
32.00
1.40
319
320
5.761234
AGTTAGTTTGTTCCGAGCAAATACA
59.239
36.000
12.79
0.60
38.00
2.29
346
347
1.470632
CGACATGTCAAGGCCTCTCTC
60.471
57.143
24.93
0.00
0.00
3.20
354
355
2.023984
TCAAGGCCTCTCTCATACCAGA
60.024
50.000
5.23
0.00
0.00
3.86
357
358
2.111384
GGCCTCTCTCATACCAGAACA
58.889
52.381
0.00
0.00
0.00
3.18
364
365
5.019470
TCTCTCATACCAGAACAGTGACAT
58.981
41.667
0.00
0.00
0.00
3.06
387
388
5.084519
TGTCTCCTGTACATAGTGGACTTT
58.915
41.667
0.00
0.00
30.83
2.66
432
433
1.418637
AGCAGAAGGTAAACCGAACCA
59.581
47.619
0.00
0.00
42.08
3.67
463
465
1.510480
GCTCTGTCCACAGTGTTGCC
61.510
60.000
6.61
0.00
44.12
4.52
517
519
1.378382
CACACGCATCAATCCCCCA
60.378
57.895
0.00
0.00
0.00
4.96
555
569
7.060864
GCATAATCTTACTCGAATCTAACGACC
59.939
40.741
0.00
0.00
35.88
4.79
612
628
3.304911
TCTCCATCACCTAGTCTCCTG
57.695
52.381
0.00
0.00
0.00
3.86
614
630
1.930204
TCCATCACCTAGTCTCCTGGA
59.070
52.381
0.00
0.00
0.00
3.86
676
697
0.391927
TACCCGCACCTTCAATTCCG
60.392
55.000
0.00
0.00
0.00
4.30
677
698
1.376683
CCCGCACCTTCAATTCCGA
60.377
57.895
0.00
0.00
0.00
4.55
678
699
1.369091
CCCGCACCTTCAATTCCGAG
61.369
60.000
0.00
0.00
0.00
4.63
679
700
1.425428
CGCACCTTCAATTCCGAGC
59.575
57.895
0.00
0.00
0.00
5.03
680
701
1.803289
GCACCTTCAATTCCGAGCC
59.197
57.895
0.00
0.00
0.00
4.70
732
753
0.521735
GCGTAAAACCTCTGCCAAGG
59.478
55.000
0.04
0.04
42.55
3.61
737
758
2.296945
AAACCTCTGCCAAGGCCACA
62.297
55.000
5.01
0.00
40.34
4.17
738
759
2.360852
CCTCTGCCAAGGCCACAG
60.361
66.667
5.01
7.16
41.09
3.66
739
760
2.360852
CTCTGCCAAGGCCACAGG
60.361
66.667
5.01
4.35
41.09
4.00
785
806
4.516135
CACATGCGAGCTGCTGCG
62.516
66.667
7.01
11.85
46.63
5.18
818
839
2.072973
TCCCCCATCTATTTCCCCATG
58.927
52.381
0.00
0.00
0.00
3.66
834
856
2.563261
CATGGATGGATGAGGTGAGG
57.437
55.000
0.00
0.00
0.00
3.86
889
914
1.583054
GACCCCTCGCAATCATACAC
58.417
55.000
0.00
0.00
0.00
2.90
924
950
3.749064
TGACGAGTGAGCGAGGCC
61.749
66.667
0.00
0.00
34.83
5.19
928
954
4.828925
GAGTGAGCGAGGCCAGGC
62.829
72.222
5.01
1.26
0.00
4.85
1039
1068
4.792648
GTCTGCGCGCTGCTCTCT
62.793
66.667
33.29
0.00
46.63
3.10
1040
1069
4.488992
TCTGCGCGCTGCTCTCTC
62.489
66.667
33.29
0.00
46.63
3.20
1041
1070
4.495336
CTGCGCGCTGCTCTCTCT
62.495
66.667
33.29
0.00
46.63
3.10
1042
1071
4.488992
TGCGCGCTGCTCTCTCTC
62.489
66.667
33.29
0.00
46.63
3.20
1043
1072
4.191950
GCGCGCTGCTCTCTCTCT
62.192
66.667
26.67
0.00
41.73
3.10
1044
1073
2.024588
CGCGCTGCTCTCTCTCTC
59.975
66.667
5.56
0.00
0.00
3.20
1045
1074
2.472059
CGCGCTGCTCTCTCTCTCT
61.472
63.158
5.56
0.00
0.00
3.10
1046
1075
1.356624
GCGCTGCTCTCTCTCTCTC
59.643
63.158
0.00
0.00
0.00
3.20
1047
1076
1.097547
GCGCTGCTCTCTCTCTCTCT
61.098
60.000
0.00
0.00
0.00
3.10
1048
1077
0.940126
CGCTGCTCTCTCTCTCTCTC
59.060
60.000
0.00
0.00
0.00
3.20
1049
1078
1.473965
CGCTGCTCTCTCTCTCTCTCT
60.474
57.143
0.00
0.00
0.00
3.10
1050
1079
2.216898
GCTGCTCTCTCTCTCTCTCTC
58.783
57.143
0.00
0.00
0.00
3.20
1051
1080
2.158842
GCTGCTCTCTCTCTCTCTCTCT
60.159
54.545
0.00
0.00
0.00
3.10
1066
1095
5.272402
TCTCTCTCTCTCTCTCTCTCTTCA
58.728
45.833
0.00
0.00
0.00
3.02
1067
1096
5.721480
TCTCTCTCTCTCTCTCTCTCTTCAA
59.279
44.000
0.00
0.00
0.00
2.69
1187
1220
3.334054
GGGGACTCAGGGCTGCTT
61.334
66.667
0.00
0.00
0.00
3.91
1188
1221
2.045536
GGGACTCAGGGCTGCTTG
60.046
66.667
0.00
0.00
0.00
4.01
1189
1222
2.749441
GGACTCAGGGCTGCTTGC
60.749
66.667
0.00
0.00
41.94
4.01
1209
1242
1.185618
TACAAGAGGCAGTGGCGACT
61.186
55.000
11.51
11.85
42.47
4.18
1223
1256
4.459089
GACTGGTGAGGCCGAGGC
62.459
72.222
5.37
5.37
41.21
4.70
1319
1372
1.835494
GGGGCTTAAAAGGGAGTGAC
58.165
55.000
0.00
0.00
0.00
3.67
1433
1486
3.414700
CCTGTGCTTCGTCGTGGC
61.415
66.667
0.00
0.00
0.00
5.01
1434
1487
3.414700
CTGTGCTTCGTCGTGGCC
61.415
66.667
0.00
0.00
0.00
5.36
1446
1499
4.131088
GTGGCCGTCGTCTCCCTC
62.131
72.222
0.00
0.00
0.00
4.30
1508
1561
0.905337
AGTGGGAGGAGTACTGTGGC
60.905
60.000
0.00
0.00
0.00
5.01
1511
1564
1.982938
GGAGGAGTACTGTGGCGGT
60.983
63.158
0.00
0.00
0.00
5.68
1545
1598
1.222115
ACGAACTCAGCCTGCGTTTC
61.222
55.000
1.03
0.00
0.00
2.78
1565
1618
1.623973
GCTCCTACGTGCGGTTGTTC
61.624
60.000
0.00
0.00
0.00
3.18
1588
1641
2.284952
CCTCGTTTTGGCAAGCTTTTTG
59.715
45.455
0.00
0.00
0.00
2.44
1614
1673
3.609175
CGTTTCCATTGATCGTGTGCTTT
60.609
43.478
0.00
0.00
0.00
3.51
1624
1683
1.658409
GTGTGCTTTGCGCTGGTTC
60.658
57.895
9.73
0.00
40.03
3.62
1664
1731
2.844281
GCATCTCTTCTGCGTGTTTTC
58.156
47.619
0.00
0.00
0.00
2.29
1683
1750
2.722094
TCCATGGAGGTTTATGTGTGC
58.278
47.619
11.44
0.00
39.02
4.57
1695
1762
5.149977
GTTTATGTGTGCTCTGCTTCTTTC
58.850
41.667
0.00
0.00
0.00
2.62
1732
1799
2.606725
CTGCTGATGCTAGTTCTTTCCG
59.393
50.000
0.00
0.00
40.48
4.30
1755
1822
4.142600
GCCTGCAATAAAACTGGAGTGTAG
60.143
45.833
0.00
0.00
30.80
2.74
1768
1835
5.363292
ACTGGAGTGTAGATAGAGTCTCGTA
59.637
44.000
0.00
0.00
38.42
3.43
1769
1836
5.599732
TGGAGTGTAGATAGAGTCTCGTAC
58.400
45.833
0.00
0.00
38.42
3.67
1770
1837
5.363292
TGGAGTGTAGATAGAGTCTCGTACT
59.637
44.000
0.00
0.00
42.80
2.73
1784
1851
0.240145
CGTACTCTCGTTGTGCCAGA
59.760
55.000
0.00
0.00
0.00
3.86
1795
1862
1.737838
TGTGCCAGATTAAAGCCGAG
58.262
50.000
0.00
0.00
0.00
4.63
1801
1868
3.873910
CCAGATTAAAGCCGAGGAGAAA
58.126
45.455
0.00
0.00
0.00
2.52
1802
1869
3.623510
CCAGATTAAAGCCGAGGAGAAAC
59.376
47.826
0.00
0.00
0.00
2.78
1803
1870
4.253685
CAGATTAAAGCCGAGGAGAAACA
58.746
43.478
0.00
0.00
0.00
2.83
1804
1871
4.331168
CAGATTAAAGCCGAGGAGAAACAG
59.669
45.833
0.00
0.00
0.00
3.16
1808
1875
2.171341
AGCCGAGGAGAAACAGAAAC
57.829
50.000
0.00
0.00
0.00
2.78
1823
1894
6.780457
AACAGAAACAATATGGATCCTTGG
57.220
37.500
14.23
4.01
0.00
3.61
1842
1913
8.339344
TCCTTGGTATACATTGCATTATCATG
57.661
34.615
5.01
0.00
0.00
3.07
1875
1946
2.291153
ACTTTAGACCATGCATGCCTGT
60.291
45.455
21.69
13.75
0.00
4.00
1903
1974
4.330074
GTGAAATCACTCTGTCATAACCCG
59.670
45.833
6.30
0.00
43.25
5.28
1947
2018
2.158957
ACTTTTGGAGACGAACAGCAGA
60.159
45.455
0.00
0.00
31.96
4.26
2004
2075
4.168760
ACATTTGCTAAAATTCGCAGCTC
58.831
39.130
7.23
0.00
37.46
4.09
2042
2115
1.176527
CCGGGGTTTCACGTAGACTA
58.823
55.000
0.00
0.00
0.00
2.59
2134
2217
4.132441
ATGCCCCATGCGCAAACG
62.132
61.111
17.11
5.94
45.60
3.60
2136
2219
4.481112
GCCCCATGCGCAAACGAG
62.481
66.667
17.11
3.52
43.93
4.18
2163
2247
2.677003
CCGCCAAAGTAGGTGCACG
61.677
63.158
11.45
0.00
37.85
5.34
2239
2323
3.785859
GGCCATCTCCGACAGCCA
61.786
66.667
0.00
0.00
43.32
4.75
2324
2429
5.009010
GCACCATCTCATCCGTTGATTAATT
59.991
40.000
0.00
0.00
32.72
1.40
2343
2448
2.234300
TCGTTTCACCTTCACAGGAC
57.766
50.000
0.00
0.00
44.19
3.85
2350
2455
1.052124
ACCTTCACAGGACCGGTCAA
61.052
55.000
34.40
19.08
44.19
3.18
2575
2680
0.789383
GGCGACGCAAAGATGAAACG
60.789
55.000
23.09
0.00
0.00
3.60
2584
2689
0.673644
AAGATGAAACGAGGCCGGTG
60.674
55.000
1.90
0.00
40.78
4.94
2674
2779
1.729484
CGCAAGCTGACGAACGAGA
60.729
57.895
2.59
0.00
0.00
4.04
2675
2780
1.669158
CGCAAGCTGACGAACGAGAG
61.669
60.000
2.59
0.00
0.00
3.20
2677
2782
0.664466
CAAGCTGACGAACGAGAGCA
60.664
55.000
18.14
5.05
33.67
4.26
2678
2783
0.664767
AAGCTGACGAACGAGAGCAC
60.665
55.000
18.14
0.00
33.67
4.40
2689
2803
0.947244
CGAGAGCACCCATTATTGCC
59.053
55.000
0.00
0.00
39.75
4.52
2969
3095
0.108186
TGCACGTGTCCAGATCATCC
60.108
55.000
18.38
0.00
0.00
3.51
2970
3096
0.108186
GCACGTGTCCAGATCATCCA
60.108
55.000
18.38
0.00
0.00
3.41
2971
3097
1.473965
GCACGTGTCCAGATCATCCAT
60.474
52.381
18.38
0.00
0.00
3.41
2972
3098
2.477825
CACGTGTCCAGATCATCCATC
58.522
52.381
7.58
0.00
0.00
3.51
2995
3121
9.717892
CATCTGTTGATATGATTCTCTGTTTTG
57.282
33.333
0.00
0.00
0.00
2.44
3006
3146
5.479716
TTCTCTGTTTTGTTTCTTCCGTC
57.520
39.130
0.00
0.00
0.00
4.79
3010
3150
5.054477
TCTGTTTTGTTTCTTCCGTCTAGG
58.946
41.667
0.00
0.00
42.97
3.02
3045
3185
0.321346
TGCGCTGGTGATCTTCTTGA
59.679
50.000
9.73
0.00
0.00
3.02
3048
3188
1.743996
GCTGGTGATCTTCTTGACCC
58.256
55.000
0.00
0.00
0.00
4.46
3049
3189
1.280421
GCTGGTGATCTTCTTGACCCT
59.720
52.381
0.00
0.00
0.00
4.34
3051
3191
3.604582
CTGGTGATCTTCTTGACCCTTC
58.395
50.000
0.00
0.00
0.00
3.46
3052
3192
2.305927
TGGTGATCTTCTTGACCCTTCC
59.694
50.000
0.00
0.00
0.00
3.46
3053
3193
2.622436
GTGATCTTCTTGACCCTTCCG
58.378
52.381
0.00
0.00
0.00
4.30
3054
3194
2.028020
GTGATCTTCTTGACCCTTCCGT
60.028
50.000
0.00
0.00
0.00
4.69
3055
3195
2.233922
TGATCTTCTTGACCCTTCCGTC
59.766
50.000
0.00
0.00
0.00
4.79
3056
3196
2.011122
TCTTCTTGACCCTTCCGTCT
57.989
50.000
0.00
0.00
33.70
4.18
3057
3197
3.165087
TCTTCTTGACCCTTCCGTCTA
57.835
47.619
0.00
0.00
33.70
2.59
3058
3198
3.090037
TCTTCTTGACCCTTCCGTCTAG
58.910
50.000
0.00
0.00
37.08
2.43
3059
3199
1.848652
TCTTGACCCTTCCGTCTAGG
58.151
55.000
0.00
0.00
36.60
3.02
3072
3212
5.630415
TCCGTCTAGGATTTTGATCCATT
57.370
39.130
8.06
0.00
45.98
3.16
3073
3213
6.001449
TCCGTCTAGGATTTTGATCCATTT
57.999
37.500
8.06
0.00
45.98
2.32
3074
3214
6.423182
TCCGTCTAGGATTTTGATCCATTTT
58.577
36.000
8.06
0.00
45.98
1.82
3075
3215
6.889722
TCCGTCTAGGATTTTGATCCATTTTT
59.110
34.615
8.06
0.00
45.98
1.94
3076
3216
6.974622
CCGTCTAGGATTTTGATCCATTTTTG
59.025
38.462
8.06
0.00
45.00
2.44
3077
3217
6.473455
CGTCTAGGATTTTGATCCATTTTTGC
59.527
38.462
8.06
0.00
43.14
3.68
3078
3218
6.473455
GTCTAGGATTTTGATCCATTTTTGCG
59.527
38.462
8.06
0.00
43.14
4.85
3079
3219
3.934579
AGGATTTTGATCCATTTTTGCGC
59.065
39.130
0.00
0.00
43.14
6.09
3080
3220
3.934579
GGATTTTGATCCATTTTTGCGCT
59.065
39.130
9.73
0.00
40.43
5.92
3081
3221
4.201744
GGATTTTGATCCATTTTTGCGCTG
60.202
41.667
9.73
0.00
40.43
5.18
3082
3222
2.367030
TTGATCCATTTTTGCGCTGG
57.633
45.000
9.73
7.76
0.00
4.85
3083
3223
1.255882
TGATCCATTTTTGCGCTGGT
58.744
45.000
9.73
0.00
0.00
4.00
3084
3224
1.067706
TGATCCATTTTTGCGCTGGTG
60.068
47.619
9.73
0.22
0.00
4.17
3085
3225
1.202114
GATCCATTTTTGCGCTGGTGA
59.798
47.619
9.73
0.00
0.00
4.02
3086
3226
1.255882
TCCATTTTTGCGCTGGTGAT
58.744
45.000
9.73
0.00
0.00
3.06
3087
3227
1.202114
TCCATTTTTGCGCTGGTGATC
59.798
47.619
9.73
0.00
0.00
2.92
3088
3228
1.203052
CCATTTTTGCGCTGGTGATCT
59.797
47.619
9.73
0.00
0.00
2.75
3089
3229
2.353011
CCATTTTTGCGCTGGTGATCTT
60.353
45.455
9.73
0.00
0.00
2.40
3090
3230
2.704725
TTTTTGCGCTGGTGATCTTC
57.295
45.000
9.73
0.00
0.00
2.87
3091
3231
1.896220
TTTTGCGCTGGTGATCTTCT
58.104
45.000
9.73
0.00
0.00
2.85
3092
3232
1.896220
TTTGCGCTGGTGATCTTCTT
58.104
45.000
9.73
0.00
0.00
2.52
3093
3233
1.159285
TTGCGCTGGTGATCTTCTTG
58.841
50.000
9.73
0.00
0.00
3.02
3115
3255
1.721487
GCATGGCGTGTGATGTACC
59.279
57.895
8.75
0.00
0.00
3.34
3116
3256
2.005995
CATGGCGTGTGATGTACCG
58.994
57.895
0.00
0.00
0.00
4.02
3117
3257
0.739462
CATGGCGTGTGATGTACCGT
60.739
55.000
0.00
0.00
0.00
4.83
3119
3259
0.602060
TGGCGTGTGATGTACCGTAA
59.398
50.000
0.00
0.00
0.00
3.18
3120
3260
0.994263
GGCGTGTGATGTACCGTAAC
59.006
55.000
0.00
0.00
0.00
2.50
3121
3261
1.669502
GGCGTGTGATGTACCGTAACA
60.670
52.381
0.00
0.00
0.00
2.41
3122
3262
1.387756
GCGTGTGATGTACCGTAACAC
59.612
52.381
6.09
6.09
38.18
3.32
3123
3263
2.923605
GCGTGTGATGTACCGTAACACT
60.924
50.000
11.93
0.00
39.14
3.55
3124
3264
2.912967
CGTGTGATGTACCGTAACACTC
59.087
50.000
11.93
6.68
39.14
3.51
3125
3265
3.248266
GTGTGATGTACCGTAACACTCC
58.752
50.000
8.16
0.00
38.44
3.85
3126
3266
2.892215
TGTGATGTACCGTAACACTCCA
59.108
45.455
0.00
0.00
33.41
3.86
3127
3267
3.248266
GTGATGTACCGTAACACTCCAC
58.752
50.000
0.00
0.00
30.75
4.02
3128
3268
2.095110
TGATGTACCGTAACACTCCACG
60.095
50.000
0.00
0.00
37.89
4.94
3250
3390
4.568956
ACGATGTGTCAAATGTGATCTGA
58.431
39.130
0.00
0.00
35.80
3.27
3254
3394
4.959723
TGTGTCAAATGTGATCTGAGTGA
58.040
39.130
0.00
0.00
35.80
3.41
3277
3420
9.062524
GTGATCTGTGATCTATGACTACTAACT
57.937
37.037
8.71
0.00
0.00
2.24
3282
3425
9.938670
CTGTGATCTATGACTACTAACTAACAC
57.061
37.037
0.00
0.00
0.00
3.32
3283
3426
9.457436
TGTGATCTATGACTACTAACTAACACA
57.543
33.333
0.00
0.00
0.00
3.72
3311
3487
5.808042
ATCACTGCTCATGTGTGTAATTC
57.192
39.130
0.00
0.00
36.83
2.17
3324
3500
5.048364
TGTGTGTAATTCTGTGTATTTGGGC
60.048
40.000
0.00
0.00
0.00
5.36
3348
3524
3.243873
TGAATTATCGCAGGTAGAGGCAG
60.244
47.826
0.00
0.00
0.00
4.85
3429
3606
2.662700
GTAAGCAGGTCGATGTATCCG
58.337
52.381
0.00
0.00
0.00
4.18
3434
3611
0.111832
AGGTCGATGTATCCGCCCTA
59.888
55.000
0.00
0.00
0.00
3.53
3449
3626
2.417107
CGCCCTATTGATGCAAAGCAAA
60.417
45.455
0.00
0.00
43.62
3.68
3450
3627
3.598299
GCCCTATTGATGCAAAGCAAAA
58.402
40.909
0.00
0.00
43.62
2.44
3451
3628
3.619929
GCCCTATTGATGCAAAGCAAAAG
59.380
43.478
0.00
0.00
43.62
2.27
3460
3637
6.392354
TGATGCAAAGCAAAAGAATCTTAGG
58.608
36.000
0.00
0.00
43.62
2.69
3471
3648
7.926018
GCAAAAGAATCTTAGGAAAAGTGGAAA
59.074
33.333
0.00
0.00
0.00
3.13
3472
3649
9.468532
CAAAAGAATCTTAGGAAAAGTGGAAAG
57.531
33.333
0.00
0.00
0.00
2.62
3475
3652
5.966742
ATCTTAGGAAAAGTGGAAAGCAC
57.033
39.130
0.00
0.00
0.00
4.40
3482
3659
3.801114
AAAGTGGAAAGCACAGGTTTC
57.199
42.857
11.94
11.94
45.60
2.78
3487
3664
3.476552
TGGAAAGCACAGGTTTCTACTG
58.523
45.455
17.73
0.00
45.62
2.74
3500
3677
5.593095
AGGTTTCTACTGTGAAAAGGGTTTC
59.407
40.000
6.88
0.00
43.04
2.78
3522
3699
7.421530
TTCACAACCTCTTAAAAATCTCTCG
57.578
36.000
0.00
0.00
0.00
4.04
3526
3703
4.508662
ACCTCTTAAAAATCTCTCGGCTG
58.491
43.478
0.00
0.00
0.00
4.85
3544
3721
4.139038
GGCTGTAAAACCCTTGTCTTACA
58.861
43.478
0.00
0.00
34.14
2.41
3545
3722
4.023450
GGCTGTAAAACCCTTGTCTTACAC
60.023
45.833
0.00
0.00
32.38
2.90
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
4.280789
TGTGTGTTCCCCTCTATATCCT
57.719
45.455
0.00
0.00
0.00
3.24
3
4
3.910627
GGGATGTGTGTTCCCCTCTATAT
59.089
47.826
0.00
0.00
46.20
0.86
4
5
3.314693
GGGATGTGTGTTCCCCTCTATA
58.685
50.000
0.00
0.00
46.20
1.31
5
6
2.127708
GGGATGTGTGTTCCCCTCTAT
58.872
52.381
0.00
0.00
46.20
1.98
6
7
1.580059
GGGATGTGTGTTCCCCTCTA
58.420
55.000
0.00
0.00
46.20
2.43
7
8
2.387952
GGGATGTGTGTTCCCCTCT
58.612
57.895
0.00
0.00
46.20
3.69
12
13
3.000727
CGACTTTAGGGATGTGTGTTCC
58.999
50.000
0.00
0.00
0.00
3.62
13
14
2.415512
GCGACTTTAGGGATGTGTGTTC
59.584
50.000
0.00
0.00
0.00
3.18
14
15
2.423577
GCGACTTTAGGGATGTGTGTT
58.576
47.619
0.00
0.00
0.00
3.32
15
16
1.338769
GGCGACTTTAGGGATGTGTGT
60.339
52.381
0.00
0.00
0.00
3.72
16
17
1.338674
TGGCGACTTTAGGGATGTGTG
60.339
52.381
0.00
0.00
0.00
3.82
17
18
0.981183
TGGCGACTTTAGGGATGTGT
59.019
50.000
0.00
0.00
0.00
3.72
18
19
1.369625
GTGGCGACTTTAGGGATGTG
58.630
55.000
0.00
0.00
0.00
3.21
19
20
0.252197
GGTGGCGACTTTAGGGATGT
59.748
55.000
0.00
0.00
0.00
3.06
20
21
0.810031
CGGTGGCGACTTTAGGGATG
60.810
60.000
0.00
0.00
0.00
3.51
21
22
1.262640
ACGGTGGCGACTTTAGGGAT
61.263
55.000
0.00
0.00
0.00
3.85
22
23
1.880819
GACGGTGGCGACTTTAGGGA
61.881
60.000
0.00
0.00
0.00
4.20
39
40
3.119096
GTCCCTCCTTTGCGCGAC
61.119
66.667
12.10
0.88
0.00
5.19
61
62
2.688666
TCTGGGTAGGGCTGCCTG
60.689
66.667
19.68
0.98
35.54
4.85
144
145
0.325390
CTACCTCCCCTTCCCTTCGT
60.325
60.000
0.00
0.00
0.00
3.85
147
148
0.621862
CTGCTACCTCCCCTTCCCTT
60.622
60.000
0.00
0.00
0.00
3.95
176
177
3.729966
GACACGGGGAAAATCCTAGATC
58.270
50.000
0.00
0.00
36.57
2.75
189
190
3.760035
CTCCCTCACGACACGGGG
61.760
72.222
0.00
0.00
38.55
5.73
199
200
2.844362
CCGCATAGCCCTCCCTCA
60.844
66.667
0.00
0.00
0.00
3.86
221
222
3.770040
GAAAATGCCCCGCACCCC
61.770
66.667
0.00
0.00
43.04
4.95
222
223
3.770040
GGAAAATGCCCCGCACCC
61.770
66.667
0.00
0.00
43.04
4.61
223
224
3.770040
GGGAAAATGCCCCGCACC
61.770
66.667
0.00
0.00
43.04
5.01
274
275
9.490663
CTAACTTCTCGCAAAATTATTAACCAG
57.509
33.333
0.00
0.00
0.00
4.00
284
285
6.206498
GGAACAAACTAACTTCTCGCAAAAT
58.794
36.000
0.00
0.00
0.00
1.82
319
320
4.079253
AGGCCTTGACATGTCGTATTTTT
58.921
39.130
20.54
1.42
0.00
1.94
346
347
4.825422
AGACATGTCACTGTTCTGGTATG
58.175
43.478
27.02
0.00
0.00
2.39
354
355
3.641436
TGTACAGGAGACATGTCACTGTT
59.359
43.478
38.13
28.12
42.95
3.16
357
358
5.126222
CACTATGTACAGGAGACATGTCACT
59.874
44.000
27.02
20.53
38.03
3.41
364
365
4.317530
AGTCCACTATGTACAGGAGACA
57.682
45.455
13.15
0.00
0.00
3.41
612
628
1.200716
TGTCACAATCTACCGTCGTCC
59.799
52.381
0.00
0.00
0.00
4.79
614
630
1.884579
ACTGTCACAATCTACCGTCGT
59.115
47.619
0.00
0.00
0.00
4.34
740
761
2.676471
CCCGGAAAAGCCTGTGGG
60.676
66.667
0.73
0.00
0.00
4.61
741
762
2.676471
CCCCGGAAAAGCCTGTGG
60.676
66.667
0.73
0.00
0.00
4.17
742
763
1.675641
CTCCCCGGAAAAGCCTGTG
60.676
63.158
0.73
0.00
0.00
3.66
743
764
2.757077
CTCCCCGGAAAAGCCTGT
59.243
61.111
0.73
0.00
0.00
4.00
744
765
2.751837
GCTCCCCGGAAAAGCCTG
60.752
66.667
0.73
0.00
0.00
4.85
791
812
4.892291
TAGATGGGGGACGGGGGC
62.892
72.222
0.00
0.00
0.00
5.80
818
839
1.694696
GTACCCTCACCTCATCCATCC
59.305
57.143
0.00
0.00
0.00
3.51
889
914
1.816835
TCACCTCAGTACGCCTAGTTG
59.183
52.381
0.00
0.00
0.00
3.16
924
950
4.907034
CGTCGTCCGATCGGCCTG
62.907
72.222
29.62
19.79
39.56
4.85
955
981
1.140252
AGTCTACCAACACCTTTGCGT
59.860
47.619
0.00
0.00
0.00
5.24
1034
1063
5.139727
AGAGAGAGAGAGAGAGAGAGAGAG
58.860
50.000
0.00
0.00
0.00
3.20
1035
1064
5.103728
AGAGAGAGAGAGAGAGAGAGAGAGA
60.104
48.000
0.00
0.00
0.00
3.10
1036
1065
5.139727
AGAGAGAGAGAGAGAGAGAGAGAG
58.860
50.000
0.00
0.00
0.00
3.20
1037
1066
5.103728
AGAGAGAGAGAGAGAGAGAGAGAGA
60.104
48.000
0.00
0.00
0.00
3.10
1038
1067
5.139727
AGAGAGAGAGAGAGAGAGAGAGAG
58.860
50.000
0.00
0.00
0.00
3.20
1039
1068
5.103728
AGAGAGAGAGAGAGAGAGAGAGAGA
60.104
48.000
0.00
0.00
0.00
3.10
1040
1069
5.139727
AGAGAGAGAGAGAGAGAGAGAGAG
58.860
50.000
0.00
0.00
0.00
3.20
1041
1070
5.136068
AGAGAGAGAGAGAGAGAGAGAGA
57.864
47.826
0.00
0.00
0.00
3.10
1042
1071
5.362143
TGAAGAGAGAGAGAGAGAGAGAGAG
59.638
48.000
0.00
0.00
0.00
3.20
1043
1072
5.272402
TGAAGAGAGAGAGAGAGAGAGAGA
58.728
45.833
0.00
0.00
0.00
3.10
1044
1073
5.604758
TGAAGAGAGAGAGAGAGAGAGAG
57.395
47.826
0.00
0.00
0.00
3.20
1045
1074
5.627735
GCTTGAAGAGAGAGAGAGAGAGAGA
60.628
48.000
0.00
0.00
0.00
3.10
1046
1075
4.574013
GCTTGAAGAGAGAGAGAGAGAGAG
59.426
50.000
0.00
0.00
0.00
3.20
1047
1076
4.517285
GCTTGAAGAGAGAGAGAGAGAGA
58.483
47.826
0.00
0.00
0.00
3.10
1048
1077
3.629398
GGCTTGAAGAGAGAGAGAGAGAG
59.371
52.174
0.00
0.00
0.00
3.20
1049
1078
3.620488
GGCTTGAAGAGAGAGAGAGAGA
58.380
50.000
0.00
0.00
0.00
3.10
1050
1079
2.689983
GGGCTTGAAGAGAGAGAGAGAG
59.310
54.545
0.00
0.00
0.00
3.20
1051
1080
2.042297
TGGGCTTGAAGAGAGAGAGAGA
59.958
50.000
0.00
0.00
0.00
3.10
1066
1095
2.189676
TGGAATTGAATGCATGGGCTT
58.810
42.857
0.00
0.00
41.91
4.35
1067
1096
1.868713
TGGAATTGAATGCATGGGCT
58.131
45.000
0.00
0.00
41.91
5.19
1141
1174
1.213013
CTGTAGCGGCGTCAGAACT
59.787
57.895
17.71
5.55
0.00
3.01
1143
1176
1.080772
CACTGTAGCGGCGTCAGAA
60.081
57.895
25.22
4.16
33.93
3.02
1171
1204
2.045536
CAAGCAGCCCTGAGTCCC
60.046
66.667
0.00
0.00
0.00
4.46
1172
1205
2.749441
GCAAGCAGCCCTGAGTCC
60.749
66.667
0.00
0.00
37.23
3.85
1181
1214
0.957395
TGCCTCTTGTAGCAAGCAGC
60.957
55.000
12.67
12.67
46.19
5.25
1182
1215
1.085091
CTGCCTCTTGTAGCAAGCAG
58.915
55.000
4.16
5.79
41.43
4.24
1183
1216
0.397941
ACTGCCTCTTGTAGCAAGCA
59.602
50.000
4.16
0.12
38.82
3.91
1184
1217
0.801251
CACTGCCTCTTGTAGCAAGC
59.199
55.000
4.16
0.00
38.82
4.01
1185
1218
1.446907
CCACTGCCTCTTGTAGCAAG
58.553
55.000
2.71
2.71
38.82
4.01
1186
1219
0.606401
GCCACTGCCTCTTGTAGCAA
60.606
55.000
0.00
0.00
38.82
3.91
1187
1220
1.003355
GCCACTGCCTCTTGTAGCA
60.003
57.895
0.00
0.00
37.46
3.49
1188
1221
2.103042
CGCCACTGCCTCTTGTAGC
61.103
63.158
0.00
0.00
0.00
3.58
1189
1222
0.737715
GTCGCCACTGCCTCTTGTAG
60.738
60.000
0.00
0.00
0.00
2.74
1319
1372
1.970114
CCTGCAGCAGAACCACCAG
60.970
63.158
24.90
0.00
32.44
4.00
1433
1486
2.752238
AGCAGAGGGAGACGACGG
60.752
66.667
0.00
0.00
0.00
4.79
1434
1487
2.487428
CAGCAGAGGGAGACGACG
59.513
66.667
0.00
0.00
0.00
5.12
1435
1488
2.183046
GCAGCAGAGGGAGACGAC
59.817
66.667
0.00
0.00
0.00
4.34
1484
1537
0.616111
AGTACTCCTCCCACTGCAGG
60.616
60.000
19.93
6.95
0.00
4.85
1565
1618
1.463553
AAGCTTGCCAAAACGAGGGG
61.464
55.000
0.00
0.00
0.00
4.79
1588
1641
2.482721
ACACGATCAATGGAAACGAACC
59.517
45.455
6.98
0.00
33.40
3.62
1660
1727
4.021544
GCACACATAAACCTCCATGGAAAA
60.022
41.667
17.00
0.00
39.71
2.29
1664
1731
2.684881
GAGCACACATAAACCTCCATGG
59.315
50.000
4.97
4.97
42.93
3.66
1683
1750
0.248843
AGGGCGAGAAAGAAGCAGAG
59.751
55.000
0.00
0.00
0.00
3.35
1695
1762
1.141449
CAGCAGAAGAGAGGGCGAG
59.859
63.158
0.00
0.00
0.00
5.03
1732
1799
2.558359
ACACTCCAGTTTTATTGCAGGC
59.442
45.455
0.00
0.00
0.00
4.85
1769
1836
3.181516
GCTTTAATCTGGCACAACGAGAG
60.182
47.826
0.00
0.00
38.70
3.20
1770
1837
2.742053
GCTTTAATCTGGCACAACGAGA
59.258
45.455
0.00
0.00
38.70
4.04
1771
1838
2.159517
GGCTTTAATCTGGCACAACGAG
60.160
50.000
0.00
0.00
38.70
4.18
1772
1839
1.810151
GGCTTTAATCTGGCACAACGA
59.190
47.619
0.00
0.00
38.70
3.85
1773
1840
1.465689
CGGCTTTAATCTGGCACAACG
60.466
52.381
0.00
0.00
38.70
4.10
1774
1841
1.810151
TCGGCTTTAATCTGGCACAAC
59.190
47.619
0.00
0.00
38.70
3.32
1775
1842
2.083774
CTCGGCTTTAATCTGGCACAA
58.916
47.619
0.00
0.00
38.70
3.33
1784
1851
4.553330
TCTGTTTCTCCTCGGCTTTAAT
57.447
40.909
0.00
0.00
0.00
1.40
1795
1862
6.830838
AGGATCCATATTGTTTCTGTTTCTCC
59.169
38.462
15.82
0.00
0.00
3.71
1801
1868
5.831103
ACCAAGGATCCATATTGTTTCTGT
58.169
37.500
15.82
0.35
0.00
3.41
1802
1869
9.003658
GTATACCAAGGATCCATATTGTTTCTG
57.996
37.037
15.82
0.00
0.00
3.02
1803
1870
8.723365
TGTATACCAAGGATCCATATTGTTTCT
58.277
33.333
15.82
0.00
0.00
2.52
1804
1871
8.918202
TGTATACCAAGGATCCATATTGTTTC
57.082
34.615
15.82
0.00
0.00
2.78
1808
1875
7.394077
TGCAATGTATACCAAGGATCCATATTG
59.606
37.037
15.82
11.95
0.00
1.90
1823
1894
8.702438
GCCAAAACATGATAATGCAATGTATAC
58.298
33.333
0.00
0.00
0.00
1.47
1842
1913
6.612306
CATGGTCTAAAGTCTAAGCCAAAAC
58.388
40.000
0.00
0.00
0.00
2.43
1920
1991
2.808543
GTTCGTCTCCAAAAGTCTGCAT
59.191
45.455
0.00
0.00
0.00
3.96
1927
1998
2.483876
TCTGCTGTTCGTCTCCAAAAG
58.516
47.619
0.00
0.00
0.00
2.27
1947
2018
2.277084
GCACCTGATTACCGAACGATT
58.723
47.619
0.00
0.00
0.00
3.34
2004
2075
1.216941
GGAACGTACGGTGTGTGTGG
61.217
60.000
21.06
0.00
0.00
4.17
2027
2100
3.729716
GCATCGATAGTCTACGTGAAACC
59.270
47.826
0.00
0.00
37.40
3.27
2029
2102
4.895224
AGCATCGATAGTCTACGTGAAA
57.105
40.909
0.00
0.00
37.40
2.69
2042
2115
2.310327
TACGCAGGCCAAGCATCGAT
62.310
55.000
18.67
0.00
0.00
3.59
2134
2217
3.254024
TTTGGCGGGACCTCTGCTC
62.254
63.158
0.00
0.00
46.69
4.26
2136
2219
2.180159
TACTTTGGCGGGACCTCTGC
62.180
60.000
0.00
0.00
46.78
4.26
2324
2429
1.202604
GGTCCTGTGAAGGTGAAACGA
60.203
52.381
0.00
0.00
38.12
3.85
2560
2665
0.517316
GCCTCGTTTCATCTTTGCGT
59.483
50.000
0.00
0.00
0.00
5.24
2561
2666
0.179189
GGCCTCGTTTCATCTTTGCG
60.179
55.000
0.00
0.00
0.00
4.85
2562
2667
0.179189
CGGCCTCGTTTCATCTTTGC
60.179
55.000
0.00
0.00
0.00
3.68
2563
2668
0.447801
CCGGCCTCGTTTCATCTTTG
59.552
55.000
0.00
0.00
33.95
2.77
2564
2669
0.036306
ACCGGCCTCGTTTCATCTTT
59.964
50.000
0.00
0.00
33.95
2.52
2566
2671
1.079127
CACCGGCCTCGTTTCATCT
60.079
57.895
0.00
0.00
33.95
2.90
2569
2674
2.029964
GACACCGGCCTCGTTTCA
59.970
61.111
0.00
0.00
33.95
2.69
2570
2675
3.110178
CGACACCGGCCTCGTTTC
61.110
66.667
0.00
0.00
33.95
2.78
2669
2774
1.668419
GCAATAATGGGTGCTCTCGT
58.332
50.000
0.00
0.00
37.78
4.18
2670
2775
0.947244
GGCAATAATGGGTGCTCTCG
59.053
55.000
0.00
0.00
40.70
4.04
2674
2779
1.455587
CCGGGCAATAATGGGTGCT
60.456
57.895
0.00
0.00
40.70
4.40
2675
2780
2.498056
CCCGGGCAATAATGGGTGC
61.498
63.158
8.08
0.00
40.14
5.01
2677
2782
2.606449
CCCCGGGCAATAATGGGT
59.394
61.111
17.73
0.00
40.20
4.51
2911
3032
2.091555
ACTGTATCTCACTCTCCTCCCC
60.092
54.545
0.00
0.00
0.00
4.81
2917
3038
3.441922
TCAGTGCACTGTATCTCACTCTC
59.558
47.826
38.41
0.00
44.12
3.20
2918
3039
3.425659
TCAGTGCACTGTATCTCACTCT
58.574
45.455
38.41
3.58
44.12
3.24
2969
3095
9.717892
CAAAACAGAGAATCATATCAACAGATG
57.282
33.333
0.00
0.00
37.82
2.90
2970
3096
9.458727
ACAAAACAGAGAATCATATCAACAGAT
57.541
29.630
0.00
0.00
37.82
2.90
2971
3097
8.853077
ACAAAACAGAGAATCATATCAACAGA
57.147
30.769
0.00
0.00
37.82
3.41
2972
3098
9.903682
AAACAAAACAGAGAATCATATCAACAG
57.096
29.630
0.00
0.00
37.82
3.16
3010
3150
4.201744
CCAGCGCAAAAATGGATCAAAATC
60.202
41.667
11.47
0.00
36.09
2.17
3019
3159
1.203052
AGATCACCAGCGCAAAAATGG
59.797
47.619
11.47
11.09
40.10
3.16
3059
3199
4.201744
CCAGCGCAAAAATGGATCAAAATC
60.202
41.667
11.47
0.00
36.09
2.17
3060
3200
3.685756
CCAGCGCAAAAATGGATCAAAAT
59.314
39.130
11.47
0.00
36.09
1.82
3061
3201
3.065655
CCAGCGCAAAAATGGATCAAAA
58.934
40.909
11.47
0.00
36.09
2.44
3062
3202
2.036992
ACCAGCGCAAAAATGGATCAAA
59.963
40.909
18.50
0.00
37.54
2.69
3063
3203
1.617850
ACCAGCGCAAAAATGGATCAA
59.382
42.857
18.50
0.00
37.54
2.57
3064
3204
1.067706
CACCAGCGCAAAAATGGATCA
60.068
47.619
18.50
0.00
37.54
2.92
3065
3205
1.202114
TCACCAGCGCAAAAATGGATC
59.798
47.619
18.50
0.00
37.54
3.36
3066
3206
1.255882
TCACCAGCGCAAAAATGGAT
58.744
45.000
18.50
1.43
37.54
3.41
3067
3207
1.202114
GATCACCAGCGCAAAAATGGA
59.798
47.619
18.50
2.86
37.54
3.41
3068
3208
1.203052
AGATCACCAGCGCAAAAATGG
59.797
47.619
11.47
11.09
40.10
3.16
3069
3209
2.642139
AGATCACCAGCGCAAAAATG
57.358
45.000
11.47
0.00
0.00
2.32
3070
3210
2.821969
AGAAGATCACCAGCGCAAAAAT
59.178
40.909
11.47
0.00
0.00
1.82
3071
3211
2.229792
AGAAGATCACCAGCGCAAAAA
58.770
42.857
11.47
0.00
0.00
1.94
3072
3212
1.896220
AGAAGATCACCAGCGCAAAA
58.104
45.000
11.47
0.00
0.00
2.44
3073
3213
1.536766
CAAGAAGATCACCAGCGCAAA
59.463
47.619
11.47
0.00
0.00
3.68
3074
3214
1.159285
CAAGAAGATCACCAGCGCAA
58.841
50.000
11.47
0.00
0.00
4.85
3075
3215
0.321346
TCAAGAAGATCACCAGCGCA
59.679
50.000
11.47
0.00
0.00
6.09
3076
3216
0.723981
GTCAAGAAGATCACCAGCGC
59.276
55.000
0.00
0.00
0.00
5.92
3077
3217
1.363744
GGTCAAGAAGATCACCAGCG
58.636
55.000
0.00
0.00
0.00
5.18
3078
3218
1.363744
CGGTCAAGAAGATCACCAGC
58.636
55.000
0.00
0.00
0.00
4.85
3079
3219
1.338105
TGCGGTCAAGAAGATCACCAG
60.338
52.381
0.00
0.00
0.00
4.00
3080
3220
0.684535
TGCGGTCAAGAAGATCACCA
59.315
50.000
0.00
0.00
0.00
4.17
3081
3221
1.667724
CATGCGGTCAAGAAGATCACC
59.332
52.381
0.00
0.00
0.00
4.02
3082
3222
1.667724
CCATGCGGTCAAGAAGATCAC
59.332
52.381
0.00
0.00
0.00
3.06
3083
3223
2.013563
GCCATGCGGTCAAGAAGATCA
61.014
52.381
0.00
0.00
33.28
2.92
3084
3224
0.659957
GCCATGCGGTCAAGAAGATC
59.340
55.000
0.00
0.00
33.28
2.75
3085
3225
2.785868
GCCATGCGGTCAAGAAGAT
58.214
52.632
0.00
0.00
33.28
2.40
3086
3226
4.301505
GCCATGCGGTCAAGAAGA
57.698
55.556
0.00
0.00
33.28
2.87
3110
3250
1.536766
CTCGTGGAGTGTTACGGTACA
59.463
52.381
0.00
0.00
40.48
2.90
3111
3251
1.730446
GCTCGTGGAGTGTTACGGTAC
60.730
57.143
0.00
0.00
40.48
3.34
3112
3252
0.523072
GCTCGTGGAGTGTTACGGTA
59.477
55.000
0.00
0.00
40.48
4.02
3114
3254
0.732880
CTGCTCGTGGAGTGTTACGG
60.733
60.000
0.00
0.00
40.48
4.02
3115
3255
0.240145
TCTGCTCGTGGAGTGTTACG
59.760
55.000
5.89
0.00
41.38
3.18
3116
3256
1.540267
TCTCTGCTCGTGGAGTGTTAC
59.460
52.381
5.89
0.00
33.13
2.50
3117
3257
1.813178
CTCTCTGCTCGTGGAGTGTTA
59.187
52.381
5.89
0.00
33.13
2.41
3119
3259
1.247419
CCTCTCTGCTCGTGGAGTGT
61.247
60.000
5.89
0.00
33.13
3.55
3120
3260
0.962855
TCCTCTCTGCTCGTGGAGTG
60.963
60.000
5.89
3.95
33.13
3.51
3121
3261
0.033601
ATCCTCTCTGCTCGTGGAGT
60.034
55.000
5.89
0.00
33.13
3.85
3122
3262
0.385029
CATCCTCTCTGCTCGTGGAG
59.615
60.000
0.00
0.00
0.00
3.86
3123
3263
0.034089
TCATCCTCTCTGCTCGTGGA
60.034
55.000
0.00
0.00
0.00
4.02
3124
3264
1.039068
ATCATCCTCTCTGCTCGTGG
58.961
55.000
0.00
0.00
0.00
4.94
3125
3265
1.868930
GCATCATCCTCTCTGCTCGTG
60.869
57.143
0.00
0.00
0.00
4.35
3126
3266
0.388659
GCATCATCCTCTCTGCTCGT
59.611
55.000
0.00
0.00
0.00
4.18
3127
3267
0.319727
GGCATCATCCTCTCTGCTCG
60.320
60.000
0.00
0.00
35.03
5.03
3128
3268
0.319727
CGGCATCATCCTCTCTGCTC
60.320
60.000
0.00
0.00
35.03
4.26
3168
3308
3.004734
GCAGCACTCGCGTCTGTTC
62.005
63.158
5.77
0.00
45.49
3.18
3231
3371
5.554070
TCACTCAGATCACATTTGACACAT
58.446
37.500
0.00
0.00
33.38
3.21
3250
3390
9.062524
GTTAGTAGTCATAGATCACAGATCACT
57.937
37.037
9.43
6.42
0.00
3.41
3256
3396
9.938670
GTGTTAGTTAGTAGTCATAGATCACAG
57.061
37.037
0.00
0.00
0.00
3.66
3257
3397
9.457436
TGTGTTAGTTAGTAGTCATAGATCACA
57.543
33.333
0.00
0.00
0.00
3.58
3277
3420
7.500141
ACATGAGCAGTGATATACATGTGTTA
58.500
34.615
9.11
0.39
43.85
2.41
3278
3421
6.351711
ACATGAGCAGTGATATACATGTGTT
58.648
36.000
9.11
0.00
43.85
3.32
3282
3425
5.756833
ACACACATGAGCAGTGATATACATG
59.243
40.000
15.36
6.92
40.16
3.21
3283
3426
5.922053
ACACACATGAGCAGTGATATACAT
58.078
37.500
15.36
0.00
40.16
2.29
3284
3427
5.343307
ACACACATGAGCAGTGATATACA
57.657
39.130
15.36
0.00
40.16
2.29
3311
3487
6.201517
CGATAATTCAAGCCCAAATACACAG
58.798
40.000
0.00
0.00
0.00
3.66
3324
3500
3.743396
GCCTCTACCTGCGATAATTCAAG
59.257
47.826
0.00
0.00
0.00
3.02
3348
3524
0.456653
GTGAATTGTGGCGGCATGAC
60.457
55.000
17.19
2.41
0.00
3.06
3414
3591
4.655527
GGCGGATACATCGACCTG
57.344
61.111
0.00
0.00
0.00
4.00
3419
3596
3.190079
CATCAATAGGGCGGATACATCG
58.810
50.000
0.00
0.00
0.00
3.84
3429
3606
2.965572
TTGCTTTGCATCAATAGGGC
57.034
45.000
0.00
0.00
38.76
5.19
3434
3611
7.548075
CCTAAGATTCTTTTGCTTTGCATCAAT
59.452
33.333
3.86
0.00
38.76
2.57
3449
3626
6.777580
TGCTTTCCACTTTTCCTAAGATTCTT
59.222
34.615
4.03
4.03
0.00
2.52
3450
3627
6.207614
GTGCTTTCCACTTTTCCTAAGATTCT
59.792
38.462
0.00
0.00
41.35
2.40
3451
3628
6.016276
TGTGCTTTCCACTTTTCCTAAGATTC
60.016
38.462
0.00
0.00
44.92
2.52
3460
3637
3.801114
AACCTGTGCTTTCCACTTTTC
57.199
42.857
0.00
0.00
44.92
2.29
3475
3652
4.461198
ACCCTTTTCACAGTAGAAACCTG
58.539
43.478
0.00
0.00
37.24
4.00
3500
3677
5.390991
GCCGAGAGATTTTTAAGAGGTTGTG
60.391
44.000
0.00
0.00
0.00
3.33
3513
3690
3.344515
GGGTTTTACAGCCGAGAGATTT
58.655
45.455
0.00
0.00
31.79
2.17
3522
3699
4.139038
TGTAAGACAAGGGTTTTACAGCC
58.861
43.478
6.81
0.00
44.75
4.85
3526
3703
6.935208
AGATGAGTGTAAGACAAGGGTTTTAC
59.065
38.462
0.00
0.00
42.13
2.01
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.