Multiple sequence alignment - TraesCS3A01G344200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G344200 chr3A 100.000 2549 0 0 1 2549 593511665 593514213 0.000000e+00 4708
1 TraesCS3A01G344200 chr3A 91.604 1870 106 16 564 2427 706125756 706123932 0.000000e+00 2536
2 TraesCS3A01G344200 chr3A 94.159 565 31 2 1 563 251691835 251691271 0.000000e+00 859
3 TraesCS3A01G344200 chr3A 90.653 567 47 6 1 563 512976692 512977256 0.000000e+00 749
4 TraesCS3A01G344200 chr3A 90.714 560 45 7 1 556 335775974 335776530 0.000000e+00 739
5 TraesCS3A01G344200 chr7D 93.660 2003 90 10 553 2549 90563648 90561677 0.000000e+00 2961
6 TraesCS3A01G344200 chr7D 92.473 1913 78 14 647 2549 605599928 605601784 0.000000e+00 2675
7 TraesCS3A01G344200 chr3D 92.800 1986 87 15 564 2549 546485995 546487924 0.000000e+00 2824
8 TraesCS3A01G344200 chr3D 91.863 1868 126 12 562 2424 370069641 370071487 0.000000e+00 2584
9 TraesCS3A01G344200 chr3D 90.622 1866 95 17 564 2424 527509677 527511467 0.000000e+00 2403
10 TraesCS3A01G344200 chr5D 92.022 1993 82 21 564 2549 6910281 6908359 0.000000e+00 2728
11 TraesCS3A01G344200 chr5D 93.275 342 23 0 562 903 363887962 363888303 2.930000e-139 505
12 TraesCS3A01G344200 chr5D 91.690 361 24 3 555 909 473071181 473071541 1.760000e-136 496
13 TraesCS3A01G344200 chr6D 91.641 1986 84 17 564 2543 28981283 28979374 0.000000e+00 2673
14 TraesCS3A01G344200 chr7A 90.331 1996 139 19 564 2549 709273716 709275667 0.000000e+00 2567
15 TraesCS3A01G344200 chr7A 90.973 565 44 7 2 563 109557937 109558497 0.000000e+00 754
16 TraesCS3A01G344200 chr1D 94.170 1681 66 7 873 2549 25464597 25466249 0.000000e+00 2532
17 TraesCS3A01G344200 chr1D 94.015 1036 35 7 1516 2549 435236323 435235313 0.000000e+00 1544
18 TraesCS3A01G344200 chr1D 90.498 221 7 7 2334 2549 437480444 437480655 1.930000e-71 279
19 TraesCS3A01G344200 chr7B 93.517 1666 79 7 889 2549 702337576 702339217 0.000000e+00 2451
20 TraesCS3A01G344200 chr7B 92.775 609 20 2 1941 2549 663203479 663204063 0.000000e+00 859
21 TraesCS3A01G344200 chr7B 88.889 261 6 10 2289 2549 523523336 523523099 1.480000e-77 300
22 TraesCS3A01G344200 chr2B 92.667 1691 85 14 859 2546 485691107 485692761 0.000000e+00 2399
23 TraesCS3A01G344200 chr2A 91.523 1746 108 18 561 2301 100836038 100837748 0.000000e+00 2368
24 TraesCS3A01G344200 chr3B 91.082 1682 100 16 876 2549 763485272 763483633 0.000000e+00 2230
25 TraesCS3A01G344200 chr5A 91.197 568 42 8 1 563 306062914 306063478 0.000000e+00 765
26 TraesCS3A01G344200 chr5A 90.569 562 50 3 1 559 296007372 296007933 0.000000e+00 741
27 TraesCS3A01G344200 chr5A 90.476 567 43 11 2 562 167968769 167969330 0.000000e+00 737
28 TraesCS3A01G344200 chr6A 90.510 569 45 8 1 562 108459870 108460436 0.000000e+00 743
29 TraesCS3A01G344200 chr6A 90.476 567 48 6 1 563 144024802 144025366 0.000000e+00 743
30 TraesCS3A01G344200 chr4B 90.909 418 26 7 560 973 660380887 660380478 3.710000e-153 551
31 TraesCS3A01G344200 chr1B 88.973 263 6 4 2287 2549 56815809 56816048 1.150000e-78 303


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G344200 chr3A 593511665 593514213 2548 False 4708 4708 100.000 1 2549 1 chr3A.!!$F3 2548
1 TraesCS3A01G344200 chr3A 706123932 706125756 1824 True 2536 2536 91.604 564 2427 1 chr3A.!!$R2 1863
2 TraesCS3A01G344200 chr3A 251691271 251691835 564 True 859 859 94.159 1 563 1 chr3A.!!$R1 562
3 TraesCS3A01G344200 chr3A 512976692 512977256 564 False 749 749 90.653 1 563 1 chr3A.!!$F2 562
4 TraesCS3A01G344200 chr3A 335775974 335776530 556 False 739 739 90.714 1 556 1 chr3A.!!$F1 555
5 TraesCS3A01G344200 chr7D 90561677 90563648 1971 True 2961 2961 93.660 553 2549 1 chr7D.!!$R1 1996
6 TraesCS3A01G344200 chr7D 605599928 605601784 1856 False 2675 2675 92.473 647 2549 1 chr7D.!!$F1 1902
7 TraesCS3A01G344200 chr3D 546485995 546487924 1929 False 2824 2824 92.800 564 2549 1 chr3D.!!$F3 1985
8 TraesCS3A01G344200 chr3D 370069641 370071487 1846 False 2584 2584 91.863 562 2424 1 chr3D.!!$F1 1862
9 TraesCS3A01G344200 chr3D 527509677 527511467 1790 False 2403 2403 90.622 564 2424 1 chr3D.!!$F2 1860
10 TraesCS3A01G344200 chr5D 6908359 6910281 1922 True 2728 2728 92.022 564 2549 1 chr5D.!!$R1 1985
11 TraesCS3A01G344200 chr6D 28979374 28981283 1909 True 2673 2673 91.641 564 2543 1 chr6D.!!$R1 1979
12 TraesCS3A01G344200 chr7A 709273716 709275667 1951 False 2567 2567 90.331 564 2549 1 chr7A.!!$F2 1985
13 TraesCS3A01G344200 chr7A 109557937 109558497 560 False 754 754 90.973 2 563 1 chr7A.!!$F1 561
14 TraesCS3A01G344200 chr1D 25464597 25466249 1652 False 2532 2532 94.170 873 2549 1 chr1D.!!$F1 1676
15 TraesCS3A01G344200 chr1D 435235313 435236323 1010 True 1544 1544 94.015 1516 2549 1 chr1D.!!$R1 1033
16 TraesCS3A01G344200 chr7B 702337576 702339217 1641 False 2451 2451 93.517 889 2549 1 chr7B.!!$F2 1660
17 TraesCS3A01G344200 chr7B 663203479 663204063 584 False 859 859 92.775 1941 2549 1 chr7B.!!$F1 608
18 TraesCS3A01G344200 chr2B 485691107 485692761 1654 False 2399 2399 92.667 859 2546 1 chr2B.!!$F1 1687
19 TraesCS3A01G344200 chr2A 100836038 100837748 1710 False 2368 2368 91.523 561 2301 1 chr2A.!!$F1 1740
20 TraesCS3A01G344200 chr3B 763483633 763485272 1639 True 2230 2230 91.082 876 2549 1 chr3B.!!$R1 1673
21 TraesCS3A01G344200 chr5A 306062914 306063478 564 False 765 765 91.197 1 563 1 chr5A.!!$F3 562
22 TraesCS3A01G344200 chr5A 296007372 296007933 561 False 741 741 90.569 1 559 1 chr5A.!!$F2 558
23 TraesCS3A01G344200 chr5A 167968769 167969330 561 False 737 737 90.476 2 562 1 chr5A.!!$F1 560
24 TraesCS3A01G344200 chr6A 108459870 108460436 566 False 743 743 90.510 1 562 1 chr6A.!!$F1 561
25 TraesCS3A01G344200 chr6A 144024802 144025366 564 False 743 743 90.476 1 563 1 chr6A.!!$F2 562

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 238 0.178932 AAGAAAAAGGGTGGGAGGGC 60.179 55.0 0.00 0.0 0.0 5.19 F
627 633 0.248012 TTGCCCTCAGACGCGAATTA 59.752 50.0 15.93 0.0 0.0 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1183 1320 1.278127 AGATCCCGACCACGAAAATGT 59.722 47.619 0.00 0.0 42.66 2.71 R
2372 2708 0.729140 GTGGCAGTGCAAACATACGC 60.729 55.000 18.61 0.0 0.00 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 6.266103 TGAGAAAGCATTTGAACTGAGGAAAT 59.734 34.615 0.00 0.00 39.27 2.17
91 97 2.731976 CGGAGAAGAAAACGAGTGAAGG 59.268 50.000 0.00 0.00 0.00 3.46
133 139 8.732746 TCCCTTAGCATCTTTATTAGAAACAC 57.267 34.615 0.00 0.00 36.22 3.32
151 157 4.577834 ACACCGGGTAAAACATTGAAAG 57.422 40.909 6.32 0.00 0.00 2.62
191 197 9.994432 GACTTCTCACAAATAAAAGGATACATG 57.006 33.333 0.00 0.00 41.41 3.21
192 198 9.739276 ACTTCTCACAAATAAAAGGATACATGA 57.261 29.630 0.00 0.00 41.41 3.07
208 214 9.995003 AGGATACATGATTAAGAAATCTGAGTC 57.005 33.333 0.00 0.00 40.18 3.36
209 215 9.213799 GGATACATGATTAAGAAATCTGAGTCC 57.786 37.037 0.00 5.57 41.83 3.85
210 216 9.995003 GATACATGATTAAGAAATCTGAGTCCT 57.005 33.333 0.00 0.00 41.83 3.85
211 217 9.775854 ATACATGATTAAGAAATCTGAGTCCTG 57.224 33.333 0.00 0.00 41.83 3.86
212 218 7.052873 ACATGATTAAGAAATCTGAGTCCTGG 58.947 38.462 0.00 0.00 41.83 4.45
213 219 6.874278 TGATTAAGAAATCTGAGTCCTGGA 57.126 37.500 0.00 0.00 41.83 3.86
214 220 7.257790 TGATTAAGAAATCTGAGTCCTGGAA 57.742 36.000 0.00 0.00 41.83 3.53
215 221 7.334090 TGATTAAGAAATCTGAGTCCTGGAAG 58.666 38.462 0.00 0.00 41.83 3.46
216 222 6.935240 TTAAGAAATCTGAGTCCTGGAAGA 57.065 37.500 0.00 0.00 34.07 2.87
217 223 5.832539 AAGAAATCTGAGTCCTGGAAGAA 57.167 39.130 0.00 0.00 34.07 2.52
218 224 5.832539 AGAAATCTGAGTCCTGGAAGAAA 57.167 39.130 0.00 0.00 34.07 2.52
219 225 6.192970 AGAAATCTGAGTCCTGGAAGAAAA 57.807 37.500 0.00 0.00 34.07 2.29
220 226 6.605119 AGAAATCTGAGTCCTGGAAGAAAAA 58.395 36.000 0.00 0.00 34.07 1.94
221 227 6.714356 AGAAATCTGAGTCCTGGAAGAAAAAG 59.286 38.462 0.00 0.00 34.07 2.27
222 228 4.357918 TCTGAGTCCTGGAAGAAAAAGG 57.642 45.455 0.00 0.00 34.07 3.11
223 229 3.073062 TCTGAGTCCTGGAAGAAAAAGGG 59.927 47.826 0.00 0.00 34.07 3.95
224 230 2.783510 TGAGTCCTGGAAGAAAAAGGGT 59.216 45.455 0.00 0.00 34.07 4.34
225 231 3.149981 GAGTCCTGGAAGAAAAAGGGTG 58.850 50.000 0.00 0.00 34.07 4.61
226 232 2.158460 AGTCCTGGAAGAAAAAGGGTGG 60.158 50.000 0.00 0.00 34.07 4.61
227 233 1.146982 TCCTGGAAGAAAAAGGGTGGG 59.853 52.381 0.00 0.00 34.07 4.61
228 234 1.146982 CCTGGAAGAAAAAGGGTGGGA 59.853 52.381 0.00 0.00 34.07 4.37
229 235 2.519013 CTGGAAGAAAAAGGGTGGGAG 58.481 52.381 0.00 0.00 34.07 4.30
230 236 1.146982 TGGAAGAAAAAGGGTGGGAGG 59.853 52.381 0.00 0.00 0.00 4.30
231 237 1.550179 GGAAGAAAAAGGGTGGGAGGG 60.550 57.143 0.00 0.00 0.00 4.30
232 238 0.178932 AAGAAAAAGGGTGGGAGGGC 60.179 55.000 0.00 0.00 0.00 5.19
233 239 1.977009 GAAAAAGGGTGGGAGGGCG 60.977 63.158 0.00 0.00 0.00 6.13
234 240 3.523374 AAAAAGGGTGGGAGGGCGG 62.523 63.158 0.00 0.00 0.00 6.13
239 245 3.974293 GGTGGGAGGGCGGGAAAA 61.974 66.667 0.00 0.00 0.00 2.29
240 246 2.116556 GTGGGAGGGCGGGAAAAA 59.883 61.111 0.00 0.00 0.00 1.94
241 247 2.116556 TGGGAGGGCGGGAAAAAC 59.883 61.111 0.00 0.00 0.00 2.43
242 248 2.116556 GGGAGGGCGGGAAAAACA 59.883 61.111 0.00 0.00 0.00 2.83
243 249 1.532078 GGGAGGGCGGGAAAAACAA 60.532 57.895 0.00 0.00 0.00 2.83
244 250 1.116536 GGGAGGGCGGGAAAAACAAA 61.117 55.000 0.00 0.00 0.00 2.83
245 251 0.317160 GGAGGGCGGGAAAAACAAAG 59.683 55.000 0.00 0.00 0.00 2.77
246 252 1.324383 GAGGGCGGGAAAAACAAAGA 58.676 50.000 0.00 0.00 0.00 2.52
247 253 1.000607 GAGGGCGGGAAAAACAAAGAC 60.001 52.381 0.00 0.00 0.00 3.01
248 254 0.747852 GGGCGGGAAAAACAAAGACA 59.252 50.000 0.00 0.00 0.00 3.41
249 255 1.137282 GGGCGGGAAAAACAAAGACAA 59.863 47.619 0.00 0.00 0.00 3.18
250 256 2.198406 GGCGGGAAAAACAAAGACAAC 58.802 47.619 0.00 0.00 0.00 3.32
251 257 2.159156 GGCGGGAAAAACAAAGACAACT 60.159 45.455 0.00 0.00 0.00 3.16
252 258 3.517602 GCGGGAAAAACAAAGACAACTT 58.482 40.909 0.00 0.00 38.05 2.66
253 259 3.305897 GCGGGAAAAACAAAGACAACTTG 59.694 43.478 0.00 0.00 36.39 3.16
254 260 3.862845 CGGGAAAAACAAAGACAACTTGG 59.137 43.478 0.00 0.00 36.39 3.61
255 261 4.188462 GGGAAAAACAAAGACAACTTGGG 58.812 43.478 0.00 0.00 36.39 4.12
256 262 4.081365 GGGAAAAACAAAGACAACTTGGGA 60.081 41.667 0.00 0.00 36.39 4.37
257 263 4.868171 GGAAAAACAAAGACAACTTGGGAC 59.132 41.667 0.00 0.00 36.39 4.46
258 264 5.474825 GAAAAACAAAGACAACTTGGGACA 58.525 37.500 0.00 0.00 36.39 4.02
259 265 4.718940 AAACAAAGACAACTTGGGACAG 57.281 40.909 0.00 0.00 42.39 3.51
260 266 3.644966 ACAAAGACAACTTGGGACAGA 57.355 42.857 0.00 0.00 42.39 3.41
261 267 4.170468 ACAAAGACAACTTGGGACAGAT 57.830 40.909 0.00 0.00 42.39 2.90
262 268 3.885297 ACAAAGACAACTTGGGACAGATG 59.115 43.478 0.00 0.00 42.39 2.90
263 269 4.136796 CAAAGACAACTTGGGACAGATGA 58.863 43.478 0.00 0.00 42.39 2.92
264 270 4.437682 AAGACAACTTGGGACAGATGAA 57.562 40.909 0.00 0.00 42.39 2.57
265 271 4.437682 AGACAACTTGGGACAGATGAAA 57.562 40.909 0.00 0.00 42.39 2.69
266 272 4.137543 AGACAACTTGGGACAGATGAAAC 58.862 43.478 0.00 0.00 42.39 2.78
267 273 3.882888 GACAACTTGGGACAGATGAAACA 59.117 43.478 0.00 0.00 42.39 2.83
268 274 4.277476 ACAACTTGGGACAGATGAAACAA 58.723 39.130 0.00 0.00 42.39 2.83
269 275 4.709397 ACAACTTGGGACAGATGAAACAAA 59.291 37.500 0.00 0.00 42.39 2.83
270 276 4.918810 ACTTGGGACAGATGAAACAAAC 57.081 40.909 0.00 0.00 42.39 2.93
271 277 4.277476 ACTTGGGACAGATGAAACAAACA 58.723 39.130 0.00 0.00 42.39 2.83
272 278 4.895297 ACTTGGGACAGATGAAACAAACAT 59.105 37.500 0.00 0.00 42.39 2.71
273 279 5.010012 ACTTGGGACAGATGAAACAAACATC 59.990 40.000 0.00 0.00 42.39 3.06
274 280 3.501828 TGGGACAGATGAAACAAACATCG 59.498 43.478 0.00 0.00 45.77 3.84
275 281 3.502211 GGGACAGATGAAACAAACATCGT 59.498 43.478 0.00 0.00 45.77 3.73
276 282 4.023193 GGGACAGATGAAACAAACATCGTT 60.023 41.667 0.00 0.00 45.77 3.85
277 283 4.911610 GGACAGATGAAACAAACATCGTTG 59.088 41.667 0.00 0.00 45.77 4.10
278 284 5.277779 GGACAGATGAAACAAACATCGTTGA 60.278 40.000 0.00 0.00 45.77 3.18
279 285 5.751680 ACAGATGAAACAAACATCGTTGAG 58.248 37.500 0.00 0.00 45.77 3.02
280 286 5.527214 ACAGATGAAACAAACATCGTTGAGA 59.473 36.000 0.00 0.00 45.77 3.27
281 287 6.075918 CAGATGAAACAAACATCGTTGAGAG 58.924 40.000 0.00 0.00 45.77 3.20
282 288 5.991606 AGATGAAACAAACATCGTTGAGAGA 59.008 36.000 0.00 0.00 45.77 3.10
283 289 6.483307 AGATGAAACAAACATCGTTGAGAGAA 59.517 34.615 0.00 0.00 45.77 2.87
284 290 5.806286 TGAAACAAACATCGTTGAGAGAAC 58.194 37.500 0.00 0.00 32.59 3.01
285 291 5.584649 TGAAACAAACATCGTTGAGAGAACT 59.415 36.000 0.00 0.00 32.59 3.01
286 292 6.093495 TGAAACAAACATCGTTGAGAGAACTT 59.907 34.615 0.00 0.00 32.59 2.66
287 293 7.279090 TGAAACAAACATCGTTGAGAGAACTTA 59.721 33.333 0.00 0.00 32.59 2.24
288 294 6.771188 ACAAACATCGTTGAGAGAACTTAG 57.229 37.500 0.00 0.00 32.59 2.18
289 295 6.513180 ACAAACATCGTTGAGAGAACTTAGA 58.487 36.000 0.00 0.00 32.59 2.10
290 296 6.984474 ACAAACATCGTTGAGAGAACTTAGAA 59.016 34.615 0.00 0.00 32.59 2.10
291 297 7.494625 ACAAACATCGTTGAGAGAACTTAGAAA 59.505 33.333 0.00 0.00 32.59 2.52
292 298 8.499162 CAAACATCGTTGAGAGAACTTAGAAAT 58.501 33.333 0.00 0.00 0.00 2.17
293 299 7.588143 ACATCGTTGAGAGAACTTAGAAATG 57.412 36.000 0.00 0.00 0.00 2.32
294 300 7.378966 ACATCGTTGAGAGAACTTAGAAATGA 58.621 34.615 0.00 0.00 0.00 2.57
295 301 8.037758 ACATCGTTGAGAGAACTTAGAAATGAT 58.962 33.333 0.00 0.00 0.00 2.45
296 302 8.538856 CATCGTTGAGAGAACTTAGAAATGATC 58.461 37.037 0.00 0.00 0.00 2.92
297 303 7.831753 TCGTTGAGAGAACTTAGAAATGATCT 58.168 34.615 0.00 0.00 42.48 2.75
298 304 8.307483 TCGTTGAGAGAACTTAGAAATGATCTT 58.693 33.333 0.00 0.00 39.71 2.40
299 305 8.379161 CGTTGAGAGAACTTAGAAATGATCTTG 58.621 37.037 0.00 0.00 39.71 3.02
300 306 7.840342 TGAGAGAACTTAGAAATGATCTTGC 57.160 36.000 0.00 0.00 39.71 4.01
301 307 6.533012 TGAGAGAACTTAGAAATGATCTTGCG 59.467 38.462 0.00 0.00 39.71 4.85
302 308 5.814705 AGAGAACTTAGAAATGATCTTGCGG 59.185 40.000 0.00 0.00 39.71 5.69
303 309 5.734720 AGAACTTAGAAATGATCTTGCGGA 58.265 37.500 0.00 0.00 39.71 5.54
304 310 6.352516 AGAACTTAGAAATGATCTTGCGGAT 58.647 36.000 0.00 0.00 39.71 4.18
305 311 5.998454 ACTTAGAAATGATCTTGCGGATG 57.002 39.130 0.00 0.00 39.71 3.51
306 312 5.431765 ACTTAGAAATGATCTTGCGGATGT 58.568 37.500 0.00 0.00 39.71 3.06
307 313 5.882557 ACTTAGAAATGATCTTGCGGATGTT 59.117 36.000 0.00 0.00 39.71 2.71
308 314 4.627611 AGAAATGATCTTGCGGATGTTG 57.372 40.909 0.00 0.00 33.39 3.33
309 315 4.264253 AGAAATGATCTTGCGGATGTTGA 58.736 39.130 0.00 0.00 33.39 3.18
310 316 4.701651 AGAAATGATCTTGCGGATGTTGAA 59.298 37.500 0.00 0.00 33.39 2.69
311 317 5.183713 AGAAATGATCTTGCGGATGTTGAAA 59.816 36.000 0.00 0.00 33.39 2.69
312 318 5.389859 AATGATCTTGCGGATGTTGAAAA 57.610 34.783 0.00 0.00 34.33 2.29
313 319 5.587388 ATGATCTTGCGGATGTTGAAAAT 57.413 34.783 0.00 0.00 34.33 1.82
314 320 4.735985 TGATCTTGCGGATGTTGAAAATG 58.264 39.130 0.00 0.00 34.33 2.32
315 321 4.458642 TGATCTTGCGGATGTTGAAAATGA 59.541 37.500 0.00 0.00 34.33 2.57
316 322 5.125900 TGATCTTGCGGATGTTGAAAATGAT 59.874 36.000 0.00 0.00 34.33 2.45
317 323 4.985413 TCTTGCGGATGTTGAAAATGATC 58.015 39.130 0.00 0.00 0.00 2.92
318 324 3.403613 TGCGGATGTTGAAAATGATCG 57.596 42.857 0.00 0.00 0.00 3.69
319 325 2.097304 TGCGGATGTTGAAAATGATCGG 59.903 45.455 0.00 0.00 0.00 4.18
320 326 2.354510 GCGGATGTTGAAAATGATCGGA 59.645 45.455 0.00 0.00 0.00 4.55
321 327 3.003689 GCGGATGTTGAAAATGATCGGAT 59.996 43.478 0.00 0.00 0.00 4.18
322 328 4.776743 CGGATGTTGAAAATGATCGGATC 58.223 43.478 11.07 11.07 0.00 3.36
323 329 4.319766 CGGATGTTGAAAATGATCGGATCC 60.320 45.833 15.06 0.00 0.00 3.36
324 330 4.580167 GGATGTTGAAAATGATCGGATCCA 59.420 41.667 13.41 2.96 0.00 3.41
325 331 4.963276 TGTTGAAAATGATCGGATCCAC 57.037 40.909 13.41 3.08 0.00 4.02
326 332 4.588899 TGTTGAAAATGATCGGATCCACT 58.411 39.130 13.41 0.00 0.00 4.00
327 333 5.009631 TGTTGAAAATGATCGGATCCACTT 58.990 37.500 13.41 5.55 0.00 3.16
328 334 5.106197 TGTTGAAAATGATCGGATCCACTTG 60.106 40.000 13.41 0.00 0.00 3.16
329 335 4.842574 TGAAAATGATCGGATCCACTTGA 58.157 39.130 13.41 0.43 0.00 3.02
330 336 5.252547 TGAAAATGATCGGATCCACTTGAA 58.747 37.500 13.41 0.00 0.00 2.69
331 337 5.355071 TGAAAATGATCGGATCCACTTGAAG 59.645 40.000 13.41 0.00 0.00 3.02
332 338 4.760530 AATGATCGGATCCACTTGAAGA 57.239 40.909 13.41 0.00 0.00 2.87
333 339 3.808466 TGATCGGATCCACTTGAAGAG 57.192 47.619 13.41 0.00 0.00 2.85
334 340 3.365472 TGATCGGATCCACTTGAAGAGA 58.635 45.455 13.41 0.00 0.00 3.10
335 341 3.769300 TGATCGGATCCACTTGAAGAGAA 59.231 43.478 13.41 0.00 0.00 2.87
336 342 4.222810 TGATCGGATCCACTTGAAGAGAAA 59.777 41.667 13.41 0.00 0.00 2.52
337 343 3.926616 TCGGATCCACTTGAAGAGAAAC 58.073 45.455 13.41 0.00 0.00 2.78
338 344 3.323691 TCGGATCCACTTGAAGAGAAACA 59.676 43.478 13.41 0.00 0.00 2.83
339 345 3.433615 CGGATCCACTTGAAGAGAAACAC 59.566 47.826 13.41 0.00 0.00 3.32
340 346 4.389374 GGATCCACTTGAAGAGAAACACA 58.611 43.478 6.95 0.00 0.00 3.72
341 347 4.214332 GGATCCACTTGAAGAGAAACACAC 59.786 45.833 6.95 0.00 0.00 3.82
342 348 3.541632 TCCACTTGAAGAGAAACACACC 58.458 45.455 0.00 0.00 0.00 4.16
343 349 2.287915 CCACTTGAAGAGAAACACACCG 59.712 50.000 0.00 0.00 0.00 4.94
344 350 2.287915 CACTTGAAGAGAAACACACCGG 59.712 50.000 0.00 0.00 0.00 5.28
345 351 2.093128 ACTTGAAGAGAAACACACCGGT 60.093 45.455 0.00 0.00 0.00 5.28
346 352 2.702592 TGAAGAGAAACACACCGGTT 57.297 45.000 2.97 0.00 0.00 4.44
347 353 2.285083 TGAAGAGAAACACACCGGTTG 58.715 47.619 2.97 9.91 0.00 3.77
348 354 2.093394 TGAAGAGAAACACACCGGTTGA 60.093 45.455 19.38 0.00 0.00 3.18
349 355 2.702592 AGAGAAACACACCGGTTGAA 57.297 45.000 19.38 0.00 0.00 2.69
350 356 2.993937 AGAGAAACACACCGGTTGAAA 58.006 42.857 19.38 0.00 0.00 2.69
351 357 3.349022 AGAGAAACACACCGGTTGAAAA 58.651 40.909 19.38 0.00 0.00 2.29
352 358 3.377172 AGAGAAACACACCGGTTGAAAAG 59.623 43.478 19.38 4.95 0.00 2.27
353 359 2.425668 AGAAACACACCGGTTGAAAAGG 59.574 45.455 19.38 4.27 0.00 3.11
354 360 2.131776 AACACACCGGTTGAAAAGGA 57.868 45.000 19.38 0.00 0.00 3.36
355 361 2.358322 ACACACCGGTTGAAAAGGAT 57.642 45.000 19.38 0.00 0.00 3.24
356 362 2.661718 ACACACCGGTTGAAAAGGATT 58.338 42.857 19.38 0.00 0.00 3.01
357 363 2.360801 ACACACCGGTTGAAAAGGATTG 59.639 45.455 19.38 1.80 0.00 2.67
358 364 2.621055 CACACCGGTTGAAAAGGATTGA 59.379 45.455 2.97 0.00 0.00 2.57
359 365 2.621526 ACACCGGTTGAAAAGGATTGAC 59.378 45.455 2.97 0.00 0.00 3.18
360 366 2.621055 CACCGGTTGAAAAGGATTGACA 59.379 45.455 2.97 0.00 0.00 3.58
361 367 3.255642 CACCGGTTGAAAAGGATTGACAT 59.744 43.478 2.97 0.00 0.00 3.06
362 368 3.255642 ACCGGTTGAAAAGGATTGACATG 59.744 43.478 0.00 0.00 0.00 3.21
363 369 3.505680 CCGGTTGAAAAGGATTGACATGA 59.494 43.478 0.00 0.00 0.00 3.07
364 370 4.475944 CGGTTGAAAAGGATTGACATGAC 58.524 43.478 0.00 0.00 0.00 3.06
365 371 4.023279 CGGTTGAAAAGGATTGACATGACA 60.023 41.667 0.00 0.00 0.00 3.58
366 372 5.507149 CGGTTGAAAAGGATTGACATGACAA 60.507 40.000 12.85 12.85 0.00 3.18
367 373 6.458210 GGTTGAAAAGGATTGACATGACAAT 58.542 36.000 20.81 20.81 42.19 2.71
379 385 8.843885 ATTGACATGACAATCTCGATTATCAT 57.156 30.769 16.17 7.42 43.46 2.45
384 390 7.902387 ATGACAATCTCGATTATCATGAAGG 57.098 36.000 11.45 0.00 41.74 3.46
385 391 7.054491 TGACAATCTCGATTATCATGAAGGA 57.946 36.000 0.00 0.00 30.09 3.36
386 392 7.674120 TGACAATCTCGATTATCATGAAGGAT 58.326 34.615 0.00 0.00 30.09 3.24
387 393 8.152898 TGACAATCTCGATTATCATGAAGGATT 58.847 33.333 0.00 0.18 30.09 3.01
388 394 9.645059 GACAATCTCGATTATCATGAAGGATTA 57.355 33.333 0.00 0.00 0.00 1.75
389 395 9.650539 ACAATCTCGATTATCATGAAGGATTAG 57.349 33.333 0.00 0.00 0.00 1.73
390 396 9.650539 CAATCTCGATTATCATGAAGGATTAGT 57.349 33.333 0.00 0.00 0.00 2.24
416 422 6.902224 TCACATACAAATATGAGAACACCG 57.098 37.500 1.40 0.00 40.75 4.94
417 423 5.293324 TCACATACAAATATGAGAACACCGC 59.707 40.000 1.40 0.00 40.75 5.68
418 424 5.294306 CACATACAAATATGAGAACACCGCT 59.706 40.000 1.40 0.00 40.75 5.52
419 425 5.880332 ACATACAAATATGAGAACACCGCTT 59.120 36.000 1.40 0.00 40.75 4.68
420 426 7.011016 CACATACAAATATGAGAACACCGCTTA 59.989 37.037 1.40 0.00 40.75 3.09
421 427 7.224753 ACATACAAATATGAGAACACCGCTTAG 59.775 37.037 1.40 0.00 40.75 2.18
422 428 7.307396 CATACAAATATGAGAACACCGCTTAGG 60.307 40.741 0.00 0.00 42.57 2.69
423 429 5.116180 CAAATATGAGAACACCGCTTAGGA 58.884 41.667 0.00 0.00 45.00 2.94
424 430 5.353394 AATATGAGAACACCGCTTAGGAA 57.647 39.130 0.00 0.00 45.00 3.36
425 431 3.695830 ATGAGAACACCGCTTAGGAAA 57.304 42.857 0.00 0.00 45.00 3.13
426 432 3.040147 TGAGAACACCGCTTAGGAAAG 57.960 47.619 0.00 0.00 45.00 2.62
427 433 2.289444 TGAGAACACCGCTTAGGAAAGG 60.289 50.000 0.00 0.00 45.00 3.11
428 434 1.697982 AGAACACCGCTTAGGAAAGGT 59.302 47.619 0.00 0.00 45.00 3.50
429 435 2.901839 AGAACACCGCTTAGGAAAGGTA 59.098 45.455 0.00 0.00 45.00 3.08
430 436 3.518303 AGAACACCGCTTAGGAAAGGTAT 59.482 43.478 0.00 0.00 45.00 2.73
431 437 3.538634 ACACCGCTTAGGAAAGGTATC 57.461 47.619 0.00 0.00 45.00 2.24
432 438 2.159142 ACACCGCTTAGGAAAGGTATCG 60.159 50.000 0.00 0.00 45.00 2.92
433 439 2.100252 CACCGCTTAGGAAAGGTATCGA 59.900 50.000 0.00 0.00 45.00 3.59
434 440 2.762327 ACCGCTTAGGAAAGGTATCGAA 59.238 45.455 0.00 0.00 45.00 3.71
435 441 3.387050 ACCGCTTAGGAAAGGTATCGAAT 59.613 43.478 0.00 0.00 45.00 3.34
436 442 3.988517 CCGCTTAGGAAAGGTATCGAATC 59.011 47.826 0.00 0.00 45.00 2.52
437 443 4.500887 CCGCTTAGGAAAGGTATCGAATCA 60.501 45.833 0.00 0.00 45.00 2.57
438 444 4.444720 CGCTTAGGAAAGGTATCGAATCAC 59.555 45.833 0.00 0.00 32.98 3.06
439 445 5.357257 GCTTAGGAAAGGTATCGAATCACA 58.643 41.667 0.00 0.00 32.98 3.58
440 446 5.234543 GCTTAGGAAAGGTATCGAATCACAC 59.765 44.000 0.00 0.00 32.98 3.82
441 447 6.540438 TTAGGAAAGGTATCGAATCACACT 57.460 37.500 0.00 0.00 0.00 3.55
442 448 5.422214 AGGAAAGGTATCGAATCACACTT 57.578 39.130 0.00 0.00 0.00 3.16
443 449 5.178797 AGGAAAGGTATCGAATCACACTTG 58.821 41.667 0.00 0.00 0.00 3.16
444 450 5.046591 AGGAAAGGTATCGAATCACACTTGA 60.047 40.000 0.00 0.00 35.73 3.02
445 451 5.063564 GGAAAGGTATCGAATCACACTTGAC 59.936 44.000 0.00 0.00 33.38 3.18
446 452 5.407407 AAGGTATCGAATCACACTTGACT 57.593 39.130 0.00 0.00 33.38 3.41
447 453 5.407407 AGGTATCGAATCACACTTGACTT 57.593 39.130 0.00 0.00 33.38 3.01
448 454 5.411781 AGGTATCGAATCACACTTGACTTC 58.588 41.667 0.00 0.00 33.38 3.01
449 455 4.265556 GGTATCGAATCACACTTGACTTCG 59.734 45.833 0.00 10.40 40.41 3.79
450 456 3.636282 TCGAATCACACTTGACTTCGA 57.364 42.857 13.21 13.21 42.67 3.71
451 457 3.972403 TCGAATCACACTTGACTTCGAA 58.028 40.909 14.13 0.00 42.36 3.71
452 458 3.981416 TCGAATCACACTTGACTTCGAAG 59.019 43.478 23.43 23.43 42.36 3.79
453 459 3.422343 CGAATCACACTTGACTTCGAAGC 60.422 47.826 24.86 17.18 40.92 3.86
454 460 2.595124 TCACACTTGACTTCGAAGCA 57.405 45.000 24.86 19.45 0.00 3.91
455 461 2.899976 TCACACTTGACTTCGAAGCAA 58.100 42.857 24.86 24.28 0.00 3.91
456 462 2.607635 TCACACTTGACTTCGAAGCAAC 59.392 45.455 24.86 16.12 0.00 4.17
457 463 2.609459 CACACTTGACTTCGAAGCAACT 59.391 45.455 24.86 14.46 0.00 3.16
458 464 2.866762 ACACTTGACTTCGAAGCAACTC 59.133 45.455 24.86 14.89 0.00 3.01
459 465 2.097202 CACTTGACTTCGAAGCAACTCG 60.097 50.000 24.86 17.58 40.25 4.18
460 466 2.223735 ACTTGACTTCGAAGCAACTCGA 60.224 45.455 24.86 13.16 45.71 4.04
467 473 2.602878 TCGAAGCAACTCGAATACCAC 58.397 47.619 3.43 0.00 44.49 4.16
468 474 2.029739 TCGAAGCAACTCGAATACCACA 60.030 45.455 3.43 0.00 44.49 4.17
469 475 2.734606 CGAAGCAACTCGAATACCACAA 59.265 45.455 0.00 0.00 41.44 3.33
470 476 3.423123 CGAAGCAACTCGAATACCACAAC 60.423 47.826 0.00 0.00 41.44 3.32
471 477 3.402628 AGCAACTCGAATACCACAACT 57.597 42.857 0.00 0.00 0.00 3.16
472 478 3.326747 AGCAACTCGAATACCACAACTC 58.673 45.455 0.00 0.00 0.00 3.01
473 479 3.064207 GCAACTCGAATACCACAACTCA 58.936 45.455 0.00 0.00 0.00 3.41
474 480 3.496884 GCAACTCGAATACCACAACTCAA 59.503 43.478 0.00 0.00 0.00 3.02
475 481 4.024387 GCAACTCGAATACCACAACTCAAA 60.024 41.667 0.00 0.00 0.00 2.69
476 482 5.504994 GCAACTCGAATACCACAACTCAAAA 60.505 40.000 0.00 0.00 0.00 2.44
477 483 5.668558 ACTCGAATACCACAACTCAAAAC 57.331 39.130 0.00 0.00 0.00 2.43
478 484 5.120399 ACTCGAATACCACAACTCAAAACA 58.880 37.500 0.00 0.00 0.00 2.83
479 485 5.587043 ACTCGAATACCACAACTCAAAACAA 59.413 36.000 0.00 0.00 0.00 2.83
480 486 6.055231 TCGAATACCACAACTCAAAACAAG 57.945 37.500 0.00 0.00 0.00 3.16
481 487 5.818336 TCGAATACCACAACTCAAAACAAGA 59.182 36.000 0.00 0.00 0.00 3.02
482 488 5.907391 CGAATACCACAACTCAAAACAAGAC 59.093 40.000 0.00 0.00 0.00 3.01
483 489 6.457663 CGAATACCACAACTCAAAACAAGACA 60.458 38.462 0.00 0.00 0.00 3.41
484 490 6.767524 ATACCACAACTCAAAACAAGACAA 57.232 33.333 0.00 0.00 0.00 3.18
485 491 5.461032 ACCACAACTCAAAACAAGACAAA 57.539 34.783 0.00 0.00 0.00 2.83
486 492 5.469479 ACCACAACTCAAAACAAGACAAAG 58.531 37.500 0.00 0.00 0.00 2.77
487 493 4.864247 CCACAACTCAAAACAAGACAAAGG 59.136 41.667 0.00 0.00 0.00 3.11
488 494 5.336372 CCACAACTCAAAACAAGACAAAGGA 60.336 40.000 0.00 0.00 0.00 3.36
489 495 6.332630 CACAACTCAAAACAAGACAAAGGAT 58.667 36.000 0.00 0.00 0.00 3.24
490 496 6.813152 CACAACTCAAAACAAGACAAAGGATT 59.187 34.615 0.00 0.00 0.00 3.01
491 497 6.813152 ACAACTCAAAACAAGACAAAGGATTG 59.187 34.615 0.00 0.00 42.46 2.67
492 498 5.906073 ACTCAAAACAAGACAAAGGATTGG 58.094 37.500 0.00 0.00 41.01 3.16
493 499 4.692228 TCAAAACAAGACAAAGGATTGGC 58.308 39.130 0.00 0.00 45.54 4.52
505 511 8.917415 GACAAAGGATTGGCTTAGAAAATAAG 57.083 34.615 0.00 0.00 41.66 1.73
506 512 7.323420 ACAAAGGATTGGCTTAGAAAATAAGC 58.677 34.615 10.44 10.44 46.64 3.09
513 519 4.957759 GCTTAGAAAATAAGCCGGAACA 57.042 40.909 5.05 0.00 42.88 3.18
514 520 5.305139 GCTTAGAAAATAAGCCGGAACAA 57.695 39.130 5.05 0.00 42.88 2.83
515 521 5.705902 GCTTAGAAAATAAGCCGGAACAAA 58.294 37.500 5.05 0.00 42.88 2.83
516 522 5.571741 GCTTAGAAAATAAGCCGGAACAAAC 59.428 40.000 5.05 0.00 42.88 2.93
517 523 6.636562 TTAGAAAATAAGCCGGAACAAACA 57.363 33.333 5.05 0.00 0.00 2.83
518 524 5.722021 AGAAAATAAGCCGGAACAAACAT 57.278 34.783 5.05 0.00 0.00 2.71
519 525 6.827586 AGAAAATAAGCCGGAACAAACATA 57.172 33.333 5.05 0.00 0.00 2.29
520 526 7.404671 AGAAAATAAGCCGGAACAAACATAT 57.595 32.000 5.05 0.00 0.00 1.78
521 527 7.257722 AGAAAATAAGCCGGAACAAACATATG 58.742 34.615 5.05 0.00 0.00 1.78
522 528 6.767524 AAATAAGCCGGAACAAACATATGA 57.232 33.333 5.05 0.00 0.00 2.15
523 529 6.959639 AATAAGCCGGAACAAACATATGAT 57.040 33.333 5.05 0.00 0.00 2.45
524 530 8.458573 AAATAAGCCGGAACAAACATATGATA 57.541 30.769 5.05 0.00 0.00 2.15
525 531 7.672983 ATAAGCCGGAACAAACATATGATAG 57.327 36.000 5.05 0.68 0.00 2.08
526 532 5.290493 AGCCGGAACAAACATATGATAGA 57.710 39.130 5.05 0.00 0.00 1.98
527 533 5.869579 AGCCGGAACAAACATATGATAGAT 58.130 37.500 5.05 0.00 0.00 1.98
528 534 5.934625 AGCCGGAACAAACATATGATAGATC 59.065 40.000 5.05 2.21 0.00 2.75
529 535 5.122396 GCCGGAACAAACATATGATAGATCC 59.878 44.000 5.05 10.05 0.00 3.36
530 536 5.643777 CCGGAACAAACATATGATAGATCCC 59.356 44.000 10.38 1.69 0.00 3.85
531 537 5.348724 CGGAACAAACATATGATAGATCCCG 59.651 44.000 10.38 9.67 0.00 5.14
532 538 6.231211 GGAACAAACATATGATAGATCCCGT 58.769 40.000 10.38 0.00 0.00 5.28
533 539 7.383687 GGAACAAACATATGATAGATCCCGTA 58.616 38.462 10.38 0.00 0.00 4.02
534 540 8.041323 GGAACAAACATATGATAGATCCCGTAT 58.959 37.037 10.38 0.00 0.00 3.06
535 541 9.088512 GAACAAACATATGATAGATCCCGTATC 57.911 37.037 10.38 0.00 34.52 2.24
536 542 7.258441 ACAAACATATGATAGATCCCGTATCG 58.742 38.462 10.38 0.00 39.79 2.92
537 543 7.093902 ACAAACATATGATAGATCCCGTATCGT 60.094 37.037 10.38 0.00 39.79 3.73
538 544 8.403236 CAAACATATGATAGATCCCGTATCGTA 58.597 37.037 10.38 5.37 39.79 3.43
539 545 8.693120 AACATATGATAGATCCCGTATCGTAT 57.307 34.615 10.38 8.41 38.68 3.06
540 546 8.325421 ACATATGATAGATCCCGTATCGTATC 57.675 38.462 10.38 1.63 37.14 2.24
541 547 7.937394 ACATATGATAGATCCCGTATCGTATCA 59.063 37.037 10.38 6.07 37.14 2.15
542 548 8.951243 CATATGATAGATCCCGTATCGTATCAT 58.049 37.037 19.44 19.44 41.71 2.45
543 549 6.619801 TGATAGATCCCGTATCGTATCATG 57.380 41.667 0.00 0.00 39.79 3.07
544 550 6.120220 TGATAGATCCCGTATCGTATCATGT 58.880 40.000 0.00 0.00 39.79 3.21
545 551 4.703645 AGATCCCGTATCGTATCATGTG 57.296 45.455 0.00 0.00 39.79 3.21
546 552 4.079970 AGATCCCGTATCGTATCATGTGT 58.920 43.478 0.00 0.00 39.79 3.72
547 553 3.909776 TCCCGTATCGTATCATGTGTC 57.090 47.619 0.00 0.00 0.00 3.67
548 554 3.483421 TCCCGTATCGTATCATGTGTCT 58.517 45.455 0.00 0.00 0.00 3.41
549 555 3.252458 TCCCGTATCGTATCATGTGTCTG 59.748 47.826 0.00 0.00 0.00 3.51
550 556 3.004419 CCCGTATCGTATCATGTGTCTGT 59.996 47.826 0.00 0.00 0.00 3.41
551 557 4.499188 CCCGTATCGTATCATGTGTCTGTT 60.499 45.833 0.00 0.00 0.00 3.16
552 558 4.441087 CCGTATCGTATCATGTGTCTGTTG 59.559 45.833 0.00 0.00 0.00 3.33
553 559 4.441087 CGTATCGTATCATGTGTCTGTTGG 59.559 45.833 0.00 0.00 0.00 3.77
554 560 4.736126 ATCGTATCATGTGTCTGTTGGA 57.264 40.909 0.00 0.00 0.00 3.53
555 561 4.529109 TCGTATCATGTGTCTGTTGGAA 57.471 40.909 0.00 0.00 0.00 3.53
556 562 4.888917 TCGTATCATGTGTCTGTTGGAAA 58.111 39.130 0.00 0.00 0.00 3.13
557 563 4.929211 TCGTATCATGTGTCTGTTGGAAAG 59.071 41.667 0.00 0.00 0.00 2.62
558 564 4.929211 CGTATCATGTGTCTGTTGGAAAGA 59.071 41.667 0.00 0.00 0.00 2.52
559 565 5.582269 CGTATCATGTGTCTGTTGGAAAGAT 59.418 40.000 0.00 0.00 0.00 2.40
619 625 2.226674 GTGCTTAGTTTTGCCCTCAGAC 59.773 50.000 0.00 0.00 0.00 3.51
627 633 0.248012 TTGCCCTCAGACGCGAATTA 59.752 50.000 15.93 0.00 0.00 1.40
634 640 2.860136 CTCAGACGCGAATTATGCTCAA 59.140 45.455 15.93 0.00 0.00 3.02
698 704 1.658114 CGTCTCCGTCAGGTCAACA 59.342 57.895 0.00 0.00 39.05 3.33
716 722 2.711542 ACATTTTGACTCGGCCCTTAG 58.288 47.619 0.00 0.00 0.00 2.18
755 761 5.106317 GGCAAAGACGGTCAATTCTATTCAA 60.106 40.000 11.27 0.00 0.00 2.69
874 951 2.419620 TGGCGACAAAGAGCACGA 59.580 55.556 0.00 0.00 37.44 4.35
903 1009 2.109739 GGCGAGAGAGAGAGCACGA 61.110 63.158 0.00 0.00 0.00 4.35
981 1117 1.626654 GCACGGTGGTGTTGAGATCG 61.627 60.000 10.60 0.00 46.13 3.69
1078 1214 1.973515 TGCCTGTCTTCATCTGTCTGT 59.026 47.619 0.00 0.00 0.00 3.41
1176 1313 1.716028 ATGGGGTAAGAATCGGGGCC 61.716 60.000 0.00 0.00 0.00 5.80
1183 1320 0.614415 AAGAATCGGGGCCATTGCAA 60.614 50.000 4.39 0.00 40.13 4.08
1411 1548 4.338118 ACACTGATAGAGAGCTAGCTGTTC 59.662 45.833 24.99 18.86 41.34 3.18
1415 1552 1.554836 AGAGAGCTAGCTGTTCAGCA 58.445 50.000 24.99 10.90 40.36 4.41
1506 1787 3.011566 TGGGCATTTGTAGGTATGGTG 57.988 47.619 0.00 0.00 0.00 4.17
1700 1994 9.404348 GAGAAGAAATGAGGAATTCAAAAACTC 57.596 33.333 7.93 4.86 39.77 3.01
1769 2067 0.521291 TTGCTCTTCGGCCAAATTCG 59.479 50.000 2.24 0.00 0.00 3.34
1859 2159 5.465935 TCTCTTGCGTGTTTTTCTGTTTTT 58.534 33.333 0.00 0.00 0.00 1.94
1934 2234 7.503566 TGGAAGCTAATTGAATTATTCCAGAGG 59.496 37.037 20.80 2.02 38.23 3.69
1939 2239 7.981225 GCTAATTGAATTATTCCAGAGGCAAAA 59.019 33.333 2.22 0.00 0.00 2.44
2061 2365 2.305635 TGGAAAATGTGCCTCAGCTCTA 59.694 45.455 0.00 0.00 40.80 2.43
2234 2562 1.746470 GTTTAGGGTTGCGCTGGTAT 58.254 50.000 9.73 0.00 0.00 2.73
2372 2708 2.239400 GGAGGGTTGGAAGGTTGAAAG 58.761 52.381 0.00 0.00 0.00 2.62
2460 2798 2.305052 GGTTTAGGGTTAGAGTGGCACT 59.695 50.000 22.26 22.26 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 7.558161 AATTCAAGCTTTGTCGATCATATCA 57.442 32.000 0.00 0.00 0.00 2.15
91 97 1.149148 GGAGCTTCAAGTTCGTCACC 58.851 55.000 0.00 0.00 0.00 4.02
125 131 5.374921 TCAATGTTTTACCCGGTGTTTCTA 58.625 37.500 0.00 0.00 0.00 2.10
133 139 6.419710 GTCTTTTCTTTCAATGTTTTACCCGG 59.580 38.462 0.00 0.00 0.00 5.73
151 157 6.276847 TGTGAGAAGTCTCTTCAGTCTTTTC 58.723 40.000 9.63 0.00 43.25 2.29
191 197 7.560368 TCTTCCAGGACTCAGATTTCTTAATC 58.440 38.462 0.00 0.00 40.42 1.75
192 198 7.502060 TCTTCCAGGACTCAGATTTCTTAAT 57.498 36.000 0.00 0.00 0.00 1.40
193 199 6.935240 TCTTCCAGGACTCAGATTTCTTAA 57.065 37.500 0.00 0.00 0.00 1.85
194 200 6.935240 TTCTTCCAGGACTCAGATTTCTTA 57.065 37.500 0.00 0.00 0.00 2.10
195 201 5.832539 TTCTTCCAGGACTCAGATTTCTT 57.167 39.130 0.00 0.00 0.00 2.52
196 202 5.832539 TTTCTTCCAGGACTCAGATTTCT 57.167 39.130 0.00 0.00 0.00 2.52
197 203 6.072230 CCTTTTTCTTCCAGGACTCAGATTTC 60.072 42.308 0.00 0.00 0.00 2.17
198 204 5.772169 CCTTTTTCTTCCAGGACTCAGATTT 59.228 40.000 0.00 0.00 0.00 2.17
199 205 5.320277 CCTTTTTCTTCCAGGACTCAGATT 58.680 41.667 0.00 0.00 0.00 2.40
200 206 4.263683 CCCTTTTTCTTCCAGGACTCAGAT 60.264 45.833 0.00 0.00 0.00 2.90
201 207 3.073062 CCCTTTTTCTTCCAGGACTCAGA 59.927 47.826 0.00 0.00 0.00 3.27
202 208 3.181439 ACCCTTTTTCTTCCAGGACTCAG 60.181 47.826 0.00 0.00 0.00 3.35
203 209 2.783510 ACCCTTTTTCTTCCAGGACTCA 59.216 45.455 0.00 0.00 0.00 3.41
204 210 3.149981 CACCCTTTTTCTTCCAGGACTC 58.850 50.000 0.00 0.00 0.00 3.36
205 211 2.158460 CCACCCTTTTTCTTCCAGGACT 60.158 50.000 0.00 0.00 0.00 3.85
206 212 2.239400 CCACCCTTTTTCTTCCAGGAC 58.761 52.381 0.00 0.00 0.00 3.85
207 213 1.146982 CCCACCCTTTTTCTTCCAGGA 59.853 52.381 0.00 0.00 0.00 3.86
208 214 1.146982 TCCCACCCTTTTTCTTCCAGG 59.853 52.381 0.00 0.00 0.00 4.45
209 215 2.519013 CTCCCACCCTTTTTCTTCCAG 58.481 52.381 0.00 0.00 0.00 3.86
210 216 1.146982 CCTCCCACCCTTTTTCTTCCA 59.853 52.381 0.00 0.00 0.00 3.53
211 217 1.550179 CCCTCCCACCCTTTTTCTTCC 60.550 57.143 0.00 0.00 0.00 3.46
212 218 1.924731 CCCTCCCACCCTTTTTCTTC 58.075 55.000 0.00 0.00 0.00 2.87
213 219 0.178932 GCCCTCCCACCCTTTTTCTT 60.179 55.000 0.00 0.00 0.00 2.52
214 220 1.465172 GCCCTCCCACCCTTTTTCT 59.535 57.895 0.00 0.00 0.00 2.52
215 221 1.977009 CGCCCTCCCACCCTTTTTC 60.977 63.158 0.00 0.00 0.00 2.29
216 222 2.117423 CGCCCTCCCACCCTTTTT 59.883 61.111 0.00 0.00 0.00 1.94
217 223 3.979497 CCGCCCTCCCACCCTTTT 61.979 66.667 0.00 0.00 0.00 2.27
222 228 3.516949 TTTTTCCCGCCCTCCCACC 62.517 63.158 0.00 0.00 0.00 4.61
223 229 2.116556 TTTTTCCCGCCCTCCCAC 59.883 61.111 0.00 0.00 0.00 4.61
224 230 2.116556 GTTTTTCCCGCCCTCCCA 59.883 61.111 0.00 0.00 0.00 4.37
225 231 1.116536 TTTGTTTTTCCCGCCCTCCC 61.117 55.000 0.00 0.00 0.00 4.30
226 232 0.317160 CTTTGTTTTTCCCGCCCTCC 59.683 55.000 0.00 0.00 0.00 4.30
227 233 1.000607 GTCTTTGTTTTTCCCGCCCTC 60.001 52.381 0.00 0.00 0.00 4.30
228 234 1.037493 GTCTTTGTTTTTCCCGCCCT 58.963 50.000 0.00 0.00 0.00 5.19
229 235 0.747852 TGTCTTTGTTTTTCCCGCCC 59.252 50.000 0.00 0.00 0.00 6.13
230 236 2.159156 AGTTGTCTTTGTTTTTCCCGCC 60.159 45.455 0.00 0.00 0.00 6.13
231 237 3.159353 AGTTGTCTTTGTTTTTCCCGC 57.841 42.857 0.00 0.00 0.00 6.13
232 238 3.862845 CCAAGTTGTCTTTGTTTTTCCCG 59.137 43.478 1.45 0.00 0.00 5.14
233 239 4.081365 TCCCAAGTTGTCTTTGTTTTTCCC 60.081 41.667 1.45 0.00 0.00 3.97
234 240 4.868171 GTCCCAAGTTGTCTTTGTTTTTCC 59.132 41.667 1.45 0.00 0.00 3.13
235 241 5.474825 TGTCCCAAGTTGTCTTTGTTTTTC 58.525 37.500 1.45 0.00 0.00 2.29
236 242 5.245075 TCTGTCCCAAGTTGTCTTTGTTTTT 59.755 36.000 1.45 0.00 0.00 1.94
237 243 4.770010 TCTGTCCCAAGTTGTCTTTGTTTT 59.230 37.500 1.45 0.00 0.00 2.43
238 244 4.340617 TCTGTCCCAAGTTGTCTTTGTTT 58.659 39.130 1.45 0.00 0.00 2.83
239 245 3.963129 TCTGTCCCAAGTTGTCTTTGTT 58.037 40.909 1.45 0.00 0.00 2.83
240 246 3.644966 TCTGTCCCAAGTTGTCTTTGT 57.355 42.857 1.45 0.00 0.00 2.83
241 247 4.136796 TCATCTGTCCCAAGTTGTCTTTG 58.863 43.478 1.45 0.00 0.00 2.77
242 248 4.437682 TCATCTGTCCCAAGTTGTCTTT 57.562 40.909 1.45 0.00 0.00 2.52
243 249 4.437682 TTCATCTGTCCCAAGTTGTCTT 57.562 40.909 1.45 0.00 0.00 3.01
244 250 4.137543 GTTTCATCTGTCCCAAGTTGTCT 58.862 43.478 1.45 0.00 0.00 3.41
245 251 3.882888 TGTTTCATCTGTCCCAAGTTGTC 59.117 43.478 1.45 0.00 0.00 3.18
246 252 3.897239 TGTTTCATCTGTCCCAAGTTGT 58.103 40.909 1.45 0.00 0.00 3.32
247 253 4.916983 TTGTTTCATCTGTCCCAAGTTG 57.083 40.909 0.00 0.00 0.00 3.16
248 254 4.709397 TGTTTGTTTCATCTGTCCCAAGTT 59.291 37.500 0.00 0.00 0.00 2.66
249 255 4.277476 TGTTTGTTTCATCTGTCCCAAGT 58.723 39.130 0.00 0.00 0.00 3.16
250 256 4.916983 TGTTTGTTTCATCTGTCCCAAG 57.083 40.909 0.00 0.00 0.00 3.61
251 257 4.023279 CGATGTTTGTTTCATCTGTCCCAA 60.023 41.667 0.00 0.00 39.36 4.12
252 258 3.501828 CGATGTTTGTTTCATCTGTCCCA 59.498 43.478 0.00 0.00 39.36 4.37
253 259 3.502211 ACGATGTTTGTTTCATCTGTCCC 59.498 43.478 0.00 0.00 39.36 4.46
254 260 4.749245 ACGATGTTTGTTTCATCTGTCC 57.251 40.909 0.00 0.00 39.36 4.02
255 261 5.747565 TCAACGATGTTTGTTTCATCTGTC 58.252 37.500 0.00 0.00 39.36 3.51
256 262 5.527214 TCTCAACGATGTTTGTTTCATCTGT 59.473 36.000 0.00 0.00 39.36 3.41
257 263 5.989249 TCTCAACGATGTTTGTTTCATCTG 58.011 37.500 0.00 0.00 39.36 2.90
258 264 5.991606 TCTCTCAACGATGTTTGTTTCATCT 59.008 36.000 0.00 0.00 39.36 2.90
259 265 6.228273 TCTCTCAACGATGTTTGTTTCATC 57.772 37.500 0.00 0.00 38.49 2.92
260 266 6.260936 AGTTCTCTCAACGATGTTTGTTTCAT 59.739 34.615 0.00 0.00 0.00 2.57
261 267 5.584649 AGTTCTCTCAACGATGTTTGTTTCA 59.415 36.000 0.00 0.00 0.00 2.69
262 268 6.049263 AGTTCTCTCAACGATGTTTGTTTC 57.951 37.500 0.00 0.00 0.00 2.78
263 269 6.436843 AAGTTCTCTCAACGATGTTTGTTT 57.563 33.333 0.00 0.00 0.00 2.83
264 270 6.984474 TCTAAGTTCTCTCAACGATGTTTGTT 59.016 34.615 0.00 0.00 0.00 2.83
265 271 6.513180 TCTAAGTTCTCTCAACGATGTTTGT 58.487 36.000 0.00 0.00 0.00 2.83
266 272 7.408132 TTCTAAGTTCTCTCAACGATGTTTG 57.592 36.000 0.00 0.00 0.00 2.93
267 273 8.499162 CATTTCTAAGTTCTCTCAACGATGTTT 58.501 33.333 0.00 0.00 0.00 2.83
268 274 7.872993 TCATTTCTAAGTTCTCTCAACGATGTT 59.127 33.333 0.00 0.00 0.00 2.71
269 275 7.378966 TCATTTCTAAGTTCTCTCAACGATGT 58.621 34.615 0.00 0.00 0.00 3.06
270 276 7.818493 TCATTTCTAAGTTCTCTCAACGATG 57.182 36.000 0.00 0.00 0.00 3.84
271 277 8.474025 AGATCATTTCTAAGTTCTCTCAACGAT 58.526 33.333 0.00 0.00 30.96 3.73
272 278 7.831753 AGATCATTTCTAAGTTCTCTCAACGA 58.168 34.615 0.00 0.00 30.96 3.85
273 279 8.379161 CAAGATCATTTCTAAGTTCTCTCAACG 58.621 37.037 0.00 0.00 33.05 4.10
274 280 8.174422 GCAAGATCATTTCTAAGTTCTCTCAAC 58.826 37.037 0.00 0.00 33.05 3.18
275 281 7.063898 CGCAAGATCATTTCTAAGTTCTCTCAA 59.936 37.037 0.00 0.00 43.02 3.02
276 282 6.533012 CGCAAGATCATTTCTAAGTTCTCTCA 59.467 38.462 0.00 0.00 43.02 3.27
277 283 6.019156 CCGCAAGATCATTTCTAAGTTCTCTC 60.019 42.308 0.00 0.00 43.02 3.20
278 284 5.814705 CCGCAAGATCATTTCTAAGTTCTCT 59.185 40.000 0.00 0.00 43.02 3.10
279 285 5.812642 TCCGCAAGATCATTTCTAAGTTCTC 59.187 40.000 0.00 0.00 43.02 2.87
280 286 5.734720 TCCGCAAGATCATTTCTAAGTTCT 58.265 37.500 0.00 0.00 43.02 3.01
281 287 6.037610 ACATCCGCAAGATCATTTCTAAGTTC 59.962 38.462 0.00 0.00 43.02 3.01
282 288 5.882557 ACATCCGCAAGATCATTTCTAAGTT 59.117 36.000 0.00 0.00 43.02 2.66
283 289 5.431765 ACATCCGCAAGATCATTTCTAAGT 58.568 37.500 0.00 0.00 43.02 2.24
284 290 5.998454 ACATCCGCAAGATCATTTCTAAG 57.002 39.130 0.00 0.00 43.02 2.18
285 291 5.879777 TCAACATCCGCAAGATCATTTCTAA 59.120 36.000 0.00 0.00 43.02 2.10
286 292 5.427378 TCAACATCCGCAAGATCATTTCTA 58.573 37.500 0.00 0.00 43.02 2.10
287 293 4.264253 TCAACATCCGCAAGATCATTTCT 58.736 39.130 0.00 0.00 43.02 2.52
288 294 4.621068 TCAACATCCGCAAGATCATTTC 57.379 40.909 0.00 0.00 43.02 2.17
289 295 5.389859 TTTCAACATCCGCAAGATCATTT 57.610 34.783 0.00 0.00 43.02 2.32
290 296 5.389859 TTTTCAACATCCGCAAGATCATT 57.610 34.783 0.00 0.00 43.02 2.57
291 297 5.125900 TCATTTTCAACATCCGCAAGATCAT 59.874 36.000 0.00 0.00 43.02 2.45
292 298 4.458642 TCATTTTCAACATCCGCAAGATCA 59.541 37.500 0.00 0.00 43.02 2.92
293 299 4.985413 TCATTTTCAACATCCGCAAGATC 58.015 39.130 0.00 0.00 43.02 2.75
294 300 5.585390 GATCATTTTCAACATCCGCAAGAT 58.415 37.500 0.00 0.00 43.02 2.40
295 301 4.437255 CGATCATTTTCAACATCCGCAAGA 60.437 41.667 0.00 0.00 43.02 3.02
296 302 3.787634 CGATCATTTTCAACATCCGCAAG 59.212 43.478 0.00 0.00 0.00 4.01
297 303 3.427368 CCGATCATTTTCAACATCCGCAA 60.427 43.478 0.00 0.00 0.00 4.85
298 304 2.097304 CCGATCATTTTCAACATCCGCA 59.903 45.455 0.00 0.00 0.00 5.69
299 305 2.354510 TCCGATCATTTTCAACATCCGC 59.645 45.455 0.00 0.00 0.00 5.54
300 306 4.319766 GGATCCGATCATTTTCAACATCCG 60.320 45.833 10.56 0.00 0.00 4.18
301 307 4.580167 TGGATCCGATCATTTTCAACATCC 59.420 41.667 7.39 0.00 0.00 3.51
302 308 5.297776 AGTGGATCCGATCATTTTCAACATC 59.702 40.000 7.39 0.00 0.00 3.06
303 309 5.195940 AGTGGATCCGATCATTTTCAACAT 58.804 37.500 7.39 0.00 0.00 2.71
304 310 4.588899 AGTGGATCCGATCATTTTCAACA 58.411 39.130 7.39 0.00 0.00 3.33
305 311 5.123820 TCAAGTGGATCCGATCATTTTCAAC 59.876 40.000 7.39 0.00 0.00 3.18
306 312 5.252547 TCAAGTGGATCCGATCATTTTCAA 58.747 37.500 7.39 0.00 0.00 2.69
307 313 4.842574 TCAAGTGGATCCGATCATTTTCA 58.157 39.130 7.39 0.00 0.00 2.69
308 314 5.586243 TCTTCAAGTGGATCCGATCATTTTC 59.414 40.000 7.39 0.00 0.00 2.29
309 315 5.500234 TCTTCAAGTGGATCCGATCATTTT 58.500 37.500 7.39 0.00 0.00 1.82
310 316 5.102953 TCTTCAAGTGGATCCGATCATTT 57.897 39.130 7.39 0.00 0.00 2.32
311 317 4.406972 TCTCTTCAAGTGGATCCGATCATT 59.593 41.667 7.39 0.00 0.00 2.57
312 318 3.963374 TCTCTTCAAGTGGATCCGATCAT 59.037 43.478 7.39 0.00 0.00 2.45
313 319 3.365472 TCTCTTCAAGTGGATCCGATCA 58.635 45.455 7.39 0.00 0.00 2.92
314 320 4.392921 TTCTCTTCAAGTGGATCCGATC 57.607 45.455 7.39 0.00 0.00 3.69
315 321 4.020218 TGTTTCTCTTCAAGTGGATCCGAT 60.020 41.667 7.39 0.00 0.00 4.18
316 322 3.323691 TGTTTCTCTTCAAGTGGATCCGA 59.676 43.478 7.39 0.00 0.00 4.55
317 323 3.433615 GTGTTTCTCTTCAAGTGGATCCG 59.566 47.826 7.39 0.00 0.00 4.18
318 324 4.214332 GTGTGTTTCTCTTCAAGTGGATCC 59.786 45.833 4.20 4.20 0.00 3.36
319 325 4.214332 GGTGTGTTTCTCTTCAAGTGGATC 59.786 45.833 0.00 0.00 0.00 3.36
320 326 4.137543 GGTGTGTTTCTCTTCAAGTGGAT 58.862 43.478 0.00 0.00 0.00 3.41
321 327 3.541632 GGTGTGTTTCTCTTCAAGTGGA 58.458 45.455 0.00 0.00 0.00 4.02
322 328 2.287915 CGGTGTGTTTCTCTTCAAGTGG 59.712 50.000 0.00 0.00 0.00 4.00
323 329 2.287915 CCGGTGTGTTTCTCTTCAAGTG 59.712 50.000 0.00 0.00 0.00 3.16
324 330 2.093128 ACCGGTGTGTTTCTCTTCAAGT 60.093 45.455 6.12 0.00 0.00 3.16
325 331 2.561569 ACCGGTGTGTTTCTCTTCAAG 58.438 47.619 6.12 0.00 0.00 3.02
326 332 2.680841 CAACCGGTGTGTTTCTCTTCAA 59.319 45.455 8.52 0.00 0.00 2.69
327 333 2.093394 TCAACCGGTGTGTTTCTCTTCA 60.093 45.455 8.52 0.00 0.00 3.02
328 334 2.557317 TCAACCGGTGTGTTTCTCTTC 58.443 47.619 8.52 0.00 0.00 2.87
329 335 2.702592 TCAACCGGTGTGTTTCTCTT 57.297 45.000 8.52 0.00 0.00 2.85
330 336 2.702592 TTCAACCGGTGTGTTTCTCT 57.297 45.000 8.52 0.00 0.00 3.10
331 337 3.488553 CCTTTTCAACCGGTGTGTTTCTC 60.489 47.826 8.52 0.00 0.00 2.87
332 338 2.425668 CCTTTTCAACCGGTGTGTTTCT 59.574 45.455 8.52 0.00 0.00 2.52
333 339 2.424246 TCCTTTTCAACCGGTGTGTTTC 59.576 45.455 8.52 0.00 0.00 2.78
334 340 2.448453 TCCTTTTCAACCGGTGTGTTT 58.552 42.857 8.52 0.00 0.00 2.83
335 341 2.131776 TCCTTTTCAACCGGTGTGTT 57.868 45.000 8.52 0.00 0.00 3.32
336 342 2.358322 ATCCTTTTCAACCGGTGTGT 57.642 45.000 8.52 0.00 0.00 3.72
337 343 2.621055 TCAATCCTTTTCAACCGGTGTG 59.379 45.455 8.52 9.26 0.00 3.82
338 344 2.621526 GTCAATCCTTTTCAACCGGTGT 59.378 45.455 8.52 0.00 0.00 4.16
339 345 2.621055 TGTCAATCCTTTTCAACCGGTG 59.379 45.455 8.52 2.16 0.00 4.94
340 346 2.938838 TGTCAATCCTTTTCAACCGGT 58.061 42.857 0.00 0.00 0.00 5.28
341 347 3.505680 TCATGTCAATCCTTTTCAACCGG 59.494 43.478 0.00 0.00 0.00 5.28
342 348 4.023279 TGTCATGTCAATCCTTTTCAACCG 60.023 41.667 0.00 0.00 0.00 4.44
343 349 5.452078 TGTCATGTCAATCCTTTTCAACC 57.548 39.130 0.00 0.00 0.00 3.77
344 350 7.572502 GATTGTCATGTCAATCCTTTTCAAC 57.427 36.000 25.92 6.85 44.35 3.18
362 368 8.545229 AATCCTTCATGATAATCGAGATTGTC 57.455 34.615 13.40 13.40 38.78 3.18
363 369 9.650539 CTAATCCTTCATGATAATCGAGATTGT 57.349 33.333 8.46 1.78 32.50 2.71
364 370 9.650539 ACTAATCCTTCATGATAATCGAGATTG 57.349 33.333 8.46 0.00 32.50 2.67
390 396 9.040939 CGGTGTTCTCATATTTGTATGTGAATA 57.959 33.333 12.98 9.44 40.09 1.75
391 397 7.467267 GCGGTGTTCTCATATTTGTATGTGAAT 60.467 37.037 12.98 0.00 40.09 2.57
392 398 6.183360 GCGGTGTTCTCATATTTGTATGTGAA 60.183 38.462 8.17 8.17 37.51 3.18
393 399 5.293324 GCGGTGTTCTCATATTTGTATGTGA 59.707 40.000 0.00 0.00 31.94 3.58
394 400 5.294306 AGCGGTGTTCTCATATTTGTATGTG 59.706 40.000 0.00 0.00 0.00 3.21
395 401 5.428253 AGCGGTGTTCTCATATTTGTATGT 58.572 37.500 0.00 0.00 0.00 2.29
396 402 5.991328 AGCGGTGTTCTCATATTTGTATG 57.009 39.130 0.00 0.00 0.00 2.39
397 403 6.706270 CCTAAGCGGTGTTCTCATATTTGTAT 59.294 38.462 0.00 0.00 0.00 2.29
398 404 6.046593 CCTAAGCGGTGTTCTCATATTTGTA 58.953 40.000 0.00 0.00 0.00 2.41
399 405 4.876107 CCTAAGCGGTGTTCTCATATTTGT 59.124 41.667 0.00 0.00 0.00 2.83
400 406 5.116180 TCCTAAGCGGTGTTCTCATATTTG 58.884 41.667 0.00 0.00 0.00 2.32
401 407 5.353394 TCCTAAGCGGTGTTCTCATATTT 57.647 39.130 0.00 0.00 0.00 1.40
402 408 5.353394 TTCCTAAGCGGTGTTCTCATATT 57.647 39.130 0.00 0.00 0.00 1.28
403 409 5.353394 TTTCCTAAGCGGTGTTCTCATAT 57.647 39.130 0.00 0.00 0.00 1.78
404 410 4.382685 CCTTTCCTAAGCGGTGTTCTCATA 60.383 45.833 0.00 0.00 0.00 2.15
405 411 3.600388 CTTTCCTAAGCGGTGTTCTCAT 58.400 45.455 0.00 0.00 0.00 2.90
406 412 2.289444 CCTTTCCTAAGCGGTGTTCTCA 60.289 50.000 0.00 0.00 0.00 3.27
407 413 2.289506 ACCTTTCCTAAGCGGTGTTCTC 60.290 50.000 0.00 0.00 0.00 2.87
408 414 1.697982 ACCTTTCCTAAGCGGTGTTCT 59.302 47.619 0.00 0.00 0.00 3.01
409 415 2.180432 ACCTTTCCTAAGCGGTGTTC 57.820 50.000 0.00 0.00 0.00 3.18
410 416 3.677976 CGATACCTTTCCTAAGCGGTGTT 60.678 47.826 0.00 0.00 0.00 3.32
411 417 2.159142 CGATACCTTTCCTAAGCGGTGT 60.159 50.000 0.00 0.00 0.00 4.16
412 418 2.100252 TCGATACCTTTCCTAAGCGGTG 59.900 50.000 0.00 0.00 0.00 4.94
413 419 2.381911 TCGATACCTTTCCTAAGCGGT 58.618 47.619 0.00 0.00 0.00 5.68
414 420 3.447918 TTCGATACCTTTCCTAAGCGG 57.552 47.619 0.00 0.00 0.00 5.52
415 421 4.444720 GTGATTCGATACCTTTCCTAAGCG 59.555 45.833 0.00 0.00 0.00 4.68
416 422 5.234543 GTGTGATTCGATACCTTTCCTAAGC 59.765 44.000 0.00 0.00 0.00 3.09
417 423 6.574350 AGTGTGATTCGATACCTTTCCTAAG 58.426 40.000 0.00 0.00 0.00 2.18
418 424 6.540438 AGTGTGATTCGATACCTTTCCTAA 57.460 37.500 0.00 0.00 0.00 2.69
419 425 6.153851 TCAAGTGTGATTCGATACCTTTCCTA 59.846 38.462 0.00 0.00 0.00 2.94
420 426 5.046591 TCAAGTGTGATTCGATACCTTTCCT 60.047 40.000 0.00 0.00 0.00 3.36
421 427 5.063564 GTCAAGTGTGATTCGATACCTTTCC 59.936 44.000 0.00 0.00 35.80 3.13
422 428 5.869888 AGTCAAGTGTGATTCGATACCTTTC 59.130 40.000 0.00 0.00 35.80 2.62
423 429 5.794894 AGTCAAGTGTGATTCGATACCTTT 58.205 37.500 0.00 0.00 35.80 3.11
424 430 5.407407 AGTCAAGTGTGATTCGATACCTT 57.593 39.130 0.00 0.00 35.80 3.50
425 431 5.407407 AAGTCAAGTGTGATTCGATACCT 57.593 39.130 0.00 0.00 35.80 3.08
426 432 4.265556 CGAAGTCAAGTGTGATTCGATACC 59.734 45.833 12.07 0.00 41.79 2.73
427 433 5.093457 TCGAAGTCAAGTGTGATTCGATAC 58.907 41.667 14.32 0.00 42.33 2.24
428 434 5.305139 TCGAAGTCAAGTGTGATTCGATA 57.695 39.130 14.32 2.11 42.33 2.92
429 435 4.174411 TCGAAGTCAAGTGTGATTCGAT 57.826 40.909 14.32 0.00 42.33 3.59
430 436 3.636282 TCGAAGTCAAGTGTGATTCGA 57.364 42.857 14.32 14.32 43.47 3.71
431 437 3.422343 GCTTCGAAGTCAAGTGTGATTCG 60.422 47.826 25.24 11.58 41.27 3.34
432 438 3.494626 TGCTTCGAAGTCAAGTGTGATTC 59.505 43.478 25.24 5.45 35.80 2.52
433 439 3.466836 TGCTTCGAAGTCAAGTGTGATT 58.533 40.909 25.24 0.00 35.80 2.57
434 440 3.111853 TGCTTCGAAGTCAAGTGTGAT 57.888 42.857 25.24 0.00 35.80 3.06
435 441 2.595124 TGCTTCGAAGTCAAGTGTGA 57.405 45.000 25.24 0.00 0.00 3.58
436 442 2.609459 AGTTGCTTCGAAGTCAAGTGTG 59.391 45.455 27.13 6.43 30.25 3.82
437 443 2.866762 GAGTTGCTTCGAAGTCAAGTGT 59.133 45.455 30.16 19.95 30.99 3.55
438 444 2.097202 CGAGTTGCTTCGAAGTCAAGTG 60.097 50.000 30.16 22.30 43.03 3.16
439 445 2.128035 CGAGTTGCTTCGAAGTCAAGT 58.872 47.619 27.63 27.63 43.03 3.16
440 446 2.394708 TCGAGTTGCTTCGAAGTCAAG 58.605 47.619 25.23 17.64 45.69 3.02
441 447 2.502213 TCGAGTTGCTTCGAAGTCAA 57.498 45.000 25.24 23.70 45.69 3.18
447 453 2.029739 TGTGGTATTCGAGTTGCTTCGA 60.030 45.455 4.78 4.78 46.86 3.71
448 454 2.333926 TGTGGTATTCGAGTTGCTTCG 58.666 47.619 0.00 0.40 41.79 3.79
449 455 3.746492 AGTTGTGGTATTCGAGTTGCTTC 59.254 43.478 0.00 0.00 0.00 3.86
450 456 3.740115 AGTTGTGGTATTCGAGTTGCTT 58.260 40.909 0.00 0.00 0.00 3.91
451 457 3.244078 TGAGTTGTGGTATTCGAGTTGCT 60.244 43.478 0.00 0.00 0.00 3.91
452 458 3.064207 TGAGTTGTGGTATTCGAGTTGC 58.936 45.455 0.00 0.00 0.00 4.17
453 459 5.666969 TTTGAGTTGTGGTATTCGAGTTG 57.333 39.130 0.00 0.00 0.00 3.16
454 460 5.587043 TGTTTTGAGTTGTGGTATTCGAGTT 59.413 36.000 0.00 0.00 0.00 3.01
455 461 5.120399 TGTTTTGAGTTGTGGTATTCGAGT 58.880 37.500 0.00 0.00 0.00 4.18
456 462 5.666969 TGTTTTGAGTTGTGGTATTCGAG 57.333 39.130 0.00 0.00 0.00 4.04
457 463 5.818336 TCTTGTTTTGAGTTGTGGTATTCGA 59.182 36.000 0.00 0.00 0.00 3.71
458 464 5.907391 GTCTTGTTTTGAGTTGTGGTATTCG 59.093 40.000 0.00 0.00 0.00 3.34
459 465 6.791303 TGTCTTGTTTTGAGTTGTGGTATTC 58.209 36.000 0.00 0.00 0.00 1.75
460 466 6.767524 TGTCTTGTTTTGAGTTGTGGTATT 57.232 33.333 0.00 0.00 0.00 1.89
461 467 6.767524 TTGTCTTGTTTTGAGTTGTGGTAT 57.232 33.333 0.00 0.00 0.00 2.73
462 468 6.349777 CCTTTGTCTTGTTTTGAGTTGTGGTA 60.350 38.462 0.00 0.00 0.00 3.25
463 469 5.461032 TTTGTCTTGTTTTGAGTTGTGGT 57.539 34.783 0.00 0.00 0.00 4.16
464 470 4.864247 CCTTTGTCTTGTTTTGAGTTGTGG 59.136 41.667 0.00 0.00 0.00 4.17
465 471 5.708948 TCCTTTGTCTTGTTTTGAGTTGTG 58.291 37.500 0.00 0.00 0.00 3.33
466 472 5.975693 TCCTTTGTCTTGTTTTGAGTTGT 57.024 34.783 0.00 0.00 0.00 3.32
467 473 6.256321 CCAATCCTTTGTCTTGTTTTGAGTTG 59.744 38.462 0.00 0.00 0.00 3.16
468 474 6.340522 CCAATCCTTTGTCTTGTTTTGAGTT 58.659 36.000 0.00 0.00 0.00 3.01
469 475 5.682212 GCCAATCCTTTGTCTTGTTTTGAGT 60.682 40.000 0.00 0.00 0.00 3.41
470 476 4.746611 GCCAATCCTTTGTCTTGTTTTGAG 59.253 41.667 0.00 0.00 0.00 3.02
471 477 4.405358 AGCCAATCCTTTGTCTTGTTTTGA 59.595 37.500 0.00 0.00 0.00 2.69
472 478 4.696455 AGCCAATCCTTTGTCTTGTTTTG 58.304 39.130 0.00 0.00 0.00 2.44
473 479 5.357742 AAGCCAATCCTTTGTCTTGTTTT 57.642 34.783 0.00 0.00 30.27 2.43
474 480 5.833131 TCTAAGCCAATCCTTTGTCTTGTTT 59.167 36.000 0.00 0.00 32.47 2.83
475 481 5.385198 TCTAAGCCAATCCTTTGTCTTGTT 58.615 37.500 0.00 0.00 32.47 2.83
476 482 4.985538 TCTAAGCCAATCCTTTGTCTTGT 58.014 39.130 0.00 0.00 32.47 3.16
477 483 5.964958 TTCTAAGCCAATCCTTTGTCTTG 57.035 39.130 0.00 0.00 32.47 3.02
478 484 6.976934 TTTTCTAAGCCAATCCTTTGTCTT 57.023 33.333 0.00 0.00 35.39 3.01
479 485 8.650143 TTATTTTCTAAGCCAATCCTTTGTCT 57.350 30.769 0.00 0.00 0.00 3.41
480 486 7.489435 GCTTATTTTCTAAGCCAATCCTTTGTC 59.511 37.037 5.82 0.00 42.88 3.18
481 487 7.323420 GCTTATTTTCTAAGCCAATCCTTTGT 58.677 34.615 5.82 0.00 42.88 2.83
482 488 7.761651 GCTTATTTTCTAAGCCAATCCTTTG 57.238 36.000 5.82 0.00 42.88 2.77
492 498 4.957759 TGTTCCGGCTTATTTTCTAAGC 57.042 40.909 0.00 8.17 46.64 3.09
493 499 6.674066 TGTTTGTTCCGGCTTATTTTCTAAG 58.326 36.000 0.00 0.00 0.00 2.18
494 500 6.636562 TGTTTGTTCCGGCTTATTTTCTAA 57.363 33.333 0.00 0.00 0.00 2.10
495 501 6.827586 ATGTTTGTTCCGGCTTATTTTCTA 57.172 33.333 0.00 0.00 0.00 2.10
496 502 5.722021 ATGTTTGTTCCGGCTTATTTTCT 57.278 34.783 0.00 0.00 0.00 2.52
497 503 7.254852 TCATATGTTTGTTCCGGCTTATTTTC 58.745 34.615 0.00 0.00 0.00 2.29
498 504 7.164230 TCATATGTTTGTTCCGGCTTATTTT 57.836 32.000 0.00 0.00 0.00 1.82
499 505 6.767524 TCATATGTTTGTTCCGGCTTATTT 57.232 33.333 0.00 0.00 0.00 1.40
500 506 6.959639 ATCATATGTTTGTTCCGGCTTATT 57.040 33.333 0.00 0.00 0.00 1.40
501 507 7.450074 TCTATCATATGTTTGTTCCGGCTTAT 58.550 34.615 0.00 0.00 0.00 1.73
502 508 6.822442 TCTATCATATGTTTGTTCCGGCTTA 58.178 36.000 0.00 0.00 0.00 3.09
503 509 5.680619 TCTATCATATGTTTGTTCCGGCTT 58.319 37.500 0.00 0.00 0.00 4.35
504 510 5.290493 TCTATCATATGTTTGTTCCGGCT 57.710 39.130 0.00 0.00 0.00 5.52
505 511 5.122396 GGATCTATCATATGTTTGTTCCGGC 59.878 44.000 0.00 0.00 0.00 6.13
506 512 5.643777 GGGATCTATCATATGTTTGTTCCGG 59.356 44.000 14.11 0.00 0.00 5.14
507 513 5.348724 CGGGATCTATCATATGTTTGTTCCG 59.651 44.000 14.11 11.49 0.00 4.30
508 514 6.231211 ACGGGATCTATCATATGTTTGTTCC 58.769 40.000 12.98 12.98 0.00 3.62
509 515 9.088512 GATACGGGATCTATCATATGTTTGTTC 57.911 37.037 1.90 0.95 0.00 3.18
510 516 7.759886 CGATACGGGATCTATCATATGTTTGTT 59.240 37.037 1.90 0.00 31.70 2.83
511 517 7.093902 ACGATACGGGATCTATCATATGTTTGT 60.094 37.037 1.90 0.00 31.70 2.83
512 518 7.258441 ACGATACGGGATCTATCATATGTTTG 58.742 38.462 1.90 0.00 31.70 2.93
513 519 7.406031 ACGATACGGGATCTATCATATGTTT 57.594 36.000 1.90 0.00 31.70 2.83
514 520 8.693120 ATACGATACGGGATCTATCATATGTT 57.307 34.615 1.90 0.00 31.70 2.71
515 521 7.937394 TGATACGATACGGGATCTATCATATGT 59.063 37.037 13.70 0.51 33.91 2.29
516 522 8.324163 TGATACGATACGGGATCTATCATATG 57.676 38.462 13.70 0.00 33.91 1.78
517 523 8.951243 CATGATACGATACGGGATCTATCATAT 58.049 37.037 21.68 9.93 39.81 1.78
518 524 7.937394 ACATGATACGATACGGGATCTATCATA 59.063 37.037 21.68 7.72 39.81 2.15
519 525 6.773200 ACATGATACGATACGGGATCTATCAT 59.227 38.462 19.08 19.08 40.89 2.45
520 526 6.038271 CACATGATACGATACGGGATCTATCA 59.962 42.308 17.27 17.27 38.11 2.15
521 527 6.038382 ACACATGATACGATACGGGATCTATC 59.962 42.308 0.00 5.87 31.72 2.08
522 528 5.886474 ACACATGATACGATACGGGATCTAT 59.114 40.000 0.00 0.00 31.70 1.98
523 529 5.250982 ACACATGATACGATACGGGATCTA 58.749 41.667 0.00 0.00 31.70 1.98
524 530 4.079970 ACACATGATACGATACGGGATCT 58.920 43.478 0.00 0.00 31.70 2.75
525 531 4.156190 AGACACATGATACGATACGGGATC 59.844 45.833 0.00 0.00 0.00 3.36
526 532 4.079970 AGACACATGATACGATACGGGAT 58.920 43.478 0.00 0.00 0.00 3.85
527 533 3.252458 CAGACACATGATACGATACGGGA 59.748 47.826 0.00 0.00 0.00 5.14
528 534 3.004419 ACAGACACATGATACGATACGGG 59.996 47.826 0.00 0.00 0.00 5.28
529 535 4.224715 ACAGACACATGATACGATACGG 57.775 45.455 0.00 0.00 0.00 4.02
530 536 4.441087 CCAACAGACACATGATACGATACG 59.559 45.833 0.00 0.00 0.00 3.06
531 537 5.588240 TCCAACAGACACATGATACGATAC 58.412 41.667 0.00 0.00 0.00 2.24
532 538 5.845391 TCCAACAGACACATGATACGATA 57.155 39.130 0.00 0.00 0.00 2.92
533 539 4.736126 TCCAACAGACACATGATACGAT 57.264 40.909 0.00 0.00 0.00 3.73
534 540 4.529109 TTCCAACAGACACATGATACGA 57.471 40.909 0.00 0.00 0.00 3.43
535 541 4.929211 TCTTTCCAACAGACACATGATACG 59.071 41.667 0.00 0.00 0.00 3.06
536 542 6.992063 ATCTTTCCAACAGACACATGATAC 57.008 37.500 0.00 0.00 0.00 2.24
537 543 9.112725 CAATATCTTTCCAACAGACACATGATA 57.887 33.333 0.00 0.00 0.00 2.15
538 544 7.067859 CCAATATCTTTCCAACAGACACATGAT 59.932 37.037 0.00 0.00 0.00 2.45
539 545 6.375174 CCAATATCTTTCCAACAGACACATGA 59.625 38.462 0.00 0.00 0.00 3.07
540 546 6.405065 CCCAATATCTTTCCAACAGACACATG 60.405 42.308 0.00 0.00 0.00 3.21
541 547 5.653769 CCCAATATCTTTCCAACAGACACAT 59.346 40.000 0.00 0.00 0.00 3.21
542 548 5.009631 CCCAATATCTTTCCAACAGACACA 58.990 41.667 0.00 0.00 0.00 3.72
543 549 5.010282 ACCCAATATCTTTCCAACAGACAC 58.990 41.667 0.00 0.00 0.00 3.67
544 550 5.255397 ACCCAATATCTTTCCAACAGACA 57.745 39.130 0.00 0.00 0.00 3.41
545 551 7.696992 TTAACCCAATATCTTTCCAACAGAC 57.303 36.000 0.00 0.00 0.00 3.51
546 552 8.893563 AATTAACCCAATATCTTTCCAACAGA 57.106 30.769 0.00 0.00 0.00 3.41
556 562 8.870116 GGCAAAAGGATAATTAACCCAATATCT 58.130 33.333 8.09 0.00 0.00 1.98
557 563 8.094548 GGGCAAAAGGATAATTAACCCAATATC 58.905 37.037 8.09 0.00 34.82 1.63
558 564 7.794196 AGGGCAAAAGGATAATTAACCCAATAT 59.206 33.333 8.09 0.00 37.28 1.28
559 565 7.136203 AGGGCAAAAGGATAATTAACCCAATA 58.864 34.615 8.09 0.00 37.28 1.90
619 625 3.061006 GGCAAAATTGAGCATAATTCGCG 60.061 43.478 0.00 0.00 33.01 5.87
627 633 3.026694 GACTAGGGGCAAAATTGAGCAT 58.973 45.455 0.00 0.00 0.00 3.79
634 640 0.679960 GCACGGACTAGGGGCAAAAT 60.680 55.000 0.00 0.00 0.00 1.82
698 704 2.092914 CCTCTAAGGGCCGAGTCAAAAT 60.093 50.000 0.00 0.00 0.00 1.82
735 741 5.121768 CGGTTTGAATAGAATTGACCGTCTT 59.878 40.000 0.00 0.00 42.46 3.01
742 748 5.457140 GTGCAACGGTTTGAATAGAATTGA 58.543 37.500 0.00 0.00 34.24 2.57
920 1026 0.748005 GCCGTGCTCTCTCTCTCTCT 60.748 60.000 0.00 0.00 0.00 3.10
994 1130 1.649664 CTTGAGGAAGACATGGAGCG 58.350 55.000 0.00 0.00 0.00 5.03
1069 1205 2.665000 CCGGCACCACAGACAGAT 59.335 61.111 0.00 0.00 0.00 2.90
1089 1225 2.333701 AAACCCTCCGAACAACGCCT 62.334 55.000 0.00 0.00 41.07 5.52
1176 1313 2.404693 CGACCACGAAAATGTTGCAATG 59.595 45.455 0.59 0.00 42.66 2.82
1183 1320 1.278127 AGATCCCGACCACGAAAATGT 59.722 47.619 0.00 0.00 42.66 2.71
1388 1525 3.897239 ACAGCTAGCTCTCTATCAGTGT 58.103 45.455 16.15 3.48 0.00 3.55
1411 1548 5.296283 CCTTCTTCTTCAACATCCTATGCTG 59.704 44.000 0.00 0.00 0.00 4.41
1415 1552 7.403231 TCCTAACCTTCTTCTTCAACATCCTAT 59.597 37.037 0.00 0.00 0.00 2.57
1506 1787 6.403333 TTCAACATTACAACTAGTGCGATC 57.597 37.500 0.00 0.00 0.00 3.69
1700 1994 5.066634 AGAGAGCTGCATTTCATTGATCAAG 59.933 40.000 14.54 6.44 0.00 3.02
1758 2056 1.762222 CTACGCTCCGAATTTGGCCG 61.762 60.000 17.80 17.80 0.00 6.13
1769 2067 1.811679 GCACTTGGCTCTACGCTCC 60.812 63.158 0.00 0.00 40.25 4.70
2029 2333 4.756135 GGCACATTTTCCATGACATTTTGT 59.244 37.500 0.00 0.00 0.00 2.83
2061 2365 2.302157 GCACCAGGTGTAAACCTCTACT 59.698 50.000 21.26 0.00 38.22 2.57
2234 2562 1.757118 CTTTCCATCTGTCCTAGCGGA 59.243 52.381 0.00 0.00 36.83 5.54
2372 2708 0.729140 GTGGCAGTGCAAACATACGC 60.729 55.000 18.61 0.00 0.00 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.