Multiple sequence alignment - TraesCS3A01G342500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G342500 chr3A 100.000 4056 0 0 1 4056 589534662 589538717 0.000000e+00 7491.0
1 TraesCS3A01G342500 chr3D 90.989 2497 155 32 1 2480 448263449 448265892 0.000000e+00 3301.0
2 TraesCS3A01G342500 chr3D 89.238 669 34 17 2837 3474 448266181 448266842 0.000000e+00 802.0
3 TraesCS3A01G342500 chr3D 91.830 306 15 2 2520 2817 448265891 448266194 6.270000e-113 418.0
4 TraesCS3A01G342500 chr3D 93.220 59 3 1 2463 2521 133521078 133521021 7.220000e-13 86.1
5 TraesCS3A01G342500 chr3D 91.525 59 4 1 3908 3966 448267530 448267587 3.360000e-11 80.5
6 TraesCS3A01G342500 chr3D 86.111 72 8 2 2463 2533 371366882 371366812 4.350000e-10 76.8
7 TraesCS3A01G342500 chr3B 89.520 2376 147 32 137 2480 587963900 587966205 0.000000e+00 2915.0
8 TraesCS3A01G342500 chr3B 96.162 495 15 1 2837 3327 587966407 587966901 0.000000e+00 806.0
9 TraesCS3A01G342500 chr3B 96.644 149 5 0 2602 2750 587966225 587966373 8.710000e-62 248.0
10 TraesCS3A01G342500 chr3B 100.000 43 0 0 2775 2817 587966378 587966420 3.360000e-11 80.5
11 TraesCS3A01G342500 chr3B 89.231 65 5 2 3908 3971 587988138 587988201 3.360000e-11 80.5
12 TraesCS3A01G342500 chr3B 89.831 59 5 1 2463 2521 530257496 530257553 1.560000e-09 75.0
13 TraesCS3A01G342500 chr1A 88.435 147 17 0 2910 3056 495706893 495706747 1.160000e-40 178.0
14 TraesCS3A01G342500 chr1A 89.831 59 5 1 2463 2521 527083958 527084015 1.560000e-09 75.0
15 TraesCS3A01G342500 chr1B 87.075 147 19 0 2910 3056 534669828 534669682 2.510000e-37 167.0
16 TraesCS3A01G342500 chr1B 90.476 63 4 2 2463 2524 154165120 154165059 9.340000e-12 82.4
17 TraesCS3A01G342500 chr1D 86.395 147 20 0 2910 3056 398980323 398980177 1.170000e-35 161.0
18 TraesCS3A01G342500 chr4B 90.625 64 4 2 2459 2521 643804230 643804292 2.600000e-12 84.2
19 TraesCS3A01G342500 chr2B 90.625 64 5 1 2463 2526 41963910 41963848 2.600000e-12 84.2
20 TraesCS3A01G342500 chr7D 90.476 63 5 1 2477 2539 474349106 474349045 9.340000e-12 82.4
21 TraesCS3A01G342500 chr2D 84.146 82 8 5 2464 2544 360737752 360737675 1.560000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G342500 chr3A 589534662 589538717 4055 False 7491.000 7491 100.0000 1 4056 1 chr3A.!!$F1 4055
1 TraesCS3A01G342500 chr3D 448263449 448267587 4138 False 1150.375 3301 90.8955 1 3966 4 chr3D.!!$F1 3965
2 TraesCS3A01G342500 chr3B 587963900 587966901 3001 False 1012.375 2915 95.5815 137 3327 4 chr3B.!!$F3 3190

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 254 0.324614 TGTCGATTGGATGTGTGCCT 59.675 50.000 0.00 0.00 0.00 4.75 F
286 291 0.390340 GTCAGGCTCGATCTGTTGCA 60.390 55.000 13.36 0.00 34.15 4.08 F
563 570 0.825010 CTGGTGGGATATGCCTTGCC 60.825 60.000 15.02 13.59 36.66 4.52 F
597 604 1.168714 GGCAGCCTGTTGTCTAAAGG 58.831 55.000 3.29 0.00 0.00 3.11 F
1233 1245 1.492176 CAGGGCTATGTCCATCAAGGT 59.508 52.381 0.00 0.00 39.02 3.50 F
2598 2642 1.130613 CTAGAACGTTGCTGCGTGC 59.869 57.895 5.00 5.34 45.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1136 1148 0.604780 AGCTCACATGACCACAGCAC 60.605 55.000 0.00 0.0 0.0 4.40 R
1588 1611 1.200020 GTAGTGGTTGTTGATGGCTGC 59.800 52.381 0.00 0.0 0.0 5.25 R
2040 2067 3.365820 CGATTTCTGCAAACAAATGAGGC 59.634 43.478 3.32 0.0 0.0 4.70 R
2594 2638 1.238439 AAAGGTCATGACAAGGCACG 58.762 50.000 26.47 0.0 0.0 5.34 R
2932 2984 0.900421 GGTTAGGGTCGGTAAGCAGT 59.100 55.000 0.00 0.0 0.0 4.40 R
3590 3809 0.035439 GCTGAAATGGAACGGAGGGA 60.035 55.000 0.00 0.0 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.234730 CCCCTCCCTCGATTCCGG 61.235 72.222 0.00 0.00 36.24 5.14
39 40 2.658593 CAGATCGGCGCCGGTAAG 60.659 66.667 44.95 30.94 40.25 2.34
40 41 4.587189 AGATCGGCGCCGGTAAGC 62.587 66.667 44.95 30.50 40.25 3.09
88 89 1.650314 CCCGGCCTTCGCGTAATTTT 61.650 55.000 5.77 0.00 37.59 1.82
110 114 3.661911 CAATTCCGTTGGCCGTGA 58.338 55.556 0.00 0.00 34.06 4.35
113 117 1.234615 AATTCCGTTGGCCGTGACTG 61.235 55.000 0.00 0.00 33.66 3.51
119 123 0.605319 GTTGGCCGTGACTGGATTGA 60.605 55.000 0.00 0.00 0.00 2.57
121 125 1.199615 TGGCCGTGACTGGATTGATA 58.800 50.000 0.00 0.00 0.00 2.15
171 176 3.081409 GGCGGGGCCTCTCTTGTA 61.081 66.667 0.00 0.00 46.69 2.41
175 180 1.705873 CGGGGCCTCTCTTGTAGTAT 58.294 55.000 0.00 0.00 0.00 2.12
223 228 4.444838 CCGGTGGCGATTCGTCCA 62.445 66.667 15.22 15.22 32.67 4.02
238 243 1.143838 TCCATCGGCCTGTCGATTG 59.856 57.895 3.54 1.23 46.23 2.67
243 248 1.153369 CGGCCTGTCGATTGGATGT 60.153 57.895 0.00 0.00 0.00 3.06
249 254 0.324614 TGTCGATTGGATGTGTGCCT 59.675 50.000 0.00 0.00 0.00 4.75
272 277 1.134818 TCAATCCGTTGGATCGTCAGG 60.135 52.381 0.00 0.00 42.27 3.86
286 291 0.390340 GTCAGGCTCGATCTGTTGCA 60.390 55.000 13.36 0.00 34.15 4.08
314 319 5.356190 TGTGATTCGTTAGGATCGTCTAGTT 59.644 40.000 0.00 0.00 0.00 2.24
340 345 2.618053 CTGTCGAGGCGAGGTATTTTT 58.382 47.619 0.00 0.00 36.23 1.94
346 351 3.424433 CGAGGCGAGGTATTTTTGTTGTC 60.424 47.826 0.00 0.00 0.00 3.18
350 355 3.254903 GCGAGGTATTTTTGTTGTCCCTT 59.745 43.478 0.00 0.00 0.00 3.95
364 369 2.147958 GTCCCTTTTATCGTGTGTGCA 58.852 47.619 0.00 0.00 0.00 4.57
483 490 4.700365 TGCGTGGAGAGCGTCGTG 62.700 66.667 0.00 0.00 37.44 4.35
512 519 3.988976 AGCCAGTGATCTGTTGTATGT 57.011 42.857 0.00 0.00 39.82 2.29
513 520 3.866651 AGCCAGTGATCTGTTGTATGTC 58.133 45.455 0.00 0.00 39.82 3.06
563 570 0.825010 CTGGTGGGATATGCCTTGCC 60.825 60.000 15.02 13.59 36.66 4.52
587 594 2.292828 AATGTAGTTTGGCAGCCTGT 57.707 45.000 14.15 0.00 0.00 4.00
594 601 1.953686 GTTTGGCAGCCTGTTGTCTAA 59.046 47.619 14.15 0.00 0.00 2.10
597 604 1.168714 GGCAGCCTGTTGTCTAAAGG 58.831 55.000 3.29 0.00 0.00 3.11
623 631 9.422196 GTCGTTATCTGTTAATGCTAATTTGAC 57.578 33.333 0.00 0.00 0.00 3.18
636 644 9.723601 AATGCTAATTTGACAACCACATTATTT 57.276 25.926 0.00 0.00 29.86 1.40
721 729 9.308318 GAAATAACTTGTTGTGTTGGTGTAATT 57.692 29.630 0.00 0.00 0.00 1.40
726 734 4.663166 TGTTGTGTTGGTGTAATTGAACG 58.337 39.130 0.00 0.00 0.00 3.95
761 769 5.891551 GGTTACCACCCAATCATTACTTGAT 59.108 40.000 0.00 0.00 41.09 2.57
762 770 6.039382 GGTTACCACCCAATCATTACTTGATC 59.961 42.308 0.00 0.00 39.59 2.92
765 773 4.881273 CCACCCAATCATTACTTGATCGAA 59.119 41.667 0.00 0.00 44.51 3.71
792 800 7.414208 GCTTTATGTTCTAGGTTACTTTGGAGC 60.414 40.741 0.00 0.00 0.00 4.70
803 811 7.732996 AGGTTACTTTGGAGCAATATATACGT 58.267 34.615 0.00 0.00 0.00 3.57
860 868 4.546829 ACTTCGAGGCAATAAACCTGTA 57.453 40.909 0.00 0.00 37.77 2.74
871 879 7.453439 AGGCAATAAACCTGTATTGTTTTACCT 59.547 33.333 6.76 2.49 41.56 3.08
872 880 8.092068 GGCAATAAACCTGTATTGTTTTACCTT 58.908 33.333 6.76 0.00 41.56 3.50
1087 1096 2.352225 GCAGGTACGAGCCAGATCTATG 60.352 54.545 0.00 0.00 0.00 2.23
1116 1125 1.860676 TGACTGTTAGCCACGTTGTC 58.139 50.000 0.00 0.00 0.00 3.18
1129 1138 2.069273 ACGTTGTCTGCATCTTAGCAC 58.931 47.619 0.00 0.00 40.11 4.40
1136 1148 5.295152 TGTCTGCATCTTAGCACTGATATG 58.705 41.667 0.00 0.00 40.11 1.78
1153 1165 1.817357 ATGTGCTGTGGTCATGTGAG 58.183 50.000 0.00 0.00 0.00 3.51
1172 1184 5.140177 GTGAGCTTTCAACTTTGTGTATCG 58.860 41.667 0.00 0.00 0.00 2.92
1173 1185 4.814234 TGAGCTTTCAACTTTGTGTATCGT 59.186 37.500 0.00 0.00 0.00 3.73
1174 1186 5.986741 TGAGCTTTCAACTTTGTGTATCGTA 59.013 36.000 0.00 0.00 0.00 3.43
1175 1187 6.480651 TGAGCTTTCAACTTTGTGTATCGTAA 59.519 34.615 0.00 0.00 0.00 3.18
1176 1188 7.172532 TGAGCTTTCAACTTTGTGTATCGTAAT 59.827 33.333 0.00 0.00 0.00 1.89
1177 1189 7.871853 AGCTTTCAACTTTGTGTATCGTAATT 58.128 30.769 0.00 0.00 0.00 1.40
1178 1190 8.015658 AGCTTTCAACTTTGTGTATCGTAATTC 58.984 33.333 0.00 0.00 0.00 2.17
1179 1191 7.801315 GCTTTCAACTTTGTGTATCGTAATTCA 59.199 33.333 0.00 0.00 0.00 2.57
1180 1192 8.996988 TTTCAACTTTGTGTATCGTAATTCAC 57.003 30.769 0.00 0.00 34.68 3.18
1181 1193 7.124347 TCAACTTTGTGTATCGTAATTCACC 57.876 36.000 0.00 0.00 33.53 4.02
1182 1194 6.706716 TCAACTTTGTGTATCGTAATTCACCA 59.293 34.615 0.00 0.00 33.53 4.17
1233 1245 1.492176 CAGGGCTATGTCCATCAAGGT 59.508 52.381 0.00 0.00 39.02 3.50
1264 1276 7.815840 TTAGCAGGCTATTTATTATGCACAA 57.184 32.000 1.24 0.00 36.15 3.33
1299 1311 8.985315 ATATCCTTGCTGTCAATTATTTCTGA 57.015 30.769 0.00 0.00 0.00 3.27
1307 1319 4.391830 TGTCAATTATTTCTGAGCGTGACC 59.608 41.667 0.00 0.00 34.58 4.02
1314 1326 3.678056 TTCTGAGCGTGACCATAACTT 57.322 42.857 0.00 0.00 0.00 2.66
1338 1350 5.056480 CACTGGAACTATTTATGGCATCGA 58.944 41.667 1.65 0.00 0.00 3.59
1349 1361 3.507162 ATGGCATCGACCCATTGATAA 57.493 42.857 12.42 0.00 40.06 1.75
1384 1402 8.624367 TTTCATTGAATGGATTTCATTTTGCT 57.376 26.923 5.20 0.00 45.36 3.91
1394 1412 6.489700 TGGATTTCATTTTGCTGAGTCACTTA 59.510 34.615 0.00 0.00 0.00 2.24
1407 1425 5.500234 TGAGTCACTTATCCAGGAAATTGG 58.500 41.667 0.00 0.00 39.70 3.16
1440 1458 2.975851 CAGTTTCATTCGCTGTTCTTGC 59.024 45.455 0.00 0.00 0.00 4.01
1458 1476 5.569355 TCTTGCCCAAAGAGAATGTATCAA 58.431 37.500 0.00 0.00 40.09 2.57
1463 1481 9.812347 TTGCCCAAAGAGAATGTATCAATATAT 57.188 29.630 0.00 0.00 0.00 0.86
1514 1533 4.941263 TGCGGTTGACTAGCTAAATTGATT 59.059 37.500 0.00 0.00 0.00 2.57
1685 1708 2.875296 ACTATTCCCTTGCTTGCACAA 58.125 42.857 0.00 0.00 0.00 3.33
1687 1710 3.834231 ACTATTCCCTTGCTTGCACAAAT 59.166 39.130 0.00 0.00 0.00 2.32
1947 1974 4.588951 TGTCAAACTGTCAGTATGTCTCCT 59.411 41.667 5.77 0.00 37.40 3.69
1975 2002 6.016213 TCATGTTCCATTGATGTTTCAGTG 57.984 37.500 0.00 0.00 38.83 3.66
1978 2005 5.830912 TGTTCCATTGATGTTTCAGTGTTC 58.169 37.500 0.00 0.00 37.77 3.18
1980 2007 4.384940 TCCATTGATGTTTCAGTGTTCGA 58.615 39.130 0.00 0.00 37.77 3.71
1983 2010 5.327091 CATTGATGTTTCAGTGTTCGATCC 58.673 41.667 0.00 0.00 35.48 3.36
2028 2055 9.459640 CTGCATTTTGATATTAAGGATCAACTG 57.540 33.333 12.77 13.35 41.76 3.16
2041 2068 7.559590 AAGGATCAACTGTATCTTGTTATGC 57.440 36.000 0.00 0.00 0.00 3.14
2053 2080 8.028354 TGTATCTTGTTATGCCTCATTTGTTTG 58.972 33.333 0.00 0.00 0.00 2.93
2112 2148 8.953368 AAAGAAAAATTCTGTTGCTGAATCTT 57.047 26.923 0.00 0.00 40.59 2.40
2115 2151 9.852091 AGAAAAATTCTGTTGCTGAATCTTATC 57.148 29.630 2.58 1.29 38.91 1.75
2155 2192 8.950210 ACATTCTATGATAGGTTCAACTTTGTG 58.050 33.333 0.00 0.00 38.03 3.33
2191 2228 7.995463 TGTTGTTTTTAATCTTCCCTTTTCG 57.005 32.000 0.00 0.00 0.00 3.46
2363 2400 7.093509 ACAACAATTCAGTCCTTTACACCTTTT 60.094 33.333 0.00 0.00 0.00 2.27
2494 2538 8.804688 AATCTCAACTATAGTGATCTAAACGC 57.195 34.615 6.06 0.00 0.00 4.84
2495 2539 7.569639 TCTCAACTATAGTGATCTAAACGCT 57.430 36.000 6.06 0.00 0.00 5.07
2496 2540 7.640852 TCTCAACTATAGTGATCTAAACGCTC 58.359 38.462 6.06 0.00 0.00 5.03
2497 2541 7.499563 TCTCAACTATAGTGATCTAAACGCTCT 59.500 37.037 6.06 0.00 0.00 4.09
2498 2542 7.997482 TCAACTATAGTGATCTAAACGCTCTT 58.003 34.615 6.06 0.00 0.00 2.85
2499 2543 9.117183 TCAACTATAGTGATCTAAACGCTCTTA 57.883 33.333 6.06 0.00 0.00 2.10
2500 2544 9.900710 CAACTATAGTGATCTAAACGCTCTTAT 57.099 33.333 6.06 0.00 0.00 1.73
2512 2556 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2513 2557 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
2514 2558 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2515 2559 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
2516 2560 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
2517 2561 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
2518 2562 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
2519 2563 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
2520 2564 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
2521 2565 9.425248 TCTTATATTTCTTTACGGAGGGAGTAA 57.575 33.333 0.00 0.00 32.84 2.24
2539 2583 7.451255 AGGGAGTAAATGTTTGATGTGATTTGA 59.549 33.333 0.00 0.00 0.00 2.69
2545 2589 5.045668 TGTTTGATGTGATTTGATGGACG 57.954 39.130 0.00 0.00 0.00 4.79
2586 2630 4.518970 TGTTTTGCCATCTGGTTCTAGAAC 59.481 41.667 24.73 24.73 40.45 3.01
2589 2633 2.301870 TGCCATCTGGTTCTAGAACGTT 59.698 45.455 25.44 0.00 42.02 3.99
2594 2638 1.461127 CTGGTTCTAGAACGTTGCTGC 59.539 52.381 25.44 12.72 42.02 5.25
2598 2642 1.130613 CTAGAACGTTGCTGCGTGC 59.869 57.895 5.00 5.34 45.00 5.34
2773 2825 7.231467 ACTGTACAGTTGGGATAAAAACATCT 58.769 34.615 22.95 0.00 38.83 2.90
2814 2866 8.280084 TGAGGTCTAGTAATCTACAGTTACCAT 58.720 37.037 0.00 0.00 33.55 3.55
2815 2867 9.134055 GAGGTCTAGTAATCTACAGTTACCATT 57.866 37.037 0.00 0.00 33.55 3.16
2816 2868 9.490083 AGGTCTAGTAATCTACAGTTACCATTT 57.510 33.333 0.00 0.00 33.55 2.32
2901 2953 6.438108 TGCACTACTAACTCCCAGTAATGTTA 59.562 38.462 0.00 0.00 30.39 2.41
2932 2984 2.816087 GGTTCTGCTTTCAATCTGCTCA 59.184 45.455 0.00 0.00 0.00 4.26
3010 3062 1.101331 AGACGGATCGGTCCAAGTAC 58.899 55.000 24.98 0.58 45.37 2.73
3057 3109 4.008330 CAGAAGTATGCCATGGGATGATC 58.992 47.826 27.58 20.50 0.00 2.92
3153 3205 9.435688 GGCCATTATTTTCTTTGATTACTTGTT 57.564 29.630 0.00 0.00 0.00 2.83
3209 3261 3.707179 CGTCGTAGTCAAAACATCAACG 58.293 45.455 0.00 0.00 0.00 4.10
3262 3314 7.886338 TGACATATGCTTCTCGTGATAACTAT 58.114 34.615 1.58 0.00 0.00 2.12
3318 3374 2.294791 CCGTGGCTGGAAATGTTTGTTA 59.705 45.455 0.00 0.00 0.00 2.41
3323 3379 3.679502 GGCTGGAAATGTTTGTTATGTGC 59.320 43.478 0.00 0.00 0.00 4.57
3332 3396 3.181471 TGTTTGTTATGTGCCCACTTTGG 60.181 43.478 0.00 0.00 37.25 3.28
3355 3441 2.037772 TGCTTTTGTCTCCTCTCTGGTC 59.962 50.000 0.00 0.00 37.07 4.02
3372 3458 5.664457 TCTGGTCATGTTACTGCTCTATTG 58.336 41.667 0.00 0.00 0.00 1.90
3378 3465 6.149474 GTCATGTTACTGCTCTATTGTTGGTT 59.851 38.462 0.00 0.00 0.00 3.67
3382 3469 2.301870 ACTGCTCTATTGTTGGTTCCGA 59.698 45.455 0.00 0.00 0.00 4.55
3394 3481 1.349688 TGGTTCCGAATTGGCTGTAGT 59.650 47.619 0.00 0.00 37.80 2.73
3395 3482 1.737793 GGTTCCGAATTGGCTGTAGTG 59.262 52.381 0.00 0.00 37.80 2.74
3396 3483 2.423577 GTTCCGAATTGGCTGTAGTGT 58.576 47.619 0.00 0.00 37.80 3.55
3397 3484 2.093306 TCCGAATTGGCTGTAGTGTG 57.907 50.000 0.00 0.00 37.80 3.82
3398 3485 1.621317 TCCGAATTGGCTGTAGTGTGA 59.379 47.619 0.00 0.00 37.80 3.58
3399 3486 2.037902 TCCGAATTGGCTGTAGTGTGAA 59.962 45.455 0.00 0.00 37.80 3.18
3400 3487 2.159627 CCGAATTGGCTGTAGTGTGAAC 59.840 50.000 0.00 0.00 0.00 3.18
3401 3488 3.067106 CGAATTGGCTGTAGTGTGAACT 58.933 45.455 0.00 0.00 0.00 3.01
3402 3489 3.498397 CGAATTGGCTGTAGTGTGAACTT 59.502 43.478 0.00 0.00 0.00 2.66
3403 3490 4.688879 CGAATTGGCTGTAGTGTGAACTTA 59.311 41.667 0.00 0.00 0.00 2.24
3418 3505 5.709631 TGTGAACTTAGGCATCAGCAAAATA 59.290 36.000 0.00 0.00 44.61 1.40
3422 3509 7.609918 TGAACTTAGGCATCAGCAAAATACTAA 59.390 33.333 0.00 0.00 44.61 2.24
3423 3510 7.559590 ACTTAGGCATCAGCAAAATACTAAG 57.440 36.000 0.00 0.00 44.61 2.18
3425 3512 7.829211 ACTTAGGCATCAGCAAAATACTAAGAA 59.171 33.333 16.72 0.00 44.61 2.52
3426 3513 8.574251 TTAGGCATCAGCAAAATACTAAGAAA 57.426 30.769 0.00 0.00 44.61 2.52
3427 3514 7.093322 AGGCATCAGCAAAATACTAAGAAAG 57.907 36.000 0.00 0.00 44.61 2.62
3428 3515 6.886459 AGGCATCAGCAAAATACTAAGAAAGA 59.114 34.615 0.00 0.00 44.61 2.52
3429 3516 7.559170 AGGCATCAGCAAAATACTAAGAAAGAT 59.441 33.333 0.00 0.00 44.61 2.40
3431 3518 7.859875 GCATCAGCAAAATACTAAGAAAGATCC 59.140 37.037 0.00 0.00 41.58 3.36
3432 3519 9.118300 CATCAGCAAAATACTAAGAAAGATCCT 57.882 33.333 0.00 0.00 0.00 3.24
3434 3521 8.321353 TCAGCAAAATACTAAGAAAGATCCTGA 58.679 33.333 0.00 0.00 0.00 3.86
3441 3528 6.245890 ACTAAGAAAGATCCTGATTCTGGG 57.754 41.667 9.46 0.54 33.86 4.45
3446 3533 2.995746 AGATCCTGATTCTGGGGCATA 58.004 47.619 9.46 0.00 0.00 3.14
3448 3535 2.196742 TCCTGATTCTGGGGCATACT 57.803 50.000 9.46 0.00 0.00 2.12
3452 3539 4.026052 CCTGATTCTGGGGCATACTTTTT 58.974 43.478 1.73 0.00 0.00 1.94
3456 3543 7.671398 CCTGATTCTGGGGCATACTTTTTATAT 59.329 37.037 1.73 0.00 0.00 0.86
3464 3551 9.292195 TGGGGCATACTTTTTATATAAGTTAGC 57.708 33.333 6.19 9.48 37.12 3.09
3515 3679 6.454583 CCATTTGTGAATCGCATGAAAATGAC 60.455 38.462 16.18 0.00 37.11 3.06
3521 3685 2.155279 TCGCATGAAAATGACGGGAAA 58.845 42.857 0.00 0.00 0.00 3.13
3524 3743 2.231235 GCATGAAAATGACGGGAAAGGT 59.769 45.455 0.00 0.00 0.00 3.50
3542 3761 7.336176 GGGAAAGGTAAGGTCACAAAGTTATAG 59.664 40.741 0.00 0.00 0.00 1.31
3543 3762 7.148289 GGAAAGGTAAGGTCACAAAGTTATAGC 60.148 40.741 0.00 0.00 0.00 2.97
3544 3763 6.622427 AGGTAAGGTCACAAAGTTATAGCT 57.378 37.500 0.00 0.00 0.00 3.32
3545 3764 7.017319 AGGTAAGGTCACAAAGTTATAGCTT 57.983 36.000 0.00 0.00 0.00 3.74
3547 3766 6.877322 GGTAAGGTCACAAAGTTATAGCTTCA 59.123 38.462 1.99 0.00 0.00 3.02
3548 3767 7.389607 GGTAAGGTCACAAAGTTATAGCTTCAA 59.610 37.037 1.99 0.00 0.00 2.69
3549 3768 7.817418 AAGGTCACAAAGTTATAGCTTCAAA 57.183 32.000 1.99 0.00 0.00 2.69
3550 3769 7.817418 AGGTCACAAAGTTATAGCTTCAAAA 57.183 32.000 1.99 0.00 0.00 2.44
3551 3770 7.649057 AGGTCACAAAGTTATAGCTTCAAAAC 58.351 34.615 1.99 0.55 0.00 2.43
3552 3771 7.502561 AGGTCACAAAGTTATAGCTTCAAAACT 59.497 33.333 1.99 0.00 33.72 2.66
3553 3772 8.135529 GGTCACAAAGTTATAGCTTCAAAACTT 58.864 33.333 1.99 0.37 42.40 2.66
3557 3776 9.869757 ACAAAGTTATAGCTTCAAAACTTTTGT 57.130 25.926 18.01 16.40 45.22 2.83
3560 3779 9.678941 AAGTTATAGCTTCAAAACTTTTGTAGC 57.321 29.630 26.49 26.49 38.65 3.58
3562 3781 8.902735 GTTATAGCTTCAAAACTTTTGTAGCAC 58.097 33.333 31.23 22.32 42.72 4.40
3564 3783 5.582550 AGCTTCAAAACTTTTGTAGCACTC 58.417 37.500 31.23 14.07 42.72 3.51
3565 3784 5.358160 AGCTTCAAAACTTTTGTAGCACTCT 59.642 36.000 31.23 17.65 42.72 3.24
3568 3787 5.890334 TCAAAACTTTTGTAGCACTCTTGG 58.110 37.500 12.88 0.00 0.00 3.61
3569 3788 3.990318 AACTTTTGTAGCACTCTTGGC 57.010 42.857 0.00 0.00 0.00 4.52
3570 3789 2.230660 ACTTTTGTAGCACTCTTGGCC 58.769 47.619 0.00 0.00 0.00 5.36
3571 3790 1.197721 CTTTTGTAGCACTCTTGGCCG 59.802 52.381 0.00 0.00 0.00 6.13
3573 3792 0.037326 TTGTAGCACTCTTGGCCGAG 60.037 55.000 14.59 14.59 37.07 4.63
3575 3794 1.609501 TAGCACTCTTGGCCGAGGT 60.610 57.895 20.46 13.57 35.33 3.85
3576 3795 1.605058 TAGCACTCTTGGCCGAGGTC 61.605 60.000 20.46 10.36 35.33 3.85
3577 3796 3.059982 CACTCTTGGCCGAGGTCA 58.940 61.111 20.46 0.00 35.33 4.02
3578 3797 1.374758 CACTCTTGGCCGAGGTCAC 60.375 63.158 20.46 0.00 35.33 3.67
3579 3798 1.837051 ACTCTTGGCCGAGGTCACA 60.837 57.895 20.46 0.00 35.33 3.58
3581 3800 0.250295 CTCTTGGCCGAGGTCACAAA 60.250 55.000 20.46 0.00 0.00 2.83
3582 3801 0.250295 TCTTGGCCGAGGTCACAAAG 60.250 55.000 20.46 3.70 0.00 2.77
3584 3803 0.106918 TTGGCCGAGGTCACAAAGTT 60.107 50.000 0.00 0.00 0.00 2.66
3585 3804 0.106918 TGGCCGAGGTCACAAAGTTT 60.107 50.000 0.00 0.00 0.00 2.66
3586 3805 1.141254 TGGCCGAGGTCACAAAGTTTA 59.859 47.619 0.00 0.00 0.00 2.01
3587 3806 2.224670 TGGCCGAGGTCACAAAGTTTAT 60.225 45.455 0.00 0.00 0.00 1.40
3588 3807 3.008157 TGGCCGAGGTCACAAAGTTTATA 59.992 43.478 0.00 0.00 0.00 0.98
3589 3808 3.373130 GGCCGAGGTCACAAAGTTTATAC 59.627 47.826 0.00 0.00 0.00 1.47
3590 3809 4.251268 GCCGAGGTCACAAAGTTTATACT 58.749 43.478 0.00 0.00 35.68 2.12
3592 3811 4.868734 CCGAGGTCACAAAGTTTATACTCC 59.131 45.833 0.00 0.00 31.99 3.85
3595 3814 6.051179 AGGTCACAAAGTTTATACTCCCTC 57.949 41.667 0.00 0.00 31.99 4.30
3596 3815 5.045797 AGGTCACAAAGTTTATACTCCCTCC 60.046 44.000 0.00 0.00 31.99 4.30
3597 3816 4.868734 GTCACAAAGTTTATACTCCCTCCG 59.131 45.833 0.00 0.00 31.99 4.63
3598 3817 4.529377 TCACAAAGTTTATACTCCCTCCGT 59.471 41.667 0.00 0.00 31.99 4.69
3606 3921 3.840124 ATACTCCCTCCGTTCCATTTC 57.160 47.619 0.00 0.00 0.00 2.17
3612 3927 0.721718 CTCCGTTCCATTTCAGCGTC 59.278 55.000 0.00 0.00 0.00 5.19
3618 3933 4.378978 CCGTTCCATTTCAGCGTCAATTAA 60.379 41.667 0.00 0.00 0.00 1.40
3624 3939 8.394971 TCCATTTCAGCGTCAATTAATATGAT 57.605 30.769 0.00 0.00 0.00 2.45
3631 3946 9.927668 TCAGCGTCAATTAATATGATAATGAGA 57.072 29.630 0.00 0.00 0.00 3.27
3632 3947 9.964253 CAGCGTCAATTAATATGATAATGAGAC 57.036 33.333 0.00 0.00 32.90 3.36
3633 3948 8.864024 AGCGTCAATTAATATGATAATGAGACG 58.136 33.333 20.91 20.91 45.41 4.18
3634 3949 8.860128 GCGTCAATTAATATGATAATGAGACGA 58.140 33.333 24.75 5.51 45.44 4.20
3665 3980 9.040939 AGTATTTTATTTTGTGAAAACCTGTGC 57.959 29.630 0.00 0.00 32.37 4.57
3690 4005 8.420189 GCAAGTTTTTAATCAATATCTATGCGC 58.580 33.333 0.00 0.00 0.00 6.09
3699 4014 6.218108 TCAATATCTATGCGCATGATCTCT 57.782 37.500 32.48 16.24 0.00 3.10
3704 4019 9.610705 AATATCTATGCGCATGATCTCTATTTT 57.389 29.630 32.48 12.33 0.00 1.82
3705 4020 6.957984 TCTATGCGCATGATCTCTATTTTC 57.042 37.500 32.48 0.00 0.00 2.29
3713 4028 7.589221 GCGCATGATCTCTATTTTCTAAAAAGG 59.411 37.037 0.30 0.00 0.00 3.11
3731 4046 9.256477 CTAAAAAGGTCAAAATTTAAGTGGACC 57.744 33.333 13.62 13.62 43.93 4.46
3733 4048 5.074746 AGGTCAAAATTTAAGTGGACCCT 57.925 39.130 16.06 6.09 44.51 4.34
3758 4073 6.978343 ATTTGTCCGAATTCTACAAATCGA 57.022 33.333 26.80 14.21 45.84 3.59
3762 4077 5.100259 GTCCGAATTCTACAAATCGACTCA 58.900 41.667 3.52 0.00 37.48 3.41
3779 4094 0.888736 TCAACCATGTCTGCGTTGGG 60.889 55.000 10.60 0.00 35.75 4.12
3782 4097 1.003355 CCATGTCTGCGTTGGGAGT 60.003 57.895 0.00 0.00 32.69 3.85
3784 4099 1.021390 CATGTCTGCGTTGGGAGTCC 61.021 60.000 0.00 0.00 32.69 3.85
3786 4101 1.374758 GTCTGCGTTGGGAGTCCTG 60.375 63.158 9.58 0.00 32.69 3.86
3787 4102 2.046892 CTGCGTTGGGAGTCCTGG 60.047 66.667 9.58 0.00 0.00 4.45
3788 4103 2.525629 TGCGTTGGGAGTCCTGGA 60.526 61.111 9.58 0.00 0.00 3.86
3789 4104 1.903877 CTGCGTTGGGAGTCCTGGAT 61.904 60.000 9.58 0.00 0.00 3.41
3790 4105 1.299976 GCGTTGGGAGTCCTGGATT 59.700 57.895 9.58 0.00 0.00 3.01
3791 4106 0.322546 GCGTTGGGAGTCCTGGATTT 60.323 55.000 9.58 0.00 0.00 2.17
3792 4107 1.065709 GCGTTGGGAGTCCTGGATTTA 60.066 52.381 9.58 0.00 0.00 1.40
3793 4108 2.629051 CGTTGGGAGTCCTGGATTTAC 58.371 52.381 9.58 0.00 0.00 2.01
3794 4109 2.236395 CGTTGGGAGTCCTGGATTTACT 59.764 50.000 9.58 0.00 0.00 2.24
3795 4110 3.449737 CGTTGGGAGTCCTGGATTTACTA 59.550 47.826 9.58 0.00 0.00 1.82
3796 4111 4.081309 CGTTGGGAGTCCTGGATTTACTAA 60.081 45.833 9.58 0.00 0.00 2.24
3797 4112 5.429130 GTTGGGAGTCCTGGATTTACTAAG 58.571 45.833 9.58 0.00 0.00 2.18
3798 4113 3.454812 TGGGAGTCCTGGATTTACTAAGC 59.545 47.826 9.58 0.00 0.00 3.09
3799 4114 3.492829 GGGAGTCCTGGATTTACTAAGCG 60.493 52.174 9.58 0.00 0.00 4.68
3800 4115 3.124560 GAGTCCTGGATTTACTAAGCGC 58.875 50.000 0.00 0.00 0.00 5.92
3801 4116 2.158943 AGTCCTGGATTTACTAAGCGCC 60.159 50.000 2.29 0.00 0.00 6.53
3802 4117 2.116238 TCCTGGATTTACTAAGCGCCT 58.884 47.619 2.29 0.00 0.00 5.52
3803 4118 2.102588 TCCTGGATTTACTAAGCGCCTC 59.897 50.000 2.29 0.00 0.00 4.70
3804 4119 2.103263 CCTGGATTTACTAAGCGCCTCT 59.897 50.000 2.29 0.00 0.00 3.69
3805 4120 3.432326 CCTGGATTTACTAAGCGCCTCTT 60.432 47.826 2.29 0.00 38.79 2.85
3806 4121 4.192317 CTGGATTTACTAAGCGCCTCTTT 58.808 43.478 2.29 0.00 36.25 2.52
3807 4122 3.938963 TGGATTTACTAAGCGCCTCTTTG 59.061 43.478 2.29 0.00 36.25 2.77
3808 4123 3.312697 GGATTTACTAAGCGCCTCTTTGG 59.687 47.826 2.29 0.00 36.25 3.28
3809 4124 3.688694 TTTACTAAGCGCCTCTTTGGA 57.311 42.857 2.29 0.00 38.35 3.53
3810 4125 2.667473 TACTAAGCGCCTCTTTGGAC 57.333 50.000 2.29 0.00 38.35 4.02
3811 4126 0.977395 ACTAAGCGCCTCTTTGGACT 59.023 50.000 2.29 0.00 38.35 3.85
3812 4127 1.338200 ACTAAGCGCCTCTTTGGACTG 60.338 52.381 2.29 0.00 38.35 3.51
3813 4128 0.685097 TAAGCGCCTCTTTGGACTGT 59.315 50.000 2.29 0.00 38.35 3.55
3814 4129 0.685097 AAGCGCCTCTTTGGACTGTA 59.315 50.000 2.29 0.00 38.35 2.74
3818 4133 1.275291 CGCCTCTTTGGACTGTAGGAA 59.725 52.381 0.00 0.00 38.35 3.36
3827 4142 6.879458 TCTTTGGACTGTAGGAATTTCTAAGC 59.121 38.462 0.00 0.00 0.00 3.09
3843 4172 4.335416 TCTAAGCCTTTTGGACCATTCAG 58.665 43.478 0.00 0.00 44.07 3.02
3845 4174 3.463048 AGCCTTTTGGACCATTCAGAT 57.537 42.857 0.00 0.00 44.07 2.90
3849 4178 4.381292 GCCTTTTGGACCATTCAGATTCAG 60.381 45.833 0.00 0.00 44.07 3.02
3852 4181 6.405508 CCTTTTGGACCATTCAGATTCAGATG 60.406 42.308 0.00 0.00 44.07 2.90
3859 4188 7.146715 ACCATTCAGATTCAGATGTTCCTAT 57.853 36.000 0.00 0.00 0.00 2.57
3865 4194 9.823647 TTCAGATTCAGATGTTCCTATTACTTC 57.176 33.333 0.00 0.00 0.00 3.01
3872 4201 9.206690 TCAGATGTTCCTATTACTTCTCATTCT 57.793 33.333 0.00 0.00 30.30 2.40
3907 4236 2.242043 CATGAGCCCACACCTCTTTTT 58.758 47.619 0.00 0.00 0.00 1.94
3948 4322 8.001292 ACCATCTAAAGGCAGCTCTTATAAAAT 58.999 33.333 0.00 0.00 0.00 1.82
3952 4326 4.796110 AGGCAGCTCTTATAAAATCCCA 57.204 40.909 0.00 0.00 0.00 4.37
3955 4329 5.369699 AGGCAGCTCTTATAAAATCCCAGTA 59.630 40.000 0.00 0.00 0.00 2.74
3958 4332 7.231519 GGCAGCTCTTATAAAATCCCAGTATTT 59.768 37.037 0.00 0.00 0.00 1.40
3984 4358 8.506168 TGAAATCTTGTTTATAGTAGGCAAGG 57.494 34.615 0.00 0.00 37.65 3.61
3985 4359 6.944234 AATCTTGTTTATAGTAGGCAAGGC 57.056 37.500 0.00 0.00 37.65 4.35
3986 4360 5.429681 TCTTGTTTATAGTAGGCAAGGCA 57.570 39.130 0.00 0.00 37.65 4.75
3987 4361 6.001449 TCTTGTTTATAGTAGGCAAGGCAT 57.999 37.500 0.00 0.00 37.65 4.40
3988 4362 6.055588 TCTTGTTTATAGTAGGCAAGGCATC 58.944 40.000 0.00 0.00 37.65 3.91
3989 4363 5.630415 TGTTTATAGTAGGCAAGGCATCT 57.370 39.130 0.00 0.00 0.00 2.90
3990 4364 6.740944 TGTTTATAGTAGGCAAGGCATCTA 57.259 37.500 0.00 0.00 0.00 1.98
3991 4365 7.131907 TGTTTATAGTAGGCAAGGCATCTAA 57.868 36.000 0.00 0.00 0.00 2.10
3992 4366 7.570132 TGTTTATAGTAGGCAAGGCATCTAAA 58.430 34.615 0.00 0.00 0.00 1.85
3993 4367 7.715249 TGTTTATAGTAGGCAAGGCATCTAAAG 59.285 37.037 0.00 0.00 0.00 1.85
3994 4368 7.612065 TTATAGTAGGCAAGGCATCTAAAGA 57.388 36.000 0.00 0.00 0.00 2.52
3995 4369 6.694445 ATAGTAGGCAAGGCATCTAAAGAT 57.306 37.500 0.00 0.00 34.56 2.40
3996 4370 5.379706 AGTAGGCAAGGCATCTAAAGATT 57.620 39.130 0.00 0.00 31.21 2.40
3997 4371 5.372373 AGTAGGCAAGGCATCTAAAGATTC 58.628 41.667 0.00 0.00 31.21 2.52
3998 4372 4.516652 AGGCAAGGCATCTAAAGATTCT 57.483 40.909 0.00 0.00 31.21 2.40
3999 4373 4.205587 AGGCAAGGCATCTAAAGATTCTG 58.794 43.478 0.00 0.00 31.21 3.02
4000 4374 3.317430 GGCAAGGCATCTAAAGATTCTGG 59.683 47.826 0.00 0.00 31.21 3.86
4001 4375 3.317430 GCAAGGCATCTAAAGATTCTGGG 59.683 47.826 0.00 0.00 31.21 4.45
4002 4376 4.530875 CAAGGCATCTAAAGATTCTGGGT 58.469 43.478 0.00 0.00 31.21 4.51
4003 4377 4.870021 AGGCATCTAAAGATTCTGGGTT 57.130 40.909 0.00 0.00 31.21 4.11
4004 4378 5.198602 AGGCATCTAAAGATTCTGGGTTT 57.801 39.130 0.00 0.00 31.21 3.27
4005 4379 5.196695 AGGCATCTAAAGATTCTGGGTTTC 58.803 41.667 0.00 0.00 31.21 2.78
4006 4380 4.035675 GGCATCTAAAGATTCTGGGTTTCG 59.964 45.833 0.00 0.00 31.21 3.46
4007 4381 4.496507 GCATCTAAAGATTCTGGGTTTCGC 60.497 45.833 0.00 0.00 31.21 4.70
4008 4382 4.553330 TCTAAAGATTCTGGGTTTCGCT 57.447 40.909 0.00 0.00 0.00 4.93
4009 4383 5.670792 TCTAAAGATTCTGGGTTTCGCTA 57.329 39.130 0.00 0.00 0.00 4.26
4010 4384 5.416947 TCTAAAGATTCTGGGTTTCGCTAC 58.583 41.667 0.00 0.00 0.00 3.58
4011 4385 3.695830 AAGATTCTGGGTTTCGCTACA 57.304 42.857 0.00 0.00 0.00 2.74
4012 4386 3.914426 AGATTCTGGGTTTCGCTACAT 57.086 42.857 0.00 0.00 0.00 2.29
4013 4387 3.535561 AGATTCTGGGTTTCGCTACATG 58.464 45.455 0.00 0.00 0.00 3.21
4014 4388 2.851263 TTCTGGGTTTCGCTACATGT 57.149 45.000 2.69 2.69 0.00 3.21
4015 4389 2.380084 TCTGGGTTTCGCTACATGTC 57.620 50.000 0.00 0.00 0.00 3.06
4016 4390 1.066430 TCTGGGTTTCGCTACATGTCC 60.066 52.381 0.00 0.00 0.00 4.02
4017 4391 0.981183 TGGGTTTCGCTACATGTCCT 59.019 50.000 0.00 0.00 0.00 3.85
4018 4392 1.349688 TGGGTTTCGCTACATGTCCTT 59.650 47.619 0.00 0.00 0.00 3.36
4019 4393 2.568062 TGGGTTTCGCTACATGTCCTTA 59.432 45.455 0.00 0.00 0.00 2.69
4020 4394 3.008157 TGGGTTTCGCTACATGTCCTTAA 59.992 43.478 0.00 0.00 0.00 1.85
4021 4395 4.004982 GGGTTTCGCTACATGTCCTTAAA 58.995 43.478 0.00 0.00 0.00 1.52
4022 4396 4.638865 GGGTTTCGCTACATGTCCTTAAAT 59.361 41.667 0.00 0.00 0.00 1.40
4023 4397 5.818857 GGGTTTCGCTACATGTCCTTAAATA 59.181 40.000 0.00 0.00 0.00 1.40
4024 4398 6.238293 GGGTTTCGCTACATGTCCTTAAATAC 60.238 42.308 0.00 0.00 0.00 1.89
4025 4399 6.314400 GGTTTCGCTACATGTCCTTAAATACA 59.686 38.462 0.00 0.00 0.00 2.29
4026 4400 7.012044 GGTTTCGCTACATGTCCTTAAATACAT 59.988 37.037 0.00 0.00 36.78 2.29
4046 4420 9.466497 AATACATGATATAAGTAGGCCAATTGG 57.534 33.333 20.81 20.81 38.53 3.16
4047 4421 7.090319 ACATGATATAAGTAGGCCAATTGGA 57.910 36.000 29.02 4.21 37.39 3.53
4048 4422 7.526041 ACATGATATAAGTAGGCCAATTGGAA 58.474 34.615 29.02 9.55 37.39 3.53
4049 4423 8.172741 ACATGATATAAGTAGGCCAATTGGAAT 58.827 33.333 29.02 16.97 37.39 3.01
4050 4424 9.028284 CATGATATAAGTAGGCCAATTGGAATT 57.972 33.333 29.02 14.81 37.39 2.17
4051 4425 9.605951 ATGATATAAGTAGGCCAATTGGAATTT 57.394 29.630 29.02 16.11 37.39 1.82
4052 4426 9.432982 TGATATAAGTAGGCCAATTGGAATTTT 57.567 29.630 29.02 15.78 37.39 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.235065 CGATCTGCCGGAATCGAG 57.765 61.111 22.40 4.02 38.67 4.04
52 53 2.491022 GGACGGAGACAGATCGGGG 61.491 68.421 0.00 0.00 0.00 5.73
73 74 0.099968 GGGGAAAATTACGCGAAGGC 59.900 55.000 15.93 0.00 0.00 4.35
110 114 9.308000 TCTACCAAAACAAAATATCAATCCAGT 57.692 29.630 0.00 0.00 0.00 4.00
113 117 9.750125 GGATCTACCAAAACAAAATATCAATCC 57.250 33.333 0.00 0.00 38.79 3.01
119 123 6.405397 GCCACGGATCTACCAAAACAAAATAT 60.405 38.462 0.00 0.00 38.90 1.28
121 125 4.321675 GCCACGGATCTACCAAAACAAAAT 60.322 41.667 0.00 0.00 38.90 1.82
170 175 0.249868 GCGCATCACAGGCCATACTA 60.250 55.000 5.01 0.00 0.00 1.82
171 176 1.524621 GCGCATCACAGGCCATACT 60.525 57.895 5.01 0.00 0.00 2.12
175 180 4.075854 TACGCGCATCACAGGCCA 62.076 61.111 5.73 0.00 0.00 5.36
238 243 0.737219 GATTGAGCAGGCACACATCC 59.263 55.000 0.00 0.00 0.00 3.51
243 248 1.073025 AACGGATTGAGCAGGCACA 59.927 52.632 0.00 0.00 0.00 4.57
249 254 0.249120 ACGATCCAACGGATTGAGCA 59.751 50.000 15.75 0.00 44.29 4.26
272 277 1.938577 ACATCATGCAACAGATCGAGC 59.061 47.619 0.00 0.00 0.00 5.03
286 291 5.010112 AGACGATCCTAACGAATCACATCAT 59.990 40.000 0.00 0.00 34.70 2.45
340 345 3.562141 CACACACGATAAAAGGGACAACA 59.438 43.478 0.00 0.00 0.00 3.33
346 351 2.095768 CACTGCACACACGATAAAAGGG 60.096 50.000 0.00 0.00 0.00 3.95
364 369 0.324943 ACCGTTTAGCCTGCATCACT 59.675 50.000 0.00 0.00 0.00 3.41
462 468 4.363990 ACGCTCTCCACGCACAGG 62.364 66.667 0.00 0.00 0.00 4.00
466 473 4.700365 CACGACGCTCTCCACGCA 62.700 66.667 0.00 0.00 0.00 5.24
483 490 1.950909 AGATCACTGGCTACGCTAGAC 59.049 52.381 6.22 0.00 39.54 2.59
513 520 3.192001 CACAGGTTCACAAATCCATCTGG 59.808 47.826 0.00 0.00 0.00 3.86
563 570 3.758554 AGGCTGCCAAACTACATTAACAG 59.241 43.478 22.65 0.00 0.00 3.16
587 594 9.146984 CATTAACAGATAACGACCTTTAGACAA 57.853 33.333 0.00 0.00 0.00 3.18
594 601 8.732746 AATTAGCATTAACAGATAACGACCTT 57.267 30.769 0.00 0.00 0.00 3.50
597 604 9.422196 GTCAAATTAGCATTAACAGATAACGAC 57.578 33.333 0.00 0.00 0.00 4.34
636 644 9.320295 ACTCATCCTGGGACAAATAATTAAAAA 57.680 29.630 0.00 0.00 38.70 1.94
721 729 6.594937 GGTGGTAACCTTAACATATTCGTTCA 59.405 38.462 0.00 0.00 43.84 3.18
726 734 7.558444 TGATTGGGTGGTAACCTTAACATATTC 59.442 37.037 0.00 0.00 46.70 1.75
761 769 7.166691 AGTAACCTAGAACATAAAGCTTCGA 57.833 36.000 0.00 0.00 0.00 3.71
762 770 7.829378 AAGTAACCTAGAACATAAAGCTTCG 57.171 36.000 0.00 0.00 0.00 3.79
765 773 7.686434 TCCAAAGTAACCTAGAACATAAAGCT 58.314 34.615 0.00 0.00 0.00 3.74
792 800 9.731819 AACTTCACTACTGACACGTATATATTG 57.268 33.333 0.00 0.00 0.00 1.90
803 811 6.096423 ACACTGAAGTAACTTCACTACTGACA 59.904 38.462 0.00 1.59 44.27 3.58
828 836 2.764010 TGCCTCGAAGTATTTAGCCTGA 59.236 45.455 0.00 0.00 0.00 3.86
871 879 8.443953 AGTTGGCAGCATAAAAATAAACAAAA 57.556 26.923 3.63 0.00 0.00 2.44
872 880 8.443953 AAGTTGGCAGCATAAAAATAAACAAA 57.556 26.923 3.63 0.00 0.00 2.83
968 977 8.598075 GCTCCTGCTTTGAATTTTATTTACATG 58.402 33.333 0.00 0.00 36.03 3.21
1029 1038 3.683802 AGGATCTTTCTGCAAGTCCTTG 58.316 45.455 2.63 2.63 38.72 3.61
1116 1125 5.593183 CACATATCAGTGCTAAGATGCAG 57.407 43.478 0.00 0.00 44.20 4.41
1129 1138 3.311596 CACATGACCACAGCACATATCAG 59.688 47.826 0.00 0.00 0.00 2.90
1136 1148 0.604780 AGCTCACATGACCACAGCAC 60.605 55.000 0.00 0.00 0.00 4.40
1153 1165 7.801315 TGAATTACGATACACAAAGTTGAAAGC 59.199 33.333 0.00 0.00 0.00 3.51
1172 1184 6.657541 TGGAAGGTGAATTACTGGTGAATTAC 59.342 38.462 0.00 0.00 0.00 1.89
1173 1185 6.785076 TGGAAGGTGAATTACTGGTGAATTA 58.215 36.000 0.00 0.00 0.00 1.40
1174 1186 5.640147 TGGAAGGTGAATTACTGGTGAATT 58.360 37.500 0.00 0.00 0.00 2.17
1175 1187 5.255397 TGGAAGGTGAATTACTGGTGAAT 57.745 39.130 0.00 0.00 0.00 2.57
1176 1188 4.715534 TGGAAGGTGAATTACTGGTGAA 57.284 40.909 0.00 0.00 0.00 3.18
1177 1189 4.536090 AGATGGAAGGTGAATTACTGGTGA 59.464 41.667 0.00 0.00 0.00 4.02
1178 1190 4.848357 AGATGGAAGGTGAATTACTGGTG 58.152 43.478 0.00 0.00 0.00 4.17
1179 1191 4.785376 AGAGATGGAAGGTGAATTACTGGT 59.215 41.667 0.00 0.00 0.00 4.00
1180 1192 5.121811 CAGAGATGGAAGGTGAATTACTGG 58.878 45.833 0.00 0.00 0.00 4.00
1181 1193 5.121811 CCAGAGATGGAAGGTGAATTACTG 58.878 45.833 0.00 0.00 0.00 2.74
1182 1194 4.785376 ACCAGAGATGGAAGGTGAATTACT 59.215 41.667 0.31 0.00 32.04 2.24
1254 1266 9.578576 AGGATATTTGTAGACATTGTGCATAAT 57.421 29.630 2.38 2.38 0.00 1.28
1264 1276 6.653020 TGACAGCAAGGATATTTGTAGACAT 58.347 36.000 0.00 0.00 0.00 3.06
1307 1319 8.345565 GCCATAAATAGTTCCAGTGAAGTTATG 58.654 37.037 0.00 0.00 35.72 1.90
1314 1326 5.056480 CGATGCCATAAATAGTTCCAGTGA 58.944 41.667 0.00 0.00 0.00 3.41
1366 1384 6.309737 GTGACTCAGCAAAATGAAATCCATTC 59.690 38.462 0.00 0.00 44.28 2.67
1384 1402 5.250543 TCCAATTTCCTGGATAAGTGACTCA 59.749 40.000 15.59 0.00 40.71 3.41
1407 1425 9.586150 CAGCGAATGAAACTGTGTATTATAATC 57.414 33.333 0.00 0.00 0.00 1.75
1430 1448 1.609208 TCTCTTTGGGCAAGAACAGC 58.391 50.000 0.00 0.00 41.25 4.40
1458 1476 7.147759 ACACTGACAAGACAGAAGCTGATATAT 60.148 37.037 6.55 0.00 40.63 0.86
1463 1481 2.432146 ACACTGACAAGACAGAAGCTGA 59.568 45.455 6.55 0.00 40.63 4.26
1467 1485 3.742433 AGGACACTGACAAGACAGAAG 57.258 47.619 6.55 1.94 40.63 2.85
1469 1487 4.487714 AAAAGGACACTGACAAGACAGA 57.512 40.909 6.55 0.00 40.63 3.41
1588 1611 1.200020 GTAGTGGTTGTTGATGGCTGC 59.800 52.381 0.00 0.00 0.00 5.25
1869 1892 4.516321 GCAAGGAAATTTGTTTGGCTCAAT 59.484 37.500 0.00 0.00 0.00 2.57
1975 2002 6.662414 TGAACATAAATCACAGGATCGAAC 57.338 37.500 0.00 0.00 31.88 3.95
1978 2005 5.180117 GGGATGAACATAAATCACAGGATCG 59.820 44.000 0.00 0.00 31.88 3.69
1980 2007 6.066690 CAGGGATGAACATAAATCACAGGAT 58.933 40.000 0.00 0.00 34.43 3.24
1983 2010 4.641541 TGCAGGGATGAACATAAATCACAG 59.358 41.667 0.00 0.00 0.00 3.66
2028 2055 7.009540 GCAAACAAATGAGGCATAACAAGATAC 59.990 37.037 0.00 0.00 0.00 2.24
2040 2067 3.365820 CGATTTCTGCAAACAAATGAGGC 59.634 43.478 3.32 0.00 0.00 4.70
2041 2068 4.549458 ACGATTTCTGCAAACAAATGAGG 58.451 39.130 0.00 0.00 0.00 3.86
2053 2080 8.764524 AGAGGTGATATAATAACGATTTCTGC 57.235 34.615 0.00 0.00 0.00 4.26
2118 2155 9.747898 ACCTATCATAGAATGTGGTGTTAAAAA 57.252 29.630 0.00 0.00 32.05 1.94
2155 2192 4.994907 AAAAACAACAACAGGTAGACCC 57.005 40.909 0.00 0.00 36.42 4.46
2191 2228 6.459923 AGAGATACTTGAGAACACAAAGGAC 58.540 40.000 0.00 0.00 0.00 3.85
2486 2530 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2487 2531 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2488 2532 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
2489 2533 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
2490 2534 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
2491 2535 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
2492 2536 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
2493 2537 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2494 2538 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2495 2539 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2498 2542 9.991906 CATTTACTCCCTCCGTAAAGAAATATA 57.008 33.333 0.00 0.00 39.40 0.86
2499 2543 8.491958 ACATTTACTCCCTCCGTAAAGAAATAT 58.508 33.333 0.00 0.00 39.40 1.28
2500 2544 7.854337 ACATTTACTCCCTCCGTAAAGAAATA 58.146 34.615 0.00 0.00 39.40 1.40
2501 2545 6.718294 ACATTTACTCCCTCCGTAAAGAAAT 58.282 36.000 0.00 0.00 39.40 2.17
2502 2546 6.117975 ACATTTACTCCCTCCGTAAAGAAA 57.882 37.500 0.00 0.00 39.40 2.52
2503 2547 5.750352 ACATTTACTCCCTCCGTAAAGAA 57.250 39.130 0.00 0.00 39.40 2.52
2504 2548 5.750352 AACATTTACTCCCTCCGTAAAGA 57.250 39.130 0.00 0.00 39.40 2.52
2505 2549 5.935789 TCAAACATTTACTCCCTCCGTAAAG 59.064 40.000 0.00 0.00 39.40 1.85
2506 2550 5.867330 TCAAACATTTACTCCCTCCGTAAA 58.133 37.500 0.00 0.00 40.07 2.01
2507 2551 5.486735 TCAAACATTTACTCCCTCCGTAA 57.513 39.130 0.00 0.00 0.00 3.18
2508 2552 5.046159 ACATCAAACATTTACTCCCTCCGTA 60.046 40.000 0.00 0.00 0.00 4.02
2509 2553 4.261801 CATCAAACATTTACTCCCTCCGT 58.738 43.478 0.00 0.00 0.00 4.69
2510 2554 4.094887 CACATCAAACATTTACTCCCTCCG 59.905 45.833 0.00 0.00 0.00 4.63
2511 2555 5.253330 TCACATCAAACATTTACTCCCTCC 58.747 41.667 0.00 0.00 0.00 4.30
2512 2556 7.396540 AATCACATCAAACATTTACTCCCTC 57.603 36.000 0.00 0.00 0.00 4.30
2513 2557 7.451255 TCAAATCACATCAAACATTTACTCCCT 59.549 33.333 0.00 0.00 0.00 4.20
2514 2558 7.601856 TCAAATCACATCAAACATTTACTCCC 58.398 34.615 0.00 0.00 0.00 4.30
2515 2559 9.079833 CATCAAATCACATCAAACATTTACTCC 57.920 33.333 0.00 0.00 0.00 3.85
2516 2560 9.079833 CCATCAAATCACATCAAACATTTACTC 57.920 33.333 0.00 0.00 0.00 2.59
2517 2561 8.805175 TCCATCAAATCACATCAAACATTTACT 58.195 29.630 0.00 0.00 0.00 2.24
2518 2562 8.863049 GTCCATCAAATCACATCAAACATTTAC 58.137 33.333 0.00 0.00 0.00 2.01
2519 2563 7.754475 CGTCCATCAAATCACATCAAACATTTA 59.246 33.333 0.00 0.00 0.00 1.40
2520 2564 6.587226 CGTCCATCAAATCACATCAAACATTT 59.413 34.615 0.00 0.00 0.00 2.32
2521 2565 6.094719 CGTCCATCAAATCACATCAAACATT 58.905 36.000 0.00 0.00 0.00 2.71
2539 2583 7.923878 ACATTTAAAACTTTTTGTAGCGTCCAT 59.076 29.630 0.00 0.00 0.00 3.41
2545 2589 9.005180 GGCAAAACATTTAAAACTTTTTGTAGC 57.995 29.630 21.33 13.81 38.72 3.58
2594 2638 1.238439 AAAGGTCATGACAAGGCACG 58.762 50.000 26.47 0.00 0.00 5.34
2598 2642 1.273327 GGCCAAAAGGTCATGACAAGG 59.727 52.381 26.47 19.06 0.00 3.61
2714 2766 1.872952 GTTTGCAATGTTTTGAGCCCC 59.127 47.619 0.00 0.00 34.60 5.80
2773 2825 2.676232 CTCAAGGAGAGGGCTGTCA 58.324 57.895 0.00 0.00 40.84 3.58
2824 2876 9.743057 CAAATGGTAACTGTATTCTGTTCAAAA 57.257 29.630 0.00 0.00 37.09 2.44
2825 2877 8.356657 CCAAATGGTAACTGTATTCTGTTCAAA 58.643 33.333 0.00 0.00 37.09 2.69
2826 2878 7.881142 CCAAATGGTAACTGTATTCTGTTCAA 58.119 34.615 0.00 0.00 37.09 2.69
2827 2879 7.447374 CCAAATGGTAACTGTATTCTGTTCA 57.553 36.000 0.00 0.00 37.09 3.18
2840 2892 8.148962 GCATATGCAATGCACCAAATGGTAAC 62.149 42.308 22.84 1.42 43.04 2.50
2841 2893 6.197173 GCATATGCAATGCACCAAATGGTAA 61.197 40.000 22.84 0.00 43.04 2.85
2842 2894 4.740034 GCATATGCAATGCACCAAATGGTA 60.740 41.667 22.84 0.00 43.04 3.25
2843 2895 3.990386 GCATATGCAATGCACCAAATGGT 60.990 43.478 22.84 0.00 43.04 3.55
2844 2896 2.546368 GCATATGCAATGCACCAAATGG 59.454 45.455 22.84 0.00 43.04 3.16
2845 2897 3.870723 GCATATGCAATGCACCAAATG 57.129 42.857 22.84 12.93 43.04 2.32
2901 2953 3.960102 TGAAAGCAGAACCTGGTGAAAAT 59.040 39.130 0.00 0.00 41.59 1.82
2932 2984 0.900421 GGTTAGGGTCGGTAAGCAGT 59.100 55.000 0.00 0.00 0.00 4.40
2971 3023 3.008923 TCTTGTACATGTGGGCAATCTCA 59.991 43.478 9.11 0.00 0.00 3.27
3153 3205 3.986006 GGGAGACACACGCGACCA 61.986 66.667 15.93 0.00 0.00 4.02
3209 3261 7.275888 TCATTATGGACTTTGGCAATGATAC 57.724 36.000 18.73 9.10 29.84 2.24
3332 3396 2.421619 CAGAGAGGAGACAAAAGCACC 58.578 52.381 0.00 0.00 0.00 5.01
3355 3441 6.403636 GGAACCAACAATAGAGCAGTAACATG 60.404 42.308 0.00 0.00 0.00 3.21
3372 3458 0.958822 ACAGCCAATTCGGAACCAAC 59.041 50.000 0.00 0.00 36.56 3.77
3378 3465 1.621317 TCACACTACAGCCAATTCGGA 59.379 47.619 0.00 0.00 36.56 4.55
3382 3469 5.003804 CCTAAGTTCACACTACAGCCAATT 58.996 41.667 0.00 0.00 30.68 2.32
3394 3481 2.857186 TGCTGATGCCTAAGTTCACA 57.143 45.000 0.00 0.00 38.71 3.58
3395 3482 4.503741 TTTTGCTGATGCCTAAGTTCAC 57.496 40.909 0.00 0.00 38.71 3.18
3396 3483 5.945784 AGTATTTTGCTGATGCCTAAGTTCA 59.054 36.000 0.00 0.00 38.71 3.18
3397 3484 6.442513 AGTATTTTGCTGATGCCTAAGTTC 57.557 37.500 0.00 0.00 38.71 3.01
3398 3485 7.829211 TCTTAGTATTTTGCTGATGCCTAAGTT 59.171 33.333 0.00 0.00 36.21 2.66
3399 3486 7.338710 TCTTAGTATTTTGCTGATGCCTAAGT 58.661 34.615 0.00 0.00 36.21 2.24
3400 3487 7.792374 TCTTAGTATTTTGCTGATGCCTAAG 57.208 36.000 0.00 0.00 36.16 2.18
3401 3488 8.574251 TTTCTTAGTATTTTGCTGATGCCTAA 57.426 30.769 0.00 0.00 38.71 2.69
3402 3489 8.046708 TCTTTCTTAGTATTTTGCTGATGCCTA 58.953 33.333 0.00 0.00 38.71 3.93
3403 3490 6.886459 TCTTTCTTAGTATTTTGCTGATGCCT 59.114 34.615 0.00 0.00 38.71 4.75
3418 3505 5.131809 CCCCAGAATCAGGATCTTTCTTAGT 59.868 44.000 0.00 0.00 0.00 2.24
3422 3509 2.174424 GCCCCAGAATCAGGATCTTTCT 59.826 50.000 0.00 0.00 0.00 2.52
3423 3510 2.092212 TGCCCCAGAATCAGGATCTTTC 60.092 50.000 0.00 0.00 0.00 2.62
3425 3512 1.600058 TGCCCCAGAATCAGGATCTT 58.400 50.000 0.00 0.00 0.00 2.40
3426 3513 1.830486 ATGCCCCAGAATCAGGATCT 58.170 50.000 0.00 0.00 0.00 2.75
3427 3514 2.641815 AGTATGCCCCAGAATCAGGATC 59.358 50.000 0.00 0.00 0.00 3.36
3428 3515 2.711174 AGTATGCCCCAGAATCAGGAT 58.289 47.619 0.00 0.00 0.00 3.24
3429 3516 2.196742 AGTATGCCCCAGAATCAGGA 57.803 50.000 0.00 0.00 0.00 3.86
3431 3518 6.966534 ATAAAAAGTATGCCCCAGAATCAG 57.033 37.500 0.00 0.00 0.00 2.90
3478 3565 7.540745 GCGATTCACAAATGGTACTATTGTTTT 59.459 33.333 5.10 0.00 36.14 2.43
3479 3566 7.027161 GCGATTCACAAATGGTACTATTGTTT 58.973 34.615 5.10 0.00 36.14 2.83
3480 3567 6.150307 TGCGATTCACAAATGGTACTATTGTT 59.850 34.615 5.10 0.00 36.14 2.83
3482 3569 6.117911 TGCGATTCACAAATGGTACTATTG 57.882 37.500 5.10 4.97 0.00 1.90
3483 3570 6.542005 TCATGCGATTCACAAATGGTACTATT 59.458 34.615 0.00 0.00 0.00 1.73
3484 3571 6.054941 TCATGCGATTCACAAATGGTACTAT 58.945 36.000 0.00 0.00 0.00 2.12
3499 3663 2.364632 TCCCGTCATTTTCATGCGATT 58.635 42.857 0.00 0.00 34.04 3.34
3502 3666 2.518949 CTTTCCCGTCATTTTCATGCG 58.481 47.619 0.00 0.00 32.79 4.73
3515 3679 2.554370 TTGTGACCTTACCTTTCCCG 57.446 50.000 0.00 0.00 0.00 5.14
3521 3685 6.622427 AGCTATAACTTTGTGACCTTACCT 57.378 37.500 0.00 0.00 0.00 3.08
3524 3743 8.911918 TTTGAAGCTATAACTTTGTGACCTTA 57.088 30.769 0.00 0.00 0.00 2.69
3542 3761 5.582550 AGAGTGCTACAAAAGTTTTGAAGC 58.417 37.500 30.20 18.36 0.00 3.86
3543 3762 6.473455 CCAAGAGTGCTACAAAAGTTTTGAAG 59.527 38.462 30.20 8.73 0.00 3.02
3544 3763 6.329496 CCAAGAGTGCTACAAAAGTTTTGAA 58.671 36.000 30.20 12.74 0.00 2.69
3545 3764 5.678616 GCCAAGAGTGCTACAAAAGTTTTGA 60.679 40.000 30.20 15.20 0.00 2.69
3547 3766 4.441495 GGCCAAGAGTGCTACAAAAGTTTT 60.441 41.667 0.00 0.00 0.00 2.43
3548 3767 3.068165 GGCCAAGAGTGCTACAAAAGTTT 59.932 43.478 0.00 0.00 0.00 2.66
3549 3768 2.623416 GGCCAAGAGTGCTACAAAAGTT 59.377 45.455 0.00 0.00 0.00 2.66
3550 3769 2.230660 GGCCAAGAGTGCTACAAAAGT 58.769 47.619 0.00 0.00 0.00 2.66
3551 3770 1.197721 CGGCCAAGAGTGCTACAAAAG 59.802 52.381 2.24 0.00 0.00 2.27
3552 3771 1.202710 TCGGCCAAGAGTGCTACAAAA 60.203 47.619 2.24 0.00 0.00 2.44
3553 3772 0.394938 TCGGCCAAGAGTGCTACAAA 59.605 50.000 2.24 0.00 0.00 2.83
3554 3773 0.037326 CTCGGCCAAGAGTGCTACAA 60.037 55.000 2.24 0.00 33.75 2.41
3555 3774 1.591703 CTCGGCCAAGAGTGCTACA 59.408 57.895 2.24 0.00 33.75 2.74
3556 3775 1.153549 CCTCGGCCAAGAGTGCTAC 60.154 63.158 2.24 0.00 36.56 3.58
3557 3776 1.605058 GACCTCGGCCAAGAGTGCTA 61.605 60.000 2.24 0.00 36.56 3.49
3558 3777 2.925170 ACCTCGGCCAAGAGTGCT 60.925 61.111 2.24 0.00 36.56 4.40
3559 3778 2.435059 GACCTCGGCCAAGAGTGC 60.435 66.667 2.24 0.00 36.56 4.40
3560 3779 1.374758 GTGACCTCGGCCAAGAGTG 60.375 63.158 2.24 0.00 36.56 3.51
3562 3781 0.250295 TTTGTGACCTCGGCCAAGAG 60.250 55.000 2.24 1.40 37.97 2.85
3564 3783 0.535102 ACTTTGTGACCTCGGCCAAG 60.535 55.000 2.24 0.00 0.00 3.61
3565 3784 0.106918 AACTTTGTGACCTCGGCCAA 60.107 50.000 2.24 0.00 0.00 4.52
3568 3787 4.251268 AGTATAAACTTTGTGACCTCGGC 58.749 43.478 0.00 0.00 29.00 5.54
3569 3788 4.868734 GGAGTATAAACTTTGTGACCTCGG 59.131 45.833 0.00 0.00 35.56 4.63
3570 3789 4.868734 GGGAGTATAAACTTTGTGACCTCG 59.131 45.833 0.00 0.00 35.56 4.63
3571 3790 6.051179 AGGGAGTATAAACTTTGTGACCTC 57.949 41.667 0.00 0.00 35.56 3.85
3573 3792 5.183969 GGAGGGAGTATAAACTTTGTGACC 58.816 45.833 0.00 0.00 35.56 4.02
3575 3794 4.529377 ACGGAGGGAGTATAAACTTTGTGA 59.471 41.667 0.00 0.00 35.56 3.58
3576 3795 4.828829 ACGGAGGGAGTATAAACTTTGTG 58.171 43.478 0.00 0.00 35.56 3.33
3577 3796 5.485620 GAACGGAGGGAGTATAAACTTTGT 58.514 41.667 0.00 0.00 35.56 2.83
3578 3797 4.874396 GGAACGGAGGGAGTATAAACTTTG 59.126 45.833 0.00 0.00 35.56 2.77
3579 3798 4.533311 TGGAACGGAGGGAGTATAAACTTT 59.467 41.667 0.00 0.00 35.56 2.66
3581 3800 3.716431 TGGAACGGAGGGAGTATAAACT 58.284 45.455 0.00 0.00 39.21 2.66
3582 3801 4.684484 ATGGAACGGAGGGAGTATAAAC 57.316 45.455 0.00 0.00 0.00 2.01
3584 3803 4.717778 TGAAATGGAACGGAGGGAGTATAA 59.282 41.667 0.00 0.00 0.00 0.98
3585 3804 4.291792 TGAAATGGAACGGAGGGAGTATA 58.708 43.478 0.00 0.00 0.00 1.47
3586 3805 3.112263 TGAAATGGAACGGAGGGAGTAT 58.888 45.455 0.00 0.00 0.00 2.12
3587 3806 2.500098 CTGAAATGGAACGGAGGGAGTA 59.500 50.000 0.00 0.00 0.00 2.59
3588 3807 1.279271 CTGAAATGGAACGGAGGGAGT 59.721 52.381 0.00 0.00 0.00 3.85
3589 3808 2.014068 GCTGAAATGGAACGGAGGGAG 61.014 57.143 0.00 0.00 0.00 4.30
3590 3809 0.035439 GCTGAAATGGAACGGAGGGA 60.035 55.000 0.00 0.00 0.00 4.20
3592 3811 0.673644 ACGCTGAAATGGAACGGAGG 60.674 55.000 0.00 0.00 0.00 4.30
3595 3814 0.871722 TTGACGCTGAAATGGAACGG 59.128 50.000 0.00 0.00 0.00 4.44
3596 3815 2.900122 ATTGACGCTGAAATGGAACG 57.100 45.000 0.00 0.00 0.00 3.95
3597 3816 8.128582 TCATATTAATTGACGCTGAAATGGAAC 58.871 33.333 0.00 0.00 0.00 3.62
3598 3817 8.219546 TCATATTAATTGACGCTGAAATGGAA 57.780 30.769 0.00 0.00 0.00 3.53
3606 3921 9.964253 GTCTCATTATCATATTAATTGACGCTG 57.036 33.333 0.00 0.00 0.00 5.18
3627 3942 9.280174 ACAAAATAAAATACTTCCTTCGTCTCA 57.720 29.630 0.00 0.00 0.00 3.27
3639 3954 9.040939 GCACAGGTTTTCACAAAATAAAATACT 57.959 29.630 0.00 0.00 32.22 2.12
3640 3955 8.821894 TGCACAGGTTTTCACAAAATAAAATAC 58.178 29.630 0.00 0.00 32.22 1.89
3664 3979 8.420189 GCGCATAGATATTGATTAAAAACTTGC 58.580 33.333 0.30 0.00 0.00 4.01
3665 3980 9.449550 TGCGCATAGATATTGATTAAAAACTTG 57.550 29.630 5.66 0.00 0.00 3.16
3688 4003 8.616076 ACCTTTTTAGAAAATAGAGATCATGCG 58.384 33.333 0.00 0.00 0.00 4.73
3705 4020 9.256477 GGTCCACTTAAATTTTGACCTTTTTAG 57.744 33.333 0.00 0.00 39.30 1.85
3713 4028 6.590234 ATCAGGGTCCACTTAAATTTTGAC 57.410 37.500 0.00 0.00 0.00 3.18
3731 4046 6.494893 TTTGTAGAATTCGGACAAATCAGG 57.505 37.500 25.41 0.00 37.97 3.86
3758 4073 1.229428 CAACGCAGACATGGTTGAGT 58.771 50.000 6.04 4.50 38.67 3.41
3762 4077 0.606401 CTCCCAACGCAGACATGGTT 60.606 55.000 0.00 0.00 32.13 3.67
3779 4094 3.124560 GCGCTTAGTAAATCCAGGACTC 58.875 50.000 0.00 0.00 0.00 3.36
3782 4097 2.102588 GAGGCGCTTAGTAAATCCAGGA 59.897 50.000 7.64 0.00 0.00 3.86
3784 4099 3.460857 AGAGGCGCTTAGTAAATCCAG 57.539 47.619 7.64 0.00 0.00 3.86
3786 4101 3.312697 CCAAAGAGGCGCTTAGTAAATCC 59.687 47.826 7.64 0.00 35.24 3.01
3787 4102 4.034163 GTCCAAAGAGGCGCTTAGTAAATC 59.966 45.833 7.64 0.00 35.24 2.17
3788 4103 3.939592 GTCCAAAGAGGCGCTTAGTAAAT 59.060 43.478 7.64 0.00 35.24 1.40
3789 4104 3.007614 AGTCCAAAGAGGCGCTTAGTAAA 59.992 43.478 7.64 0.00 35.24 2.01
3790 4105 2.565834 AGTCCAAAGAGGCGCTTAGTAA 59.434 45.455 7.64 0.00 35.24 2.24
3791 4106 2.094182 CAGTCCAAAGAGGCGCTTAGTA 60.094 50.000 7.64 0.00 35.24 1.82
3792 4107 0.977395 AGTCCAAAGAGGCGCTTAGT 59.023 50.000 7.64 0.00 35.24 2.24
3793 4108 1.338200 ACAGTCCAAAGAGGCGCTTAG 60.338 52.381 7.64 0.00 35.24 2.18
3794 4109 0.685097 ACAGTCCAAAGAGGCGCTTA 59.315 50.000 7.64 0.00 35.24 3.09
3795 4110 0.685097 TACAGTCCAAAGAGGCGCTT 59.315 50.000 7.64 0.00 38.88 4.68
3796 4111 0.247736 CTACAGTCCAAAGAGGCGCT 59.752 55.000 7.64 0.00 37.29 5.92
3797 4112 0.741221 CCTACAGTCCAAAGAGGCGC 60.741 60.000 0.00 0.00 37.29 6.53
3798 4113 0.895530 TCCTACAGTCCAAAGAGGCG 59.104 55.000 0.00 0.00 37.29 5.52
3799 4114 3.636153 ATTCCTACAGTCCAAAGAGGC 57.364 47.619 0.00 0.00 37.29 4.70
3800 4115 5.810095 AGAAATTCCTACAGTCCAAAGAGG 58.190 41.667 0.00 0.00 39.47 3.69
3801 4116 7.065204 GCTTAGAAATTCCTACAGTCCAAAGAG 59.935 40.741 0.00 0.00 0.00 2.85
3802 4117 6.879458 GCTTAGAAATTCCTACAGTCCAAAGA 59.121 38.462 0.00 0.00 0.00 2.52
3803 4118 6.094186 GGCTTAGAAATTCCTACAGTCCAAAG 59.906 42.308 0.00 0.00 0.00 2.77
3804 4119 5.944007 GGCTTAGAAATTCCTACAGTCCAAA 59.056 40.000 0.00 0.00 0.00 3.28
3805 4120 5.250774 AGGCTTAGAAATTCCTACAGTCCAA 59.749 40.000 0.00 0.00 0.00 3.53
3806 4121 4.783227 AGGCTTAGAAATTCCTACAGTCCA 59.217 41.667 0.00 0.00 0.00 4.02
3807 4122 5.360649 AGGCTTAGAAATTCCTACAGTCC 57.639 43.478 0.00 0.00 0.00 3.85
3808 4123 7.362142 CCAAAAGGCTTAGAAATTCCTACAGTC 60.362 40.741 0.00 0.00 0.00 3.51
3809 4124 6.434340 CCAAAAGGCTTAGAAATTCCTACAGT 59.566 38.462 0.00 0.00 0.00 3.55
3810 4125 6.659242 TCCAAAAGGCTTAGAAATTCCTACAG 59.341 38.462 0.00 0.00 0.00 2.74
3811 4126 6.433093 GTCCAAAAGGCTTAGAAATTCCTACA 59.567 38.462 0.00 0.00 0.00 2.74
3812 4127 6.127703 GGTCCAAAAGGCTTAGAAATTCCTAC 60.128 42.308 0.00 0.00 0.00 3.18
3813 4128 5.949952 GGTCCAAAAGGCTTAGAAATTCCTA 59.050 40.000 0.00 0.00 0.00 2.94
3814 4129 4.772624 GGTCCAAAAGGCTTAGAAATTCCT 59.227 41.667 0.00 0.00 0.00 3.36
3818 4133 5.779771 TGAATGGTCCAAAAGGCTTAGAAAT 59.220 36.000 0.00 0.00 0.00 2.17
3827 4142 5.012239 TCTGAATCTGAATGGTCCAAAAGG 58.988 41.667 0.00 0.00 0.00 3.11
3843 4172 9.995003 ATGAGAAGTAATAGGAACATCTGAATC 57.005 33.333 0.00 0.00 0.00 2.52
3845 4174 9.823647 GAATGAGAAGTAATAGGAACATCTGAA 57.176 33.333 0.00 0.00 0.00 3.02
3872 4201 7.168219 GTGGGCTCATGTTTGATATTCCTATA 58.832 38.462 0.00 0.00 0.00 1.31
3881 4210 1.076024 AGGTGTGGGCTCATGTTTGAT 59.924 47.619 0.00 0.00 0.00 2.57
3884 4213 0.773644 AGAGGTGTGGGCTCATGTTT 59.226 50.000 0.00 0.00 0.00 2.83
3907 4236 4.591321 AGATGGTGCATAGGAGGAAAAA 57.409 40.909 0.00 0.00 0.00 1.94
3912 4241 3.808618 GCCTTTAGATGGTGCATAGGAGG 60.809 52.174 0.00 0.00 0.00 4.30
3958 4332 8.956426 CCTTGCCTACTATAAACAAGATTTCAA 58.044 33.333 0.00 0.00 40.06 2.69
3966 4340 6.001449 AGATGCCTTGCCTACTATAAACAA 57.999 37.500 0.00 0.00 0.00 2.83
3967 4341 5.630415 AGATGCCTTGCCTACTATAAACA 57.370 39.130 0.00 0.00 0.00 2.83
3968 4342 7.931948 TCTTTAGATGCCTTGCCTACTATAAAC 59.068 37.037 0.00 0.00 0.00 2.01
3969 4343 8.029782 TCTTTAGATGCCTTGCCTACTATAAA 57.970 34.615 0.00 0.00 0.00 1.40
3970 4344 7.612065 TCTTTAGATGCCTTGCCTACTATAA 57.388 36.000 0.00 0.00 0.00 0.98
3971 4345 7.798710 ATCTTTAGATGCCTTGCCTACTATA 57.201 36.000 0.00 0.00 32.68 1.31
3972 4346 6.694445 ATCTTTAGATGCCTTGCCTACTAT 57.306 37.500 0.00 0.00 32.68 2.12
3973 4347 6.327626 AGAATCTTTAGATGCCTTGCCTACTA 59.672 38.462 0.00 0.00 34.49 1.82
3974 4348 5.131809 AGAATCTTTAGATGCCTTGCCTACT 59.868 40.000 0.00 0.00 34.49 2.57
3975 4349 5.238214 CAGAATCTTTAGATGCCTTGCCTAC 59.762 44.000 0.00 0.00 34.49 3.18
3976 4350 5.371526 CAGAATCTTTAGATGCCTTGCCTA 58.628 41.667 0.00 0.00 34.49 3.93
3977 4351 4.205587 CAGAATCTTTAGATGCCTTGCCT 58.794 43.478 0.00 0.00 34.49 4.75
3978 4352 3.317430 CCAGAATCTTTAGATGCCTTGCC 59.683 47.826 0.00 0.00 34.49 4.52
3979 4353 3.317430 CCCAGAATCTTTAGATGCCTTGC 59.683 47.826 0.00 0.00 34.49 4.01
3980 4354 4.530875 ACCCAGAATCTTTAGATGCCTTG 58.469 43.478 0.00 0.00 34.49 3.61
3981 4355 4.870021 ACCCAGAATCTTTAGATGCCTT 57.130 40.909 0.00 0.00 34.49 4.35
3982 4356 4.870021 AACCCAGAATCTTTAGATGCCT 57.130 40.909 0.00 0.00 34.49 4.75
3983 4357 4.035675 CGAAACCCAGAATCTTTAGATGCC 59.964 45.833 0.00 0.00 34.49 4.40
3984 4358 4.496507 GCGAAACCCAGAATCTTTAGATGC 60.497 45.833 0.00 0.00 34.49 3.91
3985 4359 4.878397 AGCGAAACCCAGAATCTTTAGATG 59.122 41.667 0.00 0.00 34.49 2.90
3986 4360 5.104259 AGCGAAACCCAGAATCTTTAGAT 57.896 39.130 0.00 0.00 36.07 1.98
3987 4361 4.553330 AGCGAAACCCAGAATCTTTAGA 57.447 40.909 0.00 0.00 0.00 2.10
3988 4362 5.175859 TGTAGCGAAACCCAGAATCTTTAG 58.824 41.667 0.00 0.00 0.00 1.85
3989 4363 5.155278 TGTAGCGAAACCCAGAATCTTTA 57.845 39.130 0.00 0.00 0.00 1.85
3990 4364 4.015872 TGTAGCGAAACCCAGAATCTTT 57.984 40.909 0.00 0.00 0.00 2.52
3991 4365 3.695830 TGTAGCGAAACCCAGAATCTT 57.304 42.857 0.00 0.00 0.00 2.40
3992 4366 3.055094 ACATGTAGCGAAACCCAGAATCT 60.055 43.478 0.00 0.00 0.00 2.40
3993 4367 3.270877 ACATGTAGCGAAACCCAGAATC 58.729 45.455 0.00 0.00 0.00 2.52
3994 4368 3.270877 GACATGTAGCGAAACCCAGAAT 58.729 45.455 0.00 0.00 0.00 2.40
3995 4369 2.614481 GGACATGTAGCGAAACCCAGAA 60.614 50.000 0.00 0.00 0.00 3.02
3996 4370 1.066430 GGACATGTAGCGAAACCCAGA 60.066 52.381 0.00 0.00 0.00 3.86
3997 4371 1.066143 AGGACATGTAGCGAAACCCAG 60.066 52.381 0.00 0.00 0.00 4.45
3998 4372 0.981183 AGGACATGTAGCGAAACCCA 59.019 50.000 0.00 0.00 0.00 4.51
3999 4373 2.109425 AAGGACATGTAGCGAAACCC 57.891 50.000 0.00 0.00 0.00 4.11
4000 4374 5.813080 ATTTAAGGACATGTAGCGAAACC 57.187 39.130 0.00 0.00 0.00 3.27
4001 4375 7.298507 TGTATTTAAGGACATGTAGCGAAAC 57.701 36.000 0.00 0.00 0.00 2.78
4002 4376 7.915508 CATGTATTTAAGGACATGTAGCGAAA 58.084 34.615 17.51 0.00 45.16 3.46
4003 4377 7.477144 CATGTATTTAAGGACATGTAGCGAA 57.523 36.000 17.51 0.00 45.16 4.70
4020 4394 9.466497 CCAATTGGCCTACTTATATCATGTATT 57.534 33.333 12.53 0.00 0.00 1.89
4021 4395 8.835734 TCCAATTGGCCTACTTATATCATGTAT 58.164 33.333 20.33 0.00 34.44 2.29
4022 4396 8.213489 TCCAATTGGCCTACTTATATCATGTA 57.787 34.615 20.33 0.00 34.44 2.29
4023 4397 7.090319 TCCAATTGGCCTACTTATATCATGT 57.910 36.000 20.33 0.00 34.44 3.21
4024 4398 8.585471 ATTCCAATTGGCCTACTTATATCATG 57.415 34.615 20.33 0.00 34.44 3.07
4025 4399 9.605951 AAATTCCAATTGGCCTACTTATATCAT 57.394 29.630 20.33 0.00 34.44 2.45
4026 4400 9.432982 AAAATTCCAATTGGCCTACTTATATCA 57.567 29.630 20.33 0.00 34.44 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.