Multiple sequence alignment - TraesCS3A01G341600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G341600 chr3A 100.000 3722 0 0 1 3722 588837538 588833817 0.000000e+00 6874.0
1 TraesCS3A01G341600 chr3D 96.988 2590 73 2 1133 3722 447132528 447129944 0.000000e+00 4346.0
2 TraesCS3A01G341600 chr3D 94.064 219 13 0 913 1131 447133119 447132901 2.140000e-87 333.0
3 TraesCS3A01G341600 chr3B 96.176 2484 80 3 913 3396 586519172 586516704 0.000000e+00 4047.0
4 TraesCS3A01G341600 chr3B 98.214 336 6 0 3387 3722 586516533 586516198 4.140000e-164 588.0
5 TraesCS3A01G341600 chr6B 91.774 778 55 2 1636 2405 707361770 707362546 0.000000e+00 1074.0
6 TraesCS3A01G341600 chr6B 88.787 437 37 9 1083 1513 707361341 707361771 3.290000e-145 525.0
7 TraesCS3A01G341600 chr5D 100.000 29 0 0 355 383 339360111 339360083 2.000000e-03 54.7
8 TraesCS3A01G341600 chr2D 100.000 29 0 0 338 366 572331027 572330999 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G341600 chr3A 588833817 588837538 3721 True 6874.0 6874 100.0000 1 3722 1 chr3A.!!$R1 3721
1 TraesCS3A01G341600 chr3D 447129944 447133119 3175 True 2339.5 4346 95.5260 913 3722 2 chr3D.!!$R1 2809
2 TraesCS3A01G341600 chr3B 586516198 586519172 2974 True 2317.5 4047 97.1950 913 3722 2 chr3B.!!$R1 2809
3 TraesCS3A01G341600 chr6B 707361341 707362546 1205 False 799.5 1074 90.2805 1083 2405 2 chr6B.!!$F1 1322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 783 0.032615 GTGGTCAAATGGGGCCCATA 60.033 55.0 37.44 20.53 44.4 2.74 F
862 863 0.176680 TCTCGGCAGCCAAGAAGATC 59.823 55.0 13.30 0.00 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2684 3073 0.663269 GCCACTAACAAAAGCGTGCC 60.663 55.0 0.0 0.0 0.00 5.01 R
2941 3330 0.766131 TTGGCGAAACCCTCTTACCA 59.234 50.0 0.0 0.0 37.83 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 8.825667 AACCTTCATGCGTTTTTAATTATGTT 57.174 26.923 0.00 0.00 0.00 2.71
52 53 8.825667 ACCTTCATGCGTTTTTAATTATGTTT 57.174 26.923 0.00 0.00 0.00 2.83
53 54 9.267084 ACCTTCATGCGTTTTTAATTATGTTTT 57.733 25.926 0.00 0.00 0.00 2.43
71 72 6.539649 TGTTTTATGTGTTTCTTCTCTCGG 57.460 37.500 0.00 0.00 0.00 4.63
72 73 6.053005 TGTTTTATGTGTTTCTTCTCTCGGT 58.947 36.000 0.00 0.00 0.00 4.69
73 74 6.540914 TGTTTTATGTGTTTCTTCTCTCGGTT 59.459 34.615 0.00 0.00 0.00 4.44
74 75 7.066525 TGTTTTATGTGTTTCTTCTCTCGGTTT 59.933 33.333 0.00 0.00 0.00 3.27
75 76 7.562454 TTTATGTGTTTCTTCTCTCGGTTTT 57.438 32.000 0.00 0.00 0.00 2.43
76 77 5.674933 ATGTGTTTCTTCTCTCGGTTTTC 57.325 39.130 0.00 0.00 0.00 2.29
77 78 4.766375 TGTGTTTCTTCTCTCGGTTTTCT 58.234 39.130 0.00 0.00 0.00 2.52
78 79 5.183228 TGTGTTTCTTCTCTCGGTTTTCTT 58.817 37.500 0.00 0.00 0.00 2.52
79 80 5.646360 TGTGTTTCTTCTCTCGGTTTTCTTT 59.354 36.000 0.00 0.00 0.00 2.52
80 81 6.183360 TGTGTTTCTTCTCTCGGTTTTCTTTC 60.183 38.462 0.00 0.00 0.00 2.62
81 82 6.037281 GTGTTTCTTCTCTCGGTTTTCTTTCT 59.963 38.462 0.00 0.00 0.00 2.52
82 83 6.598064 TGTTTCTTCTCTCGGTTTTCTTTCTT 59.402 34.615 0.00 0.00 0.00 2.52
83 84 7.767198 TGTTTCTTCTCTCGGTTTTCTTTCTTA 59.233 33.333 0.00 0.00 0.00 2.10
84 85 8.775527 GTTTCTTCTCTCGGTTTTCTTTCTTAT 58.224 33.333 0.00 0.00 0.00 1.73
85 86 8.904099 TTCTTCTCTCGGTTTTCTTTCTTATT 57.096 30.769 0.00 0.00 0.00 1.40
86 87 8.904099 TCTTCTCTCGGTTTTCTTTCTTATTT 57.096 30.769 0.00 0.00 0.00 1.40
87 88 9.338622 TCTTCTCTCGGTTTTCTTTCTTATTTT 57.661 29.630 0.00 0.00 0.00 1.82
88 89 9.952188 CTTCTCTCGGTTTTCTTTCTTATTTTT 57.048 29.630 0.00 0.00 0.00 1.94
89 90 9.946165 TTCTCTCGGTTTTCTTTCTTATTTTTC 57.054 29.630 0.00 0.00 0.00 2.29
90 91 8.565416 TCTCTCGGTTTTCTTTCTTATTTTTCC 58.435 33.333 0.00 0.00 0.00 3.13
91 92 8.459911 TCTCGGTTTTCTTTCTTATTTTTCCT 57.540 30.769 0.00 0.00 0.00 3.36
92 93 8.909923 TCTCGGTTTTCTTTCTTATTTTTCCTT 58.090 29.630 0.00 0.00 0.00 3.36
93 94 9.529325 CTCGGTTTTCTTTCTTATTTTTCCTTT 57.471 29.630 0.00 0.00 0.00 3.11
113 114 9.438228 TTCCTTTATTCAAATACATGTCGTACA 57.562 29.630 0.00 0.00 31.27 2.90
114 115 9.607988 TCCTTTATTCAAATACATGTCGTACAT 57.392 29.630 0.00 0.00 39.91 2.29
126 127 7.892778 ACATGTCGTACATTTTGTATACACA 57.107 32.000 4.68 0.00 36.53 3.72
127 128 8.487313 ACATGTCGTACATTTTGTATACACAT 57.513 30.769 4.68 0.00 36.53 3.21
128 129 8.387354 ACATGTCGTACATTTTGTATACACATG 58.613 33.333 20.80 20.80 43.46 3.21
129 130 7.892778 TGTCGTACATTTTGTATACACATGT 57.107 32.000 23.83 23.83 35.05 3.21
130 131 8.983307 TGTCGTACATTTTGTATACACATGTA 57.017 30.769 22.39 22.39 35.05 2.29
131 132 9.420551 TGTCGTACATTTTGTATACACATGTAA 57.579 29.630 25.36 15.60 35.60 2.41
178 179 8.747538 ATTTCTTAAATATGCTAGGAACGGTT 57.252 30.769 0.00 0.00 0.00 4.44
179 180 8.570068 TTTCTTAAATATGCTAGGAACGGTTT 57.430 30.769 0.00 0.00 0.00 3.27
180 181 8.570068 TTCTTAAATATGCTAGGAACGGTTTT 57.430 30.769 0.00 0.00 0.00 2.43
181 182 8.570068 TCTTAAATATGCTAGGAACGGTTTTT 57.430 30.769 0.00 0.00 0.00 1.94
274 275 9.816354 TCTTGATATGAGTTCACATTATTTCGA 57.184 29.630 0.00 0.00 0.00 3.71
317 318 9.713740 TTTTTGCAAATCACACAAACATTATTC 57.286 25.926 13.65 0.00 33.29 1.75
318 319 8.659925 TTTGCAAATCACACAAACATTATTCT 57.340 26.923 8.05 0.00 0.00 2.40
319 320 8.659925 TTGCAAATCACACAAACATTATTCTT 57.340 26.923 0.00 0.00 0.00 2.52
320 321 8.074474 TGCAAATCACACAAACATTATTCTTG 57.926 30.769 0.00 0.00 0.00 3.02
321 322 7.011189 GCAAATCACACAAACATTATTCTTGC 58.989 34.615 0.00 0.00 0.00 4.01
322 323 7.307278 GCAAATCACACAAACATTATTCTTGCA 60.307 33.333 0.00 0.00 0.00 4.08
323 324 8.549548 CAAATCACACAAACATTATTCTTGCAA 58.450 29.630 0.00 0.00 0.00 4.08
324 325 8.659925 AATCACACAAACATTATTCTTGCAAA 57.340 26.923 0.00 0.00 0.00 3.68
325 326 8.836268 ATCACACAAACATTATTCTTGCAAAT 57.164 26.923 0.00 0.00 0.00 2.32
326 327 8.296799 TCACACAAACATTATTCTTGCAAATC 57.703 30.769 0.00 0.00 0.00 2.17
327 328 7.924947 TCACACAAACATTATTCTTGCAAATCA 59.075 29.630 0.00 0.00 0.00 2.57
328 329 8.714179 CACACAAACATTATTCTTGCAAATCAT 58.286 29.630 0.00 0.00 0.00 2.45
329 330 8.714179 ACACAAACATTATTCTTGCAAATCATG 58.286 29.630 0.00 2.32 0.00 3.07
398 399 8.581057 TTTTTAAATGCGCAAGAACTTTATGA 57.419 26.923 17.11 3.78 43.02 2.15
399 400 8.755696 TTTTAAATGCGCAAGAACTTTATGAT 57.244 26.923 17.11 0.00 43.02 2.45
400 401 7.739022 TTAAATGCGCAAGAACTTTATGATG 57.261 32.000 17.11 0.00 43.02 3.07
401 402 3.763097 TGCGCAAGAACTTTATGATGG 57.237 42.857 8.16 0.00 43.02 3.51
402 403 3.081061 TGCGCAAGAACTTTATGATGGT 58.919 40.909 8.16 0.00 43.02 3.55
403 404 4.257731 TGCGCAAGAACTTTATGATGGTA 58.742 39.130 8.16 0.00 43.02 3.25
404 405 4.881273 TGCGCAAGAACTTTATGATGGTAT 59.119 37.500 8.16 0.00 43.02 2.73
405 406 5.207768 GCGCAAGAACTTTATGATGGTATG 58.792 41.667 0.30 0.00 43.02 2.39
406 407 5.007626 GCGCAAGAACTTTATGATGGTATGA 59.992 40.000 0.30 0.00 43.02 2.15
407 408 6.458206 GCGCAAGAACTTTATGATGGTATGAA 60.458 38.462 0.30 0.00 43.02 2.57
408 409 7.642669 CGCAAGAACTTTATGATGGTATGAAT 58.357 34.615 0.00 0.00 43.02 2.57
409 410 8.773645 CGCAAGAACTTTATGATGGTATGAATA 58.226 33.333 0.00 0.00 43.02 1.75
493 494 9.798885 TTTTGAAACACGTGAACATTTTAAAAG 57.201 25.926 25.01 1.92 30.62 2.27
494 495 8.522178 TTGAAACACGTGAACATTTTAAAAGT 57.478 26.923 25.01 2.51 0.00 2.66
495 496 8.164058 TGAAACACGTGAACATTTTAAAAGTC 57.836 30.769 25.01 4.76 0.00 3.01
496 497 7.808381 TGAAACACGTGAACATTTTAAAAGTCA 59.192 29.630 25.01 7.13 0.00 3.41
497 498 7.500807 AACACGTGAACATTTTAAAAGTCAC 57.499 32.000 25.01 21.21 0.00 3.67
498 499 6.613233 ACACGTGAACATTTTAAAAGTCACA 58.387 32.000 25.01 14.71 0.00 3.58
499 500 7.085116 ACACGTGAACATTTTAAAAGTCACAA 58.915 30.769 25.01 5.82 0.00 3.33
500 501 7.595502 ACACGTGAACATTTTAAAAGTCACAAA 59.404 29.630 25.01 0.40 0.00 2.83
501 502 7.890717 CACGTGAACATTTTAAAAGTCACAAAC 59.109 33.333 25.90 12.27 0.00 2.93
502 503 7.595502 ACGTGAACATTTTAAAAGTCACAAACA 59.404 29.630 25.90 10.89 0.00 2.83
503 504 8.591312 CGTGAACATTTTAAAAGTCACAAACAT 58.409 29.630 25.90 1.89 0.00 2.71
515 516 6.348621 AGTCACAAACATTGTTTTGAATGC 57.651 33.333 12.02 8.09 43.23 3.56
516 517 6.108015 AGTCACAAACATTGTTTTGAATGCT 58.892 32.000 12.02 9.72 43.23 3.79
517 518 7.264221 AGTCACAAACATTGTTTTGAATGCTA 58.736 30.769 12.02 0.00 43.23 3.49
518 519 7.222611 AGTCACAAACATTGTTTTGAATGCTAC 59.777 33.333 12.02 4.32 43.23 3.58
519 520 6.478344 TCACAAACATTGTTTTGAATGCTACC 59.522 34.615 12.02 0.00 43.23 3.18
520 521 6.257411 CACAAACATTGTTTTGAATGCTACCA 59.743 34.615 12.02 0.00 43.23 3.25
521 522 6.820656 ACAAACATTGTTTTGAATGCTACCAA 59.179 30.769 12.02 0.00 42.22 3.67
522 523 7.335422 ACAAACATTGTTTTGAATGCTACCAAA 59.665 29.630 12.02 0.00 42.22 3.28
523 524 8.344098 CAAACATTGTTTTGAATGCTACCAAAT 58.656 29.630 12.02 0.00 38.54 2.32
524 525 8.449251 AACATTGTTTTGAATGCTACCAAATT 57.551 26.923 0.00 0.00 36.89 1.82
525 526 8.449251 ACATTGTTTTGAATGCTACCAAATTT 57.551 26.923 0.00 0.00 36.89 1.82
526 527 8.901793 ACATTGTTTTGAATGCTACCAAATTTT 58.098 25.926 0.00 0.00 36.89 1.82
527 528 9.733219 CATTGTTTTGAATGCTACCAAATTTTT 57.267 25.926 0.00 0.00 33.00 1.94
571 572 9.709495 ATAATTTTTACACTGCATGAACATTGT 57.291 25.926 0.00 0.00 37.26 2.71
572 573 8.436046 AATTTTTACACTGCATGAACATTGTT 57.564 26.923 0.63 0.63 35.38 2.83
573 574 7.840342 TTTTTACACTGCATGAACATTGTTT 57.160 28.000 3.08 0.00 35.38 2.83
574 575 8.932945 TTTTTACACTGCATGAACATTGTTTA 57.067 26.923 3.08 0.00 35.38 2.01
575 576 8.932945 TTTTACACTGCATGAACATTGTTTAA 57.067 26.923 3.08 0.00 35.38 1.52
576 577 8.932945 TTTACACTGCATGAACATTGTTTAAA 57.067 26.923 3.08 0.00 35.38 1.52
577 578 9.539825 TTTACACTGCATGAACATTGTTTAAAT 57.460 25.926 3.08 0.00 35.38 1.40
578 579 7.410800 ACACTGCATGAACATTGTTTAAATG 57.589 32.000 3.08 9.30 30.06 2.32
579 580 6.073657 ACACTGCATGAACATTGTTTAAATGC 60.074 34.615 24.34 24.34 39.44 3.56
580 581 5.118971 ACTGCATGAACATTGTTTAAATGCG 59.881 36.000 24.82 22.27 41.34 4.73
581 582 4.987285 TGCATGAACATTGTTTAAATGCGT 59.013 33.333 24.82 6.83 41.34 5.24
582 583 5.107568 TGCATGAACATTGTTTAAATGCGTG 60.108 36.000 24.82 15.58 41.34 5.34
583 584 5.118357 GCATGAACATTGTTTAAATGCGTGA 59.882 36.000 20.38 0.00 30.78 4.35
584 585 6.346439 GCATGAACATTGTTTAAATGCGTGAA 60.346 34.615 20.38 0.00 30.78 3.18
585 586 6.746104 TGAACATTGTTTAAATGCGTGAAG 57.254 33.333 3.08 0.00 0.00 3.02
586 587 5.689514 TGAACATTGTTTAAATGCGTGAAGG 59.310 36.000 3.08 0.00 0.00 3.46
587 588 5.446143 ACATTGTTTAAATGCGTGAAGGA 57.554 34.783 0.00 0.00 0.00 3.36
588 589 6.024552 ACATTGTTTAAATGCGTGAAGGAT 57.975 33.333 0.00 0.00 0.00 3.24
589 590 5.863397 ACATTGTTTAAATGCGTGAAGGATG 59.137 36.000 0.00 0.00 0.00 3.51
590 591 3.832276 TGTTTAAATGCGTGAAGGATGC 58.168 40.909 0.00 0.00 37.07 3.91
591 592 3.505680 TGTTTAAATGCGTGAAGGATGCT 59.494 39.130 0.00 0.00 37.49 3.79
592 593 4.022416 TGTTTAAATGCGTGAAGGATGCTT 60.022 37.500 0.00 0.00 37.49 3.91
593 594 4.782019 TTAAATGCGTGAAGGATGCTTT 57.218 36.364 0.00 0.00 37.49 3.51
594 595 2.927553 AATGCGTGAAGGATGCTTTC 57.072 45.000 0.00 0.00 37.49 2.62
595 596 1.825090 ATGCGTGAAGGATGCTTTCA 58.175 45.000 0.00 0.00 37.49 2.69
596 597 1.603456 TGCGTGAAGGATGCTTTCAA 58.397 45.000 0.00 0.00 36.41 2.69
597 598 1.952990 TGCGTGAAGGATGCTTTCAAA 59.047 42.857 0.00 0.00 36.41 2.69
598 599 2.360483 TGCGTGAAGGATGCTTTCAAAA 59.640 40.909 0.00 0.00 36.41 2.44
599 600 3.005684 TGCGTGAAGGATGCTTTCAAAAT 59.994 39.130 0.00 0.00 36.41 1.82
600 601 3.989817 GCGTGAAGGATGCTTTCAAAATT 59.010 39.130 0.00 0.00 36.41 1.82
601 602 4.448732 GCGTGAAGGATGCTTTCAAAATTT 59.551 37.500 0.00 0.00 36.41 1.82
602 603 5.633182 GCGTGAAGGATGCTTTCAAAATTTA 59.367 36.000 0.00 0.00 36.41 1.40
603 604 6.311200 GCGTGAAGGATGCTTTCAAAATTTAT 59.689 34.615 0.00 0.00 36.41 1.40
604 605 7.669098 CGTGAAGGATGCTTTCAAAATTTATG 58.331 34.615 0.00 0.00 36.41 1.90
605 606 7.541783 CGTGAAGGATGCTTTCAAAATTTATGA 59.458 33.333 0.00 0.00 36.41 2.15
606 607 9.206870 GTGAAGGATGCTTTCAAAATTTATGAA 57.793 29.630 0.00 10.04 36.41 2.57
607 608 9.775854 TGAAGGATGCTTTCAAAATTTATGAAA 57.224 25.926 18.77 18.77 42.73 2.69
652 653 9.092876 TGTTGAAATTTGTTCTCAATACAAACC 57.907 29.630 0.00 0.00 45.23 3.27
653 654 9.092876 GTTGAAATTTGTTCTCAATACAAACCA 57.907 29.630 0.00 1.24 45.23 3.67
654 655 9.658799 TTGAAATTTGTTCTCAATACAAACCAA 57.341 25.926 0.00 6.16 45.23 3.67
655 656 9.658799 TGAAATTTGTTCTCAATACAAACCAAA 57.341 25.926 0.00 0.00 45.23 3.28
658 659 9.665719 AATTTGTTCTCAATACAAACCAAAAGT 57.334 25.926 3.56 0.00 45.23 2.66
659 660 9.665719 ATTTGTTCTCAATACAAACCAAAAGTT 57.334 25.926 3.56 0.00 45.23 2.66
672 673 9.214957 ACAAACCAAAAGTTAAAAAGGAAAGAG 57.785 29.630 0.00 0.00 37.88 2.85
673 674 9.430623 CAAACCAAAAGTTAAAAAGGAAAGAGA 57.569 29.630 0.00 0.00 37.88 3.10
683 684 9.099820 GTTAAAAAGGAAAGAGATAAACGAACG 57.900 33.333 0.00 0.00 0.00 3.95
684 685 7.486802 AAAAAGGAAAGAGATAAACGAACGA 57.513 32.000 0.14 0.00 0.00 3.85
685 686 7.486802 AAAAGGAAAGAGATAAACGAACGAA 57.513 32.000 0.14 0.00 0.00 3.85
686 687 6.463483 AAGGAAAGAGATAAACGAACGAAC 57.537 37.500 0.14 0.00 0.00 3.95
687 688 4.620184 AGGAAAGAGATAAACGAACGAACG 59.380 41.667 0.14 0.00 39.31 3.95
688 689 4.618489 GGAAAGAGATAAACGAACGAACGA 59.382 41.667 11.97 0.00 37.03 3.85
689 690 5.117592 GGAAAGAGATAAACGAACGAACGAA 59.882 40.000 11.97 0.00 37.03 3.85
690 691 5.742442 AAGAGATAAACGAACGAACGAAG 57.258 39.130 11.97 0.00 37.03 3.79
691 692 4.164294 AGAGATAAACGAACGAACGAAGG 58.836 43.478 11.97 0.00 37.03 3.46
692 693 4.083110 AGAGATAAACGAACGAACGAAGGA 60.083 41.667 11.97 0.00 37.03 3.36
693 694 4.164294 AGATAAACGAACGAACGAAGGAG 58.836 43.478 11.97 0.00 37.03 3.69
694 695 1.494824 AAACGAACGAACGAAGGAGG 58.505 50.000 11.97 0.00 37.03 4.30
695 696 0.319297 AACGAACGAACGAAGGAGGG 60.319 55.000 11.97 0.00 37.03 4.30
696 697 1.174712 ACGAACGAACGAAGGAGGGA 61.175 55.000 11.97 0.00 37.03 4.20
697 698 0.038892 CGAACGAACGAAGGAGGGAA 60.039 55.000 0.14 0.00 35.09 3.97
698 699 1.426423 GAACGAACGAAGGAGGGAAC 58.574 55.000 0.14 0.00 0.00 3.62
699 700 4.530585 CGAACGAACGAAGGAGGGAACT 62.531 54.545 0.14 0.00 38.52 3.01
700 701 1.915141 ACGAACGAAGGAGGGAACTA 58.085 50.000 0.14 0.00 44.43 2.24
701 702 2.242043 ACGAACGAAGGAGGGAACTAA 58.758 47.619 0.14 0.00 44.43 2.24
702 703 2.029560 ACGAACGAAGGAGGGAACTAAC 60.030 50.000 0.14 0.00 44.43 2.34
703 704 2.603953 GAACGAAGGAGGGAACTAACG 58.396 52.381 0.00 0.00 44.43 3.18
704 705 1.625511 ACGAAGGAGGGAACTAACGT 58.374 50.000 0.00 0.00 44.43 3.99
705 706 1.966354 ACGAAGGAGGGAACTAACGTT 59.034 47.619 5.88 5.88 44.43 3.99
706 707 2.029560 ACGAAGGAGGGAACTAACGTTC 60.030 50.000 2.82 0.00 46.93 3.95
720 721 5.505286 ACTAACGTTCGTATCATCTAACGG 58.495 41.667 2.82 0.00 46.62 4.44
721 722 3.344904 ACGTTCGTATCATCTAACGGG 57.655 47.619 10.67 0.00 46.62 5.28
722 723 2.049228 CGTTCGTATCATCTAACGGGC 58.951 52.381 0.00 0.00 40.63 6.13
723 724 2.049228 GTTCGTATCATCTAACGGGCG 58.951 52.381 0.00 0.00 39.52 6.13
724 725 1.596603 TCGTATCATCTAACGGGCGA 58.403 50.000 0.00 0.00 39.52 5.54
725 726 1.534163 TCGTATCATCTAACGGGCGAG 59.466 52.381 0.00 0.00 39.52 5.03
726 727 1.699343 GTATCATCTAACGGGCGAGC 58.301 55.000 0.00 0.00 0.00 5.03
727 728 0.601558 TATCATCTAACGGGCGAGCC 59.398 55.000 5.37 5.37 0.00 4.70
739 740 3.414700 CGAGCCCACAACAGCGTC 61.415 66.667 0.00 0.00 0.00 5.19
740 741 2.031163 GAGCCCACAACAGCGTCT 59.969 61.111 0.00 0.00 0.00 4.18
741 742 2.029844 GAGCCCACAACAGCGTCTC 61.030 63.158 0.00 0.00 0.00 3.36
742 743 2.031163 GCCCACAACAGCGTCTCT 59.969 61.111 0.00 0.00 0.00 3.10
743 744 1.185618 AGCCCACAACAGCGTCTCTA 61.186 55.000 0.00 0.00 0.00 2.43
744 745 0.737715 GCCCACAACAGCGTCTCTAG 60.738 60.000 0.00 0.00 0.00 2.43
745 746 0.108615 CCCACAACAGCGTCTCTAGG 60.109 60.000 0.00 0.00 0.00 3.02
746 747 0.108615 CCACAACAGCGTCTCTAGGG 60.109 60.000 0.00 0.00 0.00 3.53
747 748 0.603569 CACAACAGCGTCTCTAGGGT 59.396 55.000 0.00 0.00 0.00 4.34
748 749 1.000955 CACAACAGCGTCTCTAGGGTT 59.999 52.381 0.00 0.00 0.00 4.11
749 750 1.000955 ACAACAGCGTCTCTAGGGTTG 59.999 52.381 0.00 0.00 40.89 3.77
750 751 0.608640 AACAGCGTCTCTAGGGTTGG 59.391 55.000 0.00 0.00 0.00 3.77
751 752 1.153549 CAGCGTCTCTAGGGTTGGC 60.154 63.158 0.00 0.00 0.00 4.52
752 753 1.305381 AGCGTCTCTAGGGTTGGCT 60.305 57.895 0.00 0.00 0.00 4.75
753 754 1.153549 GCGTCTCTAGGGTTGGCTG 60.154 63.158 0.00 0.00 0.00 4.85
754 755 1.153549 CGTCTCTAGGGTTGGCTGC 60.154 63.158 0.00 0.00 0.00 5.25
755 756 1.608717 CGTCTCTAGGGTTGGCTGCT 61.609 60.000 0.00 0.00 0.00 4.24
756 757 1.486211 GTCTCTAGGGTTGGCTGCTA 58.514 55.000 0.00 0.00 0.00 3.49
757 758 2.043227 GTCTCTAGGGTTGGCTGCTAT 58.957 52.381 0.00 0.00 0.00 2.97
758 759 2.036604 GTCTCTAGGGTTGGCTGCTATC 59.963 54.545 0.00 0.00 0.00 2.08
759 760 1.000283 CTCTAGGGTTGGCTGCTATCG 60.000 57.143 0.00 0.00 0.00 2.92
760 761 1.040646 CTAGGGTTGGCTGCTATCGA 58.959 55.000 0.00 0.00 0.00 3.59
761 762 0.750850 TAGGGTTGGCTGCTATCGAC 59.249 55.000 0.00 0.00 0.00 4.20
762 763 0.978146 AGGGTTGGCTGCTATCGACT 60.978 55.000 0.00 0.00 0.00 4.18
763 764 0.811616 GGGTTGGCTGCTATCGACTG 60.812 60.000 0.00 0.00 0.00 3.51
764 765 0.108138 GGTTGGCTGCTATCGACTGT 60.108 55.000 0.00 0.00 0.00 3.55
765 766 1.002366 GTTGGCTGCTATCGACTGTG 58.998 55.000 0.00 0.00 0.00 3.66
766 767 0.108186 TTGGCTGCTATCGACTGTGG 60.108 55.000 0.00 0.00 0.00 4.17
767 768 1.257750 TGGCTGCTATCGACTGTGGT 61.258 55.000 0.00 0.00 0.00 4.16
768 769 0.528684 GGCTGCTATCGACTGTGGTC 60.529 60.000 0.00 0.00 38.97 4.02
769 770 0.173481 GCTGCTATCGACTGTGGTCA 59.827 55.000 0.00 0.00 42.21 4.02
770 771 1.404181 GCTGCTATCGACTGTGGTCAA 60.404 52.381 0.00 0.00 42.21 3.18
771 772 2.930887 GCTGCTATCGACTGTGGTCAAA 60.931 50.000 0.00 0.00 42.21 2.69
772 773 3.525537 CTGCTATCGACTGTGGTCAAAT 58.474 45.455 0.00 0.00 42.21 2.32
773 774 3.261580 TGCTATCGACTGTGGTCAAATG 58.738 45.455 0.00 0.00 42.21 2.32
774 775 2.609459 GCTATCGACTGTGGTCAAATGG 59.391 50.000 0.00 0.00 42.21 3.16
775 776 2.113860 ATCGACTGTGGTCAAATGGG 57.886 50.000 0.00 0.00 42.21 4.00
776 777 0.036164 TCGACTGTGGTCAAATGGGG 59.964 55.000 0.00 0.00 42.21 4.96
777 778 1.586154 CGACTGTGGTCAAATGGGGC 61.586 60.000 0.00 0.00 42.21 5.80
778 779 1.228862 ACTGTGGTCAAATGGGGCC 60.229 57.895 0.00 0.00 0.00 5.80
779 780 1.984026 CTGTGGTCAAATGGGGCCC 60.984 63.158 18.17 18.17 0.00 5.80
780 781 2.119391 GTGGTCAAATGGGGCCCA 59.881 61.111 30.97 30.97 38.19 5.36
782 783 0.032615 GTGGTCAAATGGGGCCCATA 60.033 55.000 37.44 20.53 44.40 2.74
783 784 0.940452 TGGTCAAATGGGGCCCATAT 59.060 50.000 37.44 23.73 44.40 1.78
784 785 1.341080 GGTCAAATGGGGCCCATATG 58.659 55.000 37.44 19.62 44.40 1.78
785 786 1.133199 GGTCAAATGGGGCCCATATGA 60.133 52.381 37.44 21.17 44.40 2.15
786 787 2.676748 GTCAAATGGGGCCCATATGAA 58.323 47.619 37.44 20.29 44.40 2.57
787 788 2.365293 GTCAAATGGGGCCCATATGAAC 59.635 50.000 37.44 26.36 44.40 3.18
788 789 1.693606 CAAATGGGGCCCATATGAACC 59.306 52.381 37.44 3.34 44.40 3.62
789 790 0.190815 AATGGGGCCCATATGAACCC 59.809 55.000 37.44 19.65 44.40 4.11
791 792 3.688032 GGGCCCATATGAACCCCT 58.312 61.111 19.95 0.00 36.24 4.79
792 793 2.877150 GGGCCCATATGAACCCCTA 58.123 57.895 19.95 0.00 36.24 3.53
793 794 1.154430 GGGCCCATATGAACCCCTAA 58.846 55.000 19.95 0.00 36.24 2.69
794 795 1.501604 GGGCCCATATGAACCCCTAAA 59.498 52.381 19.95 0.00 36.24 1.85
795 796 2.090999 GGGCCCATATGAACCCCTAAAA 60.091 50.000 19.95 0.00 36.24 1.52
796 797 3.631346 GGGCCCATATGAACCCCTAAAAA 60.631 47.826 19.95 0.00 36.24 1.94
818 819 5.482163 AAAATTTGGGGCCCATATTATCG 57.518 39.130 32.82 0.00 34.89 2.92
819 820 3.825908 ATTTGGGGCCCATATTATCGT 57.174 42.857 29.34 1.82 31.53 3.73
820 821 2.871096 TTGGGGCCCATATTATCGTC 57.129 50.000 29.34 1.60 31.53 4.20
821 822 2.038863 TGGGGCCCATATTATCGTCT 57.961 50.000 24.76 0.00 0.00 4.18
822 823 1.628340 TGGGGCCCATATTATCGTCTG 59.372 52.381 24.76 0.00 0.00 3.51
823 824 1.906574 GGGGCCCATATTATCGTCTGA 59.093 52.381 26.86 0.00 0.00 3.27
824 825 2.304761 GGGGCCCATATTATCGTCTGAA 59.695 50.000 26.86 0.00 0.00 3.02
825 826 3.244770 GGGGCCCATATTATCGTCTGAAA 60.245 47.826 26.86 0.00 0.00 2.69
826 827 4.567747 GGGGCCCATATTATCGTCTGAAAT 60.568 45.833 26.86 0.00 0.00 2.17
827 828 4.396166 GGGCCCATATTATCGTCTGAAATG 59.604 45.833 19.95 0.00 0.00 2.32
828 829 4.396166 GGCCCATATTATCGTCTGAAATGG 59.604 45.833 0.00 0.00 33.67 3.16
829 830 4.142600 GCCCATATTATCGTCTGAAATGGC 60.143 45.833 0.00 0.00 32.75 4.40
830 831 5.248640 CCCATATTATCGTCTGAAATGGCT 58.751 41.667 0.00 0.00 32.75 4.75
831 832 5.352569 CCCATATTATCGTCTGAAATGGCTC 59.647 44.000 0.00 0.00 32.75 4.70
832 833 5.934043 CCATATTATCGTCTGAAATGGCTCA 59.066 40.000 0.00 0.00 0.00 4.26
833 834 6.427853 CCATATTATCGTCTGAAATGGCTCAA 59.572 38.462 0.00 0.00 0.00 3.02
834 835 5.998454 ATTATCGTCTGAAATGGCTCAAG 57.002 39.130 0.00 0.00 0.00 3.02
835 836 2.099141 TCGTCTGAAATGGCTCAAGG 57.901 50.000 0.00 0.00 0.00 3.61
836 837 1.089920 CGTCTGAAATGGCTCAAGGG 58.910 55.000 0.00 0.00 0.00 3.95
837 838 0.813821 GTCTGAAATGGCTCAAGGGC 59.186 55.000 0.00 0.00 41.27 5.19
845 846 3.397906 GCTCAAGGGCCACTCTCT 58.602 61.111 6.18 0.00 0.00 3.10
846 847 1.220477 GCTCAAGGGCCACTCTCTC 59.780 63.158 6.18 0.00 0.00 3.20
847 848 1.515020 CTCAAGGGCCACTCTCTCG 59.485 63.158 6.18 0.00 0.00 4.04
848 849 1.954362 CTCAAGGGCCACTCTCTCGG 61.954 65.000 6.18 0.00 0.00 4.63
854 855 3.385384 CCACTCTCTCGGCAGCCA 61.385 66.667 13.30 0.00 0.00 4.75
855 856 2.659016 CACTCTCTCGGCAGCCAA 59.341 61.111 13.30 0.00 0.00 4.52
856 857 1.447489 CACTCTCTCGGCAGCCAAG 60.447 63.158 13.30 1.41 0.00 3.61
857 858 1.607756 ACTCTCTCGGCAGCCAAGA 60.608 57.895 13.30 7.17 0.00 3.02
858 859 1.188219 ACTCTCTCGGCAGCCAAGAA 61.188 55.000 13.30 0.00 0.00 2.52
859 860 0.459934 CTCTCTCGGCAGCCAAGAAG 60.460 60.000 13.30 4.82 0.00 2.85
860 861 0.900182 TCTCTCGGCAGCCAAGAAGA 60.900 55.000 13.30 4.89 0.00 2.87
861 862 0.177604 CTCTCGGCAGCCAAGAAGAT 59.822 55.000 13.30 0.00 0.00 2.40
862 863 0.176680 TCTCGGCAGCCAAGAAGATC 59.823 55.000 13.30 0.00 0.00 2.75
863 864 0.177604 CTCGGCAGCCAAGAAGATCT 59.822 55.000 13.30 0.00 0.00 2.75
864 865 0.176680 TCGGCAGCCAAGAAGATCTC 59.823 55.000 13.30 0.00 0.00 2.75
865 866 0.813210 CGGCAGCCAAGAAGATCTCC 60.813 60.000 13.30 0.00 0.00 3.71
866 867 0.254178 GGCAGCCAAGAAGATCTCCA 59.746 55.000 6.55 0.00 0.00 3.86
867 868 1.666054 GCAGCCAAGAAGATCTCCAG 58.334 55.000 0.00 0.00 0.00 3.86
868 869 1.666054 CAGCCAAGAAGATCTCCAGC 58.334 55.000 0.00 0.00 0.00 4.85
869 870 0.545646 AGCCAAGAAGATCTCCAGCC 59.454 55.000 0.00 0.00 0.00 4.85
870 871 0.813210 GCCAAGAAGATCTCCAGCCG 60.813 60.000 0.00 0.00 0.00 5.52
871 872 0.539051 CCAAGAAGATCTCCAGCCGT 59.461 55.000 0.00 0.00 0.00 5.68
872 873 1.065854 CCAAGAAGATCTCCAGCCGTT 60.066 52.381 0.00 0.00 0.00 4.44
873 874 2.616510 CCAAGAAGATCTCCAGCCGTTT 60.617 50.000 0.00 0.00 0.00 3.60
874 875 2.675348 CAAGAAGATCTCCAGCCGTTTC 59.325 50.000 0.00 0.00 0.00 2.78
875 876 2.183679 AGAAGATCTCCAGCCGTTTCT 58.816 47.619 0.00 0.00 0.00 2.52
876 877 2.093764 AGAAGATCTCCAGCCGTTTCTG 60.094 50.000 0.00 0.00 0.00 3.02
877 878 1.561643 AGATCTCCAGCCGTTTCTGA 58.438 50.000 0.00 0.00 36.19 3.27
878 879 1.902508 AGATCTCCAGCCGTTTCTGAA 59.097 47.619 0.00 0.00 36.19 3.02
879 880 2.303022 AGATCTCCAGCCGTTTCTGAAA 59.697 45.455 0.00 0.00 36.19 2.69
880 881 2.631160 TCTCCAGCCGTTTCTGAAAA 57.369 45.000 4.09 0.00 36.19 2.29
881 882 2.925724 TCTCCAGCCGTTTCTGAAAAA 58.074 42.857 4.09 0.00 36.19 1.94
909 910 2.997485 AAAATCTCGAGCCAAACTGC 57.003 45.000 7.81 0.00 0.00 4.40
910 911 1.168714 AAATCTCGAGCCAAACTGCC 58.831 50.000 7.81 0.00 0.00 4.85
911 912 1.021390 AATCTCGAGCCAAACTGCCG 61.021 55.000 7.81 0.00 0.00 5.69
959 960 1.784062 CAGAACTCTGAAAGCGCCG 59.216 57.895 2.29 0.00 46.59 6.46
1626 2004 0.247736 GAATCCTGTCGGTCTGCACT 59.752 55.000 0.00 0.00 0.00 4.40
1686 2064 1.292541 GGTGGTGAAGTCGGGACTC 59.707 63.158 1.16 0.00 41.58 3.36
1701 2079 1.804748 GGACTCGACCACAATGTTTCC 59.195 52.381 0.00 0.00 0.00 3.13
1944 2322 3.429141 GCATGTGCGCAGACTGCT 61.429 61.111 24.36 2.95 42.25 4.24
1985 2363 3.181445 ACGGTGCATGGGTACATTATCAT 60.181 43.478 0.00 0.00 34.35 2.45
2034 2412 1.858707 CGTGCGTGCTTGTAATGCG 60.859 57.895 0.00 0.00 40.34 4.73
2409 2795 1.609626 AGGTAGTAGAGGAGGCAGGA 58.390 55.000 0.00 0.00 0.00 3.86
2684 3073 3.862124 CGAGAGCGGAACAGTTGG 58.138 61.111 0.00 0.00 0.00 3.77
2852 3241 4.829064 TTTTGTTACAAGCTAGCACTGG 57.171 40.909 18.83 5.46 0.00 4.00
2941 3330 0.179029 CACCACCGAAACTTGGACCT 60.179 55.000 0.00 0.00 36.28 3.85
3230 3619 1.483415 TCACCGGCCTGGAATTACTAC 59.517 52.381 18.74 0.00 42.00 2.73
3436 4005 7.926674 TTGAAGCTCATCTTAATTCATGTGA 57.073 32.000 0.00 0.00 34.56 3.58
3546 4117 3.004106 AGCATGCTGACTTTCACTTGTTC 59.996 43.478 21.98 0.00 0.00 3.18
3616 4187 7.439655 CCATTCTCTGTACATTCTAAAGCCTAC 59.560 40.741 0.00 0.00 0.00 3.18
3635 4206 5.132502 CCTACCAATGGATCAAGCATGTTA 58.867 41.667 6.16 0.00 0.00 2.41
3707 4278 8.154203 TGGATAGATTTGCCGATAAAGATACAA 58.846 33.333 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.915629 AACATAATTAAAAACGCATGAAGGTTA 57.084 25.926 0.00 0.00 0.00 2.85
26 27 8.825667 AACATAATTAAAAACGCATGAAGGTT 57.174 26.923 0.00 0.00 0.00 3.50
27 28 8.825667 AAACATAATTAAAAACGCATGAAGGT 57.174 26.923 0.00 0.00 0.00 3.50
45 46 8.717821 CCGAGAGAAGAAACACATAAAACATAA 58.282 33.333 0.00 0.00 0.00 1.90
46 47 7.876068 ACCGAGAGAAGAAACACATAAAACATA 59.124 33.333 0.00 0.00 0.00 2.29
47 48 6.710744 ACCGAGAGAAGAAACACATAAAACAT 59.289 34.615 0.00 0.00 0.00 2.71
48 49 6.053005 ACCGAGAGAAGAAACACATAAAACA 58.947 36.000 0.00 0.00 0.00 2.83
49 50 6.541111 ACCGAGAGAAGAAACACATAAAAC 57.459 37.500 0.00 0.00 0.00 2.43
50 51 7.562454 AAACCGAGAGAAGAAACACATAAAA 57.438 32.000 0.00 0.00 0.00 1.52
51 52 7.497909 AGAAAACCGAGAGAAGAAACACATAAA 59.502 33.333 0.00 0.00 0.00 1.40
52 53 6.990349 AGAAAACCGAGAGAAGAAACACATAA 59.010 34.615 0.00 0.00 0.00 1.90
53 54 6.522054 AGAAAACCGAGAGAAGAAACACATA 58.478 36.000 0.00 0.00 0.00 2.29
54 55 5.368989 AGAAAACCGAGAGAAGAAACACAT 58.631 37.500 0.00 0.00 0.00 3.21
55 56 4.766375 AGAAAACCGAGAGAAGAAACACA 58.234 39.130 0.00 0.00 0.00 3.72
56 57 5.736486 AAGAAAACCGAGAGAAGAAACAC 57.264 39.130 0.00 0.00 0.00 3.32
57 58 6.113411 AGAAAGAAAACCGAGAGAAGAAACA 58.887 36.000 0.00 0.00 0.00 2.83
58 59 6.606234 AGAAAGAAAACCGAGAGAAGAAAC 57.394 37.500 0.00 0.00 0.00 2.78
59 60 8.904099 ATAAGAAAGAAAACCGAGAGAAGAAA 57.096 30.769 0.00 0.00 0.00 2.52
60 61 8.904099 AATAAGAAAGAAAACCGAGAGAAGAA 57.096 30.769 0.00 0.00 0.00 2.52
61 62 8.904099 AAATAAGAAAGAAAACCGAGAGAAGA 57.096 30.769 0.00 0.00 0.00 2.87
62 63 9.952188 AAAAATAAGAAAGAAAACCGAGAGAAG 57.048 29.630 0.00 0.00 0.00 2.85
63 64 9.946165 GAAAAATAAGAAAGAAAACCGAGAGAA 57.054 29.630 0.00 0.00 0.00 2.87
64 65 8.565416 GGAAAAATAAGAAAGAAAACCGAGAGA 58.435 33.333 0.00 0.00 0.00 3.10
65 66 8.568794 AGGAAAAATAAGAAAGAAAACCGAGAG 58.431 33.333 0.00 0.00 0.00 3.20
66 67 8.459911 AGGAAAAATAAGAAAGAAAACCGAGA 57.540 30.769 0.00 0.00 0.00 4.04
67 68 9.529325 AAAGGAAAAATAAGAAAGAAAACCGAG 57.471 29.630 0.00 0.00 0.00 4.63
87 88 9.438228 TGTACGACATGTATTTGAATAAAGGAA 57.562 29.630 0.00 0.00 35.02 3.36
88 89 9.607988 ATGTACGACATGTATTTGAATAAAGGA 57.392 29.630 0.00 0.00 37.45 3.36
100 101 9.589111 TGTGTATACAAAATGTACGACATGTAT 57.411 29.630 7.25 14.55 36.42 2.29
101 102 8.983307 TGTGTATACAAAATGTACGACATGTA 57.017 30.769 7.25 4.54 35.68 2.29
102 103 7.892778 TGTGTATACAAAATGTACGACATGT 57.107 32.000 7.25 0.00 35.68 3.21
103 104 8.387354 ACATGTGTATACAAAATGTACGACATG 58.613 33.333 24.01 20.64 42.26 3.21
104 105 8.487313 ACATGTGTATACAAAATGTACGACAT 57.513 30.769 24.01 11.24 39.47 3.06
105 106 7.892778 ACATGTGTATACAAAATGTACGACA 57.107 32.000 24.01 9.75 40.84 4.35
152 153 9.841295 AACCGTTCCTAGCATATTTAAGAAATA 57.159 29.630 0.00 0.00 37.71 1.40
153 154 8.747538 AACCGTTCCTAGCATATTTAAGAAAT 57.252 30.769 0.00 0.00 34.90 2.17
154 155 8.570068 AAACCGTTCCTAGCATATTTAAGAAA 57.430 30.769 0.00 0.00 0.00 2.52
155 156 8.570068 AAAACCGTTCCTAGCATATTTAAGAA 57.430 30.769 0.00 0.00 0.00 2.52
156 157 8.570068 AAAAACCGTTCCTAGCATATTTAAGA 57.430 30.769 0.00 0.00 0.00 2.10
248 249 9.816354 TCGAAATAATGTGAACTCATATCAAGA 57.184 29.630 0.00 0.00 0.00 3.02
291 292 9.713740 GAATAATGTTTGTGTGATTTGCAAAAA 57.286 25.926 17.19 4.82 34.47 1.94
292 293 9.107177 AGAATAATGTTTGTGTGATTTGCAAAA 57.893 25.926 17.19 0.00 34.47 2.44
293 294 8.659925 AGAATAATGTTTGTGTGATTTGCAAA 57.340 26.923 15.44 15.44 0.00 3.68
294 295 8.549548 CAAGAATAATGTTTGTGTGATTTGCAA 58.450 29.630 0.00 0.00 0.00 4.08
295 296 7.307278 GCAAGAATAATGTTTGTGTGATTTGCA 60.307 33.333 0.00 0.00 35.88 4.08
296 297 7.011189 GCAAGAATAATGTTTGTGTGATTTGC 58.989 34.615 0.00 0.00 0.00 3.68
297 298 8.074474 TGCAAGAATAATGTTTGTGTGATTTG 57.926 30.769 0.00 0.00 0.00 2.32
298 299 8.659925 TTGCAAGAATAATGTTTGTGTGATTT 57.340 26.923 0.00 0.00 0.00 2.17
299 300 8.659925 TTTGCAAGAATAATGTTTGTGTGATT 57.340 26.923 0.00 0.00 0.00 2.57
300 301 8.836268 ATTTGCAAGAATAATGTTTGTGTGAT 57.164 26.923 0.00 0.00 0.00 3.06
301 302 7.924947 TGATTTGCAAGAATAATGTTTGTGTGA 59.075 29.630 0.00 0.00 0.00 3.58
302 303 8.074474 TGATTTGCAAGAATAATGTTTGTGTG 57.926 30.769 0.00 0.00 0.00 3.82
303 304 8.714179 CATGATTTGCAAGAATAATGTTTGTGT 58.286 29.630 0.00 0.00 0.00 3.72
373 374 8.581057 TCATAAAGTTCTTGCGCATTTAAAAA 57.419 26.923 12.75 0.00 0.00 1.94
374 375 8.646356 CATCATAAAGTTCTTGCGCATTTAAAA 58.354 29.630 12.75 5.83 0.00 1.52
375 376 7.275341 CCATCATAAAGTTCTTGCGCATTTAAA 59.725 33.333 12.75 6.18 0.00 1.52
376 377 6.751425 CCATCATAAAGTTCTTGCGCATTTAA 59.249 34.615 12.75 2.77 0.00 1.52
377 378 6.127758 ACCATCATAAAGTTCTTGCGCATTTA 60.128 34.615 12.75 13.37 0.00 1.40
378 379 5.104374 CCATCATAAAGTTCTTGCGCATTT 58.896 37.500 12.75 11.31 0.00 2.32
379 380 4.158394 ACCATCATAAAGTTCTTGCGCATT 59.842 37.500 12.75 3.43 0.00 3.56
380 381 3.696051 ACCATCATAAAGTTCTTGCGCAT 59.304 39.130 12.75 0.00 0.00 4.73
381 382 3.081061 ACCATCATAAAGTTCTTGCGCA 58.919 40.909 5.66 5.66 0.00 6.09
382 383 3.764885 ACCATCATAAAGTTCTTGCGC 57.235 42.857 0.00 0.00 0.00 6.09
383 384 6.603237 TCATACCATCATAAAGTTCTTGCG 57.397 37.500 0.00 0.00 0.00 4.85
467 468 9.798885 CTTTTAAAATGTTCACGTGTTTCAAAA 57.201 25.926 16.51 11.80 0.00 2.44
468 469 8.979574 ACTTTTAAAATGTTCACGTGTTTCAAA 58.020 25.926 16.51 10.70 0.00 2.69
469 470 8.522178 ACTTTTAAAATGTTCACGTGTTTCAA 57.478 26.923 16.51 3.48 0.00 2.69
470 471 7.808381 TGACTTTTAAAATGTTCACGTGTTTCA 59.192 29.630 16.51 13.12 0.00 2.69
471 472 8.099704 GTGACTTTTAAAATGTTCACGTGTTTC 58.900 33.333 16.51 7.83 0.00 2.78
472 473 7.595502 TGTGACTTTTAAAATGTTCACGTGTTT 59.404 29.630 16.51 10.65 0.00 2.83
473 474 7.085116 TGTGACTTTTAAAATGTTCACGTGTT 58.915 30.769 16.51 3.65 0.00 3.32
474 475 6.613233 TGTGACTTTTAAAATGTTCACGTGT 58.387 32.000 16.51 7.70 0.00 4.49
475 476 7.499438 TTGTGACTTTTAAAATGTTCACGTG 57.501 32.000 21.01 9.94 0.00 4.49
476 477 7.595502 TGTTTGTGACTTTTAAAATGTTCACGT 59.404 29.630 21.01 8.77 0.00 4.49
477 478 7.943952 TGTTTGTGACTTTTAAAATGTTCACG 58.056 30.769 21.01 6.37 0.00 4.35
489 490 7.750014 GCATTCAAAACAATGTTTGTGACTTTT 59.250 29.630 12.50 0.00 44.59 2.27
490 491 7.119553 AGCATTCAAAACAATGTTTGTGACTTT 59.880 29.630 12.50 4.18 44.59 2.66
491 492 6.594937 AGCATTCAAAACAATGTTTGTGACTT 59.405 30.769 12.50 6.15 44.59 3.01
492 493 6.108015 AGCATTCAAAACAATGTTTGTGACT 58.892 32.000 12.50 9.32 44.59 3.41
493 494 6.348621 AGCATTCAAAACAATGTTTGTGAC 57.651 33.333 12.50 6.95 44.59 3.67
494 495 6.478344 GGTAGCATTCAAAACAATGTTTGTGA 59.522 34.615 12.50 13.97 44.59 3.58
495 496 6.257411 TGGTAGCATTCAAAACAATGTTTGTG 59.743 34.615 12.50 12.10 44.59 3.33
497 498 6.841443 TGGTAGCATTCAAAACAATGTTTG 57.159 33.333 12.50 6.99 39.41 2.93
498 499 7.856145 TTTGGTAGCATTCAAAACAATGTTT 57.144 28.000 5.41 5.41 36.32 2.83
499 500 8.449251 AATTTGGTAGCATTCAAAACAATGTT 57.551 26.923 0.00 0.00 36.60 2.71
500 501 8.449251 AAATTTGGTAGCATTCAAAACAATGT 57.551 26.923 0.00 0.00 36.60 2.71
501 502 9.733219 AAAAATTTGGTAGCATTCAAAACAATG 57.267 25.926 0.00 0.00 36.60 2.82
545 546 9.709495 ACAATGTTCATGCAGTGTAAAAATTAT 57.291 25.926 4.86 0.00 44.35 1.28
546 547 9.539825 AACAATGTTCATGCAGTGTAAAAATTA 57.460 25.926 6.81 0.00 45.24 1.40
547 548 8.436046 AACAATGTTCATGCAGTGTAAAAATT 57.564 26.923 6.81 0.00 45.24 1.82
548 549 8.436046 AAACAATGTTCATGCAGTGTAAAAAT 57.564 26.923 6.81 0.00 45.24 1.82
549 550 7.840342 AAACAATGTTCATGCAGTGTAAAAA 57.160 28.000 6.81 0.00 45.24 1.94
550 551 8.932945 TTAAACAATGTTCATGCAGTGTAAAA 57.067 26.923 6.81 3.06 45.24 1.52
551 552 8.932945 TTTAAACAATGTTCATGCAGTGTAAA 57.067 26.923 6.81 3.37 45.24 2.01
552 553 8.976471 CATTTAAACAATGTTCATGCAGTGTAA 58.024 29.630 6.81 0.18 45.24 2.41
553 554 7.116090 GCATTTAAACAATGTTCATGCAGTGTA 59.884 33.333 22.40 0.00 45.24 2.90
555 556 6.301108 GCATTTAAACAATGTTCATGCAGTG 58.699 36.000 22.40 9.30 39.92 3.66
556 557 5.118971 CGCATTTAAACAATGTTCATGCAGT 59.881 36.000 24.71 4.68 36.20 4.40
557 558 5.118971 ACGCATTTAAACAATGTTCATGCAG 59.881 36.000 24.71 20.75 36.20 4.41
558 559 4.987285 ACGCATTTAAACAATGTTCATGCA 59.013 33.333 24.71 0.00 36.20 3.96
559 560 5.118357 TCACGCATTTAAACAATGTTCATGC 59.882 36.000 19.60 19.60 33.66 4.06
560 561 6.687653 TCACGCATTTAAACAATGTTCATG 57.312 33.333 0.00 4.06 0.00 3.07
561 562 6.365789 CCTTCACGCATTTAAACAATGTTCAT 59.634 34.615 0.00 0.00 0.00 2.57
562 563 5.689514 CCTTCACGCATTTAAACAATGTTCA 59.310 36.000 0.00 0.00 0.00 3.18
563 564 5.918011 TCCTTCACGCATTTAAACAATGTTC 59.082 36.000 0.00 0.00 0.00 3.18
564 565 5.837437 TCCTTCACGCATTTAAACAATGTT 58.163 33.333 0.00 0.00 0.00 2.71
565 566 5.446143 TCCTTCACGCATTTAAACAATGT 57.554 34.783 0.00 0.00 0.00 2.71
566 567 5.220265 GCATCCTTCACGCATTTAAACAATG 60.220 40.000 0.00 0.00 0.00 2.82
567 568 4.864247 GCATCCTTCACGCATTTAAACAAT 59.136 37.500 0.00 0.00 0.00 2.71
568 569 4.022416 AGCATCCTTCACGCATTTAAACAA 60.022 37.500 0.00 0.00 0.00 2.83
569 570 3.505680 AGCATCCTTCACGCATTTAAACA 59.494 39.130 0.00 0.00 0.00 2.83
570 571 4.096732 AGCATCCTTCACGCATTTAAAC 57.903 40.909 0.00 0.00 0.00 2.01
571 572 4.782019 AAGCATCCTTCACGCATTTAAA 57.218 36.364 0.00 0.00 0.00 1.52
572 573 4.217334 TGAAAGCATCCTTCACGCATTTAA 59.783 37.500 0.00 0.00 0.00 1.52
573 574 3.755905 TGAAAGCATCCTTCACGCATTTA 59.244 39.130 0.00 0.00 0.00 1.40
574 575 2.557924 TGAAAGCATCCTTCACGCATTT 59.442 40.909 0.00 0.00 0.00 2.32
575 576 2.161855 TGAAAGCATCCTTCACGCATT 58.838 42.857 0.00 0.00 0.00 3.56
576 577 1.825090 TGAAAGCATCCTTCACGCAT 58.175 45.000 0.00 0.00 0.00 4.73
577 578 1.603456 TTGAAAGCATCCTTCACGCA 58.397 45.000 0.00 0.00 0.00 5.24
578 579 2.704725 TTTGAAAGCATCCTTCACGC 57.295 45.000 0.00 0.00 0.00 5.34
579 580 7.541783 TCATAAATTTTGAAAGCATCCTTCACG 59.458 33.333 0.00 0.00 0.00 4.35
580 581 8.761575 TCATAAATTTTGAAAGCATCCTTCAC 57.238 30.769 0.00 0.00 0.00 3.18
581 582 9.775854 TTTCATAAATTTTGAAAGCATCCTTCA 57.224 25.926 17.23 0.00 37.97 3.02
626 627 9.092876 GGTTTGTATTGAGAACAAATTTCAACA 57.907 29.630 4.86 0.00 45.62 3.33
627 628 9.092876 TGGTTTGTATTGAGAACAAATTTCAAC 57.907 29.630 4.86 0.00 45.62 3.18
628 629 9.658799 TTGGTTTGTATTGAGAACAAATTTCAA 57.341 25.926 4.86 7.46 45.62 2.69
629 630 9.658799 TTTGGTTTGTATTGAGAACAAATTTCA 57.341 25.926 4.86 2.75 45.62 2.69
632 633 9.665719 ACTTTTGGTTTGTATTGAGAACAAATT 57.334 25.926 4.86 0.00 45.62 1.82
633 634 9.665719 AACTTTTGGTTTGTATTGAGAACAAAT 57.334 25.926 4.86 0.00 45.62 2.32
646 647 9.214957 CTCTTTCCTTTTTAACTTTTGGTTTGT 57.785 29.630 0.00 0.00 39.17 2.83
647 648 9.430623 TCTCTTTCCTTTTTAACTTTTGGTTTG 57.569 29.630 0.00 0.00 39.17 2.93
657 658 9.099820 CGTTCGTTTATCTCTTTCCTTTTTAAC 57.900 33.333 0.00 0.00 0.00 2.01
658 659 9.044150 TCGTTCGTTTATCTCTTTCCTTTTTAA 57.956 29.630 0.00 0.00 0.00 1.52
659 660 8.592105 TCGTTCGTTTATCTCTTTCCTTTTTA 57.408 30.769 0.00 0.00 0.00 1.52
660 661 7.486802 TCGTTCGTTTATCTCTTTCCTTTTT 57.513 32.000 0.00 0.00 0.00 1.94
661 662 7.350467 GTTCGTTCGTTTATCTCTTTCCTTTT 58.650 34.615 0.00 0.00 0.00 2.27
662 663 6.346359 CGTTCGTTCGTTTATCTCTTTCCTTT 60.346 38.462 0.00 0.00 0.00 3.11
663 664 5.118203 CGTTCGTTCGTTTATCTCTTTCCTT 59.882 40.000 0.00 0.00 0.00 3.36
664 665 4.620184 CGTTCGTTCGTTTATCTCTTTCCT 59.380 41.667 0.00 0.00 0.00 3.36
665 666 4.618489 TCGTTCGTTCGTTTATCTCTTTCC 59.382 41.667 2.67 0.00 0.00 3.13
666 667 5.736040 TCGTTCGTTCGTTTATCTCTTTC 57.264 39.130 2.67 0.00 0.00 2.62
667 668 5.118203 CCTTCGTTCGTTCGTTTATCTCTTT 59.882 40.000 2.67 0.00 0.00 2.52
668 669 4.620184 CCTTCGTTCGTTCGTTTATCTCTT 59.380 41.667 2.67 0.00 0.00 2.85
669 670 4.083110 TCCTTCGTTCGTTCGTTTATCTCT 60.083 41.667 2.67 0.00 0.00 3.10
670 671 4.161333 TCCTTCGTTCGTTCGTTTATCTC 58.839 43.478 2.67 0.00 0.00 2.75
671 672 4.164294 CTCCTTCGTTCGTTCGTTTATCT 58.836 43.478 2.67 0.00 0.00 1.98
672 673 3.302699 CCTCCTTCGTTCGTTCGTTTATC 59.697 47.826 2.67 0.00 0.00 1.75
673 674 3.248266 CCTCCTTCGTTCGTTCGTTTAT 58.752 45.455 2.67 0.00 0.00 1.40
674 675 2.607771 CCCTCCTTCGTTCGTTCGTTTA 60.608 50.000 2.67 0.00 0.00 2.01
675 676 1.494824 CCTCCTTCGTTCGTTCGTTT 58.505 50.000 2.67 0.00 0.00 3.60
676 677 0.319297 CCCTCCTTCGTTCGTTCGTT 60.319 55.000 2.67 0.00 0.00 3.85
677 678 1.174712 TCCCTCCTTCGTTCGTTCGT 61.175 55.000 2.67 0.00 0.00 3.85
678 679 0.038892 TTCCCTCCTTCGTTCGTTCG 60.039 55.000 0.00 0.00 0.00 3.95
679 680 1.000618 AGTTCCCTCCTTCGTTCGTTC 59.999 52.381 0.00 0.00 0.00 3.95
680 681 1.046204 AGTTCCCTCCTTCGTTCGTT 58.954 50.000 0.00 0.00 0.00 3.85
681 682 1.915141 TAGTTCCCTCCTTCGTTCGT 58.085 50.000 0.00 0.00 0.00 3.85
682 683 2.603953 GTTAGTTCCCTCCTTCGTTCG 58.396 52.381 0.00 0.00 0.00 3.95
683 684 2.029560 ACGTTAGTTCCCTCCTTCGTTC 60.030 50.000 0.00 0.00 0.00 3.95
684 685 1.966354 ACGTTAGTTCCCTCCTTCGTT 59.034 47.619 0.00 0.00 0.00 3.85
685 686 1.625511 ACGTTAGTTCCCTCCTTCGT 58.374 50.000 0.00 0.00 0.00 3.85
686 687 2.738013 AACGTTAGTTCCCTCCTTCG 57.262 50.000 0.00 0.00 35.23 3.79
696 697 5.967674 CCGTTAGATGATACGAACGTTAGTT 59.032 40.000 19.18 7.53 43.40 2.24
697 698 5.504665 CCCGTTAGATGATACGAACGTTAGT 60.505 44.000 18.10 18.10 43.40 2.24
698 699 4.908156 CCCGTTAGATGATACGAACGTTAG 59.092 45.833 0.00 3.14 43.40 2.34
699 700 4.789481 GCCCGTTAGATGATACGAACGTTA 60.789 45.833 0.00 0.00 43.40 3.18
700 701 3.699067 CCCGTTAGATGATACGAACGTT 58.301 45.455 0.00 0.00 43.40 3.99
701 702 2.542411 GCCCGTTAGATGATACGAACGT 60.542 50.000 5.03 5.03 43.40 3.99
702 703 2.049228 GCCCGTTAGATGATACGAACG 58.951 52.381 0.00 0.00 44.08 3.95
703 704 2.049228 CGCCCGTTAGATGATACGAAC 58.951 52.381 0.00 0.00 40.03 3.95
704 705 1.948834 TCGCCCGTTAGATGATACGAA 59.051 47.619 0.00 0.00 40.03 3.85
705 706 1.534163 CTCGCCCGTTAGATGATACGA 59.466 52.381 0.00 0.00 40.03 3.43
706 707 1.965083 CTCGCCCGTTAGATGATACG 58.035 55.000 0.00 0.00 37.50 3.06
707 708 1.669211 GGCTCGCCCGTTAGATGATAC 60.669 57.143 0.00 0.00 0.00 2.24
708 709 0.601558 GGCTCGCCCGTTAGATGATA 59.398 55.000 0.00 0.00 0.00 2.15
709 710 1.367840 GGCTCGCCCGTTAGATGAT 59.632 57.895 0.00 0.00 0.00 2.45
710 711 2.812499 GGCTCGCCCGTTAGATGA 59.188 61.111 0.00 0.00 0.00 2.92
722 723 3.414700 GACGCTGTTGTGGGCTCG 61.415 66.667 0.00 0.00 0.00 5.03
723 724 2.029844 GAGACGCTGTTGTGGGCTC 61.030 63.158 0.00 0.00 0.00 4.70
724 725 1.185618 TAGAGACGCTGTTGTGGGCT 61.186 55.000 0.00 0.00 0.00 5.19
725 726 0.737715 CTAGAGACGCTGTTGTGGGC 60.738 60.000 0.00 0.00 0.00 5.36
726 727 0.108615 CCTAGAGACGCTGTTGTGGG 60.109 60.000 0.00 0.00 0.00 4.61
727 728 0.108615 CCCTAGAGACGCTGTTGTGG 60.109 60.000 0.00 0.00 0.00 4.17
728 729 0.603569 ACCCTAGAGACGCTGTTGTG 59.396 55.000 0.00 0.00 0.00 3.33
729 730 1.000955 CAACCCTAGAGACGCTGTTGT 59.999 52.381 0.00 0.00 0.00 3.32
730 731 1.673033 CCAACCCTAGAGACGCTGTTG 60.673 57.143 0.00 0.00 34.39 3.33
731 732 0.608640 CCAACCCTAGAGACGCTGTT 59.391 55.000 0.00 0.00 0.00 3.16
732 733 1.889530 GCCAACCCTAGAGACGCTGT 61.890 60.000 0.00 0.00 0.00 4.40
733 734 1.153549 GCCAACCCTAGAGACGCTG 60.154 63.158 0.00 0.00 0.00 5.18
734 735 1.305381 AGCCAACCCTAGAGACGCT 60.305 57.895 0.00 0.00 0.00 5.07
735 736 1.153549 CAGCCAACCCTAGAGACGC 60.154 63.158 0.00 0.00 0.00 5.19
736 737 1.153549 GCAGCCAACCCTAGAGACG 60.154 63.158 0.00 0.00 0.00 4.18
737 738 1.486211 TAGCAGCCAACCCTAGAGAC 58.514 55.000 0.00 0.00 0.00 3.36
738 739 2.320781 GATAGCAGCCAACCCTAGAGA 58.679 52.381 0.00 0.00 0.00 3.10
739 740 1.000283 CGATAGCAGCCAACCCTAGAG 60.000 57.143 0.00 0.00 0.00 2.43
740 741 1.040646 CGATAGCAGCCAACCCTAGA 58.959 55.000 0.00 0.00 0.00 2.43
741 742 1.040646 TCGATAGCAGCCAACCCTAG 58.959 55.000 0.00 0.00 0.00 3.02
742 743 0.750850 GTCGATAGCAGCCAACCCTA 59.249 55.000 0.00 0.00 0.00 3.53
743 744 0.978146 AGTCGATAGCAGCCAACCCT 60.978 55.000 0.00 0.00 0.00 4.34
744 745 0.811616 CAGTCGATAGCAGCCAACCC 60.812 60.000 0.00 0.00 0.00 4.11
745 746 0.108138 ACAGTCGATAGCAGCCAACC 60.108 55.000 0.00 0.00 0.00 3.77
746 747 1.002366 CACAGTCGATAGCAGCCAAC 58.998 55.000 0.00 0.00 0.00 3.77
747 748 0.108186 CCACAGTCGATAGCAGCCAA 60.108 55.000 0.00 0.00 0.00 4.52
748 749 1.257750 ACCACAGTCGATAGCAGCCA 61.258 55.000 0.00 0.00 0.00 4.75
749 750 0.528684 GACCACAGTCGATAGCAGCC 60.529 60.000 0.00 0.00 32.18 4.85
750 751 0.173481 TGACCACAGTCGATAGCAGC 59.827 55.000 0.00 0.00 46.74 5.25
751 752 2.654749 TTGACCACAGTCGATAGCAG 57.345 50.000 0.00 0.00 46.74 4.24
752 753 3.261580 CATTTGACCACAGTCGATAGCA 58.738 45.455 0.00 0.00 46.74 3.49
753 754 2.609459 CCATTTGACCACAGTCGATAGC 59.391 50.000 0.00 0.00 46.74 2.97
754 755 3.198068 CCCATTTGACCACAGTCGATAG 58.802 50.000 0.00 0.00 46.74 2.08
755 756 2.093181 CCCCATTTGACCACAGTCGATA 60.093 50.000 0.00 0.00 46.74 2.92
756 757 1.340017 CCCCATTTGACCACAGTCGAT 60.340 52.381 0.00 0.00 46.74 3.59
757 758 0.036164 CCCCATTTGACCACAGTCGA 59.964 55.000 0.00 0.00 46.74 4.20
758 759 1.586154 GCCCCATTTGACCACAGTCG 61.586 60.000 0.00 0.00 46.74 4.18
759 760 1.250840 GGCCCCATTTGACCACAGTC 61.251 60.000 0.00 0.00 43.83 3.51
760 761 1.228862 GGCCCCATTTGACCACAGT 60.229 57.895 0.00 0.00 0.00 3.55
761 762 1.984026 GGGCCCCATTTGACCACAG 60.984 63.158 12.23 0.00 0.00 3.66
762 763 2.104359 ATGGGCCCCATTTGACCACA 62.104 55.000 22.27 0.00 42.23 4.17
763 764 0.032615 TATGGGCCCCATTTGACCAC 60.033 55.000 22.99 0.00 42.23 4.16
764 765 0.940452 ATATGGGCCCCATTTGACCA 59.060 50.000 22.99 0.91 42.23 4.02
765 766 1.133199 TCATATGGGCCCCATTTGACC 60.133 52.381 26.40 0.00 43.40 4.02
766 767 2.365293 GTTCATATGGGCCCCATTTGAC 59.635 50.000 28.98 21.05 46.18 3.18
767 768 2.676748 GTTCATATGGGCCCCATTTGA 58.323 47.619 26.40 26.40 45.37 2.69
768 769 1.693606 GGTTCATATGGGCCCCATTTG 59.306 52.381 22.99 23.04 42.23 2.32
769 770 1.414392 GGGTTCATATGGGCCCCATTT 60.414 52.381 22.99 10.79 42.23 2.32
770 771 0.190815 GGGTTCATATGGGCCCCATT 59.809 55.000 22.99 6.08 42.23 3.16
771 772 1.860696 GGGTTCATATGGGCCCCAT 59.139 57.895 21.37 21.37 46.99 4.00
772 773 3.352512 GGGTTCATATGGGCCCCA 58.647 61.111 22.27 4.05 38.19 4.96
774 775 1.154430 TTAGGGGTTCATATGGGCCC 58.846 55.000 17.59 17.59 40.35 5.80
775 776 3.322191 TTTTAGGGGTTCATATGGGCC 57.678 47.619 2.13 0.00 0.00 5.80
795 796 5.368230 ACGATAATATGGGCCCCAAATTTTT 59.632 36.000 22.27 7.41 36.95 1.94
796 797 4.904853 ACGATAATATGGGCCCCAAATTTT 59.095 37.500 22.27 11.13 36.95 1.82
797 798 4.488770 ACGATAATATGGGCCCCAAATTT 58.511 39.130 22.27 8.53 36.95 1.82
798 799 4.086457 GACGATAATATGGGCCCCAAATT 58.914 43.478 22.27 17.98 36.95 1.82
799 800 3.333680 AGACGATAATATGGGCCCCAAAT 59.666 43.478 22.27 9.12 36.95 2.32
800 801 2.714250 AGACGATAATATGGGCCCCAAA 59.286 45.455 22.27 4.47 36.95 3.28
801 802 2.039746 CAGACGATAATATGGGCCCCAA 59.960 50.000 22.27 7.64 36.95 4.12
802 803 1.628340 CAGACGATAATATGGGCCCCA 59.372 52.381 22.27 4.05 38.19 4.96
803 804 1.906574 TCAGACGATAATATGGGCCCC 59.093 52.381 22.27 0.85 0.00 5.80
804 805 3.695830 TTCAGACGATAATATGGGCCC 57.304 47.619 17.59 17.59 0.00 5.80
805 806 4.396166 CCATTTCAGACGATAATATGGGCC 59.604 45.833 0.00 0.00 0.00 5.80
806 807 4.142600 GCCATTTCAGACGATAATATGGGC 60.143 45.833 0.00 0.00 33.37 5.36
807 808 5.248640 AGCCATTTCAGACGATAATATGGG 58.751 41.667 0.00 0.00 33.37 4.00
808 809 5.934043 TGAGCCATTTCAGACGATAATATGG 59.066 40.000 0.00 0.00 35.34 2.74
809 810 7.360691 CCTTGAGCCATTTCAGACGATAATATG 60.361 40.741 0.00 0.00 0.00 1.78
810 811 6.652481 CCTTGAGCCATTTCAGACGATAATAT 59.348 38.462 0.00 0.00 0.00 1.28
811 812 5.991606 CCTTGAGCCATTTCAGACGATAATA 59.008 40.000 0.00 0.00 0.00 0.98
812 813 4.818546 CCTTGAGCCATTTCAGACGATAAT 59.181 41.667 0.00 0.00 0.00 1.28
813 814 4.191544 CCTTGAGCCATTTCAGACGATAA 58.808 43.478 0.00 0.00 0.00 1.75
814 815 3.432186 CCCTTGAGCCATTTCAGACGATA 60.432 47.826 0.00 0.00 0.00 2.92
815 816 2.636830 CCTTGAGCCATTTCAGACGAT 58.363 47.619 0.00 0.00 0.00 3.73
816 817 1.339055 CCCTTGAGCCATTTCAGACGA 60.339 52.381 0.00 0.00 0.00 4.20
817 818 1.089920 CCCTTGAGCCATTTCAGACG 58.910 55.000 0.00 0.00 0.00 4.18
818 819 0.813821 GCCCTTGAGCCATTTCAGAC 59.186 55.000 0.00 0.00 0.00 3.51
819 820 3.271250 GCCCTTGAGCCATTTCAGA 57.729 52.632 0.00 0.00 0.00 3.27
828 829 1.220477 GAGAGAGTGGCCCTTGAGC 59.780 63.158 0.00 0.00 0.00 4.26
829 830 1.515020 CGAGAGAGTGGCCCTTGAG 59.485 63.158 0.00 0.00 0.00 3.02
830 831 1.984570 CCGAGAGAGTGGCCCTTGA 60.985 63.158 0.00 0.00 0.00 3.02
831 832 2.581354 CCGAGAGAGTGGCCCTTG 59.419 66.667 0.00 0.00 0.00 3.61
832 833 3.394836 GCCGAGAGAGTGGCCCTT 61.395 66.667 0.00 0.00 45.73 3.95
837 838 2.849120 CTTGGCTGCCGAGAGAGTGG 62.849 65.000 28.61 2.31 37.20 4.00
838 839 1.447489 CTTGGCTGCCGAGAGAGTG 60.447 63.158 28.61 3.08 37.20 3.51
839 840 1.188219 TTCTTGGCTGCCGAGAGAGT 61.188 55.000 31.62 0.00 44.04 3.24
840 841 0.459934 CTTCTTGGCTGCCGAGAGAG 60.460 60.000 31.62 26.36 44.04 3.20
841 842 0.900182 TCTTCTTGGCTGCCGAGAGA 60.900 55.000 31.62 26.85 44.04 3.10
842 843 0.177604 ATCTTCTTGGCTGCCGAGAG 59.822 55.000 31.62 25.44 44.04 3.20
843 844 0.176680 GATCTTCTTGGCTGCCGAGA 59.823 55.000 30.49 30.49 41.88 4.04
844 845 0.177604 AGATCTTCTTGGCTGCCGAG 59.822 55.000 27.02 27.02 36.39 4.63
845 846 0.176680 GAGATCTTCTTGGCTGCCGA 59.823 55.000 14.98 11.82 0.00 5.54
846 847 0.813210 GGAGATCTTCTTGGCTGCCG 60.813 60.000 14.98 0.00 0.00 5.69
847 848 0.254178 TGGAGATCTTCTTGGCTGCC 59.746 55.000 12.87 12.87 0.00 4.85
848 849 1.666054 CTGGAGATCTTCTTGGCTGC 58.334 55.000 1.86 0.00 0.00 5.25
849 850 1.666054 GCTGGAGATCTTCTTGGCTG 58.334 55.000 1.86 0.00 0.00 4.85
850 851 0.545646 GGCTGGAGATCTTCTTGGCT 59.454 55.000 1.86 0.00 0.00 4.75
851 852 0.813210 CGGCTGGAGATCTTCTTGGC 60.813 60.000 1.86 6.80 0.00 4.52
852 853 0.539051 ACGGCTGGAGATCTTCTTGG 59.461 55.000 1.86 0.00 0.00 3.61
853 854 2.393271 AACGGCTGGAGATCTTCTTG 57.607 50.000 1.86 0.00 0.00 3.02
854 855 2.569404 AGAAACGGCTGGAGATCTTCTT 59.431 45.455 1.86 0.00 0.00 2.52
855 856 2.093764 CAGAAACGGCTGGAGATCTTCT 60.094 50.000 1.86 0.00 32.26 2.85
856 857 2.093973 TCAGAAACGGCTGGAGATCTTC 60.094 50.000 0.00 0.00 36.55 2.87
857 858 1.902508 TCAGAAACGGCTGGAGATCTT 59.097 47.619 0.00 0.00 36.55 2.40
858 859 1.561643 TCAGAAACGGCTGGAGATCT 58.438 50.000 0.00 0.00 36.55 2.75
859 860 2.386661 TTCAGAAACGGCTGGAGATC 57.613 50.000 0.00 0.00 36.55 2.75
860 861 2.859165 TTTCAGAAACGGCTGGAGAT 57.141 45.000 0.00 0.00 36.55 2.75
861 862 2.631160 TTTTCAGAAACGGCTGGAGA 57.369 45.000 0.00 0.00 36.55 3.71
889 890 2.029918 GGCAGTTTGGCTCGAGATTTTT 60.030 45.455 18.75 0.00 40.14 1.94
890 891 1.541588 GGCAGTTTGGCTCGAGATTTT 59.458 47.619 18.75 0.00 40.14 1.82
891 892 1.168714 GGCAGTTTGGCTCGAGATTT 58.831 50.000 18.75 0.00 40.14 2.17
892 893 1.021390 CGGCAGTTTGGCTCGAGATT 61.021 55.000 18.75 0.00 41.25 2.40
893 894 1.448540 CGGCAGTTTGGCTCGAGAT 60.449 57.895 18.75 0.00 41.25 2.75
894 895 2.048222 CGGCAGTTTGGCTCGAGA 60.048 61.111 18.75 0.00 41.25 4.04
895 896 3.121030 CCGGCAGTTTGGCTCGAG 61.121 66.667 8.45 8.45 41.25 4.04
896 897 4.697756 CCCGGCAGTTTGGCTCGA 62.698 66.667 0.00 0.00 41.25 4.04
1062 1063 4.704103 TGGAGCGGCAGGAGGACT 62.704 66.667 1.45 0.00 0.00 3.85
1063 1064 4.459089 GTGGAGCGGCAGGAGGAC 62.459 72.222 1.45 0.00 0.00 3.85
1131 1506 1.096386 CGTAGAGGGAGACGAGGGTG 61.096 65.000 0.00 0.00 41.60 4.61
1206 1584 3.435186 GCGTTGAAGCAGGGGAGC 61.435 66.667 0.00 0.00 37.05 4.70
1656 2034 2.032634 CACCACCATCCCGTGAACG 61.033 63.158 0.00 0.00 35.68 3.95
1686 2064 0.941542 ACACGGAAACATTGTGGTCG 59.058 50.000 0.00 0.00 37.92 4.79
1751 2129 2.126888 CAAACACCATCGCCGCAC 60.127 61.111 0.00 0.00 0.00 5.34
1758 2136 1.767759 CCATCCCCTCAAACACCATC 58.232 55.000 0.00 0.00 0.00 3.51
1944 2322 1.059584 TCCTCCCAACCTTCAGTGCA 61.060 55.000 0.00 0.00 0.00 4.57
1985 2363 4.193334 CGCGAGCCAGTCCGATCA 62.193 66.667 0.00 0.00 0.00 2.92
2034 2412 2.620251 TGGCATACATGTCTACCAGC 57.380 50.000 0.00 0.00 32.56 4.85
2336 2722 1.431496 CATGTCAGTCACACATGCGA 58.569 50.000 0.00 0.00 43.48 5.10
2409 2795 1.140452 CATGCACCAGCTCCTACATCT 59.860 52.381 0.00 0.00 42.74 2.90
2684 3073 0.663269 GCCACTAACAAAAGCGTGCC 60.663 55.000 0.00 0.00 0.00 5.01
2941 3330 0.766131 TTGGCGAAACCCTCTTACCA 59.234 50.000 0.00 0.00 37.83 3.25
3230 3619 2.159128 ACAGAGAAGATGCTGATCACCG 60.159 50.000 0.00 0.00 36.07 4.94
3502 4073 2.974794 TGGTAGAGTATGCTGCCATGAT 59.025 45.455 0.00 0.00 44.25 2.45
3503 4074 2.397597 TGGTAGAGTATGCTGCCATGA 58.602 47.619 0.00 0.00 44.25 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.