Multiple sequence alignment - TraesCS3A01G344800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3A01G344800
chr3A
100.000
3146
0
0
1
3146
594491193
594494338
0.000000e+00
5810.0
1
TraesCS3A01G344800
chr3A
93.750
48
3
0
1094
1141
170658715
170658762
4.350000e-09
73.1
2
TraesCS3A01G344800
chr3D
92.825
2648
83
50
1
2622
451708843
451711409
0.000000e+00
3738.0
3
TraesCS3A01G344800
chr3D
87.217
2206
99
63
504
2689
451884909
451886951
0.000000e+00
2342.0
4
TraesCS3A01G344800
chr3D
97.826
46
1
0
2889
2934
408647436
408647481
2.600000e-11
80.5
5
TraesCS3A01G344800
chr3D
91.667
48
4
0
1094
1141
157540740
157540693
2.030000e-07
67.6
6
TraesCS3A01G344800
chr3B
91.730
2648
83
50
1
2624
593162602
593165137
0.000000e+00
3552.0
7
TraesCS3A01G344800
chr3B
89.138
2007
85
57
676
2670
593540782
593542667
0.000000e+00
2375.0
8
TraesCS3A01G344800
chr3B
79.927
274
33
14
2637
2889
593165751
593166023
6.930000e-42
182.0
9
TraesCS3A01G344800
chr3B
93.750
48
3
0
1094
1141
228750902
228750855
4.350000e-09
73.1
10
TraesCS3A01G344800
chr1B
88.961
308
34
0
1839
2146
533324012
533323705
6.370000e-102
381.0
11
TraesCS3A01G344800
chr1B
86.111
324
43
2
1277
1599
533324652
533324330
6.460000e-92
348.0
12
TraesCS3A01G344800
chr1A
88.961
308
34
0
1839
2146
495192326
495192019
6.370000e-102
381.0
13
TraesCS3A01G344800
chr1A
87.037
324
40
2
1277
1599
495192933
495192611
6.410000e-97
364.0
14
TraesCS3A01G344800
chr1A
97.826
46
1
0
2889
2934
554474463
554474508
2.600000e-11
80.5
15
TraesCS3A01G344800
chr1D
88.636
308
35
0
1839
2146
397973287
397972980
2.960000e-100
375.0
16
TraesCS3A01G344800
chr1D
85.890
326
42
4
1277
1600
397973932
397973609
8.350000e-91
344.0
17
TraesCS3A01G344800
chr1D
97.826
46
1
0
2889
2934
77984747
77984702
2.600000e-11
80.5
18
TraesCS3A01G344800
chr1D
97.826
46
1
0
2889
2934
111546426
111546471
2.600000e-11
80.5
19
TraesCS3A01G344800
chr1D
97.826
46
1
0
2889
2934
491425089
491425134
2.600000e-11
80.5
20
TraesCS3A01G344800
chr2D
84.709
327
33
15
1277
1590
27837049
27837371
8.470000e-81
311.0
21
TraesCS3A01G344800
chr2A
84.756
328
31
14
1277
1590
29989773
29990095
8.470000e-81
311.0
22
TraesCS3A01G344800
chr2B
83.537
328
35
14
1277
1590
44159063
44159385
3.970000e-74
289.0
23
TraesCS3A01G344800
chr6A
82.712
295
43
6
1838
2128
542430362
542430072
4.030000e-64
255.0
24
TraesCS3A01G344800
chr6B
81.849
292
51
2
1838
2128
592464283
592463993
8.720000e-61
244.0
25
TraesCS3A01G344800
chr5D
97.826
46
1
0
2889
2934
6173086
6173131
2.600000e-11
80.5
26
TraesCS3A01G344800
chr5D
97.826
46
1
0
2889
2934
6272157
6272202
2.600000e-11
80.5
27
TraesCS3A01G344800
chr5D
97.826
46
1
0
2889
2934
512413091
512413046
2.600000e-11
80.5
28
TraesCS3A01G344800
chr4D
97.826
46
1
0
2889
2934
427508415
427508460
2.600000e-11
80.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3A01G344800
chr3A
594491193
594494338
3145
False
5810.0
5810
100.0000
1
3146
1
chr3A.!!$F2
3145
1
TraesCS3A01G344800
chr3D
451708843
451711409
2566
False
3738.0
3738
92.8250
1
2622
1
chr3D.!!$F2
2621
2
TraesCS3A01G344800
chr3D
451884909
451886951
2042
False
2342.0
2342
87.2170
504
2689
1
chr3D.!!$F3
2185
3
TraesCS3A01G344800
chr3B
593540782
593542667
1885
False
2375.0
2375
89.1380
676
2670
1
chr3B.!!$F1
1994
4
TraesCS3A01G344800
chr3B
593162602
593166023
3421
False
1867.0
3552
85.8285
1
2889
2
chr3B.!!$F2
2888
5
TraesCS3A01G344800
chr1B
533323705
533324652
947
True
364.5
381
87.5360
1277
2146
2
chr1B.!!$R1
869
6
TraesCS3A01G344800
chr1A
495192019
495192933
914
True
372.5
381
87.9990
1277
2146
2
chr1A.!!$R1
869
7
TraesCS3A01G344800
chr1D
397972980
397973932
952
True
359.5
375
87.2630
1277
2146
2
chr1D.!!$R2
869
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
975
992
0.03563
AGCTAGAAAGGCACCAGCTG
60.036
55.0
6.78
6.78
40.92
4.24
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2837
3709
0.03601
AGTACAGTGGTGGCTGCATC
60.036
55.0
0.5
0.0
39.96
3.91
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
71
72
5.402464
GGTTACAACCGACGAAAAGTTAA
57.598
39.130
0.00
0.00
39.66
2.01
72
73
5.197549
GGTTACAACCGACGAAAAGTTAAC
58.802
41.667
0.00
0.00
39.66
2.01
73
74
5.006649
GGTTACAACCGACGAAAAGTTAACT
59.993
40.000
1.12
1.12
39.66
2.24
160
161
2.079925
GAGGAACATGCTTCACACTCC
58.920
52.381
0.00
0.00
0.00
3.85
197
198
4.840005
CGCCCTCTTTCCGCTCCC
62.840
72.222
0.00
0.00
0.00
4.30
240
241
4.152607
TGATCGATCGAGCATCACTAAG
57.847
45.455
30.45
0.00
35.47
2.18
304
305
3.269347
AAACTGTTGCGCGCGACT
61.269
55.556
41.74
26.56
0.00
4.18
306
307
2.695712
AAACTGTTGCGCGCGACTTC
62.696
55.000
41.74
23.74
0.00
3.01
325
326
1.222936
GACATCCTGTCCCTGCCAG
59.777
63.158
0.00
0.00
41.37
4.85
402
406
2.824041
GGCGACGGGAACATGCAT
60.824
61.111
0.00
0.00
0.00
3.96
404
408
1.498865
GGCGACGGGAACATGCATAG
61.499
60.000
0.00
0.00
0.00
2.23
483
493
5.487433
TCACACGATCACATGGTTAATCTT
58.513
37.500
0.00
0.00
0.00
2.40
556
566
1.434696
CAGTGGCGAAATCCATGGC
59.565
57.895
6.96
0.00
38.57
4.40
615
625
2.289002
CGAGCTTAATCTGGCCATGAAC
59.711
50.000
5.51
0.00
0.00
3.18
631
641
1.602877
GAACTGTACGCACACGACCG
61.603
60.000
0.00
0.00
43.93
4.79
760
772
4.016706
CGGGCCGGGGATGGATAC
62.017
72.222
20.56
0.00
0.00
2.24
761
773
4.016706
GGGCCGGGGATGGATACG
62.017
72.222
2.18
0.00
42.51
3.06
762
774
4.699522
GGCCGGGGATGGATACGC
62.700
72.222
2.18
0.00
42.51
4.42
801
813
0.974383
TCTCCGACTTTTGTCCCCTC
59.026
55.000
0.00
0.00
46.25
4.30
937
954
1.611673
CCATCGGTTCCTCAGCAAGTT
60.612
52.381
0.00
0.00
0.00
2.66
975
992
0.035630
AGCTAGAAAGGCACCAGCTG
60.036
55.000
6.78
6.78
40.92
4.24
1161
1180
3.132646
GTGAGCTCATCTTCATCAGGAGT
59.867
47.826
21.47
0.00
0.00
3.85
1162
1181
4.340666
GTGAGCTCATCTTCATCAGGAGTA
59.659
45.833
21.47
0.00
0.00
2.59
1163
1182
5.010922
GTGAGCTCATCTTCATCAGGAGTAT
59.989
44.000
21.47
0.00
0.00
2.12
1181
1200
7.549134
CAGGAGTATTATTACACTGTTGAAGCA
59.451
37.037
9.53
0.00
33.98
3.91
1223
1251
8.229605
ACCTATACCTACCTGTATTGTATGTGA
58.770
37.037
8.66
0.00
33.58
3.58
1243
1271
0.320374
GTGGTTCCCGACATGAGTGA
59.680
55.000
0.00
0.00
0.00
3.41
1244
1272
1.052617
TGGTTCCCGACATGAGTGAA
58.947
50.000
0.00
0.00
0.00
3.18
1245
1273
1.628340
TGGTTCCCGACATGAGTGAAT
59.372
47.619
0.00
0.00
0.00
2.57
1246
1274
2.009774
GGTTCCCGACATGAGTGAATG
58.990
52.381
0.00
0.00
0.00
2.67
1250
1278
3.361786
TCCCGACATGAGTGAATGTAGA
58.638
45.455
0.00
0.00
40.87
2.59
1642
1686
4.435121
CGCGTGTACAAACTTCCTTAATCC
60.435
45.833
0.00
0.00
0.00
3.01
1778
1917
3.058016
CACTTGACCACCATGATGTGTTC
60.058
47.826
0.00
0.00
34.35
3.18
1779
1918
2.198827
TGACCACCATGATGTGTTCC
57.801
50.000
0.00
0.00
34.35
3.62
1780
1919
1.423161
TGACCACCATGATGTGTTCCA
59.577
47.619
0.00
0.00
34.35
3.53
1781
1920
2.158549
TGACCACCATGATGTGTTCCAA
60.159
45.455
0.00
0.00
34.35
3.53
1782
1921
2.228822
GACCACCATGATGTGTTCCAAC
59.771
50.000
0.00
0.00
34.35
3.77
1836
2062
2.483583
TTGTGTTTCACCGATTGTGC
57.516
45.000
0.00
0.00
45.03
4.57
1917
2143
2.111043
AACCTGGTGCTGGTGACG
59.889
61.111
0.00
0.00
35.88
4.35
2163
2389
1.515304
GCGAGCTGGACGACTTCTC
60.515
63.158
0.00
0.00
0.00
2.87
2215
2447
2.469274
TTGGAGCTTGAGCAAGAGAG
57.531
50.000
14.04
0.00
45.16
3.20
2277
2510
0.392729
ATTCTGAGGCTGCTGCTGAC
60.393
55.000
15.64
7.58
39.59
3.51
2304
2537
1.833606
GCTTAGGCCTCCCCTTCTC
59.166
63.158
9.68
0.00
43.06
2.87
2429
2664
5.437060
GCAAGGTGATCTTATTCAAGGGTA
58.563
41.667
0.00
0.00
33.68
3.69
2478
2715
7.066887
TGTTTTGTATTCATGTGTGAGAGTGTT
59.933
33.333
0.00
0.00
35.39
3.32
2497
2734
5.861787
AGTGTTTTGTAACTTCTGTTGTTGC
59.138
36.000
0.00
0.00
37.59
4.17
2503
2740
4.630505
TGTAACTTCTGTTGTTGCGTTGTA
59.369
37.500
0.00
0.00
37.59
2.41
2543
2791
1.993956
TGGTTGGGAGATGTTTGTGG
58.006
50.000
0.00
0.00
0.00
4.17
2666
3521
1.145738
AGCTGACCTTTGTCCCATGTT
59.854
47.619
0.00
0.00
41.01
2.71
2672
3527
0.604578
CTTTGTCCCATGTTGCCTGG
59.395
55.000
0.00
0.00
0.00
4.45
2711
3569
6.951198
TGTAACACTTGGATTGATTGGGTATT
59.049
34.615
0.00
0.00
0.00
1.89
2732
3590
1.250840
GCCCCTCGAAAAATGCCACT
61.251
55.000
0.00
0.00
0.00
4.00
2735
3593
1.613437
CCCTCGAAAAATGCCACTGTT
59.387
47.619
0.00
0.00
0.00
3.16
2770
3641
4.400961
GCCACTCCAAGCTCGCCT
62.401
66.667
0.00
0.00
0.00
5.52
2773
3644
4.749310
ACTCCAAGCTCGCCTGCG
62.749
66.667
4.92
4.92
41.35
5.18
2774
3645
4.749310
CTCCAAGCTCGCCTGCGT
62.749
66.667
11.68
0.00
40.74
5.24
2778
3649
2.046892
AAGCTCGCCTGCGTGATT
60.047
55.556
16.69
13.70
40.74
2.57
2795
3666
1.961180
ATTGCTCTCCCGAGAACCCG
61.961
60.000
0.00
0.00
39.74
5.28
2829
3701
1.601419
CGCCTTCAAGGAGGGTACGA
61.601
60.000
7.98
0.00
37.67
3.43
2830
3702
0.108281
GCCTTCAAGGAGGGTACGAC
60.108
60.000
7.98
0.00
37.67
4.34
2834
3706
0.963962
TCAAGGAGGGTACGACACAC
59.036
55.000
0.00
0.00
0.00
3.82
2836
3708
0.677842
AAGGAGGGTACGACACACAC
59.322
55.000
0.00
0.00
30.42
3.82
2837
3709
1.080974
GGAGGGTACGACACACACG
60.081
63.158
0.00
0.00
30.42
4.49
2838
3710
1.518056
GGAGGGTACGACACACACGA
61.518
60.000
0.00
0.00
30.42
4.35
2840
3712
0.242825
AGGGTACGACACACACGATG
59.757
55.000
0.00
0.00
30.42
3.84
2841
3713
1.349259
GGGTACGACACACACGATGC
61.349
60.000
0.00
0.00
34.70
3.91
2843
3715
0.708370
GTACGACACACACGATGCAG
59.292
55.000
0.00
0.00
34.70
4.41
2844
3716
1.006825
TACGACACACACGATGCAGC
61.007
55.000
0.00
0.00
34.70
5.25
2845
3717
2.863153
GACACACACGATGCAGCC
59.137
61.111
0.00
0.00
0.00
4.85
2847
3719
2.175184
GACACACACGATGCAGCCAC
62.175
60.000
0.00
0.00
0.00
5.01
2849
3721
2.669229
CACACGATGCAGCCACCA
60.669
61.111
0.00
0.00
0.00
4.17
2850
3722
2.669569
ACACGATGCAGCCACCAC
60.670
61.111
0.00
0.00
0.00
4.16
2851
3723
2.359107
CACGATGCAGCCACCACT
60.359
61.111
0.00
0.00
0.00
4.00
2852
3724
2.359107
ACGATGCAGCCACCACTG
60.359
61.111
0.00
0.00
40.80
3.66
2853
3725
2.359107
CGATGCAGCCACCACTGT
60.359
61.111
0.00
0.00
39.96
3.55
2854
3726
1.079197
CGATGCAGCCACCACTGTA
60.079
57.895
0.00
0.00
39.96
2.74
2858
3734
1.121407
TGCAGCCACCACTGTACTCT
61.121
55.000
0.00
0.00
39.96
3.24
2863
3739
1.132643
GCCACCACTGTACTCTAGTCG
59.867
57.143
0.00
0.00
0.00
4.18
2889
3765
3.838244
TGGATTTTCACCCGAGATAGG
57.162
47.619
0.00
0.00
0.00
2.57
2890
3766
3.112263
TGGATTTTCACCCGAGATAGGT
58.888
45.455
0.00
0.00
38.48
3.08
2891
3767
3.521937
TGGATTTTCACCCGAGATAGGTT
59.478
43.478
0.00
0.00
34.56
3.50
2892
3768
4.018779
TGGATTTTCACCCGAGATAGGTTT
60.019
41.667
0.00
0.00
34.56
3.27
2893
3769
4.948004
GGATTTTCACCCGAGATAGGTTTT
59.052
41.667
0.00
0.00
34.56
2.43
2894
3770
5.066117
GGATTTTCACCCGAGATAGGTTTTC
59.934
44.000
0.00
0.00
34.56
2.29
2895
3771
3.622166
TTCACCCGAGATAGGTTTTCC
57.378
47.619
0.00
0.00
34.56
3.13
2896
3772
1.479323
TCACCCGAGATAGGTTTTCCG
59.521
52.381
0.00
0.00
46.35
4.30
2897
3773
1.206371
CACCCGAGATAGGTTTTCCGT
59.794
52.381
0.00
0.00
46.35
4.69
2898
3774
1.904537
ACCCGAGATAGGTTTTCCGTT
59.095
47.619
0.00
0.00
46.35
4.44
2899
3775
2.303890
ACCCGAGATAGGTTTTCCGTTT
59.696
45.455
0.00
0.00
46.35
3.60
2900
3776
2.934553
CCCGAGATAGGTTTTCCGTTTC
59.065
50.000
0.00
0.00
46.35
2.78
2901
3777
2.934553
CCGAGATAGGTTTTCCGTTTCC
59.065
50.000
0.00
0.00
46.35
3.13
2902
3778
2.601763
CGAGATAGGTTTTCCGTTTCCG
59.398
50.000
0.00
0.00
46.35
4.30
2919
3795
5.975939
CGTTTCCGGAGACTAGTAAAATAGG
59.024
44.000
21.62
0.00
0.00
2.57
2920
3796
5.526506
TTCCGGAGACTAGTAAAATAGGC
57.473
43.478
3.34
0.00
0.00
3.93
2921
3797
3.567164
TCCGGAGACTAGTAAAATAGGCG
59.433
47.826
0.00
0.00
35.80
5.52
2922
3798
3.305199
CCGGAGACTAGTAAAATAGGCGG
60.305
52.174
0.00
0.00
35.80
6.13
2923
3799
3.567164
CGGAGACTAGTAAAATAGGCGGA
59.433
47.826
0.00
0.00
35.80
5.54
2924
3800
4.217983
CGGAGACTAGTAAAATAGGCGGAT
59.782
45.833
0.00
0.00
35.80
4.18
2925
3801
5.278858
CGGAGACTAGTAAAATAGGCGGATT
60.279
44.000
0.00
0.00
35.80
3.01
2926
3802
6.157904
GGAGACTAGTAAAATAGGCGGATTC
58.842
44.000
0.00
0.00
35.80
2.52
2927
3803
6.015265
GGAGACTAGTAAAATAGGCGGATTCT
60.015
42.308
0.00
0.00
35.80
2.40
2928
3804
6.750148
AGACTAGTAAAATAGGCGGATTCTG
58.250
40.000
0.00
0.00
35.80
3.02
2929
3805
5.855045
ACTAGTAAAATAGGCGGATTCTGG
58.145
41.667
0.00
0.00
0.00
3.86
2930
3806
5.601313
ACTAGTAAAATAGGCGGATTCTGGA
59.399
40.000
0.00
0.00
0.00
3.86
2931
3807
5.367945
AGTAAAATAGGCGGATTCTGGAA
57.632
39.130
0.00
0.00
0.00
3.53
2932
3808
5.123936
AGTAAAATAGGCGGATTCTGGAAC
58.876
41.667
0.00
0.00
0.00
3.62
2933
3809
2.640316
AATAGGCGGATTCTGGAACC
57.360
50.000
0.00
0.00
0.00
3.62
2935
3811
1.682451
TAGGCGGATTCTGGAACCGG
61.682
60.000
6.79
0.00
45.66
5.28
2936
3812
2.513897
GCGGATTCTGGAACCGGG
60.514
66.667
6.32
0.00
45.66
5.73
2937
3813
2.987125
CGGATTCTGGAACCGGGT
59.013
61.111
6.32
0.00
42.48
5.28
2938
3814
1.449601
CGGATTCTGGAACCGGGTG
60.450
63.158
6.32
0.00
42.48
4.61
2939
3815
1.077716
GGATTCTGGAACCGGGTGG
60.078
63.158
6.32
0.00
42.84
4.61
2940
3816
1.559065
GGATTCTGGAACCGGGTGGA
61.559
60.000
6.32
0.00
39.21
4.02
2941
3817
0.546598
GATTCTGGAACCGGGTGGAT
59.453
55.000
6.32
0.00
39.21
3.41
2942
3818
1.766496
GATTCTGGAACCGGGTGGATA
59.234
52.381
6.32
0.00
39.21
2.59
2943
3819
1.200519
TTCTGGAACCGGGTGGATAG
58.799
55.000
6.32
0.00
39.21
2.08
2944
3820
0.337082
TCTGGAACCGGGTGGATAGA
59.663
55.000
6.32
0.00
39.21
1.98
2945
3821
0.753262
CTGGAACCGGGTGGATAGAG
59.247
60.000
6.32
0.00
39.21
2.43
2946
3822
0.689745
TGGAACCGGGTGGATAGAGG
60.690
60.000
6.32
0.00
39.21
3.69
2947
3823
1.408453
GGAACCGGGTGGATAGAGGG
61.408
65.000
6.32
0.00
39.21
4.30
2948
3824
1.384082
AACCGGGTGGATAGAGGGG
60.384
63.158
6.32
0.00
39.21
4.79
2949
3825
1.893588
AACCGGGTGGATAGAGGGGA
61.894
60.000
6.32
0.00
39.21
4.81
2950
3826
1.837499
CCGGGTGGATAGAGGGGAC
60.837
68.421
0.00
0.00
37.49
4.46
2963
3839
2.430367
GGGACCTCAACGGCAACT
59.570
61.111
0.00
0.00
35.61
3.16
2964
3840
1.671379
GGGACCTCAACGGCAACTC
60.671
63.158
0.00
0.00
35.61
3.01
2965
3841
1.671379
GGACCTCAACGGCAACTCC
60.671
63.158
0.00
0.00
35.61
3.85
2966
3842
1.070786
GACCTCAACGGCAACTCCA
59.929
57.895
0.00
0.00
35.61
3.86
2967
3843
0.534203
GACCTCAACGGCAACTCCAA
60.534
55.000
0.00
0.00
35.61
3.53
2968
3844
0.535102
ACCTCAACGGCAACTCCAAG
60.535
55.000
0.00
0.00
35.61
3.61
2969
3845
1.237285
CCTCAACGGCAACTCCAAGG
61.237
60.000
0.00
0.00
34.01
3.61
2970
3846
0.250295
CTCAACGGCAACTCCAAGGA
60.250
55.000
0.00
0.00
34.01
3.36
2971
3847
0.250295
TCAACGGCAACTCCAAGGAG
60.250
55.000
14.44
14.44
46.91
3.69
2972
3848
1.073199
AACGGCAACTCCAAGGAGG
59.927
57.895
19.62
4.72
45.88
4.30
2973
3849
1.415672
AACGGCAACTCCAAGGAGGA
61.416
55.000
19.62
0.00
45.88
3.71
2983
3859
3.154827
TCCAAGGAGGAAAATGACACC
57.845
47.619
0.00
0.00
45.65
4.16
2984
3860
2.171003
CCAAGGAGGAAAATGACACCC
58.829
52.381
0.00
0.00
41.22
4.61
2985
3861
2.171003
CAAGGAGGAAAATGACACCCC
58.829
52.381
0.00
0.00
0.00
4.95
2986
3862
1.760405
AGGAGGAAAATGACACCCCT
58.240
50.000
0.00
0.00
0.00
4.79
2987
3863
1.636003
AGGAGGAAAATGACACCCCTC
59.364
52.381
0.00
0.00
41.92
4.30
2988
3864
1.679032
GGAGGAAAATGACACCCCTCG
60.679
57.143
0.00
0.00
43.19
4.63
2989
3865
0.328258
AGGAAAATGACACCCCTCGG
59.672
55.000
0.00
0.00
0.00
4.63
2990
3866
1.313091
GGAAAATGACACCCCTCGGC
61.313
60.000
0.00
0.00
0.00
5.54
2991
3867
0.322546
GAAAATGACACCCCTCGGCT
60.323
55.000
0.00
0.00
0.00
5.52
2992
3868
0.112412
AAAATGACACCCCTCGGCTT
59.888
50.000
0.00
0.00
0.00
4.35
2993
3869
0.112412
AAATGACACCCCTCGGCTTT
59.888
50.000
0.00
0.00
0.00
3.51
2994
3870
0.609131
AATGACACCCCTCGGCTTTG
60.609
55.000
0.00
0.00
0.00
2.77
2995
3871
1.779061
ATGACACCCCTCGGCTTTGT
61.779
55.000
0.00
0.00
0.00
2.83
2996
3872
1.671379
GACACCCCTCGGCTTTGTC
60.671
63.158
0.00
0.00
0.00
3.18
2997
3873
2.742372
CACCCCTCGGCTTTGTCG
60.742
66.667
0.00
0.00
0.00
4.35
2998
3874
3.239253
ACCCCTCGGCTTTGTCGT
61.239
61.111
0.00
0.00
30.45
4.34
2999
3875
2.434359
CCCCTCGGCTTTGTCGTC
60.434
66.667
0.00
0.00
30.45
4.20
3000
3876
2.809601
CCCTCGGCTTTGTCGTCG
60.810
66.667
0.00
0.00
30.45
5.12
3001
3877
2.049433
CCTCGGCTTTGTCGTCGT
60.049
61.111
0.00
0.00
33.02
4.34
3002
3878
2.087009
CCTCGGCTTTGTCGTCGTC
61.087
63.158
0.00
0.00
33.02
4.20
3003
3879
1.371267
CTCGGCTTTGTCGTCGTCA
60.371
57.895
0.00
0.00
33.02
4.35
3004
3880
1.337817
CTCGGCTTTGTCGTCGTCAG
61.338
60.000
0.00
0.00
33.02
3.51
3005
3881
2.372690
CGGCTTTGTCGTCGTCAGG
61.373
63.158
0.00
0.00
0.00
3.86
3006
3882
2.668280
GGCTTTGTCGTCGTCAGGC
61.668
63.158
9.57
9.57
0.00
4.85
3007
3883
2.668280
GCTTTGTCGTCGTCAGGCC
61.668
63.158
0.00
0.00
0.00
5.19
3008
3884
2.355363
TTTGTCGTCGTCAGGCCG
60.355
61.111
0.00
0.00
0.00
6.13
3009
3885
3.851845
TTTGTCGTCGTCAGGCCGG
62.852
63.158
0.00
0.00
0.00
6.13
3011
3887
4.773117
GTCGTCGTCAGGCCGGAC
62.773
72.222
24.44
24.44
34.42
4.79
3025
3901
2.044551
GGACGGACCGACTAGGGT
60.045
66.667
23.38
0.00
46.96
4.34
3026
3902
1.680314
GGACGGACCGACTAGGGTT
60.680
63.158
23.38
0.00
46.96
4.11
3027
3903
1.253593
GGACGGACCGACTAGGGTTT
61.254
60.000
23.38
0.00
46.96
3.27
3028
3904
0.172127
GACGGACCGACTAGGGTTTC
59.828
60.000
23.38
0.00
46.96
2.78
3029
3905
1.253593
ACGGACCGACTAGGGTTTCC
61.254
60.000
23.38
0.00
46.96
3.13
3030
3906
1.903294
GGACCGACTAGGGTTTCCC
59.097
63.158
0.00
0.00
46.96
3.97
3040
3916
4.843624
GGTTTCCCCTGTCCCTTG
57.156
61.111
0.00
0.00
0.00
3.61
3041
3917
1.606601
GGTTTCCCCTGTCCCTTGC
60.607
63.158
0.00
0.00
0.00
4.01
3042
3918
1.606601
GTTTCCCCTGTCCCTTGCC
60.607
63.158
0.00
0.00
0.00
4.52
3043
3919
2.088096
TTTCCCCTGTCCCTTGCCA
61.088
57.895
0.00
0.00
0.00
4.92
3044
3920
2.080336
TTTCCCCTGTCCCTTGCCAG
62.080
60.000
0.00
0.00
0.00
4.85
3045
3921
4.748144
CCCCTGTCCCTTGCCAGC
62.748
72.222
0.00
0.00
0.00
4.85
3046
3922
3.655211
CCCTGTCCCTTGCCAGCT
61.655
66.667
0.00
0.00
0.00
4.24
3047
3923
2.045536
CCTGTCCCTTGCCAGCTC
60.046
66.667
0.00
0.00
0.00
4.09
3048
3924
2.045536
CTGTCCCTTGCCAGCTCC
60.046
66.667
0.00
0.00
0.00
4.70
3049
3925
2.853542
TGTCCCTTGCCAGCTCCA
60.854
61.111
0.00
0.00
0.00
3.86
3050
3926
2.360475
GTCCCTTGCCAGCTCCAC
60.360
66.667
0.00
0.00
0.00
4.02
3051
3927
3.650950
TCCCTTGCCAGCTCCACC
61.651
66.667
0.00
0.00
0.00
4.61
3052
3928
4.748144
CCCTTGCCAGCTCCACCC
62.748
72.222
0.00
0.00
0.00
4.61
3069
3945
2.819595
CGCACCCGGGTTCATCAG
60.820
66.667
27.83
13.42
0.00
2.90
3070
3946
2.668632
GCACCCGGGTTCATCAGA
59.331
61.111
27.83
0.00
0.00
3.27
3071
3947
1.450312
GCACCCGGGTTCATCAGAG
60.450
63.158
27.83
11.68
0.00
3.35
3072
3948
1.450312
CACCCGGGTTCATCAGAGC
60.450
63.158
27.83
0.00
0.00
4.09
3073
3949
2.190578
CCCGGGTTCATCAGAGCC
59.809
66.667
14.18
0.00
43.80
4.70
3076
3952
4.522971
GGGTTCATCAGAGCCGTC
57.477
61.111
0.00
0.00
45.33
4.79
3077
3953
1.596934
GGGTTCATCAGAGCCGTCA
59.403
57.895
0.00
0.00
45.33
4.35
3078
3954
0.036388
GGGTTCATCAGAGCCGTCAA
60.036
55.000
0.00
0.00
45.33
3.18
3079
3955
1.079503
GGTTCATCAGAGCCGTCAAC
58.920
55.000
0.00
0.00
35.33
3.18
3080
3956
1.079503
GTTCATCAGAGCCGTCAACC
58.920
55.000
0.00
0.00
0.00
3.77
3081
3957
0.389817
TTCATCAGAGCCGTCAACCG
60.390
55.000
0.00
0.00
0.00
4.44
3082
3958
1.215382
CATCAGAGCCGTCAACCGA
59.785
57.895
0.00
0.00
39.56
4.69
3083
3959
0.803768
CATCAGAGCCGTCAACCGAG
60.804
60.000
0.00
0.00
39.56
4.63
3084
3960
1.949847
ATCAGAGCCGTCAACCGAGG
61.950
60.000
0.00
0.00
39.56
4.63
3086
3962
3.692406
GAGCCGTCAACCGAGGGT
61.692
66.667
3.41
0.00
46.88
4.34
3087
3963
3.644399
GAGCCGTCAACCGAGGGTC
62.644
68.421
3.41
0.00
46.88
4.46
3097
3973
2.434359
CGAGGGTCGGAAGCAACC
60.434
66.667
0.00
0.00
36.00
3.77
3105
3981
3.882025
GGAAGCAACCGAGAGCAG
58.118
61.111
0.00
0.00
0.00
4.24
3106
3982
2.394563
GGAAGCAACCGAGAGCAGC
61.395
63.158
0.00
0.00
0.00
5.25
3107
3983
2.734673
GAAGCAACCGAGAGCAGCG
61.735
63.158
0.00
0.00
0.00
5.18
3108
3984
3.226429
AAGCAACCGAGAGCAGCGA
62.226
57.895
0.00
0.00
0.00
4.93
3109
3985
3.184683
GCAACCGAGAGCAGCGAG
61.185
66.667
0.00
0.00
0.00
5.03
3110
3986
2.568612
CAACCGAGAGCAGCGAGA
59.431
61.111
0.00
0.00
0.00
4.04
3111
3987
1.515952
CAACCGAGAGCAGCGAGAG
60.516
63.158
0.00
0.00
0.00
3.20
3112
3988
1.675972
AACCGAGAGCAGCGAGAGA
60.676
57.895
0.00
0.00
0.00
3.10
3113
3989
1.653094
AACCGAGAGCAGCGAGAGAG
61.653
60.000
0.00
0.00
0.00
3.20
3114
3990
1.817520
CCGAGAGCAGCGAGAGAGA
60.818
63.158
0.00
0.00
0.00
3.10
3115
3991
1.643292
CGAGAGCAGCGAGAGAGAG
59.357
63.158
0.00
0.00
0.00
3.20
3116
3992
0.809636
CGAGAGCAGCGAGAGAGAGA
60.810
60.000
0.00
0.00
0.00
3.10
3117
3993
0.657840
GAGAGCAGCGAGAGAGAGAC
59.342
60.000
0.00
0.00
0.00
3.36
3118
3994
0.253044
AGAGCAGCGAGAGAGAGACT
59.747
55.000
0.00
0.00
0.00
3.24
3119
3995
0.378257
GAGCAGCGAGAGAGAGACTG
59.622
60.000
0.00
0.00
0.00
3.51
3120
3996
1.031571
AGCAGCGAGAGAGAGACTGG
61.032
60.000
0.00
0.00
0.00
4.00
3121
3997
1.029408
GCAGCGAGAGAGAGACTGGA
61.029
60.000
0.00
0.00
0.00
3.86
3122
3998
1.016627
CAGCGAGAGAGAGACTGGAG
58.983
60.000
0.00
0.00
0.00
3.86
3123
3999
0.908910
AGCGAGAGAGAGACTGGAGA
59.091
55.000
0.00
0.00
0.00
3.71
3124
4000
1.490490
AGCGAGAGAGAGACTGGAGAT
59.510
52.381
0.00
0.00
0.00
2.75
3125
4001
1.603802
GCGAGAGAGAGACTGGAGATG
59.396
57.143
0.00
0.00
0.00
2.90
3126
4002
2.744823
GCGAGAGAGAGACTGGAGATGA
60.745
54.545
0.00
0.00
0.00
2.92
3127
4003
3.540617
CGAGAGAGAGACTGGAGATGAA
58.459
50.000
0.00
0.00
0.00
2.57
3128
4004
3.944650
CGAGAGAGAGACTGGAGATGAAA
59.055
47.826
0.00
0.00
0.00
2.69
3129
4005
4.035558
CGAGAGAGAGACTGGAGATGAAAG
59.964
50.000
0.00
0.00
0.00
2.62
3130
4006
5.191727
AGAGAGAGACTGGAGATGAAAGA
57.808
43.478
0.00
0.00
0.00
2.52
3131
4007
5.195940
AGAGAGAGACTGGAGATGAAAGAG
58.804
45.833
0.00
0.00
0.00
2.85
3132
4008
3.701040
AGAGAGACTGGAGATGAAAGAGC
59.299
47.826
0.00
0.00
0.00
4.09
3133
4009
2.765699
AGAGACTGGAGATGAAAGAGCC
59.234
50.000
0.00
0.00
0.00
4.70
3134
4010
2.499289
GAGACTGGAGATGAAAGAGCCA
59.501
50.000
0.00
0.00
0.00
4.75
3135
4011
3.113824
AGACTGGAGATGAAAGAGCCAT
58.886
45.455
0.00
0.00
0.00
4.40
3136
4012
3.118334
AGACTGGAGATGAAAGAGCCATG
60.118
47.826
0.00
0.00
0.00
3.66
3137
4013
2.575279
ACTGGAGATGAAAGAGCCATGT
59.425
45.455
0.00
0.00
0.00
3.21
3138
4014
3.776969
ACTGGAGATGAAAGAGCCATGTA
59.223
43.478
0.00
0.00
0.00
2.29
3139
4015
4.125703
CTGGAGATGAAAGAGCCATGTAC
58.874
47.826
0.00
0.00
0.00
2.90
3140
4016
3.118261
TGGAGATGAAAGAGCCATGTACC
60.118
47.826
0.00
0.00
0.00
3.34
3141
4017
3.135530
GGAGATGAAAGAGCCATGTACCT
59.864
47.826
0.00
0.00
0.00
3.08
3142
4018
4.376146
GAGATGAAAGAGCCATGTACCTC
58.624
47.826
0.00
0.00
0.00
3.85
3143
4019
3.135530
AGATGAAAGAGCCATGTACCTCC
59.864
47.826
0.00
0.00
0.00
4.30
3144
4020
2.265367
TGAAAGAGCCATGTACCTCCA
58.735
47.619
0.00
0.00
0.00
3.86
3145
4021
2.846206
TGAAAGAGCCATGTACCTCCAT
59.154
45.455
0.00
0.00
0.00
3.41
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
9
10
5.403766
CCTGTCGCTCTGCTAAAGTTATATG
59.596
44.000
0.00
0.00
0.00
1.78
70
71
5.501897
CGAAACTTGCGTTCTTCAGTTAGTT
60.502
40.000
0.00
0.00
31.66
2.24
71
72
4.025979
CGAAACTTGCGTTCTTCAGTTAGT
60.026
41.667
0.00
0.00
31.66
2.24
72
73
4.208460
TCGAAACTTGCGTTCTTCAGTTAG
59.792
41.667
0.00
0.00
31.66
2.34
73
74
4.114073
TCGAAACTTGCGTTCTTCAGTTA
58.886
39.130
0.00
0.00
31.66
2.24
160
161
0.726827
CATGACAACCAATCGTCCCG
59.273
55.000
0.00
0.00
0.00
5.14
197
198
7.477144
TCAAGTTGCACGTAGATTAATATGG
57.523
36.000
0.00
0.00
0.00
2.74
325
326
3.490526
TGCCAAACTTTTACTACGACGTC
59.509
43.478
2.43
5.18
0.00
4.34
402
406
4.412796
AGATGCTGCTGCTAATGAACTA
57.587
40.909
17.00
0.00
40.48
2.24
404
408
3.376234
TCAAGATGCTGCTGCTAATGAAC
59.624
43.478
17.00
0.00
40.48
3.18
501
511
7.997773
ACAATATGGATCCTCTTGATTGATG
57.002
36.000
20.98
7.84
32.41
3.07
583
593
0.394216
TTAAGCTCGCATGCCCACAT
60.394
50.000
13.15
0.00
36.79
3.21
584
594
0.394216
ATTAAGCTCGCATGCCCACA
60.394
50.000
13.15
0.00
0.00
4.17
585
595
0.308993
GATTAAGCTCGCATGCCCAC
59.691
55.000
13.15
0.75
0.00
4.61
586
596
0.181114
AGATTAAGCTCGCATGCCCA
59.819
50.000
13.15
0.00
0.00
5.36
587
597
0.590195
CAGATTAAGCTCGCATGCCC
59.410
55.000
13.15
0.38
0.00
5.36
588
598
0.590195
CCAGATTAAGCTCGCATGCC
59.410
55.000
13.15
0.00
0.00
4.40
592
602
0.181114
ATGGCCAGATTAAGCTCGCA
59.819
50.000
13.05
0.00
0.00
5.10
615
625
2.803670
CCGGTCGTGTGCGTACAG
60.804
66.667
6.58
1.60
37.52
2.74
631
641
0.304705
CACACAACGAGACAGCAACC
59.695
55.000
0.00
0.00
0.00
3.77
762
774
1.218316
GGAAGTGGGGACTGCGTAG
59.782
63.158
0.00
0.00
0.00
3.51
801
813
3.731295
GGAACGGCAGAGAGAGAAG
57.269
57.895
0.00
0.00
0.00
2.85
829
841
1.006832
CTGGCCGTTGGAATCGTTAG
58.993
55.000
0.00
0.00
0.00
2.34
858
870
1.549170
AGGTATTTATAGGCGAGCCGG
59.451
52.381
8.63
0.00
41.95
6.13
860
872
3.430513
GGCTAGGTATTTATAGGCGAGCC
60.431
52.174
5.89
5.89
40.13
4.70
937
954
2.568090
GGTAAAGCGACCGACCGA
59.432
61.111
0.72
0.00
0.00
4.69
1013
1032
0.740516
GAAGAGCAGGAGCAGAGCAC
60.741
60.000
0.00
0.00
45.49
4.40
1188
1207
4.523558
CAGGTAGGTATAGGTAGGTGCTTC
59.476
50.000
0.00
0.00
0.00
3.86
1203
1222
5.128827
CCACTCACATACAATACAGGTAGGT
59.871
44.000
0.00
0.00
36.30
3.08
1204
1223
5.128827
ACCACTCACATACAATACAGGTAGG
59.871
44.000
0.00
0.00
0.00
3.18
1780
1919
7.701579
TGATTGGATCATGCAACTTGGAAGTT
61.702
38.462
0.00
0.00
41.09
2.66
1781
1920
3.159213
TGGATCATGCAACTTGGAAGT
57.841
42.857
0.00
0.00
42.04
3.01
1782
1921
4.158949
TGATTGGATCATGCAACTTGGAAG
59.841
41.667
0.00
0.00
33.59
3.46
2215
2447
5.975282
ACTATAACGAAGAGGTTTCCTTCC
58.025
41.667
0.00
0.00
37.36
3.46
2262
2495
3.243816
TGGTCAGCAGCAGCCTCA
61.244
61.111
0.00
0.00
43.56
3.86
2304
2537
8.767085
GTCTACTACTGTGCTACTAGTATGAAG
58.233
40.741
2.33
2.28
0.00
3.02
2429
2664
5.877012
CACTCCATGCATGTACTTCTAAAGT
59.123
40.000
24.58
10.41
45.40
2.66
2478
2715
4.688511
ACGCAACAACAGAAGTTACAAA
57.311
36.364
0.00
0.00
35.85
2.83
2497
2734
1.089112
GGATTCGGGGGTTTACAACG
58.911
55.000
0.00
0.00
0.00
4.10
2503
2740
1.874299
ATGGCAGGATTCGGGGGTTT
61.874
55.000
0.00
0.00
0.00
3.27
2682
3540
6.405065
CCCAATCAATCCAAGTGTTACATGAG
60.405
42.308
0.00
0.00
0.00
2.90
2689
3547
6.700352
CAAATACCCAATCAATCCAAGTGTT
58.300
36.000
0.00
0.00
0.00
3.32
2691
3549
5.111293
GCAAATACCCAATCAATCCAAGTG
58.889
41.667
0.00
0.00
0.00
3.16
2711
3569
0.829602
TGGCATTTTTCGAGGGGCAA
60.830
50.000
0.00
0.00
0.00
4.52
2716
3574
3.369546
AAACAGTGGCATTTTTCGAGG
57.630
42.857
0.00
0.00
0.00
4.63
2735
3593
6.866248
GGAGTGGCTTTTTCGAATGATAAAAA
59.134
34.615
0.00
0.00
34.39
1.94
2739
3597
4.584874
TGGAGTGGCTTTTTCGAATGATA
58.415
39.130
0.00
0.00
0.00
2.15
2742
3600
3.568538
CTTGGAGTGGCTTTTTCGAATG
58.431
45.455
0.00
0.00
0.00
2.67
2770
3641
2.125552
CGGGAGAGCAATCACGCA
60.126
61.111
0.00
0.00
39.59
5.24
2795
3666
3.680786
GCGTTGCCTGGGGGAAAC
61.681
66.667
0.00
0.00
45.55
2.78
2829
3701
2.110835
TGGCTGCATCGTGTGTGT
59.889
55.556
0.50
0.00
0.00
3.72
2830
3702
2.557805
GTGGCTGCATCGTGTGTG
59.442
61.111
0.50
0.00
0.00
3.82
2834
3706
2.359107
AGTGGTGGCTGCATCGTG
60.359
61.111
0.50
0.00
0.00
4.35
2836
3708
1.079197
TACAGTGGTGGCTGCATCG
60.079
57.895
0.50
0.00
39.96
3.84
2837
3709
0.036010
AGTACAGTGGTGGCTGCATC
60.036
55.000
0.50
0.00
39.96
3.91
2838
3710
0.036010
GAGTACAGTGGTGGCTGCAT
60.036
55.000
0.50
0.00
39.96
3.96
2840
3712
0.895530
TAGAGTACAGTGGTGGCTGC
59.104
55.000
0.00
0.00
39.96
5.25
2841
3713
2.164624
GACTAGAGTACAGTGGTGGCTG
59.835
54.545
0.00
0.00
41.92
4.85
2843
3715
1.132643
CGACTAGAGTACAGTGGTGGC
59.867
57.143
0.00
0.00
0.00
5.01
2844
3716
2.434428
ACGACTAGAGTACAGTGGTGG
58.566
52.381
0.00
0.00
34.21
4.61
2845
3717
5.814764
AATACGACTAGAGTACAGTGGTG
57.185
43.478
8.99
0.00
35.95
4.17
2847
3719
6.034591
CCAAAATACGACTAGAGTACAGTGG
58.965
44.000
0.00
5.36
0.00
4.00
2849
3721
7.642082
ATCCAAAATACGACTAGAGTACAGT
57.358
36.000
0.00
0.00
0.00
3.55
2850
3722
8.928270
AAATCCAAAATACGACTAGAGTACAG
57.072
34.615
0.00
0.00
0.00
2.74
2851
3723
9.362539
GAAAATCCAAAATACGACTAGAGTACA
57.637
33.333
0.00
0.00
0.00
2.90
2852
3724
9.362539
TGAAAATCCAAAATACGACTAGAGTAC
57.637
33.333
0.00
0.00
0.00
2.73
2853
3725
9.362539
GTGAAAATCCAAAATACGACTAGAGTA
57.637
33.333
0.00
0.71
0.00
2.59
2854
3726
7.333672
GGTGAAAATCCAAAATACGACTAGAGT
59.666
37.037
0.00
0.00
0.00
3.24
2858
3734
5.352016
CGGGTGAAAATCCAAAATACGACTA
59.648
40.000
0.00
0.00
0.00
2.59
2863
3739
5.890424
TCTCGGGTGAAAATCCAAAATAC
57.110
39.130
0.00
0.00
0.00
1.89
2896
3772
5.752472
GCCTATTTTACTAGTCTCCGGAAAC
59.248
44.000
5.23
1.28
0.00
2.78
2897
3773
5.450965
CGCCTATTTTACTAGTCTCCGGAAA
60.451
44.000
5.23
0.00
0.00
3.13
2898
3774
4.037208
CGCCTATTTTACTAGTCTCCGGAA
59.963
45.833
5.23
0.00
0.00
4.30
2899
3775
3.567164
CGCCTATTTTACTAGTCTCCGGA
59.433
47.826
2.93
2.93
0.00
5.14
2900
3776
3.305199
CCGCCTATTTTACTAGTCTCCGG
60.305
52.174
0.00
0.00
0.00
5.14
2901
3777
3.567164
TCCGCCTATTTTACTAGTCTCCG
59.433
47.826
0.00
0.00
0.00
4.63
2902
3778
5.725325
ATCCGCCTATTTTACTAGTCTCC
57.275
43.478
0.00
0.00
0.00
3.71
2903
3779
6.864165
CAGAATCCGCCTATTTTACTAGTCTC
59.136
42.308
0.00
0.00
0.00
3.36
2904
3780
6.239345
CCAGAATCCGCCTATTTTACTAGTCT
60.239
42.308
0.00
0.00
0.00
3.24
2905
3781
5.927115
CCAGAATCCGCCTATTTTACTAGTC
59.073
44.000
0.00
0.00
0.00
2.59
2906
3782
5.601313
TCCAGAATCCGCCTATTTTACTAGT
59.399
40.000
0.00
0.00
0.00
2.57
2907
3783
6.097915
TCCAGAATCCGCCTATTTTACTAG
57.902
41.667
0.00
0.00
0.00
2.57
2908
3784
6.285990
GTTCCAGAATCCGCCTATTTTACTA
58.714
40.000
0.00
0.00
0.00
1.82
2909
3785
5.123936
GTTCCAGAATCCGCCTATTTTACT
58.876
41.667
0.00
0.00
0.00
2.24
2910
3786
4.275196
GGTTCCAGAATCCGCCTATTTTAC
59.725
45.833
0.00
0.00
0.00
2.01
2911
3787
4.457466
GGTTCCAGAATCCGCCTATTTTA
58.543
43.478
0.00
0.00
0.00
1.52
2912
3788
3.288092
GGTTCCAGAATCCGCCTATTTT
58.712
45.455
0.00
0.00
0.00
1.82
2913
3789
2.745152
CGGTTCCAGAATCCGCCTATTT
60.745
50.000
7.96
0.00
37.90
1.40
2914
3790
1.202651
CGGTTCCAGAATCCGCCTATT
60.203
52.381
7.96
0.00
37.90
1.73
2915
3791
0.393077
CGGTTCCAGAATCCGCCTAT
59.607
55.000
7.96
0.00
37.90
2.57
2916
3792
1.682451
CCGGTTCCAGAATCCGCCTA
61.682
60.000
12.84
0.00
42.48
3.93
2917
3793
2.584608
CGGTTCCAGAATCCGCCT
59.415
61.111
7.96
0.00
37.90
5.52
2918
3794
2.513897
CCGGTTCCAGAATCCGCC
60.514
66.667
12.84
0.00
42.48
6.13
2919
3795
2.513897
CCCGGTTCCAGAATCCGC
60.514
66.667
0.00
0.00
42.48
5.54
2920
3796
1.449601
CACCCGGTTCCAGAATCCG
60.450
63.158
0.00
11.86
43.30
4.18
2921
3797
1.077716
CCACCCGGTTCCAGAATCC
60.078
63.158
0.00
0.00
0.00
3.01
2922
3798
0.546598
ATCCACCCGGTTCCAGAATC
59.453
55.000
0.00
0.00
0.00
2.52
2923
3799
1.768870
CTATCCACCCGGTTCCAGAAT
59.231
52.381
0.00
0.00
0.00
2.40
2924
3800
1.200519
CTATCCACCCGGTTCCAGAA
58.799
55.000
0.00
0.00
0.00
3.02
2925
3801
0.337082
TCTATCCACCCGGTTCCAGA
59.663
55.000
0.00
0.00
0.00
3.86
2926
3802
0.753262
CTCTATCCACCCGGTTCCAG
59.247
60.000
0.00
0.00
0.00
3.86
2927
3803
0.689745
CCTCTATCCACCCGGTTCCA
60.690
60.000
0.00
0.00
0.00
3.53
2928
3804
1.408453
CCCTCTATCCACCCGGTTCC
61.408
65.000
0.00
0.00
0.00
3.62
2929
3805
1.408453
CCCCTCTATCCACCCGGTTC
61.408
65.000
0.00
0.00
0.00
3.62
2930
3806
1.384082
CCCCTCTATCCACCCGGTT
60.384
63.158
0.00
0.00
0.00
4.44
2931
3807
2.285868
CCCCTCTATCCACCCGGT
59.714
66.667
0.00
0.00
0.00
5.28
2932
3808
1.837499
GTCCCCTCTATCCACCCGG
60.837
68.421
0.00
0.00
0.00
5.73
2933
3809
1.837499
GGTCCCCTCTATCCACCCG
60.837
68.421
0.00
0.00
0.00
5.28
2934
3810
0.472161
GAGGTCCCCTCTATCCACCC
60.472
65.000
2.98
0.00
46.41
4.61
2935
3811
3.151048
GAGGTCCCCTCTATCCACC
57.849
63.158
2.98
0.00
46.41
4.61
2944
3820
2.852075
TTGCCGTTGAGGTCCCCT
60.852
61.111
0.00
0.00
43.70
4.79
2945
3821
2.671963
GTTGCCGTTGAGGTCCCC
60.672
66.667
0.00
0.00
43.70
4.81
2946
3822
1.671379
GAGTTGCCGTTGAGGTCCC
60.671
63.158
0.00
0.00
43.70
4.46
2947
3823
1.671379
GGAGTTGCCGTTGAGGTCC
60.671
63.158
0.00
0.00
43.70
4.46
2948
3824
0.534203
TTGGAGTTGCCGTTGAGGTC
60.534
55.000
0.00
0.00
43.70
3.85
2949
3825
0.535102
CTTGGAGTTGCCGTTGAGGT
60.535
55.000
0.00
0.00
43.70
3.85
2950
3826
1.237285
CCTTGGAGTTGCCGTTGAGG
61.237
60.000
0.00
0.00
44.97
3.86
2951
3827
0.250295
TCCTTGGAGTTGCCGTTGAG
60.250
55.000
0.00
0.00
40.66
3.02
2952
3828
0.250295
CTCCTTGGAGTTGCCGTTGA
60.250
55.000
8.45
0.00
40.66
3.18
2953
3829
1.237285
CCTCCTTGGAGTTGCCGTTG
61.237
60.000
14.77
0.00
40.66
4.10
2954
3830
1.073199
CCTCCTTGGAGTTGCCGTT
59.927
57.895
14.77
0.00
40.66
4.44
2955
3831
1.841556
TCCTCCTTGGAGTTGCCGT
60.842
57.895
14.77
0.00
40.56
5.68
2956
3832
3.068881
TCCTCCTTGGAGTTGCCG
58.931
61.111
14.77
0.51
40.56
5.69
2963
3839
2.225017
GGGTGTCATTTTCCTCCTTGGA
60.225
50.000
0.00
0.00
44.51
3.53
2964
3840
2.171003
GGGTGTCATTTTCCTCCTTGG
58.829
52.381
0.00
0.00
37.10
3.61
2965
3841
2.171003
GGGGTGTCATTTTCCTCCTTG
58.829
52.381
0.00
0.00
0.00
3.61
2966
3842
2.041755
GAGGGGTGTCATTTTCCTCCTT
59.958
50.000
0.00
0.00
38.36
3.36
2967
3843
1.636003
GAGGGGTGTCATTTTCCTCCT
59.364
52.381
0.00
0.00
38.36
3.69
2968
3844
1.679032
CGAGGGGTGTCATTTTCCTCC
60.679
57.143
0.00
0.00
40.50
4.30
2969
3845
1.679032
CCGAGGGGTGTCATTTTCCTC
60.679
57.143
0.00
0.00
40.28
3.71
2970
3846
0.328258
CCGAGGGGTGTCATTTTCCT
59.672
55.000
0.00
0.00
0.00
3.36
2971
3847
1.313091
GCCGAGGGGTGTCATTTTCC
61.313
60.000
0.00
0.00
34.97
3.13
2972
3848
0.322546
AGCCGAGGGGTGTCATTTTC
60.323
55.000
0.00
0.00
34.97
2.29
2973
3849
0.112412
AAGCCGAGGGGTGTCATTTT
59.888
50.000
0.00
0.00
31.90
1.82
2974
3850
0.112412
AAAGCCGAGGGGTGTCATTT
59.888
50.000
0.00
0.00
31.90
2.32
2975
3851
0.609131
CAAAGCCGAGGGGTGTCATT
60.609
55.000
0.00
0.00
31.90
2.57
2976
3852
1.002134
CAAAGCCGAGGGGTGTCAT
60.002
57.895
0.00
0.00
31.90
3.06
2977
3853
2.391724
GACAAAGCCGAGGGGTGTCA
62.392
60.000
0.00
0.00
37.01
3.58
2978
3854
1.671379
GACAAAGCCGAGGGGTGTC
60.671
63.158
0.00
0.00
31.95
3.67
2979
3855
2.430367
GACAAAGCCGAGGGGTGT
59.570
61.111
0.00
0.00
31.90
4.16
2980
3856
2.742372
CGACAAAGCCGAGGGGTG
60.742
66.667
0.00
0.00
31.90
4.61
2981
3857
3.236003
GACGACAAAGCCGAGGGGT
62.236
63.158
0.00
0.00
34.97
4.95
2982
3858
2.434359
GACGACAAAGCCGAGGGG
60.434
66.667
0.00
0.00
0.00
4.79
2983
3859
2.809601
CGACGACAAAGCCGAGGG
60.810
66.667
0.00
0.00
0.00
4.30
2984
3860
2.049433
ACGACGACAAAGCCGAGG
60.049
61.111
0.00
0.00
0.00
4.63
2985
3861
1.337817
CTGACGACGACAAAGCCGAG
61.338
60.000
0.00
0.00
0.00
4.63
2986
3862
1.371267
CTGACGACGACAAAGCCGA
60.371
57.895
0.00
0.00
0.00
5.54
2987
3863
2.372690
CCTGACGACGACAAAGCCG
61.373
63.158
0.00
0.00
0.00
5.52
2988
3864
2.668280
GCCTGACGACGACAAAGCC
61.668
63.158
0.00
0.00
0.00
4.35
2989
3865
2.668280
GGCCTGACGACGACAAAGC
61.668
63.158
0.00
7.63
0.00
3.51
2990
3866
2.372690
CGGCCTGACGACGACAAAG
61.373
63.158
0.00
0.00
35.47
2.77
2991
3867
2.355363
CGGCCTGACGACGACAAA
60.355
61.111
0.00
0.00
35.47
2.83
2992
3868
4.351938
CCGGCCTGACGACGACAA
62.352
66.667
0.00
0.00
35.47
3.18
2994
3870
4.773117
GTCCGGCCTGACGACGAC
62.773
72.222
11.85
0.00
35.47
4.34
3008
3884
1.253593
AAACCCTAGTCGGTCCGTCC
61.254
60.000
11.88
3.31
33.98
4.79
3009
3885
0.172127
GAAACCCTAGTCGGTCCGTC
59.828
60.000
11.88
5.68
33.98
4.79
3010
3886
1.253593
GGAAACCCTAGTCGGTCCGT
61.254
60.000
11.88
0.00
33.98
4.69
3011
3887
1.514553
GGAAACCCTAGTCGGTCCG
59.485
63.158
4.39
4.39
33.98
4.79
3024
3900
1.606601
GGCAAGGGACAGGGGAAAC
60.607
63.158
0.00
0.00
0.00
2.78
3025
3901
2.088096
TGGCAAGGGACAGGGGAAA
61.088
57.895
0.00
0.00
0.00
3.13
3026
3902
2.451493
TGGCAAGGGACAGGGGAA
60.451
61.111
0.00
0.00
0.00
3.97
3032
3908
2.853542
TGGAGCTGGCAAGGGACA
60.854
61.111
0.00
0.00
0.00
4.02
3033
3909
2.360475
GTGGAGCTGGCAAGGGAC
60.360
66.667
0.00
0.00
0.00
4.46
3034
3910
3.650950
GGTGGAGCTGGCAAGGGA
61.651
66.667
0.00
0.00
0.00
4.20
3035
3911
4.748144
GGGTGGAGCTGGCAAGGG
62.748
72.222
0.00
0.00
0.00
3.95
3051
3927
4.402528
TGATGAACCCGGGTGCGG
62.403
66.667
31.05
0.00
0.00
5.69
3052
3928
2.819595
CTGATGAACCCGGGTGCG
60.820
66.667
31.05
8.66
0.00
5.34
3053
3929
1.450312
CTCTGATGAACCCGGGTGC
60.450
63.158
31.05
28.67
0.00
5.01
3054
3930
1.450312
GCTCTGATGAACCCGGGTG
60.450
63.158
31.05
14.22
0.00
4.61
3055
3931
2.670148
GGCTCTGATGAACCCGGGT
61.670
63.158
24.16
24.16
0.00
5.28
3056
3932
2.190578
GGCTCTGATGAACCCGGG
59.809
66.667
22.25
22.25
0.00
5.73
3057
3933
2.202932
CGGCTCTGATGAACCCGG
60.203
66.667
0.00
0.00
35.11
5.73
3058
3934
1.519455
GACGGCTCTGATGAACCCG
60.519
63.158
0.00
0.00
40.63
5.28
3059
3935
0.036388
TTGACGGCTCTGATGAACCC
60.036
55.000
0.00
0.00
0.00
4.11
3060
3936
1.079503
GTTGACGGCTCTGATGAACC
58.920
55.000
0.00
0.00
0.00
3.62
3061
3937
1.079503
GGTTGACGGCTCTGATGAAC
58.920
55.000
0.00
0.00
0.00
3.18
3062
3938
0.389817
CGGTTGACGGCTCTGATGAA
60.390
55.000
0.00
0.00
39.42
2.57
3063
3939
1.215382
CGGTTGACGGCTCTGATGA
59.785
57.895
0.00
0.00
39.42
2.92
3064
3940
0.803768
CTCGGTTGACGGCTCTGATG
60.804
60.000
0.00
0.00
44.45
3.07
3065
3941
1.513158
CTCGGTTGACGGCTCTGAT
59.487
57.895
0.00
0.00
44.45
2.90
3066
3942
2.636412
CCTCGGTTGACGGCTCTGA
61.636
63.158
0.00
0.00
44.45
3.27
3067
3943
2.125912
CCTCGGTTGACGGCTCTG
60.126
66.667
0.00
0.00
44.45
3.35
3068
3944
3.382832
CCCTCGGTTGACGGCTCT
61.383
66.667
0.00
0.00
44.45
4.09
3069
3945
3.644399
GACCCTCGGTTGACGGCTC
62.644
68.421
0.00
0.00
44.45
4.70
3070
3946
3.692406
GACCCTCGGTTGACGGCT
61.692
66.667
0.00
0.00
44.45
5.52
3080
3956
2.434359
GGTTGCTTCCGACCCTCG
60.434
66.667
0.00
0.00
39.29
4.63
3088
3964
2.394563
GCTGCTCTCGGTTGCTTCC
61.395
63.158
0.00
0.00
0.00
3.46
3089
3965
2.734673
CGCTGCTCTCGGTTGCTTC
61.735
63.158
0.00
0.00
0.00
3.86
3090
3966
2.740055
CGCTGCTCTCGGTTGCTT
60.740
61.111
0.00
0.00
0.00
3.91
3091
3967
3.639541
CTCGCTGCTCTCGGTTGCT
62.640
63.158
0.00
0.00
0.00
3.91
3092
3968
3.184683
CTCGCTGCTCTCGGTTGC
61.185
66.667
0.00
0.00
0.00
4.17
3093
3969
1.515952
CTCTCGCTGCTCTCGGTTG
60.516
63.158
0.00
0.00
0.00
3.77
3094
3970
1.653094
CTCTCTCGCTGCTCTCGGTT
61.653
60.000
0.00
0.00
0.00
4.44
3095
3971
2.045829
TCTCTCGCTGCTCTCGGT
60.046
61.111
0.00
0.00
0.00
4.69
3096
3972
1.775039
CTCTCTCTCGCTGCTCTCGG
61.775
65.000
0.00
0.00
0.00
4.63
3097
3973
0.809636
TCTCTCTCTCGCTGCTCTCG
60.810
60.000
0.00
0.00
0.00
4.04
3098
3974
0.657840
GTCTCTCTCTCGCTGCTCTC
59.342
60.000
0.00
0.00
0.00
3.20
3099
3975
0.253044
AGTCTCTCTCTCGCTGCTCT
59.747
55.000
0.00
0.00
0.00
4.09
3100
3976
0.378257
CAGTCTCTCTCTCGCTGCTC
59.622
60.000
0.00
0.00
0.00
4.26
3101
3977
1.031571
CCAGTCTCTCTCTCGCTGCT
61.032
60.000
0.00
0.00
0.00
4.24
3102
3978
1.029408
TCCAGTCTCTCTCTCGCTGC
61.029
60.000
0.00
0.00
0.00
5.25
3103
3979
1.016627
CTCCAGTCTCTCTCTCGCTG
58.983
60.000
0.00
0.00
0.00
5.18
3104
3980
0.908910
TCTCCAGTCTCTCTCTCGCT
59.091
55.000
0.00
0.00
0.00
4.93
3105
3981
1.603802
CATCTCCAGTCTCTCTCTCGC
59.396
57.143
0.00
0.00
0.00
5.03
3106
3982
3.192541
TCATCTCCAGTCTCTCTCTCG
57.807
52.381
0.00
0.00
0.00
4.04
3107
3983
5.192927
TCTTTCATCTCCAGTCTCTCTCTC
58.807
45.833
0.00
0.00
0.00
3.20
3108
3984
5.191727
TCTTTCATCTCCAGTCTCTCTCT
57.808
43.478
0.00
0.00
0.00
3.10
3109
3985
4.202050
GCTCTTTCATCTCCAGTCTCTCTC
60.202
50.000
0.00
0.00
0.00
3.20
3110
3986
3.701040
GCTCTTTCATCTCCAGTCTCTCT
59.299
47.826
0.00
0.00
0.00
3.10
3111
3987
3.181476
GGCTCTTTCATCTCCAGTCTCTC
60.181
52.174
0.00
0.00
0.00
3.20
3112
3988
2.765699
GGCTCTTTCATCTCCAGTCTCT
59.234
50.000
0.00
0.00
0.00
3.10
3113
3989
2.499289
TGGCTCTTTCATCTCCAGTCTC
59.501
50.000
0.00
0.00
0.00
3.36
3114
3990
2.544721
TGGCTCTTTCATCTCCAGTCT
58.455
47.619
0.00
0.00
0.00
3.24
3115
3991
3.204526
CATGGCTCTTTCATCTCCAGTC
58.795
50.000
0.00
0.00
0.00
3.51
3116
3992
2.575279
ACATGGCTCTTTCATCTCCAGT
59.425
45.455
0.00
0.00
0.00
4.00
3117
3993
3.278668
ACATGGCTCTTTCATCTCCAG
57.721
47.619
0.00
0.00
0.00
3.86
3118
3994
3.118261
GGTACATGGCTCTTTCATCTCCA
60.118
47.826
0.00
0.00
0.00
3.86
3119
3995
3.135530
AGGTACATGGCTCTTTCATCTCC
59.864
47.826
0.00
0.00
0.00
3.71
3120
3996
4.376146
GAGGTACATGGCTCTTTCATCTC
58.624
47.826
0.00
0.00
0.00
2.75
3121
3997
3.135530
GGAGGTACATGGCTCTTTCATCT
59.864
47.826
0.00
0.00
0.00
2.90
3122
3998
3.118261
TGGAGGTACATGGCTCTTTCATC
60.118
47.826
0.00
0.00
0.00
2.92
3123
3999
2.846206
TGGAGGTACATGGCTCTTTCAT
59.154
45.455
0.00
0.00
0.00
2.57
3124
4000
2.265367
TGGAGGTACATGGCTCTTTCA
58.735
47.619
0.00
0.00
0.00
2.69
3125
4001
3.567478
ATGGAGGTACATGGCTCTTTC
57.433
47.619
0.00
0.00
0.00
2.62
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.