Multiple sequence alignment - TraesCS3A01G341700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G341700 chr3A 100.000 4817 0 0 1 4817 588932879 588937695 0.000000e+00 8896.0
1 TraesCS3A01G341700 chr3A 86.200 1058 96 18 2639 3679 64325709 64324685 0.000000e+00 1099.0
2 TraesCS3A01G341700 chr3A 78.631 833 93 41 1087 1902 64326468 64325704 1.570000e-129 473.0
3 TraesCS3A01G341700 chr3A 81.849 292 32 13 3726 4012 64320007 64319732 4.850000e-55 226.0
4 TraesCS3A01G341700 chr3D 88.573 2529 151 68 614 3061 447559886 447562357 0.000000e+00 2942.0
5 TraesCS3A01G341700 chr3D 97.213 574 16 0 3137 3710 447562403 447562976 0.000000e+00 972.0
6 TraesCS3A01G341700 chr3D 92.600 500 21 9 3686 4170 447563038 447563536 0.000000e+00 704.0
7 TraesCS3A01G341700 chr3D 87.805 615 56 11 3095 3704 52812327 52811727 0.000000e+00 702.0
8 TraesCS3A01G341700 chr3D 88.428 579 51 7 4205 4777 447563536 447564104 0.000000e+00 684.0
9 TraesCS3A01G341700 chr3D 84.581 454 29 18 112 545 447559455 447559887 3.470000e-111 412.0
10 TraesCS3A01G341700 chr3D 96.875 128 4 0 1087 1214 52816697 52816570 1.050000e-51 215.0
11 TraesCS3A01G341700 chr3B 83.455 2460 255 75 1607 4013 83473415 83471055 0.000000e+00 2148.0
12 TraesCS3A01G341700 chr3B 87.507 1689 102 67 10 1629 586694090 586695738 0.000000e+00 1849.0
13 TraesCS3A01G341700 chr3B 89.512 963 66 26 2115 3061 586696245 586697188 0.000000e+00 1186.0
14 TraesCS3A01G341700 chr3B 82.623 1243 140 45 2889 4110 83468447 83467260 0.000000e+00 1029.0
15 TraesCS3A01G341700 chr3B 94.516 620 31 2 3095 3713 586697192 586697809 0.000000e+00 953.0
16 TraesCS3A01G341700 chr3B 90.855 503 37 2 4277 4773 586698473 586698972 0.000000e+00 665.0
17 TraesCS3A01G341700 chr3B 93.864 440 18 6 3686 4117 586697866 586698304 0.000000e+00 654.0
18 TraesCS3A01G341700 chr3B 89.813 481 31 12 1572 2048 586695749 586696215 6.900000e-168 601.0
19 TraesCS3A01G341700 chr3B 82.444 450 39 19 1088 1517 83473851 83473422 1.650000e-94 357.0
20 TraesCS3A01G341700 chr3B 100.000 28 0 0 3686 3713 586697810 586697837 9.000000e-03 52.8
21 TraesCS3A01G341700 chr3B 100.000 28 0 0 3686 3713 586697838 586697865 9.000000e-03 52.8
22 TraesCS3A01G341700 chrUn 87.805 615 56 11 3095 3704 304503218 304503818 0.000000e+00 702.0
23 TraesCS3A01G341700 chr1D 78.477 683 109 25 3155 3821 6219575 6220235 3.470000e-111 412.0
24 TraesCS3A01G341700 chr1D 87.692 130 15 1 1069 1198 6217943 6218071 3.000000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G341700 chr3A 588932879 588937695 4816 False 8896.0 8896 100.000000 1 4817 1 chr3A.!!$F1 4816
1 TraesCS3A01G341700 chr3A 64324685 64326468 1783 True 786.0 1099 82.415500 1087 3679 2 chr3A.!!$R2 2592
2 TraesCS3A01G341700 chr3D 447559455 447564104 4649 False 1142.8 2942 90.279000 112 4777 5 chr3D.!!$F1 4665
3 TraesCS3A01G341700 chr3D 52811727 52812327 600 True 702.0 702 87.805000 3095 3704 1 chr3D.!!$R1 609
4 TraesCS3A01G341700 chr3B 83467260 83473851 6591 True 1178.0 2148 82.840667 1088 4110 3 chr3B.!!$R1 3022
5 TraesCS3A01G341700 chr3B 586694090 586698972 4882 False 751.7 1849 93.258375 10 4773 8 chr3B.!!$F1 4763
6 TraesCS3A01G341700 chrUn 304503218 304503818 600 False 702.0 702 87.805000 3095 3704 1 chrUn.!!$F1 609
7 TraesCS3A01G341700 chr1D 6217943 6220235 2292 False 281.0 412 83.084500 1069 3821 2 chr1D.!!$F1 2752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 119 0.030092 CCCCTTCCCCTATCCACTGA 60.030 60.000 0.0 0.0 0.0 3.41 F
784 885 0.035458 AGACGGCTGGAGGAAAACTG 59.965 55.000 0.0 0.0 0.0 3.16 F
1519 2105 0.478072 AGCAAGTCCCACACATTCCA 59.522 50.000 0.0 0.0 0.0 3.53 F
1524 2110 1.076024 AGTCCCACACATTCCATTGCT 59.924 47.619 0.0 0.0 0.0 3.91 F
2614 3661 0.109781 CTCCACCATTTTGTTCCGCG 60.110 55.000 0.0 0.0 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1322 1895 0.312102 AGAAAGAAACAAGGCTGCGC 59.688 50.0 0.00 0.0 0.00 6.09 R
1678 2341 0.667487 AGCGTCACAGTCATCAACCG 60.667 55.0 0.00 0.0 0.00 4.44 R
2604 3645 0.796312 GCAGAAGATCGCGGAACAAA 59.204 50.0 6.13 0.0 0.00 2.83 R
2857 3917 2.289945 GGCTGTCAGGAAGTTCACAGAT 60.290 50.0 20.39 0.0 38.90 2.90 R
4208 9145 0.100325 CACTGTTGGCGAGTGCAAAA 59.900 50.0 0.00 0.0 45.35 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.605710 CCCACGCCATCATCATTCTTC 59.394 52.381 0.00 0.00 0.00 2.87
81 82 2.003247 TCCCTTCTACTCCTCCTCCT 57.997 55.000 0.00 0.00 0.00 3.69
82 83 1.854280 TCCCTTCTACTCCTCCTCCTC 59.146 57.143 0.00 0.00 0.00 3.71
86 87 1.000041 TCTACTCCTCCTCCTCCCCC 61.000 65.000 0.00 0.00 0.00 5.40
101 117 1.321943 CCCCCTTCCCCTATCCACT 59.678 63.158 0.00 0.00 0.00 4.00
103 119 0.030092 CCCCTTCCCCTATCCACTGA 60.030 60.000 0.00 0.00 0.00 3.41
125 144 4.935702 ACACACACACCTCATTTGAAATG 58.064 39.130 11.54 11.54 0.00 2.32
139 158 7.717568 TCATTTGAAATGGAAACCGTCTTTTA 58.282 30.769 17.01 0.00 0.00 1.52
260 287 3.299977 CATGGGATGGCCATGGCG 61.300 66.667 29.90 10.13 40.70 5.69
262 289 3.378472 ATGGGATGGCCATGGCGTT 62.378 57.895 29.90 19.69 43.06 4.84
266 293 1.434696 GATGGCCATGGCGTTCTTG 59.565 57.895 29.90 0.00 43.06 3.02
275 302 2.174349 GCGTTCTTGAAGCCAGCG 59.826 61.111 0.00 0.00 0.00 5.18
276 303 2.863153 CGTTCTTGAAGCCAGCGG 59.137 61.111 0.00 0.00 0.00 5.52
363 398 1.477558 CCAGGGAGAGAGAGAGAGAGC 60.478 61.905 0.00 0.00 0.00 4.09
364 399 0.846693 AGGGAGAGAGAGAGAGAGCC 59.153 60.000 0.00 0.00 0.00 4.70
371 412 3.389329 AGAGAGAGAGAGAGCCAGAGTAG 59.611 52.174 0.00 0.00 0.00 2.57
374 415 4.101119 AGAGAGAGAGAGCCAGAGTAGTAC 59.899 50.000 0.00 0.00 0.00 2.73
547 591 1.606480 CCTCGCACTTCTTCTTGCAGA 60.606 52.381 0.00 0.00 38.76 4.26
583 633 3.646715 CTCCACCCCGAGCCCAAA 61.647 66.667 0.00 0.00 0.00 3.28
618 668 4.738998 CCACAATCCTGCGCCCCA 62.739 66.667 4.18 0.00 0.00 4.96
755 856 1.136169 GTTCCCAACAATCACGTACGC 60.136 52.381 16.72 0.00 0.00 4.42
784 885 0.035458 AGACGGCTGGAGGAAAACTG 59.965 55.000 0.00 0.00 0.00 3.16
825 926 1.291877 TGCTCTTTCCTTTCGCGAGC 61.292 55.000 9.59 6.57 45.39 5.03
832 933 2.815647 CTTTCGCGAGCCTCCACC 60.816 66.667 9.59 0.00 0.00 4.61
902 1003 4.838152 CACGGCACCAGGATCCCG 62.838 72.222 8.55 6.19 45.80 5.14
946 1047 1.409381 CCCATCCTTCCTGCCTCTTTC 60.409 57.143 0.00 0.00 0.00 2.62
1244 1810 1.672030 CACATGCTTGACGGCTCCA 60.672 57.895 6.60 0.00 0.00 3.86
1255 1821 2.832129 TGACGGCTCCATCTACTCTTTT 59.168 45.455 0.00 0.00 0.00 2.27
1298 1864 5.872617 CGAGTAAAAGTCTCTCTCTCTCTCA 59.127 44.000 0.00 0.00 0.00 3.27
1299 1865 6.370442 CGAGTAAAAGTCTCTCTCTCTCTCAA 59.630 42.308 0.00 0.00 0.00 3.02
1300 1866 7.413000 CGAGTAAAAGTCTCTCTCTCTCTCAAG 60.413 44.444 0.00 0.00 0.00 3.02
1302 1868 5.964958 AAAGTCTCTCTCTCTCTCAAGTG 57.035 43.478 0.00 0.00 0.00 3.16
1305 1871 3.127548 GTCTCTCTCTCTCTCAAGTGCTG 59.872 52.174 0.00 0.00 0.00 4.41
1317 1890 6.375455 TCTCTCAAGTGCTGTTCTTTTCTTTT 59.625 34.615 0.00 0.00 0.00 2.27
1322 1895 6.149129 AGTGCTGTTCTTTTCTTTTAAGGG 57.851 37.500 0.00 0.00 0.00 3.95
1388 1964 4.978083 TTGTCGGATCTGTAGAAGTACC 57.022 45.455 0.42 0.00 0.00 3.34
1517 2103 1.896220 TGAGCAAGTCCCACACATTC 58.104 50.000 0.00 0.00 0.00 2.67
1519 2105 0.478072 AGCAAGTCCCACACATTCCA 59.522 50.000 0.00 0.00 0.00 3.53
1521 2107 1.895131 GCAAGTCCCACACATTCCATT 59.105 47.619 0.00 0.00 0.00 3.16
1522 2108 2.353011 GCAAGTCCCACACATTCCATTG 60.353 50.000 0.00 0.00 0.00 2.82
1524 2110 1.076024 AGTCCCACACATTCCATTGCT 59.924 47.619 0.00 0.00 0.00 3.91
1525 2111 1.203052 GTCCCACACATTCCATTGCTG 59.797 52.381 0.00 0.00 0.00 4.41
1538 2126 6.403866 TTCCATTGCTGTTCTTGTTAATGT 57.596 33.333 0.00 0.00 0.00 2.71
1612 2268 4.406456 ACCATTTCACTTTGTCCATGCTA 58.594 39.130 0.00 0.00 0.00 3.49
1629 2285 3.596214 TGCTAAGTAGGTGCTTAGTTGC 58.404 45.455 14.10 4.38 45.79 4.17
1643 2299 1.683943 AGTTGCGGCTATGCATCATT 58.316 45.000 0.19 0.00 45.78 2.57
1743 2406 1.464608 GATGTGGTTCATGGTGTGTCG 59.535 52.381 0.00 0.00 36.83 4.35
1785 2448 5.012251 TGCAGGGTACTGTTAATGTGTCTTA 59.988 40.000 0.00 0.00 46.62 2.10
1869 2536 6.732154 ACAAGACATTTGAGAGATTGTGTTG 58.268 36.000 9.40 9.40 44.39 3.33
1871 2538 6.551385 AGACATTTGAGAGATTGTGTTGTC 57.449 37.500 0.00 0.00 33.03 3.18
1887 2554 1.927487 TGTCAGGCCATTGAAAGCAT 58.073 45.000 5.01 0.00 0.00 3.79
1897 2564 4.644685 GCCATTGAAAGCATTCCCTTACTA 59.355 41.667 0.00 0.00 34.49 1.82
1968 2638 3.248602 ACAAGAGCAAAAGCTCAACTACG 59.751 43.478 18.46 3.96 39.13 3.51
1969 2639 3.386768 AGAGCAAAAGCTCAACTACGA 57.613 42.857 18.46 0.00 39.13 3.43
2009 2681 9.899226 AAATACATAACTGCAAGAAAGAAGAAC 57.101 29.630 0.00 0.00 37.43 3.01
2029 2701 2.099098 ACGAAAAGGGCAAAGAACACAG 59.901 45.455 0.00 0.00 0.00 3.66
2110 2796 4.761739 ACAACTACAGCACTGCATTGTATT 59.238 37.500 5.89 0.00 33.96 1.89
2112 2798 5.300969 ACTACAGCACTGCATTGTATTTG 57.699 39.130 5.89 2.91 0.00 2.32
2168 2875 1.869132 CTTTGCCAGCTTTTTCTTGCC 59.131 47.619 0.00 0.00 0.00 4.52
2216 2923 2.484264 GCTTGTTGCGAAACCATACTCT 59.516 45.455 3.18 0.00 0.00 3.24
2252 2959 2.846206 TCCATGCTCCCTGTGAAAGTAT 59.154 45.455 0.00 0.00 0.00 2.12
2253 2960 4.037222 TCCATGCTCCCTGTGAAAGTATA 58.963 43.478 0.00 0.00 0.00 1.47
2254 2961 4.473196 TCCATGCTCCCTGTGAAAGTATAA 59.527 41.667 0.00 0.00 0.00 0.98
2255 2962 5.045213 TCCATGCTCCCTGTGAAAGTATAAA 60.045 40.000 0.00 0.00 0.00 1.40
2256 2963 5.829924 CCATGCTCCCTGTGAAAGTATAAAT 59.170 40.000 0.00 0.00 0.00 1.40
2257 2964 6.322201 CCATGCTCCCTGTGAAAGTATAAATT 59.678 38.462 0.00 0.00 0.00 1.82
2258 2965 7.420800 CATGCTCCCTGTGAAAGTATAAATTC 58.579 38.462 0.00 0.00 0.00 2.17
2260 2967 7.175104 TGCTCCCTGTGAAAGTATAAATTCTT 58.825 34.615 0.00 0.00 0.00 2.52
2262 2969 7.336931 GCTCCCTGTGAAAGTATAAATTCTTCA 59.663 37.037 1.74 0.00 0.00 3.02
2263 2970 8.792830 TCCCTGTGAAAGTATAAATTCTTCAG 57.207 34.615 12.19 12.19 33.04 3.02
2265 2972 9.014297 CCCTGTGAAAGTATAAATTCTTCAGTT 57.986 33.333 14.90 0.00 32.26 3.16
2345 3052 1.999634 AACAACAGGCTGGGCTCACT 62.000 55.000 20.34 0.00 0.00 3.41
2353 3061 1.748122 CTGGGCTCACTCCATGCAC 60.748 63.158 0.00 0.00 33.29 4.57
2394 3102 7.400052 TGCTCTAGGTTATATTCATGGCTATGA 59.600 37.037 8.93 8.93 41.44 2.15
2401 3109 7.094634 GGTTATATTCATGGCTATGACCTTGTG 60.095 40.741 12.90 0.00 42.79 3.33
2471 3488 5.219633 GTGGGCAGTATGTGTTAAGTTTTG 58.780 41.667 0.00 0.00 39.31 2.44
2473 3490 5.009210 TGGGCAGTATGTGTTAAGTTTTGTC 59.991 40.000 0.00 0.00 39.31 3.18
2547 3585 6.479990 GCTGCAAAATAAATGAAATAGGGACC 59.520 38.462 0.00 0.00 0.00 4.46
2604 3645 0.409092 TTCCCATGTGCTCCACCATT 59.591 50.000 0.00 0.00 32.73 3.16
2614 3661 0.109781 CTCCACCATTTTGTTCCGCG 60.110 55.000 0.00 0.00 0.00 6.46
2660 3711 2.366533 AGCTTGACATGCAGGAATCTG 58.633 47.619 4.84 0.00 43.64 2.90
2717 3773 6.404734 CCCAACACTAATTCTTATTCTGCCAC 60.405 42.308 0.00 0.00 0.00 5.01
2838 3897 8.419076 TCCTTCAAAACTTAAGCATGTTTTTC 57.581 30.769 1.29 0.00 42.29 2.29
2857 3917 6.767524 TTTTCTTCTTTCCAGTTAGCAACA 57.232 33.333 0.00 0.00 0.00 3.33
2870 3930 4.757149 AGTTAGCAACATCTGTGAACTTCC 59.243 41.667 0.00 0.00 31.71 3.46
2955 4021 8.519526 CCACTAAAAGATTGTGCTTTATGGTAA 58.480 33.333 0.00 0.00 37.12 2.85
2960 4026 8.409358 AAAGATTGTGCTTTATGGTAAACTCT 57.591 30.769 0.00 0.00 36.39 3.24
2962 4028 7.168219 AGATTGTGCTTTATGGTAAACTCTGA 58.832 34.615 0.00 0.00 0.00 3.27
2968 4034 7.591426 GTGCTTTATGGTAAACTCTGAAAACAG 59.409 37.037 0.00 0.00 0.00 3.16
3014 4080 4.511527 AGATATGCTCCTGAAACACAGTG 58.488 43.478 0.00 0.00 44.40 3.66
3019 4088 0.813610 TCCTGAAACACAGTGTGCGG 60.814 55.000 23.21 14.76 44.40 5.69
3020 4089 1.648720 CTGAAACACAGTGTGCGGG 59.351 57.895 23.21 5.65 41.30 6.13
3061 4130 7.519032 TTTTTGGTTTGGTCTATTCTACTGG 57.481 36.000 0.00 0.00 0.00 4.00
3066 4135 5.411669 GGTTTGGTCTATTCTACTGGTGTTG 59.588 44.000 0.00 0.00 0.00 3.33
3068 4137 5.401531 TGGTCTATTCTACTGGTGTTGTC 57.598 43.478 0.00 0.00 0.00 3.18
3089 4158 5.988310 TCGATAGAACAGTTAGTTTCCCA 57.012 39.130 0.00 0.00 46.15 4.37
3091 4160 6.161381 TCGATAGAACAGTTAGTTTCCCAAC 58.839 40.000 0.00 0.00 46.15 3.77
3312 4385 6.264067 AGCAAAAGATAAAGGATATCACAGCC 59.736 38.462 4.83 0.00 0.00 4.85
3684 8481 4.503910 TGTCGAATCCAAGTATGTTCAGG 58.496 43.478 0.00 0.00 0.00 3.86
3723 8606 7.390823 TCAGTAGACAGTATAGCTCTATGGAG 58.609 42.308 0.86 0.86 42.18 3.86
3749 8632 7.157347 GCCTACTGAATCTGATATGATGTTGA 58.843 38.462 0.00 0.00 0.00 3.18
3881 8767 5.359860 AGTTTGCCTTAGTGTAAAAAGCAGT 59.640 36.000 0.00 0.00 0.00 4.40
4149 9086 2.102578 CCAGGCCTCCGAAAAATCAAT 58.897 47.619 0.00 0.00 0.00 2.57
4150 9087 2.497273 CCAGGCCTCCGAAAAATCAATT 59.503 45.455 0.00 0.00 0.00 2.32
4171 9108 6.715347 ATTGAGTTTCCAGCCAATATAACC 57.285 37.500 0.00 0.00 0.00 2.85
4172 9109 5.450818 TGAGTTTCCAGCCAATATAACCT 57.549 39.130 0.00 0.00 0.00 3.50
4174 9111 6.964464 TGAGTTTCCAGCCAATATAACCTTA 58.036 36.000 0.00 0.00 0.00 2.69
4177 9114 5.646692 TTCCAGCCAATATAACCTTAGCT 57.353 39.130 0.00 0.00 0.00 3.32
4191 9128 6.835819 AACCTTAGCTGAAAAGAATTACCC 57.164 37.500 0.00 0.00 0.00 3.69
4192 9129 5.262009 ACCTTAGCTGAAAAGAATTACCCC 58.738 41.667 0.00 0.00 0.00 4.95
4202 9139 6.723977 TGAAAAGAATTACCCCAGTTAGCATT 59.276 34.615 0.00 0.00 0.00 3.56
4208 9145 3.959495 ACCCCAGTTAGCATTCATCAT 57.041 42.857 0.00 0.00 0.00 2.45
4231 9168 1.835483 GCACTCGCCAACAGTGTCTG 61.835 60.000 0.00 0.00 42.89 3.51
4237 9174 0.675633 GCCAACAGTGTCTGCCAAAT 59.324 50.000 0.00 0.00 34.37 2.32
4246 9183 1.004277 TGTCTGCCAAATACACCTCCC 59.996 52.381 0.00 0.00 0.00 4.30
4249 9186 2.026641 CTGCCAAATACACCTCCCATG 58.973 52.381 0.00 0.00 0.00 3.66
4262 9199 2.158608 CCTCCCATGATAGTCAAACCCC 60.159 54.545 0.00 0.00 0.00 4.95
4268 9205 4.141413 CCATGATAGTCAAACCCCTGATCA 60.141 45.833 0.00 0.00 0.00 2.92
4270 9207 5.296151 TGATAGTCAAACCCCTGATCATC 57.704 43.478 0.00 0.00 0.00 2.92
4271 9208 4.721274 TGATAGTCAAACCCCTGATCATCA 59.279 41.667 0.00 0.00 31.33 3.07
4272 9209 5.191522 TGATAGTCAAACCCCTGATCATCAA 59.808 40.000 0.00 0.00 31.09 2.57
4273 9210 4.387026 AGTCAAACCCCTGATCATCAAA 57.613 40.909 0.00 0.00 0.00 2.69
4276 9213 3.826157 TCAAACCCCTGATCATCAAACAC 59.174 43.478 0.00 0.00 0.00 3.32
4312 9249 4.021104 TCAACAACAACACACCCATTTCAA 60.021 37.500 0.00 0.00 0.00 2.69
4313 9250 3.855858 ACAACAACACACCCATTTCAAC 58.144 40.909 0.00 0.00 0.00 3.18
4314 9251 3.259374 ACAACAACACACCCATTTCAACA 59.741 39.130 0.00 0.00 0.00 3.33
4321 9258 4.832266 ACACACCCATTTCAACATGTACAT 59.168 37.500 1.41 1.41 0.00 2.29
4386 9329 3.716006 GCAAAGAGCGCGACAGCA 61.716 61.111 12.10 0.00 45.49 4.41
4404 9347 1.162698 CACTAACGAGGAGTCACCGA 58.837 55.000 9.85 0.00 44.74 4.69
4495 9438 3.259902 GGTGGTCGTTATGAAGGAGTTC 58.740 50.000 0.00 0.00 0.00 3.01
4510 9453 5.923733 AGGAGTTCGATGTAGATTGAGTT 57.076 39.130 0.00 0.00 0.00 3.01
4513 9456 6.039941 AGGAGTTCGATGTAGATTGAGTTAGG 59.960 42.308 0.00 0.00 0.00 2.69
4555 9498 0.482887 TGGAGGTCACAGACAGGAGA 59.517 55.000 0.00 0.00 33.68 3.71
4576 9519 0.459934 CTTCTCCTTCAGGCAGAGCG 60.460 60.000 0.00 0.00 34.44 5.03
4579 9522 1.670949 CTCCTTCAGGCAGAGCGCTA 61.671 60.000 11.50 0.00 41.91 4.26
4601 9544 0.809385 GATGTCGTCGAGTTCCCTGA 59.191 55.000 0.00 0.00 0.00 3.86
4608 9551 1.067776 GTCGAGTTCCCTGACGATGTT 60.068 52.381 0.00 0.00 37.14 2.71
4631 9574 4.789075 TGTAAGGCCTCGCGTCGC 62.789 66.667 5.23 7.29 0.00 5.19
4633 9576 4.189188 TAAGGCCTCGCGTCGCTC 62.189 66.667 16.36 9.36 0.00 5.03
4684 9627 1.002087 AGGAACTTCGTGGCGAATTCT 59.998 47.619 3.52 0.00 44.85 2.40
4685 9628 1.393883 GGAACTTCGTGGCGAATTCTC 59.606 52.381 3.52 0.00 44.85 2.87
4725 9668 1.327764 GCTGTCGATGATTCCGGAAAC 59.672 52.381 23.08 19.76 0.00 2.78
4744 9687 1.207329 ACGTCTCCTGATTGGTAAGCC 59.793 52.381 0.00 0.00 37.07 4.35
4759 9702 2.801077 AAGCCGCCTTTACCTACATT 57.199 45.000 0.00 0.00 0.00 2.71
4760 9703 2.038387 AGCCGCCTTTACCTACATTG 57.962 50.000 0.00 0.00 0.00 2.82
4783 9726 6.349300 TGAGGATCAGGTTAAATAGTTCAGC 58.651 40.000 0.00 0.00 42.56 4.26
4784 9727 6.070251 TGAGGATCAGGTTAAATAGTTCAGCA 60.070 38.462 0.00 0.00 42.56 4.41
4785 9728 6.352516 AGGATCAGGTTAAATAGTTCAGCAG 58.647 40.000 0.00 0.00 0.00 4.24
4786 9729 6.069963 AGGATCAGGTTAAATAGTTCAGCAGT 60.070 38.462 0.00 0.00 0.00 4.40
4787 9730 7.125811 AGGATCAGGTTAAATAGTTCAGCAGTA 59.874 37.037 0.00 0.00 0.00 2.74
4788 9731 7.769044 GGATCAGGTTAAATAGTTCAGCAGTAA 59.231 37.037 0.00 0.00 0.00 2.24
4789 9732 9.162764 GATCAGGTTAAATAGTTCAGCAGTAAA 57.837 33.333 0.00 0.00 0.00 2.01
4790 9733 8.547967 TCAGGTTAAATAGTTCAGCAGTAAAG 57.452 34.615 0.00 0.00 0.00 1.85
4791 9734 8.154856 TCAGGTTAAATAGTTCAGCAGTAAAGT 58.845 33.333 0.00 0.00 0.00 2.66
4792 9735 8.784043 CAGGTTAAATAGTTCAGCAGTAAAGTT 58.216 33.333 0.00 0.00 0.00 2.66
4793 9736 9.000486 AGGTTAAATAGTTCAGCAGTAAAGTTC 58.000 33.333 0.00 0.00 0.00 3.01
4794 9737 9.000486 GGTTAAATAGTTCAGCAGTAAAGTTCT 58.000 33.333 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.045781 ATGGCGTGGGCATGTGGA 62.046 61.111 3.70 0.00 46.89 4.02
6 7 1.076850 AATGATGATGGCGTGGGCA 60.077 52.632 0.00 0.00 43.52 5.36
7 8 0.820891 AGAATGATGATGGCGTGGGC 60.821 55.000 0.00 0.00 38.90 5.36
8 9 1.605710 GAAGAATGATGATGGCGTGGG 59.394 52.381 0.00 0.00 0.00 4.61
9 10 1.605710 GGAAGAATGATGATGGCGTGG 59.394 52.381 0.00 0.00 0.00 4.94
10 11 2.569059 AGGAAGAATGATGATGGCGTG 58.431 47.619 0.00 0.00 0.00 5.34
11 12 3.209410 GAAGGAAGAATGATGATGGCGT 58.791 45.455 0.00 0.00 0.00 5.68
12 13 2.551459 GGAAGGAAGAATGATGATGGCG 59.449 50.000 0.00 0.00 0.00 5.69
13 14 2.889678 GGGAAGGAAGAATGATGATGGC 59.110 50.000 0.00 0.00 0.00 4.40
14 15 3.139770 AGGGGAAGGAAGAATGATGATGG 59.860 47.826 0.00 0.00 0.00 3.51
28 29 2.990479 CGTGAAGGGAGGGGAAGG 59.010 66.667 0.00 0.00 0.00 3.46
86 87 1.486726 GTGTCAGTGGATAGGGGAAGG 59.513 57.143 0.00 0.00 0.00 3.46
87 88 2.093447 GTGTGTCAGTGGATAGGGGAAG 60.093 54.545 0.00 0.00 0.00 3.46
88 89 1.906574 GTGTGTCAGTGGATAGGGGAA 59.093 52.381 0.00 0.00 0.00 3.97
89 90 1.203250 TGTGTGTCAGTGGATAGGGGA 60.203 52.381 0.00 0.00 0.00 4.81
91 92 1.623311 TGTGTGTGTCAGTGGATAGGG 59.377 52.381 0.00 0.00 0.00 3.53
92 93 2.612972 GGTGTGTGTGTCAGTGGATAGG 60.613 54.545 0.00 0.00 0.00 2.57
93 94 2.300152 AGGTGTGTGTGTCAGTGGATAG 59.700 50.000 0.00 0.00 0.00 2.08
94 95 2.299013 GAGGTGTGTGTGTCAGTGGATA 59.701 50.000 0.00 0.00 0.00 2.59
95 96 1.070758 GAGGTGTGTGTGTCAGTGGAT 59.929 52.381 0.00 0.00 0.00 3.41
96 97 0.464036 GAGGTGTGTGTGTCAGTGGA 59.536 55.000 0.00 0.00 0.00 4.02
97 98 0.177836 TGAGGTGTGTGTGTCAGTGG 59.822 55.000 0.00 0.00 0.00 4.00
101 117 3.274095 TCAAATGAGGTGTGTGTGTCA 57.726 42.857 0.00 0.00 0.00 3.58
103 119 4.202141 CCATTTCAAATGAGGTGTGTGTGT 60.202 41.667 11.98 0.00 0.00 3.72
125 144 3.276857 GGGGAGATAAAAGACGGTTTCC 58.723 50.000 0.00 0.00 0.00 3.13
139 158 1.771255 GCAAGATGTAGGTGGGGAGAT 59.229 52.381 0.00 0.00 0.00 2.75
229 256 2.125552 CATGCACGGCCGAGAGAA 60.126 61.111 35.90 16.52 0.00 2.87
248 275 1.031571 TCAAGAACGCCATGGCCATC 61.032 55.000 30.79 26.22 37.98 3.51
260 287 2.563427 GCCGCTGGCTTCAAGAAC 59.437 61.111 11.61 0.00 46.69 3.01
371 412 6.654582 GGCAGGGAACTATACTCTAGTAGTAC 59.345 46.154 0.00 0.00 40.68 2.73
374 415 5.708230 CAGGCAGGGAACTATACTCTAGTAG 59.292 48.000 0.00 0.00 40.21 2.57
462 503 3.395941 AGAAGAAGAAGAAGGGGCAGAAA 59.604 43.478 0.00 0.00 0.00 2.52
470 511 3.258228 GAGCCGAAGAAGAAGAAGAAGG 58.742 50.000 0.00 0.00 0.00 3.46
704 785 1.741770 CGGAGAACTTTGGCGGAGG 60.742 63.158 0.00 0.00 0.00 4.30
705 786 1.741770 CCGGAGAACTTTGGCGGAG 60.742 63.158 0.00 0.00 0.00 4.63
706 787 2.345991 CCGGAGAACTTTGGCGGA 59.654 61.111 0.00 0.00 0.00 5.54
707 788 3.431725 GCCGGAGAACTTTGGCGG 61.432 66.667 5.05 0.00 37.81 6.13
710 791 1.600636 TGCTGCCGGAGAACTTTGG 60.601 57.895 5.05 0.00 0.00 3.28
711 792 1.165907 TGTGCTGCCGGAGAACTTTG 61.166 55.000 5.05 0.00 30.16 2.77
712 793 1.148273 TGTGCTGCCGGAGAACTTT 59.852 52.632 5.05 0.00 30.16 2.66
713 794 1.598130 GTGTGCTGCCGGAGAACTT 60.598 57.895 5.05 0.00 30.16 2.66
714 795 2.031163 GTGTGCTGCCGGAGAACT 59.969 61.111 5.05 0.00 30.16 3.01
715 796 1.569479 GAAGTGTGCTGCCGGAGAAC 61.569 60.000 5.05 5.25 0.00 3.01
716 797 1.301716 GAAGTGTGCTGCCGGAGAA 60.302 57.895 5.05 0.00 0.00 2.87
717 798 2.343758 GAAGTGTGCTGCCGGAGA 59.656 61.111 5.05 0.00 0.00 3.71
784 885 2.590859 GGATACGGCGCCTTTCCC 60.591 66.667 26.68 16.42 0.00 3.97
856 957 1.887707 GAAATCCGCTCGGCCGATT 60.888 57.895 31.19 19.33 37.90 3.34
902 1003 7.226720 GGGATTTTTGGAAAGAAAGAAAAGGAC 59.773 37.037 0.00 0.00 0.00 3.85
1244 1810 8.779354 ATTTACGCAGAAAGAAAAGAGTAGAT 57.221 30.769 0.00 0.00 0.00 1.98
1255 1821 4.927425 ACTCGCTTTATTTACGCAGAAAGA 59.073 37.500 0.00 0.00 31.83 2.52
1298 1864 6.573434 CCCTTAAAAGAAAAGAACAGCACTT 58.427 36.000 0.00 0.00 0.00 3.16
1299 1865 5.451937 GCCCTTAAAAGAAAAGAACAGCACT 60.452 40.000 0.00 0.00 0.00 4.40
1300 1866 4.745125 GCCCTTAAAAGAAAAGAACAGCAC 59.255 41.667 0.00 0.00 0.00 4.40
1302 1868 3.981416 CGCCCTTAAAAGAAAAGAACAGC 59.019 43.478 0.00 0.00 0.00 4.40
1305 1871 3.972403 TGCGCCCTTAAAAGAAAAGAAC 58.028 40.909 4.18 0.00 0.00 3.01
1322 1895 0.312102 AGAAAGAAACAAGGCTGCGC 59.688 50.000 0.00 0.00 0.00 6.09
1358 1934 0.400213 AGATCCGACAAAGCCCACAA 59.600 50.000 0.00 0.00 0.00 3.33
1359 1935 0.321564 CAGATCCGACAAAGCCCACA 60.322 55.000 0.00 0.00 0.00 4.17
1360 1936 0.321653 ACAGATCCGACAAAGCCCAC 60.322 55.000 0.00 0.00 0.00 4.61
1388 1964 9.027129 CATTCCATCAGCAAATAACAAAGTATG 57.973 33.333 0.00 0.00 0.00 2.39
1401 1981 6.484364 TCATACTACTCATTCCATCAGCAA 57.516 37.500 0.00 0.00 0.00 3.91
1402 1982 6.676990 ATCATACTACTCATTCCATCAGCA 57.323 37.500 0.00 0.00 0.00 4.41
1458 2044 4.033358 CAGCTAAAAGCAGTATTCTCACCG 59.967 45.833 1.22 0.00 45.56 4.94
1506 2092 1.203038 ACAGCAATGGAATGTGTGGGA 60.203 47.619 0.00 0.00 0.00 4.37
1517 2103 6.215121 TGAACATTAACAAGAACAGCAATGG 58.785 36.000 0.00 0.00 0.00 3.16
1519 2105 9.793252 GATATGAACATTAACAAGAACAGCAAT 57.207 29.630 0.00 0.00 0.00 3.56
1521 2107 8.334263 TGATATGAACATTAACAAGAACAGCA 57.666 30.769 0.00 0.00 0.00 4.41
1522 2108 9.793252 AATGATATGAACATTAACAAGAACAGC 57.207 29.630 0.00 0.00 36.40 4.40
1538 2126 7.984422 ACAACTGACTGAACAATGATATGAA 57.016 32.000 0.00 0.00 0.00 2.57
1612 2268 1.944430 GCCGCAACTAAGCACCTACTT 60.944 52.381 0.00 0.00 0.00 2.24
1629 2285 3.811497 TCTCAAAGAATGATGCATAGCCG 59.189 43.478 0.00 0.00 37.44 5.52
1663 2319 8.692710 AGTCATCAACCGATCTACTTATAACAA 58.307 33.333 0.00 0.00 0.00 2.83
1670 2326 4.462834 TCACAGTCATCAACCGATCTACTT 59.537 41.667 0.00 0.00 0.00 2.24
1672 2328 4.106197 GTCACAGTCATCAACCGATCTAC 58.894 47.826 0.00 0.00 0.00 2.59
1678 2341 0.667487 AGCGTCACAGTCATCAACCG 60.667 55.000 0.00 0.00 0.00 4.44
1785 2448 5.762218 GGAGTGATGAGTATGCTAAGCAAAT 59.238 40.000 0.00 0.00 43.62 2.32
1869 2536 2.417787 GGAATGCTTTCAATGGCCTGAC 60.418 50.000 13.72 0.00 33.23 3.51
1871 2538 1.134610 GGGAATGCTTTCAATGGCCTG 60.135 52.381 13.72 0.00 33.23 4.85
1897 2564 6.155475 TGCTTGCAAGTTACAATTTAGGTT 57.845 33.333 26.55 0.00 0.00 3.50
2009 2681 2.731217 CTGTGTTCTTTGCCCTTTTCG 58.269 47.619 0.00 0.00 0.00 3.46
2029 2701 1.657822 GGCTAGTCTTAGTTGGCAGC 58.342 55.000 0.00 0.00 0.00 5.25
2168 2875 8.447833 TGTGCGGTAAATTCTTCAGTTATTTAG 58.552 33.333 0.00 0.00 0.00 1.85
2216 2923 5.642919 GGAGCATGGAAATAACAAATGCAAA 59.357 36.000 8.47 0.00 44.76 3.68
2257 2964 9.642327 TGTACTATTTACGCAAATAACTGAAGA 57.358 29.630 2.59 0.00 36.43 2.87
2260 2967 9.642327 TCTTGTACTATTTACGCAAATAACTGA 57.358 29.630 2.59 0.93 36.43 3.41
2266 2973 7.749126 GCACTTTCTTGTACTATTTACGCAAAT 59.251 33.333 0.00 0.00 38.02 2.32
2267 2974 7.073265 GCACTTTCTTGTACTATTTACGCAAA 58.927 34.615 0.00 0.00 0.00 3.68
2268 2975 6.347888 GGCACTTTCTTGTACTATTTACGCAA 60.348 38.462 0.00 0.00 0.00 4.85
2269 2976 5.121142 GGCACTTTCTTGTACTATTTACGCA 59.879 40.000 0.00 0.00 0.00 5.24
2270 2977 5.121142 TGGCACTTTCTTGTACTATTTACGC 59.879 40.000 0.00 0.00 0.00 4.42
2271 2978 6.588756 TCTGGCACTTTCTTGTACTATTTACG 59.411 38.462 0.00 0.00 0.00 3.18
2272 2979 7.900782 TCTGGCACTTTCTTGTACTATTTAC 57.099 36.000 0.00 0.00 0.00 2.01
2273 2980 8.318412 TGATCTGGCACTTTCTTGTACTATTTA 58.682 33.333 0.00 0.00 0.00 1.40
2353 3061 7.872113 ACCTAGAGCAAATAAATTCTTCCAG 57.128 36.000 0.00 0.00 0.00 3.86
2401 3109 4.839668 TTTGTACAGTGTGGCATAAACC 57.160 40.909 5.88 0.00 0.00 3.27
2409 3117 6.426633 TGATCATACAGTTTTGTACAGTGTGG 59.573 38.462 5.88 4.22 42.29 4.17
2547 3585 1.548081 TGGCCACATGACAATCTTGG 58.452 50.000 0.00 0.00 0.00 3.61
2604 3645 0.796312 GCAGAAGATCGCGGAACAAA 59.204 50.000 6.13 0.00 0.00 2.83
2838 3897 5.471456 ACAGATGTTGCTAACTGGAAAGAAG 59.529 40.000 0.00 0.00 35.08 2.85
2845 3905 4.067896 AGTTCACAGATGTTGCTAACTGG 58.932 43.478 0.00 0.00 35.14 4.00
2857 3917 2.289945 GGCTGTCAGGAAGTTCACAGAT 60.290 50.000 20.39 0.00 38.90 2.90
2934 3999 8.860088 AGAGTTTACCATAAAGCACAATCTTTT 58.140 29.630 0.00 0.00 37.46 2.27
2968 4034 8.088981 TCTAAAATAACTCTTGTCACAGGTCTC 58.911 37.037 0.00 0.00 0.00 3.36
3019 4088 4.541973 AAAAATTGAGAATGGGCAGACC 57.458 40.909 0.00 0.00 40.81 3.85
3041 4110 4.595781 ACACCAGTAGAATAGACCAAACCA 59.404 41.667 0.00 0.00 0.00 3.67
3042 4111 5.161943 ACACCAGTAGAATAGACCAAACC 57.838 43.478 0.00 0.00 0.00 3.27
3044 4113 6.182507 ACAACACCAGTAGAATAGACCAAA 57.817 37.500 0.00 0.00 0.00 3.28
3061 4130 7.359014 GGAAACTAACTGTTCTATCGACAACAC 60.359 40.741 0.00 0.00 38.03 3.32
3066 4135 5.717119 TGGGAAACTAACTGTTCTATCGAC 58.283 41.667 0.00 0.00 38.03 4.20
3081 4150 6.599356 AAAACTAACTGTTGTTGGGAAACT 57.401 33.333 2.69 0.00 38.71 2.66
3111 4182 8.738645 ACAGAAGTGAAATCTTAGTTTTGACT 57.261 30.769 2.81 2.81 0.00 3.41
3112 4183 9.788960 AAACAGAAGTGAAATCTTAGTTTTGAC 57.211 29.630 0.00 0.00 34.86 3.18
3123 4196 8.099364 TCATACCTGAAAACAGAAGTGAAATC 57.901 34.615 0.00 0.00 0.00 2.17
3130 4203 4.583871 AGCCTCATACCTGAAAACAGAAG 58.416 43.478 0.00 0.00 0.00 2.85
3135 4208 3.421844 ACCAAGCCTCATACCTGAAAAC 58.578 45.455 0.00 0.00 0.00 2.43
3444 4523 2.831742 TCGGTCGGGGAATCCTCG 60.832 66.667 16.77 16.77 0.00 4.63
3684 8481 6.483640 ACTGTCTACTGAAGAAATGGTGTTTC 59.516 38.462 0.00 0.00 35.47 2.78
3723 8606 6.047511 ACATCATATCAGATTCAGTAGGCC 57.952 41.667 0.00 0.00 0.00 5.19
4149 9086 5.826643 AGGTTATATTGGCTGGAAACTCAA 58.173 37.500 0.00 0.00 0.00 3.02
4150 9087 5.450818 AGGTTATATTGGCTGGAAACTCA 57.549 39.130 0.00 0.00 0.00 3.41
4171 9108 5.946377 ACTGGGGTAATTCTTTTCAGCTAAG 59.054 40.000 0.00 0.00 0.00 2.18
4172 9109 5.887754 ACTGGGGTAATTCTTTTCAGCTAA 58.112 37.500 0.00 0.00 0.00 3.09
4174 9111 4.388577 ACTGGGGTAATTCTTTTCAGCT 57.611 40.909 0.00 0.00 0.00 4.24
4177 9114 5.636123 TGCTAACTGGGGTAATTCTTTTCA 58.364 37.500 0.00 0.00 0.00 2.69
4189 9126 5.353938 CAAAATGATGAATGCTAACTGGGG 58.646 41.667 0.00 0.00 0.00 4.96
4190 9127 4.807304 GCAAAATGATGAATGCTAACTGGG 59.193 41.667 0.00 0.00 35.93 4.45
4191 9128 5.290158 GTGCAAAATGATGAATGCTAACTGG 59.710 40.000 0.00 0.00 39.49 4.00
4192 9129 6.097356 AGTGCAAAATGATGAATGCTAACTG 58.903 36.000 0.00 0.00 39.49 3.16
4202 9139 1.532523 TGGCGAGTGCAAAATGATGA 58.467 45.000 0.00 0.00 45.35 2.92
4208 9145 0.100325 CACTGTTGGCGAGTGCAAAA 59.900 50.000 0.00 0.00 45.35 2.44
4231 9168 2.435372 TCATGGGAGGTGTATTTGGC 57.565 50.000 0.00 0.00 0.00 4.52
4237 9174 4.163458 GGTTTGACTATCATGGGAGGTGTA 59.837 45.833 0.00 0.00 0.00 2.90
4246 9183 5.039920 TGATCAGGGGTTTGACTATCATG 57.960 43.478 0.00 0.00 0.00 3.07
4249 9186 5.296151 TGATGATCAGGGGTTTGACTATC 57.704 43.478 0.09 0.00 0.00 2.08
4262 9199 4.035441 TGTGTGTGTGTGTTTGATGATCAG 59.965 41.667 0.09 0.00 0.00 2.90
4268 9205 4.579753 TGATGATGTGTGTGTGTGTTTGAT 59.420 37.500 0.00 0.00 0.00 2.57
4270 9207 4.290104 TGATGATGTGTGTGTGTGTTTG 57.710 40.909 0.00 0.00 0.00 2.93
4271 9208 4.157472 TGTTGATGATGTGTGTGTGTGTTT 59.843 37.500 0.00 0.00 0.00 2.83
4272 9209 3.693578 TGTTGATGATGTGTGTGTGTGTT 59.306 39.130 0.00 0.00 0.00 3.32
4273 9210 3.277715 TGTTGATGATGTGTGTGTGTGT 58.722 40.909 0.00 0.00 0.00 3.72
4276 9213 4.290104 TGTTGTTGATGATGTGTGTGTG 57.710 40.909 0.00 0.00 0.00 3.82
4312 9249 5.527582 GGGCGATTTCTTCTTATGTACATGT 59.472 40.000 18.81 2.69 0.00 3.21
4313 9250 5.333339 CGGGCGATTTCTTCTTATGTACATG 60.333 44.000 18.81 2.62 0.00 3.21
4314 9251 4.750098 CGGGCGATTTCTTCTTATGTACAT 59.250 41.667 13.93 13.93 0.00 2.29
4321 9258 0.250793 TGCCGGGCGATTTCTTCTTA 59.749 50.000 15.40 0.00 0.00 2.10
4386 9329 1.163554 GTCGGTGACTCCTCGTTAGT 58.836 55.000 0.00 0.00 0.00 2.24
4404 9347 1.613630 AGCGTCCCTTCCAGGATGT 60.614 57.895 0.00 0.00 43.74 3.06
4422 9365 0.676466 CAGCGGGCTTATGGACAACA 60.676 55.000 0.00 0.00 0.00 3.33
4424 9367 1.748879 GCAGCGGGCTTATGGACAA 60.749 57.895 0.00 0.00 40.25 3.18
4450 9393 0.537188 AGCATTTCGACTCGTCCCAT 59.463 50.000 0.00 0.00 0.00 4.00
4495 9438 4.621991 CCACCCTAACTCAATCTACATCG 58.378 47.826 0.00 0.00 0.00 3.84
4555 9498 1.485895 GCTCTGCCTGAAGGAGAAGAT 59.514 52.381 0.00 0.00 37.39 2.40
4594 9537 1.002624 GGCCAACATCGTCAGGGAA 60.003 57.895 0.00 0.00 0.00 3.97
4601 9544 1.750193 CCTTACATGGCCAACATCGT 58.250 50.000 10.96 4.86 37.84 3.73
4631 9574 2.125753 GTGCTGCCAGGACGAGAG 60.126 66.667 0.00 0.00 0.00 3.20
4633 9576 1.739562 GAAGTGCTGCCAGGACGAG 60.740 63.158 10.86 0.00 41.78 4.18
4684 9627 2.501223 GAATGTCGTGGTGCCCTCGA 62.501 60.000 12.41 12.41 45.24 4.04
4685 9628 2.047274 AATGTCGTGGTGCCCTCG 60.047 61.111 8.75 8.75 41.16 4.63
4717 9660 1.067142 CAATCAGGAGACGTTTCCGGA 60.067 52.381 25.84 25.84 43.89 5.14
4719 9662 1.337823 ACCAATCAGGAGACGTTTCCG 60.338 52.381 18.59 13.61 42.29 4.30
4725 9668 1.802880 CGGCTTACCAATCAGGAGACG 60.803 57.143 0.00 0.00 41.22 4.18
4732 9675 2.361789 GTAAAGGCGGCTTACCAATCA 58.638 47.619 25.79 1.69 34.57 2.57
4744 9687 3.536956 TCCTCAATGTAGGTAAAGGCG 57.463 47.619 0.00 0.00 37.91 5.52
4759 9702 6.070251 TGCTGAACTATTTAACCTGATCCTCA 60.070 38.462 0.00 0.00 0.00 3.86
4760 9703 6.349300 TGCTGAACTATTTAACCTGATCCTC 58.651 40.000 0.00 0.00 0.00 3.71
4773 9716 8.764524 CAGTAGAACTTTACTGCTGAACTATT 57.235 34.615 0.00 0.00 45.89 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.