Multiple sequence alignment - TraesCS3A01G344100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G344100 chr3A 100.000 7899 0 0 1 7899 593358075 593350177 0.000000e+00 14587.0
1 TraesCS3A01G344100 chr3A 86.957 69 2 3 4573 4641 95018427 95018366 3.950000e-08 71.3
2 TraesCS3A01G344100 chr3B 94.011 3974 153 34 2368 6289 591459583 591455643 0.000000e+00 5941.0
3 TraesCS3A01G344100 chr3B 92.711 1468 79 17 756 2206 591461049 591459593 0.000000e+00 2093.0
4 TraesCS3A01G344100 chr3B 93.593 718 37 5 6478 7189 591455623 591454909 0.000000e+00 1062.0
5 TraesCS3A01G344100 chr3B 88.467 737 69 13 1 728 105588592 105587863 0.000000e+00 876.0
6 TraesCS3A01G344100 chr3B 86.688 631 43 11 7298 7898 591454804 591454185 0.000000e+00 662.0
7 TraesCS3A01G344100 chr3D 93.848 2292 85 18 3744 6012 449752020 449749762 0.000000e+00 3400.0
8 TraesCS3A01G344100 chr3D 94.932 1401 47 9 2361 3742 449753503 449752108 0.000000e+00 2172.0
9 TraesCS3A01G344100 chr3D 92.673 1433 76 15 791 2203 449754932 449753509 0.000000e+00 2037.0
10 TraesCS3A01G344100 chr3D 91.511 801 53 11 6470 7259 449749554 449748758 0.000000e+00 1088.0
11 TraesCS3A01G344100 chr3D 89.247 744 64 12 1 735 578928502 578929238 0.000000e+00 917.0
12 TraesCS3A01G344100 chr3D 88.740 373 19 10 7298 7650 449748757 449748388 1.220000e-117 435.0
13 TraesCS3A01G344100 chr3D 93.956 182 10 1 6285 6466 547456492 547456312 2.810000e-69 274.0
14 TraesCS3A01G344100 chr3D 98.052 154 2 1 2208 2360 26165848 26165695 4.700000e-67 267.0
15 TraesCS3A01G344100 chr3D 95.035 141 7 0 6149 6289 449749707 449749567 1.030000e-53 222.0
16 TraesCS3A01G344100 chr3D 100.000 39 0 0 6107 6145 449749770 449749732 1.100000e-08 73.1
17 TraesCS3A01G344100 chr7D 89.843 699 61 7 31 723 417354244 417353550 0.000000e+00 889.0
18 TraesCS3A01G344100 chr7D 96.815 157 3 2 2209 2364 617790744 617790589 2.190000e-65 261.0
19 TraesCS3A01G344100 chr2B 88.723 736 72 7 1 729 543164496 543163765 0.000000e+00 889.0
20 TraesCS3A01G344100 chr5D 90.390 666 57 6 1 660 556516981 556516317 0.000000e+00 869.0
21 TraesCS3A01G344100 chr5D 96.129 155 5 1 2207 2360 257502134 257502288 1.320000e-62 252.0
22 TraesCS3A01G344100 chr7B 88.033 727 76 7 1 721 138485584 138486305 0.000000e+00 850.0
23 TraesCS3A01G344100 chr7B 85.757 674 77 13 1 667 116482046 116481385 0.000000e+00 695.0
24 TraesCS3A01G344100 chrUn 87.433 748 71 17 4 736 176320952 176321691 0.000000e+00 839.0
25 TraesCS3A01G344100 chr6B 88.551 690 67 8 3 685 426834410 426835094 0.000000e+00 826.0
26 TraesCS3A01G344100 chr6B 95.082 183 7 2 6287 6468 683318631 683318812 3.610000e-73 287.0
27 TraesCS3A01G344100 chr2A 79.091 440 73 13 6489 6914 69304251 69304685 1.300000e-72 285.0
28 TraesCS3A01G344100 chr2A 93.889 180 7 3 6290 6467 218122425 218122248 1.310000e-67 268.0
29 TraesCS3A01G344100 chr4D 95.349 172 7 1 6295 6466 44750817 44750647 1.010000e-68 272.0
30 TraesCS3A01G344100 chr4D 85.714 70 9 1 4572 4641 346380775 346380707 1.100000e-08 73.1
31 TraesCS3A01G344100 chr6D 93.443 183 9 2 6285 6466 390481417 390481237 1.310000e-67 268.0
32 TraesCS3A01G344100 chr6D 93.443 183 8 3 6285 6466 390489584 390489405 1.310000e-67 268.0
33 TraesCS3A01G344100 chr6D 96.753 154 4 1 2209 2361 450831965 450832118 1.020000e-63 255.0
34 TraesCS3A01G344100 chr7A 93.407 182 8 3 6287 6466 115736438 115736259 4.700000e-67 267.0
35 TraesCS3A01G344100 chr7A 96.078 153 5 1 2209 2360 428822173 428822325 1.700000e-61 248.0
36 TraesCS3A01G344100 chr7A 100.000 35 0 0 4607 4641 622369535 622369569 1.840000e-06 65.8
37 TraesCS3A01G344100 chr1D 98.052 154 2 1 2208 2360 418199431 418199584 4.700000e-67 267.0
38 TraesCS3A01G344100 chr1D 92.188 64 3 2 4572 4635 202555743 202555682 1.090000e-13 89.8
39 TraesCS3A01G344100 chr2D 98.039 153 2 1 2209 2360 215831815 215831967 1.690000e-66 265.0
40 TraesCS3A01G344100 chr6A 91.979 187 13 2 6286 6472 467048182 467048366 2.190000e-65 261.0
41 TraesCS3A01G344100 chr5B 91.237 194 12 4 6285 6476 275235270 275235460 7.860000e-65 259.0
42 TraesCS3A01G344100 chr5B 97.386 153 3 1 2209 2360 291786854 291787006 7.860000e-65 259.0
43 TraesCS3A01G344100 chr5B 94.203 69 3 1 4573 4641 163260731 163260664 3.900000e-18 104.0
44 TraesCS3A01G344100 chr1A 96.129 155 5 1 2208 2361 99618362 99618516 1.320000e-62 252.0
45 TraesCS3A01G344100 chr1A 88.889 72 7 1 4570 4641 256814070 256814000 3.930000e-13 87.9
46 TraesCS3A01G344100 chr4B 89.855 69 6 1 4573 4641 369047636 369047703 3.930000e-13 87.9
47 TraesCS3A01G344100 chr4A 82.857 70 11 1 4572 4641 449400962 449400894 2.380000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G344100 chr3A 593350177 593358075 7898 True 14587.000000 14587 100.000000 1 7899 1 chr3A.!!$R2 7898
1 TraesCS3A01G344100 chr3B 591454185 591461049 6864 True 2439.500000 5941 91.750750 756 7898 4 chr3B.!!$R2 7142
2 TraesCS3A01G344100 chr3B 105587863 105588592 729 True 876.000000 876 88.467000 1 728 1 chr3B.!!$R1 727
3 TraesCS3A01G344100 chr3D 449748388 449754932 6544 True 1346.728571 3400 93.819857 791 7650 7 chr3D.!!$R3 6859
4 TraesCS3A01G344100 chr3D 578928502 578929238 736 False 917.000000 917 89.247000 1 735 1 chr3D.!!$F1 734
5 TraesCS3A01G344100 chr7D 417353550 417354244 694 True 889.000000 889 89.843000 31 723 1 chr7D.!!$R1 692
6 TraesCS3A01G344100 chr2B 543163765 543164496 731 True 889.000000 889 88.723000 1 729 1 chr2B.!!$R1 728
7 TraesCS3A01G344100 chr5D 556516317 556516981 664 True 869.000000 869 90.390000 1 660 1 chr5D.!!$R1 659
8 TraesCS3A01G344100 chr7B 138485584 138486305 721 False 850.000000 850 88.033000 1 721 1 chr7B.!!$F1 720
9 TraesCS3A01G344100 chr7B 116481385 116482046 661 True 695.000000 695 85.757000 1 667 1 chr7B.!!$R1 666
10 TraesCS3A01G344100 chrUn 176320952 176321691 739 False 839.000000 839 87.433000 4 736 1 chrUn.!!$F1 732
11 TraesCS3A01G344100 chr6B 426834410 426835094 684 False 826.000000 826 88.551000 3 685 1 chr6B.!!$F1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 775 0.110056 GCATTCACGTCCAGCTGTTG 60.110 55.000 13.81 4.20 0.00 3.33 F
756 776 0.110056 CATTCACGTCCAGCTGTTGC 60.110 55.000 13.81 1.08 40.05 4.17 F
2243 2286 0.248949 GTAAGGCGACCTAAGGCGAG 60.249 60.000 4.41 0.00 39.33 5.03 F
2309 2352 0.028110 GCATAGTTGTAAGGCGCTGC 59.972 55.000 7.64 0.37 0.00 5.25 F
2343 2386 1.450312 CCTAAGCGTCCAAGGCAGG 60.450 63.158 0.00 0.00 0.00 4.85 F
2344 2387 1.596934 CTAAGCGTCCAAGGCAGGA 59.403 57.895 0.00 0.00 34.64 3.86 F
3351 3414 2.032030 CCAGCACACTTCCGTAAAACTG 60.032 50.000 0.00 0.00 0.00 3.16 F
4386 4545 0.905357 TGGAAGGAGAGCAGGTTAGC 59.095 55.000 0.00 0.00 0.00 3.09 F
4917 5084 0.664466 GAGAAAACTGCCGGCAAAGC 60.664 55.000 32.09 17.44 0.00 3.51 F
6298 6495 0.538584 CTGCATCTGTCTAGGGCACA 59.461 55.000 0.00 0.00 33.30 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 2333 0.028110 GCAGCGCCTTACAACTATGC 59.972 55.000 2.29 0.0 0.00 3.14 R
2291 2334 0.657840 GGCAGCGCCTTACAACTATG 59.342 55.000 2.29 0.0 46.69 2.23 R
3090 3150 1.071699 GTACAGCCCACAGGAACAAGA 59.928 52.381 0.00 0.0 33.47 3.02 R
4030 4188 2.328099 CCGCAACCTTCTGTCCTGC 61.328 63.158 0.00 0.0 0.00 4.85 R
4299 4458 2.781681 AGTATGACCGGTCTTTTGGG 57.218 50.000 33.39 0.0 0.00 4.12 R
4367 4526 0.905357 GCTAACCTGCTCTCCTTCCA 59.095 55.000 0.00 0.0 0.00 3.53 R
4917 5084 0.677098 ATCTGCAGCTGCCTCTGTTG 60.677 55.000 34.64 15.6 41.18 3.33 R
6237 6434 2.753452 CTGCAAGGAGACAATTGAGCAT 59.247 45.455 13.59 0.0 0.00 3.79 R
6613 6810 1.203162 TGGCCAACCTTTGATCACCAT 60.203 47.619 0.61 0.0 36.63 3.55 R
7404 7649 0.538287 GCAGGTCAGGCAAAAGGAGT 60.538 55.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 8.856490 AATGAAAAATTCGATTAAAGATCCGG 57.144 30.769 0.00 0.00 0.00 5.14
197 201 6.490721 TGCCATATCTATTGCACATGAATTGA 59.509 34.615 0.00 0.00 30.49 2.57
352 358 8.522003 TGTCATGATACATGCACTTAAAATTGT 58.478 29.630 0.00 0.00 0.00 2.71
486 501 4.771577 TGTAAACATCATGACTTGGGCAAT 59.228 37.500 0.00 0.00 0.00 3.56
521 539 3.315191 CGAAACATATCAACATGGGGTCC 59.685 47.826 0.00 0.00 0.00 4.46
540 558 4.307432 GTCCAGTTTTGAAGATCTCGTCA 58.693 43.478 0.00 0.00 32.73 4.35
675 695 3.256631 GCAAAATGAGTGGTGATGAAGGT 59.743 43.478 0.00 0.00 0.00 3.50
690 710 2.281484 GGTGTGTGGGCGATGTGT 60.281 61.111 0.00 0.00 0.00 3.72
696 716 2.498078 TGTGTGGGCGATGTGTAAGATA 59.502 45.455 0.00 0.00 0.00 1.98
747 767 5.966636 AAAAAGAAAAAGCATTCACGTCC 57.033 34.783 0.00 0.00 0.00 4.79
748 768 4.647424 AAAGAAAAAGCATTCACGTCCA 57.353 36.364 0.00 0.00 0.00 4.02
749 769 3.904136 AGAAAAAGCATTCACGTCCAG 57.096 42.857 0.00 0.00 0.00 3.86
750 770 2.030805 AGAAAAAGCATTCACGTCCAGC 60.031 45.455 0.00 0.00 0.00 4.85
751 771 1.609208 AAAAGCATTCACGTCCAGCT 58.391 45.000 0.00 0.00 37.08 4.24
752 772 0.877071 AAAGCATTCACGTCCAGCTG 59.123 50.000 6.78 6.78 35.42 4.24
753 773 0.250467 AAGCATTCACGTCCAGCTGT 60.250 50.000 13.81 0.00 35.42 4.40
754 774 0.250467 AGCATTCACGTCCAGCTGTT 60.250 50.000 13.81 0.00 33.67 3.16
755 775 0.110056 GCATTCACGTCCAGCTGTTG 60.110 55.000 13.81 4.20 0.00 3.33
756 776 0.110056 CATTCACGTCCAGCTGTTGC 60.110 55.000 13.81 1.08 40.05 4.17
768 788 2.268730 GCTGTTGCTTTGCTATCCAC 57.731 50.000 0.00 0.00 36.03 4.02
769 789 1.541147 GCTGTTGCTTTGCTATCCACA 59.459 47.619 0.00 0.00 36.03 4.17
770 790 2.669391 GCTGTTGCTTTGCTATCCACAC 60.669 50.000 0.00 0.00 36.03 3.82
771 791 1.885887 TGTTGCTTTGCTATCCACACC 59.114 47.619 0.00 0.00 0.00 4.16
772 792 1.135689 GTTGCTTTGCTATCCACACCG 60.136 52.381 0.00 0.00 0.00 4.94
773 793 1.305219 TGCTTTGCTATCCACACCGC 61.305 55.000 0.00 0.00 0.00 5.68
774 794 1.026718 GCTTTGCTATCCACACCGCT 61.027 55.000 0.00 0.00 0.00 5.52
775 795 1.009829 CTTTGCTATCCACACCGCTC 58.990 55.000 0.00 0.00 0.00 5.03
776 796 0.739462 TTTGCTATCCACACCGCTCG 60.739 55.000 0.00 0.00 0.00 5.03
777 797 2.279517 GCTATCCACACCGCTCGG 60.280 66.667 6.79 6.79 42.03 4.63
851 871 3.335748 TGGTAAGGCCCATGAGGATATT 58.664 45.455 0.00 0.00 38.24 1.28
853 873 3.589288 GGTAAGGCCCATGAGGATATTCT 59.411 47.826 0.00 0.00 38.24 2.40
867 887 7.529555 TGAGGATATTCTGAGCCCATAAAAAT 58.470 34.615 0.00 0.00 0.00 1.82
873 893 5.499139 TCTGAGCCCATAAAAATAAAGCG 57.501 39.130 0.00 0.00 0.00 4.68
878 898 3.796717 GCCCATAAAAATAAAGCGTCAGC 59.203 43.478 0.00 0.00 45.58 4.26
891 911 1.001378 GCGTCAGCACAGTCCAAATTT 60.001 47.619 0.00 0.00 44.35 1.82
908 946 8.590204 GTCCAAATTTAACATAGGAAAAAGGGA 58.410 33.333 0.00 0.00 0.00 4.20
965 1003 3.631087 CCTCTTCTCCACTTCCCCTATCA 60.631 52.174 0.00 0.00 0.00 2.15
974 1012 3.264450 CACTTCCCCTATCACTCCTTTGT 59.736 47.826 0.00 0.00 0.00 2.83
975 1013 3.519913 ACTTCCCCTATCACTCCTTTGTC 59.480 47.826 0.00 0.00 0.00 3.18
981 1019 1.348064 ATCACTCCTTTGTCCGTGGA 58.652 50.000 0.00 0.00 0.00 4.02
1003 1041 2.029838 AAAGCTCGACCTGCTAATGG 57.970 50.000 0.00 0.00 40.22 3.16
1004 1042 0.462759 AAGCTCGACCTGCTAATGGC 60.463 55.000 0.00 0.00 40.22 4.40
1083 1121 0.903454 ACCTGAACCTCGATCCGGTT 60.903 55.000 12.53 12.53 46.91 4.44
1094 1132 1.073706 ATCCGGTTAGCCCCTCCAT 60.074 57.895 0.00 0.00 0.00 3.41
1095 1133 0.697854 ATCCGGTTAGCCCCTCCATT 60.698 55.000 0.00 0.00 0.00 3.16
1210 1249 4.098416 GCGTGATTTTCATTCTTACAGGC 58.902 43.478 0.00 0.00 0.00 4.85
1214 1253 1.083489 TTTCATTCTTACAGGCGCGG 58.917 50.000 8.83 0.00 0.00 6.46
1253 1292 0.846427 AGATTTGTGGGGCTCTGGGA 60.846 55.000 0.00 0.00 0.00 4.37
1293 1332 9.939047 CGATAATTAAGTTTGCATAGTATCGTC 57.061 33.333 0.00 0.00 0.00 4.20
1338 1377 1.732405 GCTGCGTTGTGGAATTTAGGC 60.732 52.381 0.00 0.00 0.00 3.93
1494 1533 4.002982 TGCTATCGAGATTGTTTTGCTGT 58.997 39.130 0.00 0.00 0.00 4.40
1495 1534 4.142838 TGCTATCGAGATTGTTTTGCTGTG 60.143 41.667 0.00 0.00 0.00 3.66
1496 1535 2.686558 TCGAGATTGTTTTGCTGTGC 57.313 45.000 0.00 0.00 0.00 4.57
1514 1553 5.226360 GCTGTGCAAAAATAATACGTTACGG 59.774 40.000 10.20 0.00 0.00 4.02
1651 1690 9.092876 GTTAATATGCAAGAGCTATAGACATCC 57.907 37.037 3.21 0.00 42.74 3.51
1667 1706 4.572389 AGACATCCAACATACATCTTTCGC 59.428 41.667 0.00 0.00 0.00 4.70
1712 1751 3.760537 CTGCGTACTTCTCTCTGGTTAC 58.239 50.000 0.00 0.00 0.00 2.50
1812 1851 4.619973 TGTTTGATTGCCAAGAATGTGAC 58.380 39.130 0.00 0.00 35.94 3.67
1921 1962 4.443394 GCAAAGATGAAGCTTGAAACACTG 59.557 41.667 2.10 0.00 0.00 3.66
1991 2032 0.554792 AGCATATGCCCTTGCTCCTT 59.445 50.000 23.96 0.00 45.83 3.36
2127 2170 9.535878 CTAATTGAGTAACTTAGGGATGACTTC 57.464 37.037 0.00 0.00 0.00 3.01
2203 2246 5.333299 ACTTTGATGCGTACTATGTACCA 57.667 39.130 2.76 2.94 0.00 3.25
2206 2249 5.523438 TTGATGCGTACTATGTACCATGA 57.477 39.130 12.81 5.88 0.00 3.07
2208 2251 5.709966 TGATGCGTACTATGTACCATGATC 58.290 41.667 12.81 0.00 0.00 2.92
2209 2252 5.242838 TGATGCGTACTATGTACCATGATCA 59.757 40.000 0.00 0.00 0.00 2.92
2210 2253 5.722021 TGCGTACTATGTACCATGATCAT 57.278 39.130 1.18 1.18 0.00 2.45
2211 2254 6.096673 TGCGTACTATGTACCATGATCATT 57.903 37.500 5.16 0.00 0.00 2.57
2212 2255 5.925969 TGCGTACTATGTACCATGATCATTG 59.074 40.000 5.16 5.22 0.00 2.82
2213 2256 5.926542 GCGTACTATGTACCATGATCATTGT 59.073 40.000 15.96 15.96 33.74 2.71
2214 2257 6.423905 GCGTACTATGTACCATGATCATTGTT 59.576 38.462 16.79 3.20 32.22 2.83
2215 2258 7.042051 GCGTACTATGTACCATGATCATTGTTT 60.042 37.037 16.79 6.39 32.22 2.83
2216 2259 8.826710 CGTACTATGTACCATGATCATTGTTTT 58.173 33.333 16.79 6.09 32.22 2.43
2222 2265 7.319646 TGTACCATGATCATTGTTTTTAAGGC 58.680 34.615 16.79 0.00 0.00 4.35
2223 2266 5.410067 ACCATGATCATTGTTTTTAAGGCG 58.590 37.500 5.16 0.00 0.00 5.52
2224 2267 4.805192 CCATGATCATTGTTTTTAAGGCGG 59.195 41.667 5.16 0.00 0.00 6.13
2225 2268 5.410067 CATGATCATTGTTTTTAAGGCGGT 58.590 37.500 5.16 0.00 0.00 5.68
2226 2269 6.405286 CCATGATCATTGTTTTTAAGGCGGTA 60.405 38.462 5.16 0.00 0.00 4.02
2227 2270 6.576662 TGATCATTGTTTTTAAGGCGGTAA 57.423 33.333 0.00 0.00 0.00 2.85
2228 2271 6.616947 TGATCATTGTTTTTAAGGCGGTAAG 58.383 36.000 0.00 0.00 0.00 2.34
2229 2272 5.379732 TCATTGTTTTTAAGGCGGTAAGG 57.620 39.130 0.00 0.00 0.00 2.69
2237 2280 2.894919 GGCGGTAAGGCGACCTAA 59.105 61.111 9.52 0.00 37.34 2.69
2238 2281 1.227176 GGCGGTAAGGCGACCTAAG 60.227 63.158 9.52 0.00 37.34 2.18
2239 2282 1.227176 GCGGTAAGGCGACCTAAGG 60.227 63.158 9.52 0.00 37.34 2.69
2240 2283 1.227176 CGGTAAGGCGACCTAAGGC 60.227 63.158 9.52 0.00 37.34 4.35
2241 2284 1.227176 GGTAAGGCGACCTAAGGCG 60.227 63.158 4.54 0.00 39.33 5.52
2242 2285 1.669999 GGTAAGGCGACCTAAGGCGA 61.670 60.000 4.41 0.00 39.33 5.54
2243 2286 0.248949 GTAAGGCGACCTAAGGCGAG 60.249 60.000 4.41 0.00 39.33 5.03
2244 2287 2.012902 TAAGGCGACCTAAGGCGAGC 62.013 60.000 4.41 0.00 39.33 5.03
2245 2288 4.143333 GGCGACCTAAGGCGAGCA 62.143 66.667 4.41 0.00 0.00 4.26
2246 2289 2.886124 GCGACCTAAGGCGAGCAC 60.886 66.667 4.41 0.00 0.00 4.40
2247 2290 2.202756 CGACCTAAGGCGAGCACC 60.203 66.667 0.00 0.00 0.00 5.01
2248 2291 2.978824 GACCTAAGGCGAGCACCA 59.021 61.111 0.00 0.00 0.00 4.17
2249 2292 1.448013 GACCTAAGGCGAGCACCAC 60.448 63.158 0.00 0.00 0.00 4.16
2250 2293 2.125106 CCTAAGGCGAGCACCACC 60.125 66.667 0.00 0.00 0.00 4.61
2251 2294 2.125106 CTAAGGCGAGCACCACCC 60.125 66.667 0.00 0.00 0.00 4.61
2252 2295 4.077184 TAAGGCGAGCACCACCCG 62.077 66.667 0.00 0.00 0.00 5.28
2259 2302 3.775654 AGCACCACCCGCTCTAGC 61.776 66.667 0.00 0.00 33.35 3.42
2298 2341 3.006672 CCTAAGGCGGGCATAGTTG 57.993 57.895 12.01 0.00 0.00 3.16
2299 2342 0.180406 CCTAAGGCGGGCATAGTTGT 59.820 55.000 12.01 0.00 0.00 3.32
2300 2343 1.414919 CCTAAGGCGGGCATAGTTGTA 59.585 52.381 12.01 0.00 0.00 2.41
2301 2344 2.158871 CCTAAGGCGGGCATAGTTGTAA 60.159 50.000 12.01 0.00 0.00 2.41
2302 2345 2.038387 AAGGCGGGCATAGTTGTAAG 57.962 50.000 3.78 0.00 0.00 2.34
2303 2346 0.180406 AGGCGGGCATAGTTGTAAGG 59.820 55.000 3.78 0.00 0.00 2.69
2304 2347 1.444917 GGCGGGCATAGTTGTAAGGC 61.445 60.000 0.00 0.00 0.00 4.35
2305 2348 1.772063 GCGGGCATAGTTGTAAGGCG 61.772 60.000 0.00 0.00 0.00 5.52
2306 2349 1.772063 CGGGCATAGTTGTAAGGCGC 61.772 60.000 0.00 0.00 0.00 6.53
2307 2350 0.463833 GGGCATAGTTGTAAGGCGCT 60.464 55.000 7.64 0.00 34.95 5.92
2308 2351 0.657840 GGCATAGTTGTAAGGCGCTG 59.342 55.000 7.64 0.00 0.00 5.18
2309 2352 0.028110 GCATAGTTGTAAGGCGCTGC 59.972 55.000 7.64 0.37 0.00 5.25
2342 2385 4.208632 CCTAAGCGTCCAAGGCAG 57.791 61.111 0.00 0.00 0.00 4.85
2343 2386 1.450312 CCTAAGCGTCCAAGGCAGG 60.450 63.158 0.00 0.00 0.00 4.85
2344 2387 1.596934 CTAAGCGTCCAAGGCAGGA 59.403 57.895 0.00 0.00 34.64 3.86
2359 2402 2.595386 GCAGGACGCCTTAAAACAATG 58.405 47.619 0.00 0.00 32.94 2.82
2366 2409 2.324860 GCCTTAAAACAATGACCGTGC 58.675 47.619 0.00 0.00 0.00 5.34
2414 2457 3.976169 TGAACAAATTTTGCCCTTCTCG 58.024 40.909 9.04 0.00 0.00 4.04
2509 2552 7.212976 ACAGAATAGCATATCCAGTACACTTG 58.787 38.462 0.00 0.00 0.00 3.16
2700 2743 6.739112 AGTTCTCCAGCAATTTTGTTCTAAC 58.261 36.000 0.00 0.00 0.00 2.34
2866 2909 5.182380 ACTTTACCCATTTACATGAACACCG 59.818 40.000 0.00 0.00 31.07 4.94
3061 3111 7.234166 ACATTCAGGTTTGAGATGGATCTTTTT 59.766 33.333 0.00 0.00 37.25 1.94
3234 3297 4.508551 TCAGTCACTATGCCCATTCAAT 57.491 40.909 0.00 0.00 0.00 2.57
3251 3314 9.826574 CCCATTCAATGATGTCATTTTAATCTT 57.173 29.630 0.00 0.00 43.48 2.40
3351 3414 2.032030 CCAGCACACTTCCGTAAAACTG 60.032 50.000 0.00 0.00 0.00 3.16
3426 3489 8.197439 GCTGGGCAGTTATTTTAGTATCATTTT 58.803 33.333 0.00 0.00 0.00 1.82
3568 3638 5.982516 TGCAGAATGTTGTTGATTTTGGTAC 59.017 36.000 0.00 0.00 39.31 3.34
3571 3641 7.083858 CAGAATGTTGTTGATTTTGGTACGAT 58.916 34.615 0.00 0.00 0.00 3.73
3809 3966 9.556030 GCTTGTTTACATTTGTAGAATCTAACC 57.444 33.333 0.00 0.00 0.00 2.85
3853 4010 9.480053 AGTACTACTAAAGTGCGAAAACATTAA 57.520 29.630 0.00 0.00 44.80 1.40
4030 4188 4.696455 ACCAAATTCCAAGAAAGCTGTTG 58.304 39.130 0.00 0.00 0.00 3.33
4268 4427 9.737844 TTTGGTTGATGCTATTGCTATATCATA 57.262 29.630 4.79 0.00 40.48 2.15
4269 4428 8.953368 TGGTTGATGCTATTGCTATATCATAG 57.047 34.615 4.79 0.00 40.48 2.23
4270 4429 7.989170 TGGTTGATGCTATTGCTATATCATAGG 59.011 37.037 4.79 0.00 40.48 2.57
4376 4535 6.514012 TGGCAAGATATTAATGGAAGGAGA 57.486 37.500 0.00 0.00 0.00 3.71
4386 4545 0.905357 TGGAAGGAGAGCAGGTTAGC 59.095 55.000 0.00 0.00 0.00 3.09
4452 4611 4.828939 CCAGAATATCATAGGCTGCCAAAA 59.171 41.667 22.65 6.13 0.00 2.44
4495 4654 4.282449 GGCACCAAACTAAACATACCCTTT 59.718 41.667 0.00 0.00 0.00 3.11
4601 4760 5.509163 CCTCCGATCCATTAATAAGTGTCGT 60.509 44.000 0.00 0.00 0.00 4.34
4658 4824 4.401837 ACTTATCGGAGGGAGTACAACTTC 59.598 45.833 0.00 0.00 0.00 3.01
4693 4859 7.360776 GGTGTTGATTTTCATGTTGTTGTTGTT 60.361 33.333 0.00 0.00 0.00 2.83
4694 4860 7.478044 GTGTTGATTTTCATGTTGTTGTTGTTG 59.522 33.333 0.00 0.00 0.00 3.33
4695 4861 7.172190 TGTTGATTTTCATGTTGTTGTTGTTGT 59.828 29.630 0.00 0.00 0.00 3.32
4696 4862 7.664082 TGATTTTCATGTTGTTGTTGTTGTT 57.336 28.000 0.00 0.00 0.00 2.83
4697 4863 7.516481 TGATTTTCATGTTGTTGTTGTTGTTG 58.484 30.769 0.00 0.00 0.00 3.33
4698 4864 6.851222 TTTTCATGTTGTTGTTGTTGTTGT 57.149 29.167 0.00 0.00 0.00 3.32
4699 4865 6.851222 TTTCATGTTGTTGTTGTTGTTGTT 57.149 29.167 0.00 0.00 0.00 2.83
4700 4866 5.835911 TCATGTTGTTGTTGTTGTTGTTG 57.164 34.783 0.00 0.00 0.00 3.33
4701 4867 5.292765 TCATGTTGTTGTTGTTGTTGTTGT 58.707 33.333 0.00 0.00 0.00 3.32
4702 4868 5.755375 TCATGTTGTTGTTGTTGTTGTTGTT 59.245 32.000 0.00 0.00 0.00 2.83
4703 4869 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4704 4870 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4705 4871 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4706 4872 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4707 4873 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4744 4911 9.469807 GTTGATTTTCATGTTTGTACACCATTA 57.530 29.630 0.00 0.00 37.03 1.90
4903 5070 7.232737 GGGGATAAAAAGAAAGTCCAAGAGAAA 59.767 37.037 0.00 0.00 0.00 2.52
4915 5082 1.066908 CAAGAGAAAACTGCCGGCAAA 59.933 47.619 32.09 8.76 0.00 3.68
4916 5083 0.954452 AGAGAAAACTGCCGGCAAAG 59.046 50.000 32.09 22.42 0.00 2.77
4917 5084 0.664466 GAGAAAACTGCCGGCAAAGC 60.664 55.000 32.09 17.44 0.00 3.51
4936 5106 0.677098 CAACAGAGGCAGCTGCAGAT 60.677 55.000 37.63 23.85 44.36 2.90
5026 5196 3.100817 CGTTATTCGCAAAGCATGGAAG 58.899 45.455 0.00 0.00 0.00 3.46
5169 5343 4.524802 AGATTTGGGAGATGGCAATGTA 57.475 40.909 0.00 0.00 0.00 2.29
5299 5473 9.154847 TCTTATACATGATTCTGTGTTCTGTTG 57.845 33.333 0.00 0.00 0.00 3.33
5315 5489 7.116233 GTGTTCTGTTGTAAATATTTGCCCTTG 59.884 37.037 11.05 1.50 0.00 3.61
5408 5582 1.331756 GGATTGGTATGCTCTGTTGCG 59.668 52.381 0.00 0.00 35.36 4.85
5464 5638 9.206870 CAAAGCTTCTTGAATTTTGGCTATTAA 57.793 29.630 0.00 0.00 0.00 1.40
5505 5679 5.048294 CCCCAAAATACTACTGTGGTGAAAC 60.048 44.000 7.09 0.00 0.00 2.78
5585 5761 9.953565 ATTACTAGACCTCATACTGATAGACTC 57.046 37.037 0.00 0.00 0.00 3.36
5586 5762 7.626999 ACTAGACCTCATACTGATAGACTCT 57.373 40.000 0.00 0.00 0.00 3.24
5735 5913 5.068460 CCCTTACCATTGTGTTTGTCTTTGA 59.932 40.000 0.00 0.00 0.00 2.69
5972 6166 3.923648 AGGGGTCCCATTTTATAAAGGC 58.076 45.455 10.98 0.00 38.92 4.35
6023 6217 9.715121 TTTACTATGTTCGGTTTTCTTATCTGT 57.285 29.630 0.00 0.00 0.00 3.41
6026 6220 9.530633 ACTATGTTCGGTTTTCTTATCTGTATC 57.469 33.333 0.00 0.00 0.00 2.24
6039 6233 8.214721 TCTTATCTGTATCCATAGCTATGACG 57.785 38.462 31.14 17.43 35.75 4.35
6044 6238 7.339482 TCTGTATCCATAGCTATGACGTATCT 58.661 38.462 31.14 11.84 35.75 1.98
6074 6268 4.576463 CCATTTAGTATGCAGTTCTGGACC 59.424 45.833 0.00 0.00 0.00 4.46
6121 6315 6.071896 TGTTGCAAAATATGTTGGTCCGAATA 60.072 34.615 0.00 0.00 0.00 1.75
6122 6316 6.516739 TGCAAAATATGTTGGTCCGAATAA 57.483 33.333 7.74 0.00 0.00 1.40
6123 6317 6.326375 TGCAAAATATGTTGGTCCGAATAAC 58.674 36.000 7.74 0.00 0.00 1.89
6125 6319 6.809196 GCAAAATATGTTGGTCCGAATAACAA 59.191 34.615 7.74 0.00 37.78 2.83
6126 6320 7.491048 GCAAAATATGTTGGTCCGAATAACAAT 59.509 33.333 7.74 0.00 37.78 2.71
6141 6335 8.633075 CGAATAACAATATTTGGAAGTGCAAT 57.367 30.769 0.00 0.00 31.83 3.56
6142 6336 9.086336 CGAATAACAATATTTGGAAGTGCAATT 57.914 29.630 0.00 0.00 31.83 2.32
6145 6339 9.941325 ATAACAATATTTGGAAGTGCAATTTGA 57.059 25.926 0.00 0.00 34.12 2.69
6146 6340 8.851541 AACAATATTTGGAAGTGCAATTTGAT 57.148 26.923 0.00 0.00 34.12 2.57
6147 6341 9.941325 AACAATATTTGGAAGTGCAATTTGATA 57.059 25.926 0.00 0.00 34.12 2.15
6156 6353 7.831690 TGGAAGTGCAATTTGATATGTTAGGTA 59.168 33.333 0.00 0.00 0.00 3.08
6159 6356 8.807948 AGTGCAATTTGATATGTTAGGTAGTT 57.192 30.769 0.00 0.00 0.00 2.24
6289 6486 5.238214 GGTTCCTATTTGATCTGCATCTGTC 59.762 44.000 0.00 0.00 0.00 3.51
6290 6487 5.883685 TCCTATTTGATCTGCATCTGTCT 57.116 39.130 0.00 0.00 0.00 3.41
6291 6488 6.983906 TCCTATTTGATCTGCATCTGTCTA 57.016 37.500 0.00 0.00 0.00 2.59
6292 6489 6.990798 TCCTATTTGATCTGCATCTGTCTAG 58.009 40.000 0.00 0.00 0.00 2.43
6293 6490 6.014755 TCCTATTTGATCTGCATCTGTCTAGG 60.015 42.308 0.00 0.00 0.00 3.02
6294 6491 4.412796 TTTGATCTGCATCTGTCTAGGG 57.587 45.455 0.00 0.00 0.00 3.53
6295 6492 1.690893 TGATCTGCATCTGTCTAGGGC 59.309 52.381 0.00 0.00 0.00 5.19
6297 6494 0.826715 TCTGCATCTGTCTAGGGCAC 59.173 55.000 0.00 0.00 33.30 5.01
6298 6495 0.538584 CTGCATCTGTCTAGGGCACA 59.461 55.000 0.00 0.00 33.30 4.57
6299 6496 1.140452 CTGCATCTGTCTAGGGCACAT 59.860 52.381 0.00 0.00 33.30 3.21
6300 6497 1.139654 TGCATCTGTCTAGGGCACATC 59.860 52.381 0.00 0.00 32.36 3.06
6301 6498 1.415659 GCATCTGTCTAGGGCACATCT 59.584 52.381 0.00 0.00 0.00 2.90
6302 6499 2.630098 GCATCTGTCTAGGGCACATCTA 59.370 50.000 0.00 0.00 0.00 1.98
6303 6500 3.305950 GCATCTGTCTAGGGCACATCTAG 60.306 52.174 0.00 0.00 36.46 2.43
6304 6501 3.953542 TCTGTCTAGGGCACATCTAGA 57.046 47.619 0.00 0.00 40.38 2.43
6305 6502 4.461450 TCTGTCTAGGGCACATCTAGAT 57.539 45.455 0.00 0.00 43.25 1.98
6306 6503 4.148079 TCTGTCTAGGGCACATCTAGATG 58.852 47.826 27.63 27.63 43.25 2.90
6321 6518 5.215252 TCTAGATGTGCCCTAGTTATTGC 57.785 43.478 0.00 0.00 36.06 3.56
6322 6519 3.931907 AGATGTGCCCTAGTTATTGCA 57.068 42.857 0.00 0.00 0.00 4.08
6327 6524 3.931907 TGCCCTAGTTATTGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
6329 6526 5.366482 TGCCCTAGTTATTGCACATCTAA 57.634 39.130 0.00 0.00 0.00 2.10
6330 6527 5.368145 TGCCCTAGTTATTGCACATCTAAG 58.632 41.667 0.00 0.00 0.00 2.18
6331 6528 5.104527 TGCCCTAGTTATTGCACATCTAAGT 60.105 40.000 0.00 0.00 0.00 2.24
6332 6529 5.237344 GCCCTAGTTATTGCACATCTAAGTG 59.763 44.000 0.00 0.00 42.37 3.16
6344 6541 6.492007 CACATCTAAGTGCTCAATCAAACT 57.508 37.500 0.00 0.00 32.04 2.66
6345 6542 7.601073 CACATCTAAGTGCTCAATCAAACTA 57.399 36.000 0.00 0.00 32.04 2.24
6346 6543 7.682824 CACATCTAAGTGCTCAATCAAACTAG 58.317 38.462 0.00 0.00 32.04 2.57
6347 6544 7.547019 CACATCTAAGTGCTCAATCAAACTAGA 59.453 37.037 0.00 0.00 32.04 2.43
6348 6545 8.097038 ACATCTAAGTGCTCAATCAAACTAGAA 58.903 33.333 0.00 0.00 0.00 2.10
6349 6546 8.939929 CATCTAAGTGCTCAATCAAACTAGAAA 58.060 33.333 0.00 0.00 0.00 2.52
6350 6547 8.539770 TCTAAGTGCTCAATCAAACTAGAAAG 57.460 34.615 0.00 0.00 0.00 2.62
6351 6548 8.367911 TCTAAGTGCTCAATCAAACTAGAAAGA 58.632 33.333 0.00 0.00 0.00 2.52
6352 6549 7.807977 AAGTGCTCAATCAAACTAGAAAGAA 57.192 32.000 0.00 0.00 0.00 2.52
6353 6550 7.807977 AGTGCTCAATCAAACTAGAAAGAAA 57.192 32.000 0.00 0.00 0.00 2.52
6354 6551 8.225603 AGTGCTCAATCAAACTAGAAAGAAAA 57.774 30.769 0.00 0.00 0.00 2.29
6355 6552 8.686334 AGTGCTCAATCAAACTAGAAAGAAAAA 58.314 29.630 0.00 0.00 0.00 1.94
6356 6553 8.962111 GTGCTCAATCAAACTAGAAAGAAAAAG 58.038 33.333 0.00 0.00 0.00 2.27
6357 6554 8.137437 TGCTCAATCAAACTAGAAAGAAAAAGG 58.863 33.333 0.00 0.00 0.00 3.11
6358 6555 8.352942 GCTCAATCAAACTAGAAAGAAAAAGGA 58.647 33.333 0.00 0.00 0.00 3.36
6384 6581 6.740411 AAAAGACAAAAGAAAATGCTTGCA 57.260 29.167 0.00 0.00 0.00 4.08
6385 6582 5.723492 AAGACAAAAGAAAATGCTTGCAC 57.277 34.783 0.00 0.00 0.00 4.57
6386 6583 4.757594 AGACAAAAGAAAATGCTTGCACA 58.242 34.783 0.00 0.00 0.00 4.57
6387 6584 5.177326 AGACAAAAGAAAATGCTTGCACAA 58.823 33.333 0.00 0.00 0.00 3.33
6388 6585 5.642919 AGACAAAAGAAAATGCTTGCACAAA 59.357 32.000 0.00 0.00 0.00 2.83
6389 6586 6.316890 AGACAAAAGAAAATGCTTGCACAAAT 59.683 30.769 0.00 0.00 0.00 2.32
6390 6587 6.488817 ACAAAAGAAAATGCTTGCACAAATC 58.511 32.000 0.00 0.00 0.00 2.17
6391 6588 6.316890 ACAAAAGAAAATGCTTGCACAAATCT 59.683 30.769 0.00 0.00 0.00 2.40
6392 6589 6.930667 AAAGAAAATGCTTGCACAAATCTT 57.069 29.167 0.00 3.63 0.00 2.40
6393 6590 8.336806 CAAAAGAAAATGCTTGCACAAATCTTA 58.663 29.630 0.00 0.00 0.00 2.10
6394 6591 7.647907 AAGAAAATGCTTGCACAAATCTTAG 57.352 32.000 0.00 0.00 0.00 2.18
6395 6592 6.752168 AGAAAATGCTTGCACAAATCTTAGT 58.248 32.000 0.00 0.00 0.00 2.24
6396 6593 6.643770 AGAAAATGCTTGCACAAATCTTAGTG 59.356 34.615 0.00 0.00 38.74 2.74
6397 6594 5.458041 AATGCTTGCACAAATCTTAGTGT 57.542 34.783 0.00 0.00 38.02 3.55
6398 6595 6.573664 AATGCTTGCACAAATCTTAGTGTA 57.426 33.333 0.00 0.00 38.02 2.90
6399 6596 6.573664 ATGCTTGCACAAATCTTAGTGTAA 57.426 33.333 0.00 0.00 37.87 2.41
6400 6597 6.384258 TGCTTGCACAAATCTTAGTGTAAA 57.616 33.333 0.00 0.00 39.28 2.01
6401 6598 6.800543 TGCTTGCACAAATCTTAGTGTAAAA 58.199 32.000 0.00 0.00 39.28 1.52
6402 6599 7.432869 TGCTTGCACAAATCTTAGTGTAAAAT 58.567 30.769 0.00 0.00 39.28 1.82
6403 6600 7.594758 TGCTTGCACAAATCTTAGTGTAAAATC 59.405 33.333 0.00 0.00 39.28 2.17
6404 6601 7.594758 GCTTGCACAAATCTTAGTGTAAAATCA 59.405 33.333 0.00 0.00 39.28 2.57
6405 6602 9.462174 CTTGCACAAATCTTAGTGTAAAATCAA 57.538 29.630 0.00 0.00 39.28 2.57
6406 6603 9.979578 TTGCACAAATCTTAGTGTAAAATCAAT 57.020 25.926 0.00 0.00 37.40 2.57
6407 6604 9.409312 TGCACAAATCTTAGTGTAAAATCAATG 57.591 29.630 0.00 0.00 38.02 2.82
6408 6605 9.624697 GCACAAATCTTAGTGTAAAATCAATGA 57.375 29.630 0.00 0.00 38.02 2.57
6426 6623 9.664332 AATCAATGATATAGGACTTAGATGTGC 57.336 33.333 0.00 0.00 0.00 4.57
6427 6624 7.315890 TCAATGATATAGGACTTAGATGTGCG 58.684 38.462 0.00 0.00 33.42 5.34
6428 6625 7.176690 TCAATGATATAGGACTTAGATGTGCGA 59.823 37.037 0.00 0.00 33.42 5.10
6429 6626 7.652524 ATGATATAGGACTTAGATGTGCGAT 57.347 36.000 0.00 0.00 33.42 4.58
6430 6627 8.753497 ATGATATAGGACTTAGATGTGCGATA 57.247 34.615 0.00 0.00 32.71 2.92
6431 6628 7.986562 TGATATAGGACTTAGATGTGCGATAC 58.013 38.462 0.00 0.00 31.52 2.24
6432 6629 7.829706 TGATATAGGACTTAGATGTGCGATACT 59.170 37.037 0.00 0.00 31.52 2.12
6433 6630 6.902771 ATAGGACTTAGATGTGCGATACTT 57.097 37.500 0.00 0.00 33.42 2.24
6434 6631 7.997773 ATAGGACTTAGATGTGCGATACTTA 57.002 36.000 0.00 0.00 33.42 2.24
6435 6632 6.902771 AGGACTTAGATGTGCGATACTTAT 57.097 37.500 0.00 0.00 33.42 1.73
6436 6633 7.997773 AGGACTTAGATGTGCGATACTTATA 57.002 36.000 0.00 0.00 33.42 0.98
6437 6634 8.046294 AGGACTTAGATGTGCGATACTTATAG 57.954 38.462 0.00 0.00 33.42 1.31
6438 6635 6.748198 GGACTTAGATGTGCGATACTTATAGC 59.252 42.308 0.00 0.00 35.29 2.97
6439 6636 7.215719 ACTTAGATGTGCGATACTTATAGCA 57.784 36.000 0.38 0.38 41.04 3.49
6448 6645 7.631717 TGCGATACTTATAGCACATCTAGAT 57.368 36.000 0.00 0.00 38.97 1.98
6449 6646 7.475840 TGCGATACTTATAGCACATCTAGATG 58.524 38.462 27.63 27.63 38.97 2.90
6474 6671 6.164408 GCTTTAGCAAAACTGTTGTGTTTT 57.836 33.333 12.06 0.00 46.96 2.43
6476 6673 6.090763 GCTTTAGCAAAACTGTTGTGTTTTCT 59.909 34.615 12.06 3.69 45.04 2.52
6511 6708 2.274542 TCTAGGTTTGATGGGAAGCCA 58.725 47.619 0.00 0.00 0.00 4.75
6597 6794 6.459985 CGATGCCCAATTTTGATGTTATCTCA 60.460 38.462 0.00 0.00 0.00 3.27
6657 6854 4.912214 TCAGCATGATTTGAGTAAATGCG 58.088 39.130 0.00 0.00 42.56 4.73
6674 6871 3.878086 TGCGACTCAGTTTTGTCATTC 57.122 42.857 0.00 0.00 33.18 2.67
6675 6872 2.548057 TGCGACTCAGTTTTGTCATTCC 59.452 45.455 0.00 0.00 33.18 3.01
6693 6891 2.547990 TCCTTGGAGAACCTACCCTTC 58.452 52.381 0.00 0.00 37.04 3.46
6728 6926 8.061304 TCAAATATAGAAAGGCCTTCCTGAATT 58.939 33.333 20.79 12.62 43.40 2.17
6743 6941 8.778358 CCTTCCTGAATTCTATTGCATAGTTAC 58.222 37.037 7.05 0.00 34.47 2.50
6752 6950 4.825546 ATTGCATAGTTACTCTGCATGC 57.174 40.909 22.59 16.24 41.76 4.06
6826 7028 2.159430 CGACGAGAATGGAATTGCAACA 59.841 45.455 2.94 0.00 36.07 3.33
6862 7064 1.937191 TCACTACATCAGCTGGTCCA 58.063 50.000 15.13 0.00 0.00 4.02
6948 7150 6.458232 AACATTGGTGTGCTACTAAAACAA 57.542 33.333 0.00 0.00 38.92 2.83
6992 7195 8.780249 GTCGTAATGCCCATATTAAATGTTACT 58.220 33.333 0.00 0.00 0.00 2.24
6993 7196 8.779303 TCGTAATGCCCATATTAAATGTTACTG 58.221 33.333 0.00 0.00 0.00 2.74
6994 7197 8.779303 CGTAATGCCCATATTAAATGTTACTGA 58.221 33.333 0.00 0.00 0.00 3.41
7068 7271 3.296322 TTTGTCTATGCGCAAAAAGGG 57.704 42.857 17.11 0.99 32.46 3.95
7069 7272 1.173043 TGTCTATGCGCAAAAAGGGG 58.827 50.000 17.11 0.00 0.00 4.79
7070 7273 0.455815 GTCTATGCGCAAAAAGGGGG 59.544 55.000 17.11 0.00 0.00 5.40
7140 7346 0.326264 GTCCTGTGCTGAGAATGGGT 59.674 55.000 0.00 0.00 0.00 4.51
7142 7348 1.425066 TCCTGTGCTGAGAATGGGTTT 59.575 47.619 0.00 0.00 0.00 3.27
7149 7355 2.787994 CTGAGAATGGGTTTGCTCAGT 58.212 47.619 0.00 0.00 45.69 3.41
7150 7356 3.152341 CTGAGAATGGGTTTGCTCAGTT 58.848 45.455 0.00 0.00 45.69 3.16
7236 7478 3.851976 ACCTGTAGCTGTTTAGAGACG 57.148 47.619 0.00 0.00 0.00 4.18
7240 7482 3.151554 TGTAGCTGTTTAGAGACGACCA 58.848 45.455 0.00 0.00 0.00 4.02
7256 7498 2.611473 CGACCAAGTGATCTGAAGCAGT 60.611 50.000 0.00 0.00 32.61 4.40
7257 7499 3.406764 GACCAAGTGATCTGAAGCAGTT 58.593 45.455 0.00 0.00 34.83 3.16
7258 7500 4.569943 GACCAAGTGATCTGAAGCAGTTA 58.430 43.478 0.00 0.00 32.79 2.24
7259 7501 4.973168 ACCAAGTGATCTGAAGCAGTTAA 58.027 39.130 0.00 0.00 32.79 2.01
7260 7502 4.999950 ACCAAGTGATCTGAAGCAGTTAAG 59.000 41.667 0.00 3.12 32.79 1.85
7261 7503 4.999950 CCAAGTGATCTGAAGCAGTTAAGT 59.000 41.667 0.00 0.00 32.79 2.24
7262 7504 6.166279 CCAAGTGATCTGAAGCAGTTAAGTA 58.834 40.000 0.00 0.00 32.79 2.24
7263 7505 6.091441 CCAAGTGATCTGAAGCAGTTAAGTAC 59.909 42.308 0.00 0.00 32.79 2.73
7264 7506 6.597832 AGTGATCTGAAGCAGTTAAGTACT 57.402 37.500 0.00 0.00 37.68 2.73
7265 7507 6.998802 AGTGATCTGAAGCAGTTAAGTACTT 58.001 36.000 13.68 13.68 33.85 2.24
7266 7508 8.123639 AGTGATCTGAAGCAGTTAAGTACTTA 57.876 34.615 11.38 11.38 33.85 2.24
7267 7509 8.030106 AGTGATCTGAAGCAGTTAAGTACTTAC 58.970 37.037 14.96 10.24 33.85 2.34
7268 7510 7.813148 GTGATCTGAAGCAGTTAAGTACTTACA 59.187 37.037 14.96 7.17 33.85 2.41
7269 7511 8.531982 TGATCTGAAGCAGTTAAGTACTTACAT 58.468 33.333 14.96 4.05 33.85 2.29
7270 7512 8.934507 ATCTGAAGCAGTTAAGTACTTACATC 57.065 34.615 14.96 6.97 33.85 3.06
7271 7513 8.123639 TCTGAAGCAGTTAAGTACTTACATCT 57.876 34.615 14.96 10.67 33.85 2.90
7272 7514 8.585881 TCTGAAGCAGTTAAGTACTTACATCTT 58.414 33.333 14.96 14.23 33.85 2.40
7273 7515 9.209175 CTGAAGCAGTTAAGTACTTACATCTTT 57.791 33.333 14.96 7.53 33.85 2.52
7274 7516 9.204570 TGAAGCAGTTAAGTACTTACATCTTTC 57.795 33.333 14.96 15.00 33.85 2.62
7275 7517 9.204570 GAAGCAGTTAAGTACTTACATCTTTCA 57.795 33.333 14.96 0.00 33.85 2.69
7276 7518 9.726438 AAGCAGTTAAGTACTTACATCTTTCAT 57.274 29.630 14.96 0.78 33.85 2.57
7277 7519 9.726438 AGCAGTTAAGTACTTACATCTTTCATT 57.274 29.630 14.96 0.00 33.85 2.57
7278 7520 9.974750 GCAGTTAAGTACTTACATCTTTCATTC 57.025 33.333 14.96 0.00 33.85 2.67
7280 7522 8.870879 AGTTAAGTACTTACATCTTTCATTCGC 58.129 33.333 14.96 0.00 31.29 4.70
7281 7523 8.653338 GTTAAGTACTTACATCTTTCATTCGCA 58.347 33.333 14.96 0.00 0.00 5.10
7282 7524 7.667043 AAGTACTTACATCTTTCATTCGCAA 57.333 32.000 6.26 0.00 0.00 4.85
7283 7525 7.667043 AGTACTTACATCTTTCATTCGCAAA 57.333 32.000 0.00 0.00 0.00 3.68
7284 7526 8.094798 AGTACTTACATCTTTCATTCGCAAAA 57.905 30.769 0.00 0.00 0.00 2.44
7285 7527 8.564574 AGTACTTACATCTTTCATTCGCAAAAA 58.435 29.630 0.00 0.00 0.00 1.94
7399 7644 3.825908 TGGCCCAATACTTCTTCCTTT 57.174 42.857 0.00 0.00 0.00 3.11
7432 7677 1.751927 CCTGACCTGCATCTTGCCC 60.752 63.158 0.00 0.00 44.23 5.36
7484 7734 1.597854 CTTGCCCTTCTCGCACACA 60.598 57.895 0.00 0.00 35.56 3.72
7485 7735 1.572085 CTTGCCCTTCTCGCACACAG 61.572 60.000 0.00 0.00 35.56 3.66
7497 7747 1.299541 GCACACAGGGGAATACATCG 58.700 55.000 0.00 0.00 0.00 3.84
7499 7749 2.826428 CACACAGGGGAATACATCGAG 58.174 52.381 0.00 0.00 0.00 4.04
7502 7752 2.040178 ACAGGGGAATACATCGAGTCC 58.960 52.381 0.00 0.00 0.00 3.85
7535 7785 1.579084 TTTGGCCGCAACCGTCATAC 61.579 55.000 0.00 0.00 0.00 2.39
7561 7811 6.546428 AGTTTAGCCTAGAAGCTGAATGTA 57.454 37.500 3.96 0.00 44.67 2.29
7562 7812 6.578023 AGTTTAGCCTAGAAGCTGAATGTAG 58.422 40.000 3.96 0.00 44.67 2.74
7563 7813 6.155393 AGTTTAGCCTAGAAGCTGAATGTAGT 59.845 38.462 3.96 0.00 44.67 2.73
7665 7939 2.211619 ATCCATTTGCGCCCACGTTG 62.212 55.000 4.18 0.00 42.83 4.10
7666 7940 2.430582 CATTTGCGCCCACGTTGG 60.431 61.111 4.18 0.16 42.83 3.77
7667 7941 2.909965 ATTTGCGCCCACGTTGGT 60.910 55.556 4.18 0.00 42.83 3.67
7678 7952 1.403679 CCACGTTGGTTTTGCTCTTGA 59.596 47.619 0.00 0.00 31.35 3.02
7681 7955 2.687935 ACGTTGGTTTTGCTCTTGACAT 59.312 40.909 0.00 0.00 0.00 3.06
7686 7960 2.397549 GTTTTGCTCTTGACATGGTGC 58.602 47.619 0.00 0.00 0.00 5.01
7688 7962 0.111061 TTGCTCTTGACATGGTGCCT 59.889 50.000 0.00 0.00 0.00 4.75
7794 8069 4.947388 GGCATCATTTTACTGGTTCCTACA 59.053 41.667 0.00 0.00 0.00 2.74
7798 8073 6.381498 TCATTTTACTGGTTCCTACATCCA 57.619 37.500 0.00 0.00 0.00 3.41
7820 8095 0.178921 AGAACTGGAGCTGACCCTCA 60.179 55.000 0.00 0.00 33.47 3.86
7838 8113 4.399303 CCCTCATGACCTGAAAAATGTACC 59.601 45.833 0.00 0.00 32.14 3.34
7841 8116 5.640147 TCATGACCTGAAAAATGTACCCTT 58.360 37.500 0.00 0.00 0.00 3.95
7842 8117 5.710099 TCATGACCTGAAAAATGTACCCTTC 59.290 40.000 0.00 0.00 0.00 3.46
7843 8118 5.319043 TGACCTGAAAAATGTACCCTTCT 57.681 39.130 0.00 0.00 0.00 2.85
7844 8119 5.701224 TGACCTGAAAAATGTACCCTTCTT 58.299 37.500 0.00 0.00 0.00 2.52
7845 8120 6.133356 TGACCTGAAAAATGTACCCTTCTTT 58.867 36.000 0.00 0.00 0.00 2.52
7846 8121 6.040391 TGACCTGAAAAATGTACCCTTCTTTG 59.960 38.462 0.00 0.00 0.00 2.77
7847 8122 6.133356 ACCTGAAAAATGTACCCTTCTTTGA 58.867 36.000 0.00 0.00 0.00 2.69
7848 8123 6.265422 ACCTGAAAAATGTACCCTTCTTTGAG 59.735 38.462 0.00 0.00 0.00 3.02
7851 8126 8.299990 TGAAAAATGTACCCTTCTTTGAGAAA 57.700 30.769 0.00 0.00 33.19 2.52
7863 8138 6.830324 CCTTCTTTGAGAAATCATGGTATCCA 59.170 38.462 0.00 0.00 33.19 3.41
7864 8139 7.504911 CCTTCTTTGAGAAATCATGGTATCCAT 59.495 37.037 0.00 0.00 38.07 3.41
7871 8146 5.532406 AGAAATCATGGTATCCATTCCAACG 59.468 40.000 0.00 0.00 42.23 4.10
7880 8155 1.697432 TCCATTCCAACGAACTCCACT 59.303 47.619 0.00 0.00 0.00 4.00
7898 8174 6.916387 ACTCCACTTTACGAATATGTACATCG 59.084 38.462 12.68 13.58 42.05 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 3.486875 CGCGAGGGATTTAATGGTGAAAC 60.487 47.826 0.00 0.00 0.00 2.78
197 201 5.278463 GGCAACTTCAGTGTAAACATCATGT 60.278 40.000 0.00 0.00 0.00 3.21
280 286 7.390718 GGCAAGTCTAGTTTCTTAATTTCCTGA 59.609 37.037 0.00 0.00 0.00 3.86
521 539 5.387855 CGTCTTGACGAGATCTTCAAAACTG 60.388 44.000 17.00 2.72 36.61 3.16
540 558 8.335532 TCTGTTTTCATCATTAAATCCGTCTT 57.664 30.769 0.00 0.00 0.00 3.01
675 695 0.682292 TCTTACACATCGCCCACACA 59.318 50.000 0.00 0.00 0.00 3.72
730 750 2.030805 AGCTGGACGTGAATGCTTTTTC 60.031 45.455 0.00 0.00 0.00 2.29
733 753 0.877071 CAGCTGGACGTGAATGCTTT 59.123 50.000 5.57 0.00 0.00 3.51
736 756 0.110056 CAACAGCTGGACGTGAATGC 60.110 55.000 19.93 0.00 0.00 3.56
737 757 0.110056 GCAACAGCTGGACGTGAATG 60.110 55.000 19.93 4.88 0.00 2.67
739 759 0.463654 AAGCAACAGCTGGACGTGAA 60.464 50.000 19.93 0.00 38.93 3.18
740 760 0.463654 AAAGCAACAGCTGGACGTGA 60.464 50.000 19.93 0.00 38.93 4.35
741 761 0.317269 CAAAGCAACAGCTGGACGTG 60.317 55.000 19.93 11.26 38.93 4.49
742 762 2.024918 CAAAGCAACAGCTGGACGT 58.975 52.632 19.93 1.92 38.93 4.34
743 763 1.370900 GCAAAGCAACAGCTGGACG 60.371 57.895 19.93 6.80 38.93 4.79
744 764 1.238439 TAGCAAAGCAACAGCTGGAC 58.762 50.000 19.93 6.73 38.93 4.02
745 765 2.086869 GATAGCAAAGCAACAGCTGGA 58.913 47.619 19.93 0.00 38.93 3.86
746 766 1.133790 GGATAGCAAAGCAACAGCTGG 59.866 52.381 19.93 1.57 38.93 4.85
747 767 1.814394 TGGATAGCAAAGCAACAGCTG 59.186 47.619 13.48 13.48 38.93 4.24
748 768 1.815003 GTGGATAGCAAAGCAACAGCT 59.185 47.619 0.00 0.00 41.23 4.24
749 769 1.541147 TGTGGATAGCAAAGCAACAGC 59.459 47.619 0.00 0.00 0.00 4.40
750 770 2.095059 GGTGTGGATAGCAAAGCAACAG 60.095 50.000 0.00 0.00 0.00 3.16
751 771 1.885887 GGTGTGGATAGCAAAGCAACA 59.114 47.619 0.00 0.00 0.00 3.33
752 772 1.135689 CGGTGTGGATAGCAAAGCAAC 60.136 52.381 0.00 0.00 0.00 4.17
753 773 1.164411 CGGTGTGGATAGCAAAGCAA 58.836 50.000 0.00 0.00 0.00 3.91
754 774 1.305219 GCGGTGTGGATAGCAAAGCA 61.305 55.000 0.00 0.00 0.00 3.91
755 775 1.026718 AGCGGTGTGGATAGCAAAGC 61.027 55.000 0.00 0.00 0.00 3.51
756 776 1.009829 GAGCGGTGTGGATAGCAAAG 58.990 55.000 0.00 0.00 0.00 2.77
757 777 0.739462 CGAGCGGTGTGGATAGCAAA 60.739 55.000 0.00 0.00 0.00 3.68
758 778 1.153647 CGAGCGGTGTGGATAGCAA 60.154 57.895 0.00 0.00 0.00 3.91
759 779 2.494445 CGAGCGGTGTGGATAGCA 59.506 61.111 0.00 0.00 0.00 3.49
760 780 2.279517 CCGAGCGGTGTGGATAGC 60.280 66.667 0.00 0.00 0.00 2.97
770 790 1.153901 ACGTAACATGACCGAGCGG 60.154 57.895 7.48 7.48 42.03 5.52
771 791 1.988409 CACGTAACATGACCGAGCG 59.012 57.895 0.00 0.00 0.00 5.03
772 792 0.736325 AGCACGTAACATGACCGAGC 60.736 55.000 0.00 8.58 38.24 5.03
773 793 0.992072 CAGCACGTAACATGACCGAG 59.008 55.000 0.00 0.00 0.00 4.63
774 794 1.011968 GCAGCACGTAACATGACCGA 61.012 55.000 0.00 0.00 0.00 4.69
775 795 1.014044 AGCAGCACGTAACATGACCG 61.014 55.000 0.00 0.38 0.00 4.79
776 796 0.721718 GAGCAGCACGTAACATGACC 59.278 55.000 0.00 0.00 0.00 4.02
777 797 0.721718 GGAGCAGCACGTAACATGAC 59.278 55.000 0.00 0.00 0.00 3.06
778 798 0.735978 CGGAGCAGCACGTAACATGA 60.736 55.000 0.00 0.00 0.00 3.07
779 799 1.695893 CCGGAGCAGCACGTAACATG 61.696 60.000 0.00 0.00 0.00 3.21
780 800 1.447838 CCGGAGCAGCACGTAACAT 60.448 57.895 0.00 0.00 0.00 2.71
781 801 2.048597 CCGGAGCAGCACGTAACA 60.049 61.111 0.00 0.00 0.00 2.41
782 802 3.488090 GCCGGAGCAGCACGTAAC 61.488 66.667 5.05 0.00 39.53 2.50
783 803 4.752879 GGCCGGAGCAGCACGTAA 62.753 66.667 5.05 0.00 42.56 3.18
851 871 4.947388 ACGCTTTATTTTTATGGGCTCAGA 59.053 37.500 0.00 0.00 0.00 3.27
853 873 4.702612 TGACGCTTTATTTTTATGGGCTCA 59.297 37.500 0.00 0.00 0.00 4.26
867 887 0.391228 TGGACTGTGCTGACGCTTTA 59.609 50.000 0.00 0.00 36.97 1.85
873 893 5.181690 TGTTAAATTTGGACTGTGCTGAC 57.818 39.130 0.00 0.00 0.00 3.51
878 898 9.757227 TTTTTCCTATGTTAAATTTGGACTGTG 57.243 29.630 0.00 0.00 0.00 3.66
891 911 4.595986 GCTGGTCCCTTTTTCCTATGTTA 58.404 43.478 0.00 0.00 0.00 2.41
908 946 2.117206 TCATTTTGGGCCGCTGGT 59.883 55.556 0.00 0.00 0.00 4.00
965 1003 2.721425 TTTTCCACGGACAAAGGAGT 57.279 45.000 0.00 0.00 32.11 3.85
1083 1121 1.213296 GTGGAAGAATGGAGGGGCTA 58.787 55.000 0.00 0.00 0.00 3.93
1094 1132 5.596772 CCCAAAGGTTTTAAGAGTGGAAGAA 59.403 40.000 0.00 0.00 0.00 2.52
1095 1133 5.137551 CCCAAAGGTTTTAAGAGTGGAAGA 58.862 41.667 0.00 0.00 0.00 2.87
1231 1270 0.609957 CAGAGCCCCACAAATCTGCA 60.610 55.000 0.00 0.00 33.41 4.41
1253 1292 9.457436 AACTTAATTATCGGTGAACTAACCATT 57.543 29.630 0.00 0.00 40.53 3.16
1293 1332 8.895845 GCATAATAACAACATGAGATTTAAGCG 58.104 33.333 0.00 0.00 0.00 4.68
1338 1377 7.147312 ACCAAATCATGTATAAAATCGCCATG 58.853 34.615 0.00 0.00 35.39 3.66
1456 1495 0.604511 AGCAAAACGGACCCCTAACG 60.605 55.000 0.00 0.00 0.00 3.18
1494 1533 8.663025 TGTATTCCGTAACGTATTATTTTTGCA 58.337 29.630 0.00 0.00 0.00 4.08
1495 1534 9.654417 ATGTATTCCGTAACGTATTATTTTTGC 57.346 29.630 0.00 0.00 0.00 3.68
1543 1582 9.778741 ACTTGACATTCTGAACTTATTTAGACA 57.221 29.630 0.00 0.00 30.58 3.41
1651 1690 4.514545 TTAGCGCGAAAGATGTATGTTG 57.485 40.909 12.10 0.00 0.00 3.33
1667 1706 6.823689 AGCCATATTAACCAGGATATTTAGCG 59.176 38.462 0.00 0.00 0.00 4.26
1712 1751 5.054477 ACCCGATTGATAACAATTACTCCG 58.946 41.667 0.00 0.00 45.30 4.63
1758 1797 8.880878 TTTCAGCGATTAGTATAACAAGCATA 57.119 30.769 0.00 0.00 0.00 3.14
1762 1801 7.621991 CACCTTTCAGCGATTAGTATAACAAG 58.378 38.462 0.00 0.00 0.00 3.16
1812 1851 7.113658 TCTAACTAGGCTACTCAATTCCTTG 57.886 40.000 0.00 0.00 0.00 3.61
1921 1962 9.847224 TCTAAGTATCAAAAATATTGGAGGACC 57.153 33.333 0.00 0.00 0.00 4.46
1991 2032 9.533831 TTAAGATATATGACAGAGACTATGCCA 57.466 33.333 0.00 0.00 0.00 4.92
2203 2246 5.659440 ACCGCCTTAAAAACAATGATCAT 57.341 34.783 1.18 1.18 0.00 2.45
2206 2249 5.623596 GCCTTACCGCCTTAAAAACAATGAT 60.624 40.000 0.00 0.00 0.00 2.45
2208 2251 3.924073 GCCTTACCGCCTTAAAAACAATG 59.076 43.478 0.00 0.00 0.00 2.82
2209 2252 3.366577 CGCCTTACCGCCTTAAAAACAAT 60.367 43.478 0.00 0.00 0.00 2.71
2210 2253 2.030981 CGCCTTACCGCCTTAAAAACAA 60.031 45.455 0.00 0.00 0.00 2.83
2211 2254 1.536331 CGCCTTACCGCCTTAAAAACA 59.464 47.619 0.00 0.00 0.00 2.83
2212 2255 1.805943 TCGCCTTACCGCCTTAAAAAC 59.194 47.619 0.00 0.00 0.00 2.43
2213 2256 1.805943 GTCGCCTTACCGCCTTAAAAA 59.194 47.619 0.00 0.00 0.00 1.94
2214 2257 1.441738 GTCGCCTTACCGCCTTAAAA 58.558 50.000 0.00 0.00 0.00 1.52
2215 2258 0.391528 GGTCGCCTTACCGCCTTAAA 60.392 55.000 0.00 0.00 0.00 1.52
2216 2259 1.218854 GGTCGCCTTACCGCCTTAA 59.781 57.895 0.00 0.00 0.00 1.85
2217 2260 0.395586 TAGGTCGCCTTACCGCCTTA 60.396 55.000 3.71 0.00 44.77 2.69
2218 2261 1.259840 TTAGGTCGCCTTACCGCCTT 61.260 55.000 3.71 0.00 44.77 4.35
2219 2262 1.673808 CTTAGGTCGCCTTACCGCCT 61.674 60.000 3.71 0.00 44.77 5.52
2220 2263 1.227176 CTTAGGTCGCCTTACCGCC 60.227 63.158 3.71 0.00 44.77 6.13
2221 2264 1.227176 CCTTAGGTCGCCTTACCGC 60.227 63.158 3.71 0.00 44.77 5.68
2222 2265 1.227176 GCCTTAGGTCGCCTTACCG 60.227 63.158 0.00 0.00 44.77 4.02
2223 2266 1.227176 CGCCTTAGGTCGCCTTACC 60.227 63.158 0.00 0.00 40.06 2.85
2224 2267 0.248949 CTCGCCTTAGGTCGCCTTAC 60.249 60.000 9.56 0.00 34.61 2.34
2225 2268 2.012902 GCTCGCCTTAGGTCGCCTTA 62.013 60.000 9.56 0.00 34.61 2.69
2226 2269 2.893398 CTCGCCTTAGGTCGCCTT 59.107 61.111 9.56 0.00 34.61 4.35
2227 2270 3.839432 GCTCGCCTTAGGTCGCCT 61.839 66.667 9.56 3.87 37.71 5.52
2228 2271 4.143333 TGCTCGCCTTAGGTCGCC 62.143 66.667 9.56 5.02 0.00 5.54
2229 2272 2.886124 GTGCTCGCCTTAGGTCGC 60.886 66.667 9.56 6.05 0.00 5.19
2230 2273 2.202756 GGTGCTCGCCTTAGGTCG 60.203 66.667 0.00 4.42 0.00 4.79
2231 2274 1.448013 GTGGTGCTCGCCTTAGGTC 60.448 63.158 0.00 0.00 0.00 3.85
2232 2275 2.663196 GTGGTGCTCGCCTTAGGT 59.337 61.111 0.00 0.00 0.00 3.08
2233 2276 2.125106 GGTGGTGCTCGCCTTAGG 60.125 66.667 0.00 0.00 42.62 2.69
2234 2277 2.125106 GGGTGGTGCTCGCCTTAG 60.125 66.667 9.43 0.00 45.18 2.18
2235 2278 4.077184 CGGGTGGTGCTCGCCTTA 62.077 66.667 9.43 0.00 45.18 2.69
2280 2323 0.180406 ACAACTATGCCCGCCTTAGG 59.820 55.000 0.00 0.00 0.00 2.69
2281 2324 2.902705 TACAACTATGCCCGCCTTAG 57.097 50.000 0.00 0.00 0.00 2.18
2282 2325 2.158871 CCTTACAACTATGCCCGCCTTA 60.159 50.000 0.00 0.00 0.00 2.69
2283 2326 1.408266 CCTTACAACTATGCCCGCCTT 60.408 52.381 0.00 0.00 0.00 4.35
2284 2327 0.180406 CCTTACAACTATGCCCGCCT 59.820 55.000 0.00 0.00 0.00 5.52
2285 2328 1.444917 GCCTTACAACTATGCCCGCC 61.445 60.000 0.00 0.00 0.00 6.13
2286 2329 1.772063 CGCCTTACAACTATGCCCGC 61.772 60.000 0.00 0.00 0.00 6.13
2287 2330 1.772063 GCGCCTTACAACTATGCCCG 61.772 60.000 0.00 0.00 0.00 6.13
2288 2331 0.463833 AGCGCCTTACAACTATGCCC 60.464 55.000 2.29 0.00 0.00 5.36
2289 2332 0.657840 CAGCGCCTTACAACTATGCC 59.342 55.000 2.29 0.00 0.00 4.40
2290 2333 0.028110 GCAGCGCCTTACAACTATGC 59.972 55.000 2.29 0.00 0.00 3.14
2291 2334 0.657840 GGCAGCGCCTTACAACTATG 59.342 55.000 2.29 0.00 46.69 2.23
2292 2335 3.080647 GGCAGCGCCTTACAACTAT 57.919 52.632 2.29 0.00 46.69 2.12
2293 2336 4.609995 GGCAGCGCCTTACAACTA 57.390 55.556 2.29 0.00 46.69 2.24
2325 2368 1.450312 CCTGCCTTGGACGCTTAGG 60.450 63.158 0.00 0.00 0.00 2.69
2326 2369 0.741221 GTCCTGCCTTGGACGCTTAG 60.741 60.000 5.14 0.00 45.69 2.18
2327 2370 1.295423 GTCCTGCCTTGGACGCTTA 59.705 57.895 5.14 0.00 45.69 3.09
2328 2371 2.032681 GTCCTGCCTTGGACGCTT 59.967 61.111 5.14 0.00 45.69 4.68
2339 2382 2.227865 TCATTGTTTTAAGGCGTCCTGC 59.772 45.455 0.00 0.00 45.38 4.85
2340 2383 3.365969 GGTCATTGTTTTAAGGCGTCCTG 60.366 47.826 0.00 0.00 32.13 3.86
2341 2384 2.817844 GGTCATTGTTTTAAGGCGTCCT 59.182 45.455 0.00 0.00 33.87 3.85
2342 2385 2.413634 CGGTCATTGTTTTAAGGCGTCC 60.414 50.000 0.00 0.00 0.00 4.79
2343 2386 2.224784 ACGGTCATTGTTTTAAGGCGTC 59.775 45.455 0.00 0.00 0.00 5.19
2344 2387 2.031508 CACGGTCATTGTTTTAAGGCGT 60.032 45.455 0.00 0.00 0.00 5.68
2345 2388 2.580589 CACGGTCATTGTTTTAAGGCG 58.419 47.619 0.00 0.00 0.00 5.52
2346 2389 2.030274 AGCACGGTCATTGTTTTAAGGC 60.030 45.455 0.00 0.00 0.00 4.35
2347 2390 3.915437 AGCACGGTCATTGTTTTAAGG 57.085 42.857 0.00 0.00 0.00 2.69
2348 2391 6.422776 AGATAGCACGGTCATTGTTTTAAG 57.577 37.500 0.00 0.00 0.00 1.85
2349 2392 6.811253 AAGATAGCACGGTCATTGTTTTAA 57.189 33.333 0.00 0.00 0.00 1.52
2350 2393 6.401688 CGAAAGATAGCACGGTCATTGTTTTA 60.402 38.462 0.00 0.00 0.00 1.52
2351 2394 5.616866 CGAAAGATAGCACGGTCATTGTTTT 60.617 40.000 0.00 0.00 0.00 2.43
2352 2395 4.142902 CGAAAGATAGCACGGTCATTGTTT 60.143 41.667 0.00 0.00 0.00 2.83
2353 2396 3.370978 CGAAAGATAGCACGGTCATTGTT 59.629 43.478 0.00 0.00 0.00 2.83
2354 2397 2.930040 CGAAAGATAGCACGGTCATTGT 59.070 45.455 0.00 0.00 0.00 2.71
2355 2398 2.930040 ACGAAAGATAGCACGGTCATTG 59.070 45.455 0.00 0.00 0.00 2.82
2356 2399 3.247006 ACGAAAGATAGCACGGTCATT 57.753 42.857 0.00 0.00 0.00 2.57
2357 2400 2.961526 ACGAAAGATAGCACGGTCAT 57.038 45.000 0.00 0.00 0.00 3.06
2358 2401 3.853831 TTACGAAAGATAGCACGGTCA 57.146 42.857 0.00 0.00 0.00 4.02
2359 2402 5.490213 CAAATTACGAAAGATAGCACGGTC 58.510 41.667 0.00 0.00 0.00 4.79
2392 2435 4.559153 CGAGAAGGGCAAAATTTGTTCAT 58.441 39.130 7.60 0.00 0.00 2.57
2414 2457 6.420008 CCATGCAAATAAAGCTTGATAAGAGC 59.580 38.462 0.00 1.35 38.88 4.09
2509 2552 4.084118 GCTCGCAATATCATTCTCCTTGAC 60.084 45.833 0.00 0.00 0.00 3.18
2598 2641 9.890629 ATAAGCAGTAGTGAACAGAATTAATGA 57.109 29.630 0.42 0.00 0.00 2.57
2700 2743 1.746470 TGCATGCTGTTCTCCATCAG 58.254 50.000 20.33 0.00 35.12 2.90
2839 2882 8.745590 GGTGTTCATGTAAATGGGTAAAGTTAT 58.254 33.333 0.00 0.00 0.00 1.89
2857 2900 6.038603 CCAAATGAAGATATGACGGTGTTCAT 59.961 38.462 0.00 0.00 39.61 2.57
2894 2944 5.449107 TTGAGTAGTAAGACAGTGACCAC 57.551 43.478 0.00 0.00 0.00 4.16
3079 3139 6.040391 CCCACAGGAACAAGATAAGACAAAAA 59.960 38.462 0.00 0.00 33.47 1.94
3090 3150 1.071699 GTACAGCCCACAGGAACAAGA 59.928 52.381 0.00 0.00 33.47 3.02
3251 3314 9.607333 AGATCTGGTCCAGTAATTTCAGATATA 57.393 33.333 18.65 0.00 40.64 0.86
3351 3414 2.876550 AGTGTCGAAAGGTGTAAAAGCC 59.123 45.455 0.00 0.00 0.00 4.35
3484 3554 7.370383 CCTGACAATGTGGGCATAATATTAAC 58.630 38.462 0.00 0.00 34.39 2.01
3568 3638 5.284660 GTCAAGTTTATCTTTTGCAGCATCG 59.715 40.000 0.00 0.00 33.63 3.84
3571 3641 4.340666 TGGTCAAGTTTATCTTTTGCAGCA 59.659 37.500 0.00 0.00 33.63 4.41
3963 4121 3.327757 TCTTTGGGTGCTGTCAAGTAGAT 59.672 43.478 0.00 0.00 0.00 1.98
4030 4188 2.328099 CCGCAACCTTCTGTCCTGC 61.328 63.158 0.00 0.00 0.00 4.85
4129 4287 7.399523 CACGAGTGCCTTCTACAAATAATAAC 58.600 38.462 0.00 0.00 0.00 1.89
4299 4458 2.781681 AGTATGACCGGTCTTTTGGG 57.218 50.000 33.39 0.00 0.00 4.12
4364 4523 3.134804 GCTAACCTGCTCTCCTTCCATTA 59.865 47.826 0.00 0.00 0.00 1.90
4367 4526 0.905357 GCTAACCTGCTCTCCTTCCA 59.095 55.000 0.00 0.00 0.00 3.53
4376 4535 1.957113 GCCCATGAAAGCTAACCTGCT 60.957 52.381 0.00 0.00 46.40 4.24
4386 4545 4.411256 AAATATTGGCTGCCCATGAAAG 57.589 40.909 17.53 0.00 41.78 2.62
4452 4611 3.663025 CCCAAATTTGCTCGACCAAAAT 58.337 40.909 12.92 0.00 38.12 1.82
4495 4654 4.558226 AGTGGCTACATGAATCAGAACA 57.442 40.909 2.02 0.00 0.00 3.18
4565 4724 2.561858 GGATCGGAGGGAGTACATAACC 59.438 54.545 0.00 0.00 0.00 2.85
4567 4726 3.605726 TGGATCGGAGGGAGTACATAA 57.394 47.619 0.00 0.00 0.00 1.90
4615 4774 5.248870 AGTGTTGCAGTTTTGAACTAAGG 57.751 39.130 0.00 0.00 40.46 2.69
4632 4791 3.705051 TGTACTCCCTCCGATAAGTGTT 58.295 45.455 0.00 0.00 0.00 3.32
4658 4824 3.119884 TGAAAATCAACACCGCTATGCAG 60.120 43.478 0.00 0.00 0.00 4.41
4693 4859 4.271049 CCACAACAAACAACAACAACAACA 59.729 37.500 0.00 0.00 0.00 3.33
4694 4860 4.271291 ACCACAACAAACAACAACAACAAC 59.729 37.500 0.00 0.00 0.00 3.32
4695 4861 4.271049 CACCACAACAAACAACAACAACAA 59.729 37.500 0.00 0.00 0.00 2.83
4696 4862 3.804325 CACCACAACAAACAACAACAACA 59.196 39.130 0.00 0.00 0.00 3.33
4697 4863 3.804873 ACACCACAACAAACAACAACAAC 59.195 39.130 0.00 0.00 0.00 3.32
4698 4864 4.060038 ACACCACAACAAACAACAACAA 57.940 36.364 0.00 0.00 0.00 2.83
4699 4865 3.735237 ACACCACAACAAACAACAACA 57.265 38.095 0.00 0.00 0.00 3.33
4700 4866 4.051922 TCAACACCACAACAAACAACAAC 58.948 39.130 0.00 0.00 0.00 3.32
4701 4867 4.322080 TCAACACCACAACAAACAACAA 57.678 36.364 0.00 0.00 0.00 2.83
4702 4868 4.527509 ATCAACACCACAACAAACAACA 57.472 36.364 0.00 0.00 0.00 3.33
4703 4869 5.854431 AAATCAACACCACAACAAACAAC 57.146 34.783 0.00 0.00 0.00 3.32
4704 4870 5.991606 TGAAAATCAACACCACAACAAACAA 59.008 32.000 0.00 0.00 0.00 2.83
4705 4871 5.541845 TGAAAATCAACACCACAACAAACA 58.458 33.333 0.00 0.00 0.00 2.83
4706 4872 6.091986 ACATGAAAATCAACACCACAACAAAC 59.908 34.615 0.00 0.00 0.00 2.93
4707 4873 6.169094 ACATGAAAATCAACACCACAACAAA 58.831 32.000 0.00 0.00 0.00 2.83
4828 4995 1.481242 GGATTTGCCTTATCCCCAGGG 60.481 57.143 0.00 0.00 36.38 4.45
4903 5070 2.354074 CTGTTGCTTTGCCGGCAGTT 62.354 55.000 30.75 0.00 40.90 3.16
4915 5082 2.672307 GCAGCTGCCTCTGTTGCT 60.672 61.111 28.76 0.00 36.82 3.91
4916 5083 2.979197 CTGCAGCTGCCTCTGTTGC 61.979 63.158 34.64 9.13 41.18 4.17
4917 5084 0.677098 ATCTGCAGCTGCCTCTGTTG 60.677 55.000 34.64 15.60 41.18 3.33
4936 5106 3.550820 TGCACTTTTCTGTGGAGCTTTA 58.449 40.909 0.00 0.00 38.31 1.85
5026 5196 1.748122 CCTGTCAGCTGATGGGTGC 60.748 63.158 21.47 6.23 42.57 5.01
5169 5343 3.814005 AGACCACTAACAACTTGACGT 57.186 42.857 0.00 0.00 0.00 4.34
5299 5473 7.602265 TCTTCAAAAGCAAGGGCAAATATTTAC 59.398 33.333 0.00 0.00 44.61 2.01
5315 5489 3.221964 ACATGGCGATTCTTCAAAAGC 57.778 42.857 0.00 0.00 0.00 3.51
5408 5582 8.211629 AGGGATAGAACACAATTACAATAGGAC 58.788 37.037 0.00 0.00 0.00 3.85
5464 5638 6.755542 TTTGGGGAAAGATGGTAAACAAAT 57.244 33.333 0.00 0.00 0.00 2.32
5505 5679 4.112341 GCTTGCCTGGAGCTTGCG 62.112 66.667 0.00 0.00 44.23 4.85
5735 5913 3.136443 TGAGGGTTGACAACATCAGAAGT 59.864 43.478 19.58 0.00 38.99 3.01
5972 6166 4.201628 GCTCTATAGAAGTGCACAAACACG 60.202 45.833 21.04 1.64 45.45 4.49
6023 6217 6.424032 ACCAGATACGTCATAGCTATGGATA 58.576 40.000 29.02 19.67 34.50 2.59
6026 6220 6.499172 CATACCAGATACGTCATAGCTATGG 58.501 44.000 29.02 18.36 34.50 2.74
6074 6268 4.813161 CAGCTTACATATCAACCACCAGAG 59.187 45.833 0.00 0.00 0.00 3.35
6121 6315 8.851541 ATCAAATTGCACTTCCAAATATTGTT 57.148 26.923 0.00 0.00 0.00 2.83
6128 6322 8.034215 CCTAACATATCAAATTGCACTTCCAAA 58.966 33.333 0.00 0.00 0.00 3.28
6129 6323 7.178274 ACCTAACATATCAAATTGCACTTCCAA 59.822 33.333 0.00 0.00 0.00 3.53
6130 6324 6.663093 ACCTAACATATCAAATTGCACTTCCA 59.337 34.615 0.00 0.00 0.00 3.53
6131 6325 7.100458 ACCTAACATATCAAATTGCACTTCC 57.900 36.000 0.00 0.00 0.00 3.46
6132 6326 8.893727 ACTACCTAACATATCAAATTGCACTTC 58.106 33.333 0.00 0.00 0.00 3.01
6134 6328 8.807948 AACTACCTAACATATCAAATTGCACT 57.192 30.769 0.00 0.00 0.00 4.40
6159 6356 8.736244 AGCGCAGATATTCCTTAAAACTAAAAA 58.264 29.630 11.47 0.00 0.00 1.94
6237 6434 2.753452 CTGCAAGGAGACAATTGAGCAT 59.247 45.455 13.59 0.00 0.00 3.79
6297 6494 5.641209 GCAATAACTAGGGCACATCTAGATG 59.359 44.000 27.63 27.63 44.15 2.90
6298 6495 5.307976 TGCAATAACTAGGGCACATCTAGAT 59.692 40.000 0.00 0.00 38.02 1.98
6299 6496 4.653801 TGCAATAACTAGGGCACATCTAGA 59.346 41.667 0.00 0.00 38.02 2.43
6300 6497 4.960938 TGCAATAACTAGGGCACATCTAG 58.039 43.478 0.00 0.00 39.88 2.43
6302 6499 3.931907 TGCAATAACTAGGGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
6307 6504 3.931907 AGATGTGCAATAACTAGGGCA 57.068 42.857 0.00 0.00 0.00 5.36
6308 6505 5.237344 CACTTAGATGTGCAATAACTAGGGC 59.763 44.000 0.00 0.00 0.00 5.19
6309 6506 6.851222 CACTTAGATGTGCAATAACTAGGG 57.149 41.667 0.00 0.00 0.00 3.53
6321 6518 6.492007 AGTTTGATTGAGCACTTAGATGTG 57.508 37.500 0.00 0.00 40.62 3.21
6322 6519 7.615403 TCTAGTTTGATTGAGCACTTAGATGT 58.385 34.615 0.00 0.00 0.00 3.06
6323 6520 8.484641 TTCTAGTTTGATTGAGCACTTAGATG 57.515 34.615 0.00 0.00 0.00 2.90
6324 6521 9.160496 CTTTCTAGTTTGATTGAGCACTTAGAT 57.840 33.333 0.00 0.00 0.00 1.98
6325 6522 8.367911 TCTTTCTAGTTTGATTGAGCACTTAGA 58.632 33.333 0.00 0.00 0.00 2.10
6326 6523 8.539770 TCTTTCTAGTTTGATTGAGCACTTAG 57.460 34.615 0.00 0.00 0.00 2.18
6327 6524 8.902540 TTCTTTCTAGTTTGATTGAGCACTTA 57.097 30.769 0.00 0.00 0.00 2.24
6328 6525 7.807977 TTCTTTCTAGTTTGATTGAGCACTT 57.192 32.000 0.00 0.00 0.00 3.16
6329 6526 7.807977 TTTCTTTCTAGTTTGATTGAGCACT 57.192 32.000 0.00 0.00 0.00 4.40
6330 6527 8.856490 TTTTTCTTTCTAGTTTGATTGAGCAC 57.144 30.769 0.00 0.00 0.00 4.40
6331 6528 8.137437 CCTTTTTCTTTCTAGTTTGATTGAGCA 58.863 33.333 0.00 0.00 0.00 4.26
6332 6529 8.352942 TCCTTTTTCTTTCTAGTTTGATTGAGC 58.647 33.333 0.00 0.00 0.00 4.26
6360 6557 7.022979 GTGCAAGCATTTTCTTTTGTCTTTTT 58.977 30.769 0.00 0.00 0.00 1.94
6361 6558 6.149142 TGTGCAAGCATTTTCTTTTGTCTTTT 59.851 30.769 0.00 0.00 0.00 2.27
6362 6559 5.642919 TGTGCAAGCATTTTCTTTTGTCTTT 59.357 32.000 0.00 0.00 0.00 2.52
6363 6560 5.177326 TGTGCAAGCATTTTCTTTTGTCTT 58.823 33.333 0.00 0.00 0.00 3.01
6364 6561 4.757594 TGTGCAAGCATTTTCTTTTGTCT 58.242 34.783 0.00 0.00 0.00 3.41
6365 6562 5.467902 TTGTGCAAGCATTTTCTTTTGTC 57.532 34.783 0.00 0.00 0.00 3.18
6366 6563 5.876612 TTTGTGCAAGCATTTTCTTTTGT 57.123 30.435 0.00 0.00 0.00 2.83
6367 6564 6.721321 AGATTTGTGCAAGCATTTTCTTTTG 58.279 32.000 0.00 0.00 0.00 2.44
6368 6565 6.930667 AGATTTGTGCAAGCATTTTCTTTT 57.069 29.167 0.00 0.00 0.00 2.27
6369 6566 6.930667 AAGATTTGTGCAAGCATTTTCTTT 57.069 29.167 0.00 0.00 0.00 2.52
6370 6567 7.170320 CACTAAGATTTGTGCAAGCATTTTCTT 59.830 33.333 0.00 7.65 0.00 2.52
6371 6568 6.643770 CACTAAGATTTGTGCAAGCATTTTCT 59.356 34.615 0.00 0.00 0.00 2.52
6372 6569 6.421801 ACACTAAGATTTGTGCAAGCATTTTC 59.578 34.615 0.00 0.00 37.41 2.29
6373 6570 6.282930 ACACTAAGATTTGTGCAAGCATTTT 58.717 32.000 0.00 0.00 37.41 1.82
6374 6571 5.846203 ACACTAAGATTTGTGCAAGCATTT 58.154 33.333 0.00 0.00 37.41 2.32
6375 6572 5.458041 ACACTAAGATTTGTGCAAGCATT 57.542 34.783 0.00 0.00 37.41 3.56
6376 6573 6.573664 TTACACTAAGATTTGTGCAAGCAT 57.426 33.333 0.00 0.00 37.41 3.79
6377 6574 6.384258 TTTACACTAAGATTTGTGCAAGCA 57.616 33.333 7.00 0.00 37.41 3.91
6378 6575 7.594758 TGATTTTACACTAAGATTTGTGCAAGC 59.405 33.333 7.00 2.74 37.41 4.01
6379 6576 9.462174 TTGATTTTACACTAAGATTTGTGCAAG 57.538 29.630 7.00 0.00 37.41 4.01
6380 6577 9.979578 ATTGATTTTACACTAAGATTTGTGCAA 57.020 25.926 7.00 0.00 37.41 4.08
6381 6578 9.409312 CATTGATTTTACACTAAGATTTGTGCA 57.591 29.630 7.00 0.00 37.41 4.57
6382 6579 9.624697 TCATTGATTTTACACTAAGATTTGTGC 57.375 29.630 7.00 0.00 37.41 4.57
6400 6597 9.664332 GCACATCTAAGTCCTATATCATTGATT 57.336 33.333 4.14 0.00 0.00 2.57
6401 6598 7.978414 CGCACATCTAAGTCCTATATCATTGAT 59.022 37.037 4.28 4.28 0.00 2.57
6402 6599 7.176690 TCGCACATCTAAGTCCTATATCATTGA 59.823 37.037 0.00 0.00 0.00 2.57
6403 6600 7.315890 TCGCACATCTAAGTCCTATATCATTG 58.684 38.462 0.00 0.00 0.00 2.82
6404 6601 7.468141 TCGCACATCTAAGTCCTATATCATT 57.532 36.000 0.00 0.00 0.00 2.57
6405 6602 7.652524 ATCGCACATCTAAGTCCTATATCAT 57.347 36.000 0.00 0.00 0.00 2.45
6406 6603 7.829706 AGTATCGCACATCTAAGTCCTATATCA 59.170 37.037 0.00 0.00 0.00 2.15
6407 6604 8.215926 AGTATCGCACATCTAAGTCCTATATC 57.784 38.462 0.00 0.00 0.00 1.63
6408 6605 8.582657 AAGTATCGCACATCTAAGTCCTATAT 57.417 34.615 0.00 0.00 0.00 0.86
6409 6606 7.997773 AAGTATCGCACATCTAAGTCCTATA 57.002 36.000 0.00 0.00 0.00 1.31
6410 6607 6.902771 AAGTATCGCACATCTAAGTCCTAT 57.097 37.500 0.00 0.00 0.00 2.57
6411 6608 7.997773 ATAAGTATCGCACATCTAAGTCCTA 57.002 36.000 0.00 0.00 0.00 2.94
6412 6609 6.902771 ATAAGTATCGCACATCTAAGTCCT 57.097 37.500 0.00 0.00 0.00 3.85
6413 6610 6.748198 GCTATAAGTATCGCACATCTAAGTCC 59.252 42.308 0.00 0.00 0.00 3.85
6414 6611 7.306213 TGCTATAAGTATCGCACATCTAAGTC 58.694 38.462 0.00 0.00 30.64 3.01
6415 6612 7.215719 TGCTATAAGTATCGCACATCTAAGT 57.784 36.000 0.00 0.00 30.64 2.24
6424 6621 7.475840 CATCTAGATGTGCTATAAGTATCGCA 58.524 38.462 22.42 0.00 32.81 5.10
6425 6622 7.906611 CATCTAGATGTGCTATAAGTATCGC 57.093 40.000 22.42 0.00 34.23 4.58
6450 6647 5.698545 AAAACACAACAGTTTTGCTAAAGCA 59.301 32.000 0.00 0.00 46.63 3.91
6451 6648 5.778161 AAACACAACAGTTTTGCTAAAGC 57.222 34.783 0.00 0.00 38.49 3.51
6460 6657 9.495572 TTGGAAAATTAGAAAACACAACAGTTT 57.504 25.926 0.00 0.00 43.13 2.66
6461 6658 9.495572 TTTGGAAAATTAGAAAACACAACAGTT 57.504 25.926 0.00 0.00 0.00 3.16
6462 6659 9.665719 ATTTGGAAAATTAGAAAACACAACAGT 57.334 25.926 0.00 0.00 0.00 3.55
6511 6708 7.518188 TCTTCTTTGGGTTTAGAACATCTTCT 58.482 34.615 0.00 0.00 40.13 2.85
6613 6810 1.203162 TGGCCAACCTTTGATCACCAT 60.203 47.619 0.61 0.00 36.63 3.55
6657 6854 4.821805 TCCAAGGAATGACAAAACTGAGTC 59.178 41.667 0.00 0.00 35.37 3.36
6674 6871 2.552367 AGAAGGGTAGGTTCTCCAAGG 58.448 52.381 0.00 0.00 35.89 3.61
6675 6872 5.675538 CAATAGAAGGGTAGGTTCTCCAAG 58.324 45.833 0.00 0.00 35.78 3.61
6693 6891 7.395489 AGGCCTTTCTATATTTGATGGCAATAG 59.605 37.037 0.00 0.00 40.72 1.73
6743 6941 6.754675 TGTTAATTCATTCAATGCATGCAGAG 59.245 34.615 26.69 19.83 0.00 3.35
6826 7028 1.489230 GTGAATGGTACCCCTCGGAAT 59.511 52.381 10.07 0.00 0.00 3.01
6862 7064 4.502259 GCATTCGGAACTGAGGATCTACAT 60.502 45.833 0.00 0.00 34.92 2.29
6992 7195 7.047891 AGAACTGACAACTCTGTTAACATTCA 58.952 34.615 9.13 4.74 38.35 2.57
6993 7196 7.484035 AGAACTGACAACTCTGTTAACATTC 57.516 36.000 9.13 6.01 38.35 2.67
6994 7197 7.552687 TCAAGAACTGACAACTCTGTTAACATT 59.447 33.333 9.13 0.00 38.35 2.71
7068 7271 2.978156 TATCATCAGGGCCATTTCCC 57.022 50.000 6.18 0.00 46.93 3.97
7069 7272 6.628844 GCAATAATATCATCAGGGCCATTTCC 60.629 42.308 6.18 0.00 0.00 3.13
7070 7273 6.335777 GCAATAATATCATCAGGGCCATTTC 58.664 40.000 6.18 0.00 0.00 2.17
7140 7346 4.201970 CCACGGTTAAGAAAACTGAGCAAA 60.202 41.667 3.82 0.00 0.00 3.68
7142 7348 2.875933 CCACGGTTAAGAAAACTGAGCA 59.124 45.455 3.82 0.00 0.00 4.26
7149 7355 3.888583 ACTGGAACCACGGTTAAGAAAA 58.111 40.909 14.87 0.00 38.60 2.29
7150 7356 3.564053 ACTGGAACCACGGTTAAGAAA 57.436 42.857 14.87 0.00 38.60 2.52
7199 7439 3.882888 ACAGGTTTATTGTGGATATGCCG 59.117 43.478 0.00 0.00 40.66 5.69
7212 7452 6.152323 TCGTCTCTAAACAGCTACAGGTTTAT 59.848 38.462 7.37 0.00 38.41 1.40
7236 7478 3.051081 ACTGCTTCAGATCACTTGGTC 57.949 47.619 0.29 0.00 35.18 4.02
7240 7482 6.998802 AGTACTTAACTGCTTCAGATCACTT 58.001 36.000 0.29 0.00 36.93 3.16
7256 7498 8.766000 TGCGAATGAAAGATGTAAGTACTTAA 57.234 30.769 16.82 8.17 0.00 1.85
7257 7499 8.766000 TTGCGAATGAAAGATGTAAGTACTTA 57.234 30.769 11.38 11.38 0.00 2.24
7258 7500 7.667043 TTGCGAATGAAAGATGTAAGTACTT 57.333 32.000 13.68 13.68 0.00 2.24
7259 7501 7.667043 TTTGCGAATGAAAGATGTAAGTACT 57.333 32.000 0.00 0.00 0.00 2.73
7260 7502 8.722342 TTTTTGCGAATGAAAGATGTAAGTAC 57.278 30.769 0.00 0.00 0.00 2.73
7285 7527 8.722394 GCTCTACTAAAGATGCAAGTACTTTTT 58.278 33.333 5.07 6.43 35.79 1.94
7286 7528 7.878127 TGCTCTACTAAAGATGCAAGTACTTTT 59.122 33.333 5.07 0.00 36.24 2.27
7287 7529 7.386851 TGCTCTACTAAAGATGCAAGTACTTT 58.613 34.615 5.07 13.13 36.24 2.66
7288 7530 6.936279 TGCTCTACTAAAGATGCAAGTACTT 58.064 36.000 1.12 1.12 36.24 2.24
7289 7531 6.531503 TGCTCTACTAAAGATGCAAGTACT 57.468 37.500 0.00 0.00 36.24 2.73
7296 7538 5.747951 ATTGCTTGCTCTACTAAAGATGC 57.252 39.130 0.00 0.00 32.41 3.91
7387 7632 5.906772 AGGAGTTCCAAAAGGAAGAAGTA 57.093 39.130 0.28 0.00 38.89 2.24
7399 7644 2.306847 GTCAGGCAAAAGGAGTTCCAA 58.693 47.619 0.28 0.00 38.89 3.53
7404 7649 0.538287 GCAGGTCAGGCAAAAGGAGT 60.538 55.000 0.00 0.00 0.00 3.85
7432 7677 2.027561 TCCAAACAATACCACGGAGAGG 60.028 50.000 0.00 0.00 46.17 3.69
7484 7734 2.700897 CAAGGACTCGATGTATTCCCCT 59.299 50.000 0.00 0.00 0.00 4.79
7485 7735 2.698797 TCAAGGACTCGATGTATTCCCC 59.301 50.000 0.00 0.00 0.00 4.81
7497 7747 4.944317 CCAAAACCTAGGAATCAAGGACTC 59.056 45.833 17.98 0.00 36.66 3.36
7499 7749 3.444034 GCCAAAACCTAGGAATCAAGGAC 59.556 47.826 17.98 2.80 36.66 3.85
7502 7752 2.423538 CGGCCAAAACCTAGGAATCAAG 59.576 50.000 17.98 0.27 0.00 3.02
7535 7785 4.111375 TCAGCTTCTAGGCTAAACTTCG 57.889 45.455 0.00 0.00 41.00 3.79
7561 7811 2.030805 GGCAAAAGATCGCAACTGAACT 60.031 45.455 0.00 0.00 0.00 3.01
7562 7812 2.287547 TGGCAAAAGATCGCAACTGAAC 60.288 45.455 0.00 0.00 0.00 3.18
7563 7813 1.952990 TGGCAAAAGATCGCAACTGAA 59.047 42.857 0.00 0.00 0.00 3.02
7603 7876 0.676782 AGACATACCAAAGCACGCCC 60.677 55.000 0.00 0.00 0.00 6.13
7607 7880 5.221244 ACCAAAAGAAGACATACCAAAGCAC 60.221 40.000 0.00 0.00 0.00 4.40
7665 7939 2.863704 GCACCATGTCAAGAGCAAAACC 60.864 50.000 0.00 0.00 0.00 3.27
7666 7940 2.397549 GCACCATGTCAAGAGCAAAAC 58.602 47.619 0.00 0.00 0.00 2.43
7667 7941 1.340889 GGCACCATGTCAAGAGCAAAA 59.659 47.619 0.00 0.00 0.00 2.44
7695 7969 6.074302 CGTATGTGAATATTTTCTCCCAGACG 60.074 42.308 12.32 12.32 35.87 4.18
7751 8026 0.804989 AGAGGTTGCTATTTGCGTGC 59.195 50.000 0.00 0.00 46.63 5.34
7755 8030 1.176527 TGCCAGAGGTTGCTATTTGC 58.823 50.000 0.00 0.00 43.25 3.68
7798 8073 0.980423 GGGTCAGCTCCAGTTCTTCT 59.020 55.000 0.00 0.00 0.00 2.85
7799 8074 0.980423 AGGGTCAGCTCCAGTTCTTC 59.020 55.000 0.00 0.00 0.00 2.87
7800 8075 0.980423 GAGGGTCAGCTCCAGTTCTT 59.020 55.000 0.00 0.00 0.00 2.52
7820 8095 5.892348 AGAAGGGTACATTTTTCAGGTCAT 58.108 37.500 0.00 0.00 0.00 3.06
7838 8113 6.830324 TGGATACCATGATTTCTCAAAGAAGG 59.170 38.462 0.00 0.00 35.37 3.46
7841 8116 7.503566 GGAATGGATACCATGATTTCTCAAAGA 59.496 37.037 3.97 0.00 44.40 2.52
7842 8117 7.286087 TGGAATGGATACCATGATTTCTCAAAG 59.714 37.037 3.97 0.00 44.40 2.77
7843 8118 7.124721 TGGAATGGATACCATGATTTCTCAAA 58.875 34.615 3.97 0.00 44.40 2.69
7844 8119 6.671605 TGGAATGGATACCATGATTTCTCAA 58.328 36.000 3.97 0.00 44.40 3.02
7845 8120 6.264771 TGGAATGGATACCATGATTTCTCA 57.735 37.500 3.97 0.00 44.40 3.27
7846 8121 6.293626 CGTTGGAATGGATACCATGATTTCTC 60.294 42.308 3.97 0.00 44.40 2.87
7847 8122 5.532406 CGTTGGAATGGATACCATGATTTCT 59.468 40.000 3.97 0.00 44.40 2.52
7848 8123 5.530915 TCGTTGGAATGGATACCATGATTTC 59.469 40.000 3.97 0.00 44.40 2.17
7851 8126 4.705110 TCGTTGGAATGGATACCATGAT 57.295 40.909 3.97 0.00 44.40 2.45
7863 8138 3.744426 CGTAAAGTGGAGTTCGTTGGAAT 59.256 43.478 0.00 0.00 34.05 3.01
7864 8139 3.125316 CGTAAAGTGGAGTTCGTTGGAA 58.875 45.455 0.00 0.00 0.00 3.53
7871 8146 8.644318 ATGTACATATTCGTAAAGTGGAGTTC 57.356 34.615 6.56 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.