Multiple sequence alignment - TraesCS3A01G341400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G341400 chr3A 100.000 5290 0 0 1 5290 588823037 588828326 0.000000e+00 9769.0
1 TraesCS3A01G341400 chr3A 89.024 246 5 6 1644 1878 588824639 588824873 8.670000e-73 285.0
2 TraesCS3A01G341400 chr3A 89.024 246 5 6 1603 1837 588824680 588824914 8.670000e-73 285.0
3 TraesCS3A01G341400 chr3A 92.121 165 2 1 1714 1878 588824679 588824832 6.900000e-54 222.0
4 TraesCS3A01G341400 chr3A 92.121 165 2 1 1643 1796 588824750 588824914 6.900000e-54 222.0
5 TraesCS3A01G341400 chr3A 90.854 164 4 1 1715 1878 588824639 588824791 5.370000e-50 209.0
6 TraesCS3A01G341400 chr3A 90.854 164 4 1 1603 1755 588824751 588824914 5.370000e-50 209.0
7 TraesCS3A01G341400 chr3A 96.667 120 4 0 1756 1875 588824639 588824758 3.230000e-47 200.0
8 TraesCS3A01G341400 chr3A 96.667 120 4 0 1603 1722 588824792 588824911 3.230000e-47 200.0
9 TraesCS3A01G341400 chr3A 96.341 82 3 0 1797 1878 588824639 588824720 9.240000e-28 135.0
10 TraesCS3A01G341400 chr3A 96.341 82 3 0 1603 1684 588824833 588824914 9.240000e-28 135.0
11 TraesCS3A01G341400 chr3A 94.444 36 2 0 4076 4111 588827063 588827098 7.400000e-04 56.5
12 TraesCS3A01G341400 chr3A 94.444 36 2 0 4027 4062 588827112 588827147 7.400000e-04 56.5
13 TraesCS3A01G341400 chr3B 91.676 3448 156 50 1756 5148 586511038 586514409 0.000000e+00 4656.0
14 TraesCS3A01G341400 chr3B 86.497 1733 97 56 48 1722 586509482 586511135 0.000000e+00 1777.0
15 TraesCS3A01G341400 chr3B 88.393 112 2 1 1685 1796 586511038 586511138 2.000000e-24 124.0
16 TraesCS3A01G341400 chr3B 81.301 123 1 2 1715 1837 586511038 586511138 4.390000e-11 80.5
17 TraesCS3A01G341400 chr3B 86.076 79 0 1 1797 1875 586511038 586511105 2.040000e-09 75.0
18 TraesCS3A01G341400 chr3B 100.000 38 0 0 1838 1875 586511038 586511075 2.640000e-08 71.3
19 TraesCS3A01G341400 chr3B 94.444 36 2 0 4076 4111 586513290 586513325 7.400000e-04 56.5
20 TraesCS3A01G341400 chr3D 95.096 2182 77 11 1715 3884 447124316 447126479 0.000000e+00 3410.0
21 TraesCS3A01G341400 chr3D 89.937 1739 79 37 55 1755 447122788 447124468 0.000000e+00 2154.0
22 TraesCS3A01G341400 chr3D 85.672 1005 80 35 4109 5083 447126720 447127690 0.000000e+00 1000.0
23 TraesCS3A01G341400 chr3D 93.452 168 11 0 5120 5287 447127934 447128101 3.160000e-62 250.0
24 TraesCS3A01G341400 chr3D 83.486 218 22 6 31 241 447120412 447120622 1.940000e-44 191.0
25 TraesCS3A01G341400 chr3D 92.553 94 5 2 3976 4069 447126622 447126713 3.320000e-27 134.0
26 TraesCS3A01G341400 chr3D 100.000 58 0 0 3917 3974 447126481 447126538 2.010000e-19 108.0
27 TraesCS3A01G341400 chr3D 100.000 28 0 0 4076 4103 447126671 447126698 1.000000e-02 52.8
28 TraesCS3A01G341400 chr4A 88.333 120 14 0 1085 1204 178985452 178985571 1.540000e-30 145.0
29 TraesCS3A01G341400 chr4D 89.189 111 12 0 1094 1204 301810277 301810167 7.140000e-29 139.0
30 TraesCS3A01G341400 chr4B 89.189 111 12 0 1094 1204 376257473 376257363 7.140000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G341400 chr3A 588823037 588828326 5289 False 921.846154 9769 93.761692 1 5290 13 chr3A.!!$F1 5289
1 TraesCS3A01G341400 chr3B 586509482 586514409 4927 False 977.185714 4656 89.769571 48 5148 7 chr3B.!!$F1 5100
2 TraesCS3A01G341400 chr3D 447120412 447128101 7689 False 912.475000 3410 92.524500 31 5287 8 chr3D.!!$F1 5256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 3373 0.033991 GAAGGGGAAAAGGAGGGCTC 60.034 60.000 0.0 0.0 0.00 4.70 F
1796 4216 1.129251 TCCGAGTACGACAAACTAGCG 59.871 52.381 0.0 0.0 42.66 4.26 F
1797 4217 1.129251 CCGAGTACGACAAACTAGCGA 59.871 52.381 0.0 0.0 42.66 4.93 F
2224 4644 1.276421 AGTAACTCTGCCGTGATTGCT 59.724 47.619 0.0 0.0 0.00 3.91 F
2973 5398 1.354368 TCGAGGGGAATCAAAAAGGCT 59.646 47.619 0.0 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2754 5179 0.038892 GCACCAACCTGCATCAAGTG 60.039 55.0 0.00 0.0 37.11 3.16 R
2758 5183 0.608856 AATCGCACCAACCTGCATCA 60.609 50.0 0.00 0.0 36.94 3.07 R
2759 5184 1.378531 TAATCGCACCAACCTGCATC 58.621 50.0 0.00 0.0 36.94 3.91 R
3610 6053 2.804527 CGCATCTCCTCACATACAATGG 59.195 50.0 0.00 0.0 33.60 3.16 R
4643 7179 0.111832 ATATGGGCAGGCACCAGATG 59.888 55.0 7.72 0.0 42.15 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.419921 CCCCACCTACGCCCCAAC 62.420 72.222 0.00 0.00 0.00 3.77
31 32 4.419921 CCCACCTACGCCCCAACC 62.420 72.222 0.00 0.00 0.00 3.77
32 33 4.419921 CCACCTACGCCCCAACCC 62.420 72.222 0.00 0.00 0.00 4.11
33 34 4.419921 CACCTACGCCCCAACCCC 62.420 72.222 0.00 0.00 0.00 4.95
74 2426 1.079057 GTTTCTCCTCTCACCCGGC 60.079 63.158 0.00 0.00 0.00 6.13
138 2494 3.997064 CTCCCAAGAGTCCGCTGCG 62.997 68.421 16.34 16.34 35.21 5.18
186 2542 2.418746 CCCACCTTAATCACACTCTCCG 60.419 54.545 0.00 0.00 0.00 4.63
229 2585 4.329545 TCCAACCCTGCGGCAGAC 62.330 66.667 30.52 0.00 32.44 3.51
243 2599 1.599797 CAGACGGGGTTTGGTGGTC 60.600 63.158 0.00 0.00 0.00 4.02
325 2689 1.271434 GGTTTCCTGGTGAGTTCTCCC 60.271 57.143 0.00 0.00 0.00 4.30
345 2709 1.786928 CGCTGATTTTCGCCTCGTTTC 60.787 52.381 0.00 0.00 0.00 2.78
390 2756 4.735132 CGTGGACCATGGTCGCGT 62.735 66.667 33.60 11.17 45.41 6.01
406 2772 0.316196 GCGTGCATTGGACTATTCGC 60.316 55.000 6.74 0.74 36.06 4.70
415 2781 1.634753 GACTATTCGCGCGGTTTCC 59.365 57.895 31.69 11.42 0.00 3.13
452 2824 1.529152 TTAGCTCGGGAGTTGCGTCA 61.529 55.000 0.00 0.00 36.08 4.35
458 2830 1.004440 GGGAGTTGCGTCAGAGCTT 60.004 57.895 0.00 0.00 38.13 3.74
462 2834 1.458827 GAGTTGCGTCAGAGCTTTGAG 59.541 52.381 7.29 3.54 38.13 3.02
464 2836 1.230635 TTGCGTCAGAGCTTTGAGCC 61.231 55.000 18.98 10.21 43.77 4.70
465 2837 2.394563 GCGTCAGAGCTTTGAGCCC 61.395 63.158 7.29 0.00 43.77 5.19
466 2838 1.004560 CGTCAGAGCTTTGAGCCCA 60.005 57.895 7.29 0.00 43.77 5.36
469 2841 0.767375 TCAGAGCTTTGAGCCCAAGT 59.233 50.000 2.15 0.00 43.77 3.16
475 2847 1.138859 GCTTTGAGCCCAAGTGGTTTT 59.861 47.619 0.00 0.00 34.48 2.43
480 2852 0.395173 AGCCCAAGTGGTTTTCGTGT 60.395 50.000 0.00 0.00 36.04 4.49
496 2868 0.606096 GTGTGGGGTGTATTTTGGGC 59.394 55.000 0.00 0.00 0.00 5.36
497 2869 0.896019 TGTGGGGTGTATTTTGGGCG 60.896 55.000 0.00 0.00 0.00 6.13
498 2870 1.304547 TGGGGTGTATTTTGGGCGG 60.305 57.895 0.00 0.00 0.00 6.13
525 2897 2.188161 GTGGTTTTCCGTTGGGCGA 61.188 57.895 0.00 0.00 44.77 5.54
550 2922 3.186047 GTGGCGTGACGAATCGGG 61.186 66.667 10.10 0.00 0.00 5.14
623 2995 3.913573 CGAATTCGGCGGCGACAG 61.914 66.667 34.85 20.23 35.37 3.51
689 3061 1.135774 GCCGTTCGGAATCTGGTTTTC 60.136 52.381 15.69 0.00 0.00 2.29
694 3070 0.039035 CGGAATCTGGTTTTCCCCCA 59.961 55.000 0.00 0.00 39.63 4.96
695 3071 1.557099 GGAATCTGGTTTTCCCCCAC 58.443 55.000 0.00 0.00 37.29 4.61
696 3072 1.173913 GAATCTGGTTTTCCCCCACG 58.826 55.000 0.00 0.00 39.73 4.94
697 3073 0.774908 AATCTGGTTTTCCCCCACGA 59.225 50.000 0.00 0.00 39.73 4.35
698 3074 0.999712 ATCTGGTTTTCCCCCACGAT 59.000 50.000 0.00 0.00 39.73 3.73
699 3075 0.774908 TCTGGTTTTCCCCCACGATT 59.225 50.000 0.00 0.00 39.73 3.34
700 3076 1.173913 CTGGTTTTCCCCCACGATTC 58.826 55.000 0.00 0.00 39.73 2.52
701 3077 0.606944 TGGTTTTCCCCCACGATTCG 60.607 55.000 4.14 4.14 39.73 3.34
702 3078 1.310216 GGTTTTCCCCCACGATTCGG 61.310 60.000 11.29 0.00 0.00 4.30
768 3144 3.652000 GGTTTTGCGCGAACCGGA 61.652 61.111 23.98 2.76 37.41 5.14
769 3145 2.328639 GTTTTGCGCGAACCGGAA 59.671 55.556 12.10 0.00 45.73 4.30
894 3293 5.185442 GCCGTCTATATAAGTAAGCCCTTCT 59.815 44.000 0.00 0.00 0.00 2.85
913 3312 5.586243 CCTTCTTTAATGGCAGAAGAATCGA 59.414 40.000 17.97 0.00 46.23 3.59
970 3369 0.626382 GAGGGAAGGGGAAAAGGAGG 59.374 60.000 0.00 0.00 0.00 4.30
971 3370 0.851332 AGGGAAGGGGAAAAGGAGGG 60.851 60.000 0.00 0.00 0.00 4.30
972 3371 1.000486 GGAAGGGGAAAAGGAGGGC 60.000 63.158 0.00 0.00 0.00 5.19
974 3373 0.033991 GAAGGGGAAAAGGAGGGCTC 60.034 60.000 0.00 0.00 0.00 4.70
1216 3629 1.882623 GGGTGAGCTTTTCCTTGTCTG 59.117 52.381 0.00 0.00 0.00 3.51
1218 3631 2.550180 GGTGAGCTTTTCCTTGTCTGTC 59.450 50.000 0.00 0.00 0.00 3.51
1224 3637 3.669536 CTTTTCCTTGTCTGTCCTCTCC 58.330 50.000 0.00 0.00 0.00 3.71
1225 3638 2.704190 TTCCTTGTCTGTCCTCTCCT 57.296 50.000 0.00 0.00 0.00 3.69
1226 3639 2.704190 TCCTTGTCTGTCCTCTCCTT 57.296 50.000 0.00 0.00 0.00 3.36
1227 3640 2.977808 TCCTTGTCTGTCCTCTCCTTT 58.022 47.619 0.00 0.00 0.00 3.11
1228 3641 2.900546 TCCTTGTCTGTCCTCTCCTTTC 59.099 50.000 0.00 0.00 0.00 2.62
1229 3642 2.903135 CCTTGTCTGTCCTCTCCTTTCT 59.097 50.000 0.00 0.00 0.00 2.52
1251 3664 9.787532 TTTCTTTTGTGATAAATGCATAGCTAC 57.212 29.630 0.00 0.00 0.00 3.58
1294 3708 1.482593 ACCTCGAAGAATGGTAGCTGG 59.517 52.381 0.00 0.00 33.03 4.85
1295 3709 1.202580 CCTCGAAGAATGGTAGCTGGG 60.203 57.143 0.00 0.00 34.09 4.45
1296 3710 1.482593 CTCGAAGAATGGTAGCTGGGT 59.517 52.381 0.00 0.00 34.09 4.51
1330 3744 5.066764 CAGACTAGGAAGGTGTTAGCTACTC 59.933 48.000 0.00 0.00 0.00 2.59
1334 3748 3.707102 AGGAAGGTGTTAGCTACTCCATC 59.293 47.826 13.36 11.29 41.83 3.51
1335 3749 3.451178 GGAAGGTGTTAGCTACTCCATCA 59.549 47.826 15.18 0.72 41.83 3.07
1352 3766 8.143673 ACTCCATCATCATAGTGCTTACATAT 57.856 34.615 0.00 0.00 0.00 1.78
1472 3889 6.761714 AGTGGTAAGGATTGTATTTCGATGAC 59.238 38.462 0.00 0.00 0.00 3.06
1504 3921 6.555315 ACTTTCTTTGTTCAGCAGTTTAGTG 58.445 36.000 0.00 0.00 0.00 2.74
1624 4044 7.231317 TCCTGACAAATTTTAGTCATGAGCTTT 59.769 33.333 10.73 0.00 43.18 3.51
1642 4062 5.928153 AGCTTTTGAGTACGACAAATTAGC 58.072 37.500 22.49 22.49 39.39 3.09
1647 4067 4.548494 TGAGTACGACAAATTAGCGACAA 58.452 39.130 0.00 0.00 0.00 3.18
1648 4068 4.983538 TGAGTACGACAAATTAGCGACAAA 59.016 37.500 0.00 0.00 0.00 2.83
1649 4069 5.636121 TGAGTACGACAAATTAGCGACAAAT 59.364 36.000 0.00 0.00 0.00 2.32
1650 4070 6.146510 TGAGTACGACAAATTAGCGACAAATT 59.853 34.615 0.00 0.00 0.00 1.82
1651 4071 6.894828 AGTACGACAAATTAGCGACAAATTT 58.105 32.000 0.00 0.00 37.08 1.82
1652 4072 7.357303 AGTACGACAAATTAGCGACAAATTTT 58.643 30.769 0.00 0.00 35.00 1.82
1653 4073 8.497554 AGTACGACAAATTAGCGACAAATTTTA 58.502 29.630 0.00 0.00 35.00 1.52
1654 4074 7.775729 ACGACAAATTAGCGACAAATTTTAG 57.224 32.000 0.00 0.00 35.00 1.85
1655 4075 7.357303 ACGACAAATTAGCGACAAATTTTAGT 58.643 30.769 0.00 0.00 35.00 2.24
1656 4076 7.532884 ACGACAAATTAGCGACAAATTTTAGTC 59.467 33.333 0.00 0.00 35.00 2.59
1657 4077 7.532546 CGACAAATTAGCGACAAATTTTAGTCA 59.467 33.333 8.79 0.00 35.00 3.41
1658 4078 9.341899 GACAAATTAGCGACAAATTTTAGTCAT 57.658 29.630 8.79 0.98 35.00 3.06
1659 4079 9.128107 ACAAATTAGCGACAAATTTTAGTCATG 57.872 29.630 8.79 0.00 35.00 3.07
1660 4080 9.340695 CAAATTAGCGACAAATTTTAGTCATGA 57.659 29.630 8.79 0.00 35.00 3.07
1661 4081 9.559958 AAATTAGCGACAAATTTTAGTCATGAG 57.440 29.630 0.00 0.00 33.78 2.90
1662 4082 4.974591 AGCGACAAATTTTAGTCATGAGC 58.025 39.130 0.00 4.59 34.48 4.26
1663 4083 4.697352 AGCGACAAATTTTAGTCATGAGCT 59.303 37.500 0.00 0.00 34.48 4.09
1664 4084 5.182001 AGCGACAAATTTTAGTCATGAGCTT 59.818 36.000 0.00 0.00 34.48 3.74
1665 4085 5.509622 GCGACAAATTTTAGTCATGAGCTTC 59.490 40.000 0.00 0.00 34.48 3.86
1666 4086 6.024049 CGACAAATTTTAGTCATGAGCTTCC 58.976 40.000 0.00 0.00 34.48 3.46
1667 4087 6.348458 CGACAAATTTTAGTCATGAGCTTCCA 60.348 38.462 0.00 0.00 34.48 3.53
1668 4088 7.288810 ACAAATTTTAGTCATGAGCTTCCAA 57.711 32.000 0.00 0.00 0.00 3.53
1669 4089 7.373493 ACAAATTTTAGTCATGAGCTTCCAAG 58.627 34.615 0.00 0.00 0.00 3.61
1670 4090 7.014615 ACAAATTTTAGTCATGAGCTTCCAAGT 59.985 33.333 0.00 0.00 0.00 3.16
1671 4091 8.514594 CAAATTTTAGTCATGAGCTTCCAAGTA 58.485 33.333 0.00 0.00 0.00 2.24
1672 4092 7.617041 ATTTTAGTCATGAGCTTCCAAGTAC 57.383 36.000 0.00 0.00 0.00 2.73
1673 4093 3.238108 AGTCATGAGCTTCCAAGTACG 57.762 47.619 0.00 0.00 0.00 3.67
1674 4094 2.826128 AGTCATGAGCTTCCAAGTACGA 59.174 45.455 0.00 0.00 0.00 3.43
1675 4095 2.924290 GTCATGAGCTTCCAAGTACGAC 59.076 50.000 0.00 0.00 0.00 4.34
1676 4096 2.560981 TCATGAGCTTCCAAGTACGACA 59.439 45.455 0.00 0.00 0.00 4.35
1677 4097 3.006430 TCATGAGCTTCCAAGTACGACAA 59.994 43.478 0.00 0.00 0.00 3.18
1678 4098 3.462483 TGAGCTTCCAAGTACGACAAA 57.538 42.857 0.00 0.00 0.00 2.83
1679 4099 4.002906 TGAGCTTCCAAGTACGACAAAT 57.997 40.909 0.00 0.00 0.00 2.32
1680 4100 4.385825 TGAGCTTCCAAGTACGACAAATT 58.614 39.130 0.00 0.00 0.00 1.82
1681 4101 5.543714 TGAGCTTCCAAGTACGACAAATTA 58.456 37.500 0.00 0.00 0.00 1.40
1682 4102 5.637810 TGAGCTTCCAAGTACGACAAATTAG 59.362 40.000 0.00 0.00 0.00 1.73
1683 4103 4.392138 AGCTTCCAAGTACGACAAATTAGC 59.608 41.667 0.00 0.00 0.00 3.09
1684 4104 4.724036 GCTTCCAAGTACGACAAATTAGCG 60.724 45.833 0.00 0.00 0.00 4.26
1685 4105 4.177165 TCCAAGTACGACAAATTAGCGA 57.823 40.909 0.00 0.00 0.00 4.93
1686 4106 3.922240 TCCAAGTACGACAAATTAGCGAC 59.078 43.478 0.00 0.00 0.00 5.19
1687 4107 3.676172 CCAAGTACGACAAATTAGCGACA 59.324 43.478 0.00 0.00 0.00 4.35
1688 4108 4.150980 CCAAGTACGACAAATTAGCGACAA 59.849 41.667 0.00 0.00 0.00 3.18
1689 4109 5.333492 CCAAGTACGACAAATTAGCGACAAA 60.333 40.000 0.00 0.00 0.00 2.83
1690 4110 6.304126 CAAGTACGACAAATTAGCGACAAAT 58.696 36.000 0.00 0.00 0.00 2.32
1691 4111 6.476243 AGTACGACAAATTAGCGACAAATT 57.524 33.333 0.00 0.00 0.00 1.82
1692 4112 6.894828 AGTACGACAAATTAGCGACAAATTT 58.105 32.000 0.00 0.00 37.08 1.82
1693 4113 7.357303 AGTACGACAAATTAGCGACAAATTTT 58.643 30.769 0.00 0.00 35.00 1.82
1694 4114 8.497554 AGTACGACAAATTAGCGACAAATTTTA 58.502 29.630 0.00 0.00 35.00 1.52
1695 4115 7.775729 ACGACAAATTAGCGACAAATTTTAG 57.224 32.000 0.00 0.00 35.00 1.85
1696 4116 7.357303 ACGACAAATTAGCGACAAATTTTAGT 58.643 30.769 0.00 0.00 35.00 2.24
1697 4117 7.532884 ACGACAAATTAGCGACAAATTTTAGTC 59.467 33.333 0.00 0.00 35.00 2.59
1698 4118 7.532546 CGACAAATTAGCGACAAATTTTAGTCA 59.467 33.333 8.79 0.00 35.00 3.41
1699 4119 9.341899 GACAAATTAGCGACAAATTTTAGTCAT 57.658 29.630 8.79 0.98 35.00 3.06
1700 4120 9.128107 ACAAATTAGCGACAAATTTTAGTCATG 57.872 29.630 8.79 0.00 35.00 3.07
1701 4121 9.340695 CAAATTAGCGACAAATTTTAGTCATGA 57.659 29.630 8.79 0.00 35.00 3.07
1702 4122 9.559958 AAATTAGCGACAAATTTTAGTCATGAG 57.440 29.630 0.00 0.00 33.78 2.90
1703 4123 4.974591 AGCGACAAATTTTAGTCATGAGC 58.025 39.130 0.00 4.59 34.48 4.26
1704 4124 4.697352 AGCGACAAATTTTAGTCATGAGCT 59.303 37.500 0.00 0.00 34.48 4.09
1705 4125 5.182001 AGCGACAAATTTTAGTCATGAGCTT 59.818 36.000 0.00 0.00 34.48 3.74
1706 4126 5.509622 GCGACAAATTTTAGTCATGAGCTTC 59.490 40.000 0.00 0.00 34.48 3.86
1707 4127 6.024049 CGACAAATTTTAGTCATGAGCTTCC 58.976 40.000 0.00 0.00 34.48 3.46
1708 4128 5.942872 ACAAATTTTAGTCATGAGCTTCCG 58.057 37.500 0.00 0.00 0.00 4.30
1709 4129 5.705441 ACAAATTTTAGTCATGAGCTTCCGA 59.295 36.000 0.00 0.00 0.00 4.55
1710 4130 6.128172 ACAAATTTTAGTCATGAGCTTCCGAG 60.128 38.462 0.00 0.00 0.00 4.63
1711 4131 4.537135 TTTTAGTCATGAGCTTCCGAGT 57.463 40.909 0.00 0.00 0.00 4.18
1712 4132 5.654603 TTTTAGTCATGAGCTTCCGAGTA 57.345 39.130 0.00 0.00 0.00 2.59
1713 4133 4.634184 TTAGTCATGAGCTTCCGAGTAC 57.366 45.455 0.00 0.00 0.00 2.73
1714 4134 1.402259 AGTCATGAGCTTCCGAGTACG 59.598 52.381 0.00 0.00 39.43 3.67
1715 4135 1.400846 GTCATGAGCTTCCGAGTACGA 59.599 52.381 0.00 0.00 42.66 3.43
1716 4136 1.400846 TCATGAGCTTCCGAGTACGAC 59.599 52.381 0.00 0.00 42.66 4.34
1717 4137 1.132453 CATGAGCTTCCGAGTACGACA 59.868 52.381 0.00 0.00 42.66 4.35
1734 4154 6.874134 AGTACGACAAATTTTAGTCATGAGCT 59.126 34.615 0.00 0.00 34.48 4.09
1758 4178 3.165890 CGAGTACGACAAATTAGCGACA 58.834 45.455 0.00 0.00 42.66 4.35
1759 4179 3.605056 CGAGTACGACAAATTAGCGACAA 59.395 43.478 0.00 0.00 42.66 3.18
1760 4180 4.088923 CGAGTACGACAAATTAGCGACAAA 59.911 41.667 0.00 0.00 42.66 2.83
1761 4181 5.220154 CGAGTACGACAAATTAGCGACAAAT 60.220 40.000 0.00 0.00 42.66 2.32
1762 4182 6.476243 AGTACGACAAATTAGCGACAAATT 57.524 33.333 0.00 0.00 0.00 1.82
1763 4183 6.894828 AGTACGACAAATTAGCGACAAATTT 58.105 32.000 0.00 0.00 37.08 1.82
1764 4184 7.357303 AGTACGACAAATTAGCGACAAATTTT 58.643 30.769 0.00 0.00 35.00 1.82
1765 4185 8.497554 AGTACGACAAATTAGCGACAAATTTTA 58.502 29.630 0.00 0.00 35.00 1.52
1766 4186 7.775729 ACGACAAATTAGCGACAAATTTTAG 57.224 32.000 0.00 0.00 35.00 1.85
1767 4187 7.357303 ACGACAAATTAGCGACAAATTTTAGT 58.643 30.769 0.00 0.00 35.00 2.24
1768 4188 7.532884 ACGACAAATTAGCGACAAATTTTAGTC 59.467 33.333 0.00 0.00 35.00 2.59
1769 4189 7.532546 CGACAAATTAGCGACAAATTTTAGTCA 59.467 33.333 8.79 0.00 35.00 3.41
1770 4190 9.341899 GACAAATTAGCGACAAATTTTAGTCAT 57.658 29.630 8.79 0.98 35.00 3.06
1771 4191 9.128107 ACAAATTAGCGACAAATTTTAGTCATG 57.872 29.630 8.79 0.00 35.00 3.07
1772 4192 9.340695 CAAATTAGCGACAAATTTTAGTCATGA 57.659 29.630 8.79 0.00 35.00 3.07
1773 4193 9.559958 AAATTAGCGACAAATTTTAGTCATGAG 57.440 29.630 0.00 0.00 33.78 2.90
1774 4194 4.974591 AGCGACAAATTTTAGTCATGAGC 58.025 39.130 0.00 4.59 34.48 4.26
1775 4195 4.697352 AGCGACAAATTTTAGTCATGAGCT 59.303 37.500 0.00 0.00 34.48 4.09
1776 4196 5.182001 AGCGACAAATTTTAGTCATGAGCTT 59.818 36.000 0.00 0.00 34.48 3.74
1777 4197 5.509622 GCGACAAATTTTAGTCATGAGCTTC 59.490 40.000 0.00 0.00 34.48 3.86
1778 4198 6.024049 CGACAAATTTTAGTCATGAGCTTCC 58.976 40.000 0.00 0.00 34.48 3.46
1779 4199 5.942872 ACAAATTTTAGTCATGAGCTTCCG 58.057 37.500 0.00 0.00 0.00 4.30
1780 4200 5.705441 ACAAATTTTAGTCATGAGCTTCCGA 59.295 36.000 0.00 0.00 0.00 4.55
1781 4201 6.128172 ACAAATTTTAGTCATGAGCTTCCGAG 60.128 38.462 0.00 0.00 0.00 4.63
1782 4202 4.537135 TTTTAGTCATGAGCTTCCGAGT 57.463 40.909 0.00 0.00 0.00 4.18
1783 4203 5.654603 TTTTAGTCATGAGCTTCCGAGTA 57.345 39.130 0.00 0.00 0.00 2.59
1784 4204 4.634184 TTAGTCATGAGCTTCCGAGTAC 57.366 45.455 0.00 0.00 0.00 2.73
1785 4205 1.402259 AGTCATGAGCTTCCGAGTACG 59.598 52.381 0.00 0.00 39.43 3.67
1786 4206 1.400846 GTCATGAGCTTCCGAGTACGA 59.599 52.381 0.00 0.00 42.66 3.43
1787 4207 1.400846 TCATGAGCTTCCGAGTACGAC 59.599 52.381 0.00 0.00 42.66 4.34
1788 4208 1.132453 CATGAGCTTCCGAGTACGACA 59.868 52.381 0.00 0.00 42.66 4.35
1789 4209 1.241165 TGAGCTTCCGAGTACGACAA 58.759 50.000 0.00 0.00 42.66 3.18
1790 4210 1.610038 TGAGCTTCCGAGTACGACAAA 59.390 47.619 0.00 0.00 42.66 2.83
1791 4211 1.984297 GAGCTTCCGAGTACGACAAAC 59.016 52.381 0.00 0.00 42.66 2.93
1792 4212 1.612463 AGCTTCCGAGTACGACAAACT 59.388 47.619 0.00 0.00 42.66 2.66
1793 4213 2.816087 AGCTTCCGAGTACGACAAACTA 59.184 45.455 0.00 0.00 42.66 2.24
1794 4214 3.119919 AGCTTCCGAGTACGACAAACTAG 60.120 47.826 0.00 0.00 42.66 2.57
1795 4215 2.907910 TCCGAGTACGACAAACTAGC 57.092 50.000 0.00 0.00 42.66 3.42
1796 4216 1.129251 TCCGAGTACGACAAACTAGCG 59.871 52.381 0.00 0.00 42.66 4.26
1797 4217 1.129251 CCGAGTACGACAAACTAGCGA 59.871 52.381 0.00 0.00 42.66 4.93
1798 4218 2.164427 CGAGTACGACAAACTAGCGAC 58.836 52.381 0.00 0.00 42.66 5.19
1799 4219 2.411935 CGAGTACGACAAACTAGCGACA 60.412 50.000 0.00 0.00 42.66 4.35
1834 4254 4.082625 TGAGCTTCCGAGTACGACAAATTA 60.083 41.667 0.00 0.00 42.66 1.40
1835 4255 4.421948 AGCTTCCGAGTACGACAAATTAG 58.578 43.478 0.00 0.00 42.66 1.73
1836 4256 3.000022 GCTTCCGAGTACGACAAATTAGC 60.000 47.826 0.00 0.00 42.66 3.09
1837 4257 2.789208 TCCGAGTACGACAAATTAGCG 58.211 47.619 0.00 0.00 42.66 4.26
1838 4258 2.419673 TCCGAGTACGACAAATTAGCGA 59.580 45.455 0.00 0.00 42.66 4.93
1839 4259 2.529090 CCGAGTACGACAAATTAGCGAC 59.471 50.000 0.00 0.00 42.66 5.19
1840 4260 3.165890 CGAGTACGACAAATTAGCGACA 58.834 45.455 0.00 0.00 42.66 4.35
1841 4261 3.605056 CGAGTACGACAAATTAGCGACAA 59.395 43.478 0.00 0.00 42.66 3.18
1842 4262 4.088923 CGAGTACGACAAATTAGCGACAAA 59.911 41.667 0.00 0.00 42.66 2.83
1843 4263 5.220154 CGAGTACGACAAATTAGCGACAAAT 60.220 40.000 0.00 0.00 42.66 2.32
1844 4264 6.476243 AGTACGACAAATTAGCGACAAATT 57.524 33.333 0.00 0.00 0.00 1.82
1943 4363 1.779569 TCGAAGAGTGAAGGAAACGC 58.220 50.000 0.00 0.00 0.00 4.84
1966 4386 3.917300 TGTTGGTGGGTTAATTGGTTCT 58.083 40.909 0.00 0.00 0.00 3.01
1973 4393 5.414765 GGTGGGTTAATTGGTTCTAGTTGAG 59.585 44.000 0.00 0.00 0.00 3.02
2099 4519 7.761409 AGAAACTATTTCAGCGCATTCATTTA 58.239 30.769 11.47 0.00 42.10 1.40
2147 4567 7.905604 ATTCATCTCGTTAGAATTGTGTGAA 57.094 32.000 0.00 0.00 34.73 3.18
2224 4644 1.276421 AGTAACTCTGCCGTGATTGCT 59.724 47.619 0.00 0.00 0.00 3.91
2455 4877 7.700322 TTTGTGATTCTTCTATCTGATACGC 57.300 36.000 0.00 0.00 0.00 4.42
2465 4887 1.389555 TCTGATACGCATCTGACCGT 58.610 50.000 9.61 9.61 41.11 4.83
2522 4944 1.467734 CTCTGGTTCTCATTGCAGCAC 59.532 52.381 0.00 0.00 0.00 4.40
2572 4994 2.555325 TGACTCTGAAAAATGCAGCCAG 59.445 45.455 0.00 0.00 33.45 4.85
2596 5018 5.062308 GGATGGAAACGCGTATATCTCATTC 59.938 44.000 14.46 10.01 0.00 2.67
2617 5039 2.426738 CGGTCAATGGGTATGTGCATTT 59.573 45.455 0.00 0.00 0.00 2.32
2618 5040 3.119173 CGGTCAATGGGTATGTGCATTTT 60.119 43.478 0.00 0.00 0.00 1.82
2619 5041 4.432712 GGTCAATGGGTATGTGCATTTTC 58.567 43.478 0.00 0.00 0.00 2.29
2632 5056 2.295909 TGCATTTTCTTTTCGGGAGGTG 59.704 45.455 0.00 0.00 0.00 4.00
2633 5057 2.926586 GCATTTTCTTTTCGGGAGGTGC 60.927 50.000 0.00 0.00 0.00 5.01
2754 5179 7.028926 AGATCATGTGCTGAATGAATTCTTC 57.971 36.000 7.05 8.52 37.58 2.87
2755 5180 6.602009 AGATCATGTGCTGAATGAATTCTTCA 59.398 34.615 7.05 12.23 38.83 3.02
2756 5181 5.946298 TCATGTGCTGAATGAATTCTTCAC 58.054 37.500 7.05 15.16 43.48 3.18
2758 5183 6.208007 TCATGTGCTGAATGAATTCTTCACTT 59.792 34.615 19.19 14.18 43.48 3.16
2759 5184 5.765176 TGTGCTGAATGAATTCTTCACTTG 58.235 37.500 19.19 4.59 43.48 3.16
2760 5185 5.532032 TGTGCTGAATGAATTCTTCACTTGA 59.468 36.000 19.19 6.38 43.48 3.02
2761 5186 6.208007 TGTGCTGAATGAATTCTTCACTTGAT 59.792 34.615 19.19 0.00 43.48 2.57
2819 5244 1.366319 AGATGCTTTCTCCACCACCT 58.634 50.000 0.00 0.00 0.00 4.00
2973 5398 1.354368 TCGAGGGGAATCAAAAAGGCT 59.646 47.619 0.00 0.00 0.00 4.58
3025 5452 9.865321 AAAATACTAGCAGTGATTCGTAGTTTA 57.135 29.630 11.58 0.00 0.00 2.01
3036 5463 8.932791 AGTGATTCGTAGTTTAATACACTTTGG 58.067 33.333 0.00 0.00 33.29 3.28
3248 5675 7.902920 ATATCTGTATTTTGTGCCTTGGAAT 57.097 32.000 0.00 0.00 0.00 3.01
3398 5825 2.019984 GCATCCTGCTTTCGGATTTCT 58.980 47.619 0.00 0.00 39.20 2.52
3413 5840 9.549509 TTTCGGATTTCTTTTCAAATATACACG 57.450 29.630 0.00 0.00 0.00 4.49
3610 6053 0.451783 GACATCACCCGAACCATTGC 59.548 55.000 0.00 0.00 0.00 3.56
3631 6075 2.804527 CCATTGTATGTGAGGAGATGCG 59.195 50.000 0.00 0.00 0.00 4.73
3658 6102 3.706594 TCCAGATCTTAACACTAGCCCTG 59.293 47.826 0.00 0.00 0.00 4.45
3768 6213 2.130821 TTGCTGGGGTTGGCATCGTA 62.131 55.000 0.00 0.00 38.30 3.43
3886 6331 5.729229 TCAGGTATGAGAAAATAAGGGACCA 59.271 40.000 0.00 0.00 0.00 4.02
3905 6350 5.163343 GGACCACTGCTTATCACTTACCATA 60.163 44.000 0.00 0.00 0.00 2.74
3974 6419 0.103937 AGGCTCGCTGCTTATCACTC 59.896 55.000 0.00 0.00 42.39 3.51
4072 6600 0.250467 GGCAGTGTGTGTGAGGTCAT 60.250 55.000 0.00 0.00 0.00 3.06
4079 6607 4.040339 AGTGTGTGTGAGGTCATCATGTTA 59.960 41.667 0.00 0.00 40.92 2.41
4271 6800 2.882761 GGCGGGGTGGATTATTTTCTAC 59.117 50.000 0.00 0.00 0.00 2.59
4278 6807 5.878669 GGGTGGATTATTTTCTACTTGACGT 59.121 40.000 0.00 0.00 0.00 4.34
4310 6839 1.128200 TATGCCGCTCCCTTGTATGT 58.872 50.000 0.00 0.00 0.00 2.29
4313 6842 0.750850 GCCGCTCCCTTGTATGTCTA 59.249 55.000 0.00 0.00 0.00 2.59
4314 6843 1.538419 GCCGCTCCCTTGTATGTCTAC 60.538 57.143 0.00 0.00 0.00 2.59
4398 6931 7.118825 TGCTCAAACTACTCTTGATTTGATCTG 59.881 37.037 0.00 0.00 39.60 2.90
4494 7030 3.343941 TGAACTGTACAATAGGCCACC 57.656 47.619 5.01 0.00 0.00 4.61
4536 7072 3.945921 CTCTGGAGGTACGAGTTGTATCA 59.054 47.826 3.58 0.00 36.57 2.15
4600 7136 5.997129 CCTTTGTCATGTTAATTTTGGCCTT 59.003 36.000 3.32 0.00 0.00 4.35
4603 7139 5.923204 TGTCATGTTAATTTTGGCCTTGTT 58.077 33.333 3.32 0.00 0.00 2.83
4604 7140 5.988561 TGTCATGTTAATTTTGGCCTTGTTC 59.011 36.000 3.32 0.00 0.00 3.18
4608 7144 4.898861 TGTTAATTTTGGCCTTGTTCCTCT 59.101 37.500 3.32 0.00 0.00 3.69
4612 7148 2.436109 GGCCTTGTTCCTCTGCCA 59.564 61.111 0.00 0.00 41.76 4.92
4614 7150 1.073897 GCCTTGTTCCTCTGCCACT 59.926 57.895 0.00 0.00 0.00 4.00
4615 7151 0.538287 GCCTTGTTCCTCTGCCACTT 60.538 55.000 0.00 0.00 0.00 3.16
4617 7153 1.477558 CCTTGTTCCTCTGCCACTTGT 60.478 52.381 0.00 0.00 0.00 3.16
4618 7154 1.876156 CTTGTTCCTCTGCCACTTGTC 59.124 52.381 0.00 0.00 0.00 3.18
4619 7155 0.836606 TGTTCCTCTGCCACTTGTCA 59.163 50.000 0.00 0.00 0.00 3.58
4620 7156 1.421268 TGTTCCTCTGCCACTTGTCAT 59.579 47.619 0.00 0.00 0.00 3.06
4672 7209 3.270877 GCCTGCCCATATTATTAGGTCG 58.729 50.000 0.00 0.00 0.00 4.79
4721 7258 6.618287 TTTCAGATATATTTTGGCACTCCG 57.382 37.500 0.00 0.00 34.14 4.63
4732 7283 1.517257 GCACTCCGTGATCCGTCTG 60.517 63.158 0.00 0.00 35.23 3.51
4735 7286 0.243907 ACTCCGTGATCCGTCTGTTG 59.756 55.000 0.00 0.00 33.66 3.33
4743 7294 2.158740 TGATCCGTCTGTTGGGTTGAAA 60.159 45.455 0.00 0.00 0.00 2.69
4760 7317 7.040755 TGGGTTGAAAGTGTATTCTGTATGTTG 60.041 37.037 0.00 0.00 0.00 3.33
4761 7318 7.040686 GGGTTGAAAGTGTATTCTGTATGTTGT 60.041 37.037 0.00 0.00 0.00 3.32
4762 7319 7.803189 GGTTGAAAGTGTATTCTGTATGTTGTG 59.197 37.037 0.00 0.00 0.00 3.33
4763 7320 8.342634 GTTGAAAGTGTATTCTGTATGTTGTGT 58.657 33.333 0.00 0.00 0.00 3.72
4764 7321 8.445275 TGAAAGTGTATTCTGTATGTTGTGTT 57.555 30.769 0.00 0.00 0.00 3.32
4765 7322 8.341903 TGAAAGTGTATTCTGTATGTTGTGTTG 58.658 33.333 0.00 0.00 0.00 3.33
4766 7323 7.801716 AAGTGTATTCTGTATGTTGTGTTGT 57.198 32.000 0.00 0.00 0.00 3.32
4767 7324 7.189693 AGTGTATTCTGTATGTTGTGTTGTG 57.810 36.000 0.00 0.00 0.00 3.33
4768 7325 5.851177 GTGTATTCTGTATGTTGTGTTGTGC 59.149 40.000 0.00 0.00 0.00 4.57
4769 7326 3.980646 TTCTGTATGTTGTGTTGTGCC 57.019 42.857 0.00 0.00 0.00 5.01
4770 7327 3.207265 TCTGTATGTTGTGTTGTGCCT 57.793 42.857 0.00 0.00 0.00 4.75
4771 7328 3.550820 TCTGTATGTTGTGTTGTGCCTT 58.449 40.909 0.00 0.00 0.00 4.35
4775 7332 1.719600 TGTTGTGTTGTGCCTTTTGC 58.280 45.000 0.00 0.00 41.77 3.68
4787 7344 0.318107 CCTTTTGCGCTGTCCTTGTG 60.318 55.000 9.73 0.00 0.00 3.33
4853 7419 2.491152 GCGCAACCCATGATGGTG 59.509 61.111 11.09 4.17 39.05 4.17
5002 7581 3.198409 TGATCGCTCCATGTGCTTATT 57.802 42.857 6.41 0.00 0.00 1.40
5003 7582 4.335400 TGATCGCTCCATGTGCTTATTA 57.665 40.909 6.41 0.00 0.00 0.98
5004 7583 4.898320 TGATCGCTCCATGTGCTTATTAT 58.102 39.130 6.41 0.00 0.00 1.28
5005 7584 4.692155 TGATCGCTCCATGTGCTTATTATG 59.308 41.667 6.41 0.00 0.00 1.90
5021 7600 7.170965 GCTTATTATGGAGATGGATCTGGAAA 58.829 38.462 0.00 0.00 37.25 3.13
5027 7606 3.282885 GAGATGGATCTGGAAAACCACC 58.717 50.000 0.00 0.00 37.25 4.61
5046 7625 1.069568 CCGATCTGAATCTCGTCTCCG 60.070 57.143 0.00 0.00 33.11 4.63
5054 7633 1.384525 ATCTCGTCTCCGGTCAGAAG 58.615 55.000 0.00 0.00 33.95 2.85
5056 7635 0.730265 CTCGTCTCCGGTCAGAAGAG 59.270 60.000 17.50 17.50 40.95 2.85
5074 7653 2.033550 AGAGAACTGCGTATCCGATGTC 59.966 50.000 0.00 0.00 35.63 3.06
5079 7658 0.666374 TGCGTATCCGATGTCGATGT 59.334 50.000 3.62 0.00 43.02 3.06
5119 7908 2.248431 GCTGACACGTTCGTTGCC 59.752 61.111 0.00 0.00 0.00 4.52
5120 7909 2.244651 GCTGACACGTTCGTTGCCT 61.245 57.895 0.00 0.00 0.00 4.75
5121 7910 1.853319 CTGACACGTTCGTTGCCTC 59.147 57.895 0.00 0.00 0.00 4.70
5122 7911 1.876453 CTGACACGTTCGTTGCCTCG 61.876 60.000 0.00 0.00 0.00 4.63
5123 7912 1.947642 GACACGTTCGTTGCCTCGT 60.948 57.895 0.00 0.00 36.99 4.18
5124 7913 2.544359 CACGTTCGTTGCCTCGTG 59.456 61.111 0.00 0.00 45.10 4.35
5150 7939 4.054671 GCGTCGAGTACTGGTACTATACT 58.945 47.826 12.61 0.00 45.63 2.12
5185 7974 1.672881 GAATGTGCCGGGAAGATTCTG 59.327 52.381 15.92 0.00 0.00 3.02
5194 7983 3.323243 CGGGAAGATTCTGTAACACGTT 58.677 45.455 0.00 0.00 0.00 3.99
5221 8010 0.679505 ACACGCAAGCTAGAGTTGGA 59.320 50.000 0.00 0.00 45.62 3.53
5266 8055 2.707849 CCAAGCTGGGCAGTGCATC 61.708 63.158 18.61 9.09 32.67 3.91
5287 8076 3.179265 GACGACGCATGGGACGTG 61.179 66.667 35.64 16.40 45.24 4.49
5288 8077 3.909258 GACGACGCATGGGACGTGT 62.909 63.158 35.64 18.57 45.24 4.49
5289 8078 2.179767 CGACGCATGGGACGTGTA 59.820 61.111 22.47 0.00 45.24 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.419921 GTTGGGGCGTAGGTGGGG 62.420 72.222 0.00 0.00 0.00 4.96
14 15 4.419921 GGTTGGGGCGTAGGTGGG 62.420 72.222 0.00 0.00 0.00 4.61
15 16 4.419921 GGGTTGGGGCGTAGGTGG 62.420 72.222 0.00 0.00 0.00 4.61
16 17 4.419921 GGGGTTGGGGCGTAGGTG 62.420 72.222 0.00 0.00 0.00 4.00
46 47 0.179194 GAGGAGAAACGACGAGACGG 60.179 60.000 0.00 0.00 37.61 4.79
47 48 0.797542 AGAGGAGAAACGACGAGACG 59.202 55.000 0.00 0.00 39.31 4.18
74 2426 2.881352 GCCGCGGTCTCTCTTTCG 60.881 66.667 28.70 0.00 0.00 3.46
138 2494 2.485122 CGGGGCGCTGTTTGATTC 59.515 61.111 7.64 0.00 0.00 2.52
186 2542 0.106217 TTAATAAGGCAGGCAGGGGC 60.106 55.000 0.00 0.00 40.13 5.80
229 2585 4.939368 TGCGACCACCAAACCCCG 62.939 66.667 0.00 0.00 0.00 5.73
293 2657 2.513897 GAAACCGGGGAGGCGATG 60.514 66.667 6.32 0.00 46.52 3.84
303 2667 0.396811 AGAACTCACCAGGAAACCGG 59.603 55.000 0.00 0.00 0.00 5.28
325 2689 0.165944 AAACGAGGCGAAAATCAGCG 59.834 50.000 0.00 0.00 0.00 5.18
345 2709 3.197790 CCCGCAAGCAGATGGTCG 61.198 66.667 0.00 0.00 0.00 4.79
389 2755 0.316196 GCGCGAATAGTCCAATGCAC 60.316 55.000 12.10 0.00 0.00 4.57
390 2756 1.761244 CGCGCGAATAGTCCAATGCA 61.761 55.000 28.94 0.00 0.00 3.96
406 2772 1.577328 AATCAGCACTGGAAACCGCG 61.577 55.000 0.00 0.00 0.00 6.46
415 2781 4.159135 AGCTAAAATCCCAAATCAGCACTG 59.841 41.667 0.00 0.00 0.00 3.66
452 2824 0.251077 CCACTTGGGCTCAAAGCTCT 60.251 55.000 0.00 0.00 43.70 4.09
458 2830 1.028905 CGAAAACCACTTGGGCTCAA 58.971 50.000 0.00 0.00 42.05 3.02
462 2834 0.248866 CACACGAAAACCACTTGGGC 60.249 55.000 0.00 0.00 42.05 5.36
464 2836 0.383949 CCCACACGAAAACCACTTGG 59.616 55.000 0.00 0.00 42.17 3.61
465 2837 0.383949 CCCCACACGAAAACCACTTG 59.616 55.000 0.00 0.00 0.00 3.16
466 2838 0.033894 ACCCCACACGAAAACCACTT 60.034 50.000 0.00 0.00 0.00 3.16
469 2841 0.545171 TACACCCCACACGAAAACCA 59.455 50.000 0.00 0.00 0.00 3.67
475 2847 1.545875 CCCAAAATACACCCCACACGA 60.546 52.381 0.00 0.00 0.00 4.35
480 2852 1.304547 CCGCCCAAAATACACCCCA 60.305 57.895 0.00 0.00 0.00 4.96
689 3061 2.306255 ATCGAACCGAATCGTGGGGG 62.306 60.000 0.82 0.00 43.19 5.40
696 3072 2.117910 GACCTCGAATCGAACCGAATC 58.882 52.381 6.84 9.69 39.99 2.52
697 3073 1.202382 GGACCTCGAATCGAACCGAAT 60.202 52.381 6.84 5.34 39.99 3.34
698 3074 0.171903 GGACCTCGAATCGAACCGAA 59.828 55.000 6.84 0.00 39.99 4.30
699 3075 0.679002 AGGACCTCGAATCGAACCGA 60.679 55.000 6.84 11.17 41.13 4.69
700 3076 0.172803 AAGGACCTCGAATCGAACCG 59.827 55.000 6.84 0.00 34.74 4.44
701 3077 1.471153 GGAAGGACCTCGAATCGAACC 60.471 57.143 6.84 10.47 34.74 3.62
702 3078 1.471153 GGGAAGGACCTCGAATCGAAC 60.471 57.143 6.84 1.41 38.98 3.95
768 3144 3.494254 TGCCGGACCAACCACCTT 61.494 61.111 5.05 0.00 38.90 3.50
769 3145 4.265056 GTGCCGGACCAACCACCT 62.265 66.667 5.05 0.00 38.90 4.00
888 3287 5.220931 CGATTCTTCTGCCATTAAAGAAGGG 60.221 44.000 12.53 0.00 46.21 3.95
894 3293 4.635765 CCACTCGATTCTTCTGCCATTAAA 59.364 41.667 0.00 0.00 0.00 1.52
913 3312 2.203640 TCACGAGCAGGACCCACT 60.204 61.111 0.00 0.00 0.00 4.00
932 3331 3.052082 CAGTTGCAGCCCTCACGG 61.052 66.667 0.00 0.00 0.00 4.94
933 3332 3.730761 GCAGTTGCAGCCCTCACG 61.731 66.667 0.00 0.00 41.59 4.35
934 3333 3.730761 CGCAGTTGCAGCCCTCAC 61.731 66.667 4.84 0.00 42.21 3.51
935 3334 3.889134 CTCGCAGTTGCAGCCCTCA 62.889 63.158 4.84 0.00 42.21 3.86
936 3335 3.123620 CTCGCAGTTGCAGCCCTC 61.124 66.667 4.84 0.00 42.21 4.30
937 3336 4.711949 CCTCGCAGTTGCAGCCCT 62.712 66.667 4.84 0.00 42.21 5.19
939 3338 4.704833 TCCCTCGCAGTTGCAGCC 62.705 66.667 4.84 0.00 42.21 4.85
940 3339 2.669569 TTCCCTCGCAGTTGCAGC 60.670 61.111 4.84 0.00 42.21 5.25
941 3340 2.037136 CCTTCCCTCGCAGTTGCAG 61.037 63.158 4.84 1.44 42.21 4.41
942 3341 2.032528 CCTTCCCTCGCAGTTGCA 59.967 61.111 4.84 0.00 42.21 4.08
943 3342 2.747855 CCCTTCCCTCGCAGTTGC 60.748 66.667 0.00 0.00 37.78 4.17
944 3343 2.045926 CCCCTTCCCTCGCAGTTG 60.046 66.667 0.00 0.00 0.00 3.16
945 3344 1.423794 TTTCCCCTTCCCTCGCAGTT 61.424 55.000 0.00 0.00 0.00 3.16
946 3345 1.423794 TTTTCCCCTTCCCTCGCAGT 61.424 55.000 0.00 0.00 0.00 4.40
970 3369 0.107945 AGATTGACTTGAGCCGAGCC 60.108 55.000 0.00 0.00 0.00 4.70
971 3370 1.005340 CAGATTGACTTGAGCCGAGC 58.995 55.000 0.00 0.00 0.00 5.03
972 3371 1.649664 CCAGATTGACTTGAGCCGAG 58.350 55.000 0.00 0.00 0.00 4.63
974 3373 1.372087 GCCCAGATTGACTTGAGCCG 61.372 60.000 0.00 0.00 0.00 5.52
1216 3629 7.745620 TTTATCACAAAAGAAAGGAGAGGAC 57.254 36.000 0.00 0.00 0.00 3.85
1218 3631 7.031975 GCATTTATCACAAAAGAAAGGAGAGG 58.968 38.462 0.00 0.00 0.00 3.69
1224 3637 8.922058 AGCTATGCATTTATCACAAAAGAAAG 57.078 30.769 3.54 0.00 0.00 2.62
1225 3638 9.787532 GTAGCTATGCATTTATCACAAAAGAAA 57.212 29.630 3.54 0.00 0.00 2.52
1226 3639 9.177608 AGTAGCTATGCATTTATCACAAAAGAA 57.822 29.630 3.54 0.00 0.00 2.52
1227 3640 8.737168 AGTAGCTATGCATTTATCACAAAAGA 57.263 30.769 3.54 0.00 0.00 2.52
1229 3642 9.830975 TCTAGTAGCTATGCATTTATCACAAAA 57.169 29.630 3.54 0.00 0.00 2.44
1251 3664 5.241949 GTCACAGGTGGGACTATATGTCTAG 59.758 48.000 5.05 0.00 44.75 2.43
1265 3679 0.679505 TTCTTCGAGGTCACAGGTGG 59.320 55.000 0.00 0.00 0.00 4.61
1294 3708 5.163437 CCTTCCTAGTCTGTATAACACCACC 60.163 48.000 0.00 0.00 0.00 4.61
1295 3709 5.421374 ACCTTCCTAGTCTGTATAACACCAC 59.579 44.000 0.00 0.00 0.00 4.16
1296 3710 5.421056 CACCTTCCTAGTCTGTATAACACCA 59.579 44.000 0.00 0.00 0.00 4.17
1330 3744 9.836076 CAAAATATGTAAGCACTATGATGATGG 57.164 33.333 0.00 0.00 0.00 3.51
1334 3748 9.874215 CAGTCAAAATATGTAAGCACTATGATG 57.126 33.333 0.00 0.00 0.00 3.07
1335 3749 9.618890 ACAGTCAAAATATGTAAGCACTATGAT 57.381 29.630 0.00 0.00 0.00 2.45
1352 3766 1.824230 AGCTGCACCAAACAGTCAAAA 59.176 42.857 1.02 0.00 37.47 2.44
1472 3889 4.611581 GCTGAACAAAGAAAGTAAGGAGCG 60.612 45.833 0.00 0.00 0.00 5.03
1504 3921 2.033662 GCTCACACGACAAAACTGAGTC 60.034 50.000 0.00 0.00 32.50 3.36
1624 4044 4.548494 TGTCGCTAATTTGTCGTACTCAA 58.452 39.130 0.00 0.00 0.00 3.02
1642 4062 6.024049 GGAAGCTCATGACTAAAATTTGTCG 58.976 40.000 0.00 0.00 36.03 4.35
1647 4067 7.148407 CGTACTTGGAAGCTCATGACTAAAATT 60.148 37.037 0.00 0.00 0.00 1.82
1648 4068 6.313905 CGTACTTGGAAGCTCATGACTAAAAT 59.686 38.462 0.00 0.00 0.00 1.82
1649 4069 5.637810 CGTACTTGGAAGCTCATGACTAAAA 59.362 40.000 0.00 0.00 0.00 1.52
1650 4070 5.047590 TCGTACTTGGAAGCTCATGACTAAA 60.048 40.000 0.00 0.00 0.00 1.85
1651 4071 4.461431 TCGTACTTGGAAGCTCATGACTAA 59.539 41.667 0.00 0.00 0.00 2.24
1652 4072 4.014406 TCGTACTTGGAAGCTCATGACTA 58.986 43.478 0.00 0.00 0.00 2.59
1653 4073 2.826128 TCGTACTTGGAAGCTCATGACT 59.174 45.455 0.00 0.00 0.00 3.41
1654 4074 2.924290 GTCGTACTTGGAAGCTCATGAC 59.076 50.000 0.00 0.00 0.00 3.06
1655 4075 2.560981 TGTCGTACTTGGAAGCTCATGA 59.439 45.455 0.00 0.00 0.00 3.07
1656 4076 2.959516 TGTCGTACTTGGAAGCTCATG 58.040 47.619 0.00 0.00 0.00 3.07
1657 4077 3.678056 TTGTCGTACTTGGAAGCTCAT 57.322 42.857 0.00 0.00 0.00 2.90
1658 4078 3.462483 TTTGTCGTACTTGGAAGCTCA 57.538 42.857 0.00 0.00 0.00 4.26
1659 4079 5.446073 GCTAATTTGTCGTACTTGGAAGCTC 60.446 44.000 0.00 0.00 0.00 4.09
1660 4080 4.392138 GCTAATTTGTCGTACTTGGAAGCT 59.608 41.667 0.00 0.00 0.00 3.74
1661 4081 4.648970 GCTAATTTGTCGTACTTGGAAGC 58.351 43.478 0.00 0.00 0.00 3.86
1662 4082 4.624024 TCGCTAATTTGTCGTACTTGGAAG 59.376 41.667 0.00 0.00 0.00 3.46
1663 4083 4.386652 GTCGCTAATTTGTCGTACTTGGAA 59.613 41.667 0.00 0.00 0.00 3.53
1664 4084 3.922240 GTCGCTAATTTGTCGTACTTGGA 59.078 43.478 0.00 0.00 0.00 3.53
1665 4085 3.676172 TGTCGCTAATTTGTCGTACTTGG 59.324 43.478 0.00 0.00 0.00 3.61
1666 4086 4.896562 TGTCGCTAATTTGTCGTACTTG 57.103 40.909 0.00 0.00 0.00 3.16
1667 4087 5.910637 TTTGTCGCTAATTTGTCGTACTT 57.089 34.783 0.00 0.00 0.00 2.24
1668 4088 6.476243 AATTTGTCGCTAATTTGTCGTACT 57.524 33.333 0.00 0.00 0.00 2.73
1669 4089 7.543127 AAAATTTGTCGCTAATTTGTCGTAC 57.457 32.000 10.66 0.00 35.85 3.67
1670 4090 8.497554 ACTAAAATTTGTCGCTAATTTGTCGTA 58.502 29.630 10.66 2.93 35.85 3.43
1671 4091 7.357303 ACTAAAATTTGTCGCTAATTTGTCGT 58.643 30.769 10.66 7.27 35.85 4.34
1672 4092 7.532546 TGACTAAAATTTGTCGCTAATTTGTCG 59.467 33.333 10.66 0.00 35.85 4.35
1673 4093 8.722342 TGACTAAAATTTGTCGCTAATTTGTC 57.278 30.769 10.66 12.91 35.85 3.18
1674 4094 9.128107 CATGACTAAAATTTGTCGCTAATTTGT 57.872 29.630 10.66 7.14 35.85 2.83
1675 4095 9.340695 TCATGACTAAAATTTGTCGCTAATTTG 57.659 29.630 10.66 0.00 35.85 2.32
1676 4096 9.559958 CTCATGACTAAAATTTGTCGCTAATTT 57.440 29.630 0.00 6.31 36.91 1.82
1677 4097 7.698130 GCTCATGACTAAAATTTGTCGCTAATT 59.302 33.333 0.00 0.00 36.03 1.40
1678 4098 7.066284 AGCTCATGACTAAAATTTGTCGCTAAT 59.934 33.333 0.00 0.00 36.03 1.73
1679 4099 6.371548 AGCTCATGACTAAAATTTGTCGCTAA 59.628 34.615 0.00 0.00 36.03 3.09
1680 4100 5.874810 AGCTCATGACTAAAATTTGTCGCTA 59.125 36.000 0.00 0.00 36.03 4.26
1681 4101 4.697352 AGCTCATGACTAAAATTTGTCGCT 59.303 37.500 0.00 0.00 36.03 4.93
1682 4102 4.974591 AGCTCATGACTAAAATTTGTCGC 58.025 39.130 0.00 0.00 36.03 5.19
1683 4103 6.024049 GGAAGCTCATGACTAAAATTTGTCG 58.976 40.000 0.00 0.00 36.03 4.35
1684 4104 6.024049 CGGAAGCTCATGACTAAAATTTGTC 58.976 40.000 0.00 0.00 34.28 3.18
1685 4105 5.705441 TCGGAAGCTCATGACTAAAATTTGT 59.295 36.000 0.00 0.00 0.00 2.83
1686 4106 6.128172 ACTCGGAAGCTCATGACTAAAATTTG 60.128 38.462 0.00 0.00 0.00 2.32
1687 4107 5.940470 ACTCGGAAGCTCATGACTAAAATTT 59.060 36.000 0.00 0.00 0.00 1.82
1688 4108 5.491982 ACTCGGAAGCTCATGACTAAAATT 58.508 37.500 0.00 0.00 0.00 1.82
1689 4109 5.091261 ACTCGGAAGCTCATGACTAAAAT 57.909 39.130 0.00 0.00 0.00 1.82
1690 4110 4.537135 ACTCGGAAGCTCATGACTAAAA 57.463 40.909 0.00 0.00 0.00 1.52
1691 4111 4.438336 CGTACTCGGAAGCTCATGACTAAA 60.438 45.833 0.00 0.00 0.00 1.85
1692 4112 3.064958 CGTACTCGGAAGCTCATGACTAA 59.935 47.826 0.00 0.00 0.00 2.24
1693 4113 2.612672 CGTACTCGGAAGCTCATGACTA 59.387 50.000 0.00 0.00 0.00 2.59
1694 4114 1.402259 CGTACTCGGAAGCTCATGACT 59.598 52.381 0.00 0.00 0.00 3.41
1695 4115 1.400846 TCGTACTCGGAAGCTCATGAC 59.599 52.381 0.00 0.00 37.69 3.06
1696 4116 1.400846 GTCGTACTCGGAAGCTCATGA 59.599 52.381 0.00 0.00 37.69 3.07
1697 4117 1.132453 TGTCGTACTCGGAAGCTCATG 59.868 52.381 0.00 0.00 37.69 3.07
1698 4118 1.460504 TGTCGTACTCGGAAGCTCAT 58.539 50.000 0.00 0.00 37.69 2.90
1699 4119 1.241165 TTGTCGTACTCGGAAGCTCA 58.759 50.000 0.00 0.00 37.69 4.26
1700 4120 2.342910 TTTGTCGTACTCGGAAGCTC 57.657 50.000 0.00 0.00 37.69 4.09
1701 4121 3.314541 AATTTGTCGTACTCGGAAGCT 57.685 42.857 0.00 0.00 37.69 3.74
1702 4122 4.400036 AAAATTTGTCGTACTCGGAAGC 57.600 40.909 0.00 0.00 37.69 3.86
1703 4123 6.364165 TGACTAAAATTTGTCGTACTCGGAAG 59.636 38.462 0.00 0.00 36.03 3.46
1704 4124 6.215121 TGACTAAAATTTGTCGTACTCGGAA 58.785 36.000 0.00 0.00 36.03 4.30
1705 4125 5.771469 TGACTAAAATTTGTCGTACTCGGA 58.229 37.500 0.00 0.00 36.03 4.55
1706 4126 6.309494 TCATGACTAAAATTTGTCGTACTCGG 59.691 38.462 0.00 0.00 36.03 4.63
1707 4127 7.273188 TCATGACTAAAATTTGTCGTACTCG 57.727 36.000 0.00 0.00 36.03 4.18
1708 4128 7.063544 AGCTCATGACTAAAATTTGTCGTACTC 59.936 37.037 0.00 0.00 36.03 2.59
1709 4129 6.874134 AGCTCATGACTAAAATTTGTCGTACT 59.126 34.615 0.00 1.06 36.03 2.73
1710 4130 7.061752 AGCTCATGACTAAAATTTGTCGTAC 57.938 36.000 0.00 0.00 36.03 3.67
1711 4131 7.148474 GGAAGCTCATGACTAAAATTTGTCGTA 60.148 37.037 0.00 0.00 36.03 3.43
1712 4132 6.348540 GGAAGCTCATGACTAAAATTTGTCGT 60.349 38.462 0.00 0.00 36.03 4.34
1713 4133 6.024049 GGAAGCTCATGACTAAAATTTGTCG 58.976 40.000 0.00 0.00 36.03 4.35
1714 4134 6.024049 CGGAAGCTCATGACTAAAATTTGTC 58.976 40.000 0.00 0.00 34.28 3.18
1715 4135 5.705441 TCGGAAGCTCATGACTAAAATTTGT 59.295 36.000 0.00 0.00 0.00 2.83
1716 4136 6.128172 ACTCGGAAGCTCATGACTAAAATTTG 60.128 38.462 0.00 0.00 0.00 2.32
1717 4137 5.940470 ACTCGGAAGCTCATGACTAAAATTT 59.060 36.000 0.00 0.00 0.00 1.82
1734 4154 3.119884 TCGCTAATTTGTCGTACTCGGAA 60.120 43.478 0.00 0.00 37.69 4.30
1758 4178 5.940470 ACTCGGAAGCTCATGACTAAAATTT 59.060 36.000 0.00 0.00 0.00 1.82
1759 4179 5.491982 ACTCGGAAGCTCATGACTAAAATT 58.508 37.500 0.00 0.00 0.00 1.82
1760 4180 5.091261 ACTCGGAAGCTCATGACTAAAAT 57.909 39.130 0.00 0.00 0.00 1.82
1761 4181 4.537135 ACTCGGAAGCTCATGACTAAAA 57.463 40.909 0.00 0.00 0.00 1.52
1762 4182 4.438336 CGTACTCGGAAGCTCATGACTAAA 60.438 45.833 0.00 0.00 0.00 1.85
1763 4183 3.064958 CGTACTCGGAAGCTCATGACTAA 59.935 47.826 0.00 0.00 0.00 2.24
1764 4184 2.612672 CGTACTCGGAAGCTCATGACTA 59.387 50.000 0.00 0.00 0.00 2.59
1765 4185 1.402259 CGTACTCGGAAGCTCATGACT 59.598 52.381 0.00 0.00 0.00 3.41
1766 4186 1.400846 TCGTACTCGGAAGCTCATGAC 59.599 52.381 0.00 0.00 37.69 3.06
1767 4187 1.400846 GTCGTACTCGGAAGCTCATGA 59.599 52.381 0.00 0.00 37.69 3.07
1768 4188 1.132453 TGTCGTACTCGGAAGCTCATG 59.868 52.381 0.00 0.00 37.69 3.07
1769 4189 1.460504 TGTCGTACTCGGAAGCTCAT 58.539 50.000 0.00 0.00 37.69 2.90
1770 4190 1.241165 TTGTCGTACTCGGAAGCTCA 58.759 50.000 0.00 0.00 37.69 4.26
1771 4191 1.984297 GTTTGTCGTACTCGGAAGCTC 59.016 52.381 0.00 0.00 37.69 4.09
1772 4192 1.612463 AGTTTGTCGTACTCGGAAGCT 59.388 47.619 0.00 0.00 37.69 3.74
1773 4193 2.061740 AGTTTGTCGTACTCGGAAGC 57.938 50.000 0.00 0.00 37.69 3.86
1774 4194 3.169733 GCTAGTTTGTCGTACTCGGAAG 58.830 50.000 0.00 0.00 37.69 3.46
1775 4195 2.413239 CGCTAGTTTGTCGTACTCGGAA 60.413 50.000 0.00 0.00 37.69 4.30
1776 4196 1.129251 CGCTAGTTTGTCGTACTCGGA 59.871 52.381 0.00 0.00 37.69 4.55
1777 4197 1.129251 TCGCTAGTTTGTCGTACTCGG 59.871 52.381 0.00 0.00 37.69 4.63
1778 4198 2.164427 GTCGCTAGTTTGTCGTACTCG 58.836 52.381 0.00 0.00 38.55 4.18
1779 4199 3.193157 TGTCGCTAGTTTGTCGTACTC 57.807 47.619 0.00 0.00 0.00 2.59
1780 4200 3.631145 TTGTCGCTAGTTTGTCGTACT 57.369 42.857 0.00 0.00 0.00 2.73
1781 4201 4.898328 ATTTGTCGCTAGTTTGTCGTAC 57.102 40.909 0.00 0.00 0.00 3.67
1782 4202 5.910637 AAATTTGTCGCTAGTTTGTCGTA 57.089 34.783 0.00 0.00 0.00 3.43
1783 4203 4.806342 AAATTTGTCGCTAGTTTGTCGT 57.194 36.364 0.00 0.00 0.00 4.34
1784 4204 6.360329 ACTAAAATTTGTCGCTAGTTTGTCG 58.640 36.000 0.00 0.00 0.00 4.35
1785 4205 7.349711 TGACTAAAATTTGTCGCTAGTTTGTC 58.650 34.615 0.00 0.00 36.03 3.18
1786 4206 7.254227 TGACTAAAATTTGTCGCTAGTTTGT 57.746 32.000 0.00 0.00 36.03 2.83
1787 4207 8.015087 TCATGACTAAAATTTGTCGCTAGTTTG 58.985 33.333 0.00 0.00 36.03 2.93
1788 4208 8.094798 TCATGACTAAAATTTGTCGCTAGTTT 57.905 30.769 0.00 0.00 36.03 2.66
1789 4209 7.624344 GCTCATGACTAAAATTTGTCGCTAGTT 60.624 37.037 0.00 0.00 36.03 2.24
1790 4210 6.183360 GCTCATGACTAAAATTTGTCGCTAGT 60.183 38.462 0.00 0.00 36.03 2.57
1791 4211 6.036517 AGCTCATGACTAAAATTTGTCGCTAG 59.963 38.462 0.00 0.00 36.03 3.42
1792 4212 5.874810 AGCTCATGACTAAAATTTGTCGCTA 59.125 36.000 0.00 0.00 36.03 4.26
1793 4213 4.697352 AGCTCATGACTAAAATTTGTCGCT 59.303 37.500 0.00 0.00 36.03 4.93
1794 4214 4.974591 AGCTCATGACTAAAATTTGTCGC 58.025 39.130 0.00 0.00 36.03 5.19
1795 4215 6.024049 GGAAGCTCATGACTAAAATTTGTCG 58.976 40.000 0.00 0.00 36.03 4.35
1796 4216 6.024049 CGGAAGCTCATGACTAAAATTTGTC 58.976 40.000 0.00 0.00 34.28 3.18
1797 4217 5.705441 TCGGAAGCTCATGACTAAAATTTGT 59.295 36.000 0.00 0.00 0.00 2.83
1798 4218 6.128172 ACTCGGAAGCTCATGACTAAAATTTG 60.128 38.462 0.00 0.00 0.00 2.32
1799 4219 5.940470 ACTCGGAAGCTCATGACTAAAATTT 59.060 36.000 0.00 0.00 0.00 1.82
1834 4254 4.697352 AGCTCATGACTAAAATTTGTCGCT 59.303 37.500 0.00 0.00 36.03 4.93
1835 4255 4.974591 AGCTCATGACTAAAATTTGTCGC 58.025 39.130 0.00 0.00 36.03 5.19
1836 4256 6.024049 GGAAGCTCATGACTAAAATTTGTCG 58.976 40.000 0.00 0.00 36.03 4.35
1837 4257 6.024049 CGGAAGCTCATGACTAAAATTTGTC 58.976 40.000 0.00 0.00 34.28 3.18
1838 4258 5.705441 TCGGAAGCTCATGACTAAAATTTGT 59.295 36.000 0.00 0.00 0.00 2.83
1839 4259 6.128172 ACTCGGAAGCTCATGACTAAAATTTG 60.128 38.462 0.00 0.00 0.00 2.32
1840 4260 5.940470 ACTCGGAAGCTCATGACTAAAATTT 59.060 36.000 0.00 0.00 0.00 1.82
1841 4261 5.491982 ACTCGGAAGCTCATGACTAAAATT 58.508 37.500 0.00 0.00 0.00 1.82
1842 4262 5.091261 ACTCGGAAGCTCATGACTAAAAT 57.909 39.130 0.00 0.00 0.00 1.82
1843 4263 4.537135 ACTCGGAAGCTCATGACTAAAA 57.463 40.909 0.00 0.00 0.00 1.52
1844 4264 4.438336 CGTACTCGGAAGCTCATGACTAAA 60.438 45.833 0.00 0.00 0.00 1.85
1926 4346 2.808543 ACATGCGTTTCCTTCACTCTTC 59.191 45.455 0.00 0.00 0.00 2.87
1943 4363 4.283212 AGAACCAATTAACCCACCAACATG 59.717 41.667 0.00 0.00 0.00 3.21
1966 4386 8.662255 TCCATTCTAACCCTTAAAACTCAACTA 58.338 33.333 0.00 0.00 0.00 2.24
1973 4393 7.619964 TCGATTCCATTCTAACCCTTAAAAC 57.380 36.000 0.00 0.00 0.00 2.43
2052 4472 7.921041 TCTCTACTGATTTCCATATTCCAGT 57.079 36.000 0.00 0.00 38.30 4.00
2053 4473 9.050601 GTTTCTCTACTGATTTCCATATTCCAG 57.949 37.037 0.00 0.00 0.00 3.86
2054 4474 8.772250 AGTTTCTCTACTGATTTCCATATTCCA 58.228 33.333 0.00 0.00 0.00 3.53
2147 4567 7.181125 AGGACTGTATGGACTCAAAGATAAAGT 59.819 37.037 0.00 0.00 0.00 2.66
2205 4625 1.726853 AGCAATCACGGCAGAGTTAC 58.273 50.000 0.00 0.00 0.00 2.50
2224 4644 9.014297 GGAGAGAAAATGTCAAATAGGAAGAAA 57.986 33.333 0.00 0.00 0.00 2.52
2479 4901 6.365520 AGGTATATTTCCAATGTTCCCTGTC 58.634 40.000 0.00 0.00 0.00 3.51
2522 4944 1.128200 TTGGATGGGTCCCGACATAG 58.872 55.000 2.65 0.00 44.41 2.23
2572 4994 3.909430 TGAGATATACGCGTTTCCATCC 58.091 45.455 20.78 9.60 0.00 3.51
2584 5006 5.794894 ACCCATTGACCGAATGAGATATAC 58.205 41.667 0.00 0.00 43.87 1.47
2596 5018 1.679139 ATGCACATACCCATTGACCG 58.321 50.000 0.00 0.00 0.00 4.79
2617 5039 1.202879 ACATGCACCTCCCGAAAAGAA 60.203 47.619 0.00 0.00 0.00 2.52
2618 5040 0.400213 ACATGCACCTCCCGAAAAGA 59.600 50.000 0.00 0.00 0.00 2.52
2619 5041 0.523072 CACATGCACCTCCCGAAAAG 59.477 55.000 0.00 0.00 0.00 2.27
2632 5056 6.954944 TCTAAGTAAAACACTGAACACATGC 58.045 36.000 0.00 0.00 37.63 4.06
2633 5057 8.612619 ACTTCTAAGTAAAACACTGAACACATG 58.387 33.333 0.00 0.00 37.63 3.21
2690 5115 9.175312 CATATTCCTGATATAAATGCTGAGCTT 57.825 33.333 5.83 0.00 29.71 3.74
2722 5147 3.858247 TCAGCACATGATCTCAGAACAG 58.142 45.455 0.00 0.00 31.12 3.16
2723 5148 3.967332 TCAGCACATGATCTCAGAACA 57.033 42.857 0.00 0.00 31.12 3.18
2754 5179 0.038892 GCACCAACCTGCATCAAGTG 60.039 55.000 0.00 0.00 37.11 3.16
2755 5180 1.518056 CGCACCAACCTGCATCAAGT 61.518 55.000 0.00 0.00 36.94 3.16
2756 5181 1.210931 CGCACCAACCTGCATCAAG 59.789 57.895 0.00 0.00 36.94 3.02
2758 5183 0.608856 AATCGCACCAACCTGCATCA 60.609 50.000 0.00 0.00 36.94 3.07
2759 5184 1.378531 TAATCGCACCAACCTGCATC 58.621 50.000 0.00 0.00 36.94 3.91
2760 5185 2.057137 ATAATCGCACCAACCTGCAT 57.943 45.000 0.00 0.00 36.94 3.96
2761 5186 1.472082 CAATAATCGCACCAACCTGCA 59.528 47.619 0.00 0.00 36.94 4.41
2819 5244 2.619931 TCACCATCAAAGGTCTCTCCA 58.380 47.619 0.00 0.00 40.77 3.86
2973 5398 9.543231 TTTTACCTTTGATCCTAGAGAAGTAGA 57.457 33.333 0.00 0.00 0.00 2.59
3114 5541 7.921786 TTTAGGAATTTCACCACACATCTAG 57.078 36.000 0.00 0.00 0.00 2.43
3222 5649 8.995027 TTCCAAGGCACAAAATACAGATATAT 57.005 30.769 0.00 0.00 0.00 0.86
3248 5675 8.822805 AGACCTGTTCCATAGTGTAAAATTAGA 58.177 33.333 0.00 0.00 0.00 2.10
3398 5825 5.473846 TGCAAGGTCCGTGTATATTTGAAAA 59.526 36.000 6.67 0.00 0.00 2.29
3413 5840 4.521256 TGTAGTTTAATTGGTGCAAGGTCC 59.479 41.667 0.00 0.00 0.00 4.46
3479 5914 7.040823 GGAATCATAGCTTCCCTGAAAATGTAG 60.041 40.741 0.00 0.00 36.89 2.74
3480 5915 6.772716 GGAATCATAGCTTCCCTGAAAATGTA 59.227 38.462 0.00 0.00 36.89 2.29
3610 6053 2.804527 CGCATCTCCTCACATACAATGG 59.195 50.000 0.00 0.00 33.60 3.16
3631 6075 5.813157 GGCTAGTGTTAAGATCTGGAGAAAC 59.187 44.000 0.00 0.00 0.00 2.78
3658 6102 3.199946 TCACCAGGACCTGATGAATAACC 59.800 47.826 23.77 0.00 30.02 2.85
3768 6213 6.434028 TGAAACCAAGCTTATCAACTAGCATT 59.566 34.615 0.00 0.00 39.85 3.56
3780 6225 5.144100 TCTTTGGGAATGAAACCAAGCTTA 58.856 37.500 0.00 0.00 46.49 3.09
3783 6228 4.021192 TCATCTTTGGGAATGAAACCAAGC 60.021 41.667 0.00 0.00 46.49 4.01
3886 6331 8.807948 AAACATTATGGTAAGTGATAAGCAGT 57.192 30.769 0.00 0.00 0.00 4.40
4015 6543 8.817100 CAGATCTCAACTAACAACGCATTATTA 58.183 33.333 0.00 0.00 0.00 0.98
4072 6600 5.871524 GTCTTGCAGATCTCAACTAACATGA 59.128 40.000 0.00 0.00 0.00 3.07
4271 6800 5.220303 GCATACTTAGAAGAGCAACGTCAAG 60.220 44.000 0.00 0.00 0.00 3.02
4278 6807 2.168521 AGCGGCATACTTAGAAGAGCAA 59.831 45.455 1.45 0.00 0.00 3.91
4330 6863 1.090625 CACTGCTGCAGATGAGAGCC 61.091 60.000 34.28 0.00 35.18 4.70
4359 6892 3.085208 TGAGCATCAAGGAATCGCC 57.915 52.632 0.00 0.00 45.97 5.54
4398 6931 5.300969 TTCAAGTTGAATGCAGTATCTGC 57.699 39.130 14.35 13.85 43.38 4.26
4410 6943 7.624360 ACTATTTGCGGATATTCAAGTTGAA 57.376 32.000 20.14 20.14 41.09 2.69
4440 6974 9.690913 ATTATCTTCTTCCATGTTTTCTGATGA 57.309 29.630 0.00 0.00 0.00 2.92
4494 7030 1.973281 AGCTGCCACCATGGTTTCG 60.973 57.895 16.84 6.84 40.46 3.46
4536 7072 3.912248 ACGAGGAACCCATATCTGTACT 58.088 45.455 0.00 0.00 0.00 2.73
4600 7136 0.836606 TGACAAGTGGCAGAGGAACA 59.163 50.000 0.00 0.00 0.00 3.18
4603 7139 0.325933 CCATGACAAGTGGCAGAGGA 59.674 55.000 2.94 0.00 35.91 3.71
4604 7140 2.864114 CCATGACAAGTGGCAGAGG 58.136 57.895 0.00 0.00 35.91 3.69
4612 7148 1.296715 GTCCCTCGCCATGACAAGT 59.703 57.895 0.00 0.00 0.00 3.16
4614 7150 2.225791 CTCGTCCCTCGCCATGACAA 62.226 60.000 0.00 0.00 39.67 3.18
4615 7151 2.678580 TCGTCCCTCGCCATGACA 60.679 61.111 0.00 0.00 39.67 3.58
4617 7153 1.043116 ATTCTCGTCCCTCGCCATGA 61.043 55.000 0.00 0.00 39.67 3.07
4618 7154 0.598680 GATTCTCGTCCCTCGCCATG 60.599 60.000 0.00 0.00 39.67 3.66
4619 7155 1.742768 GATTCTCGTCCCTCGCCAT 59.257 57.895 0.00 0.00 39.67 4.40
4620 7156 2.771639 CGATTCTCGTCCCTCGCCA 61.772 63.158 0.00 0.00 39.67 5.69
4643 7179 0.111832 ATATGGGCAGGCACCAGATG 59.888 55.000 7.72 0.00 42.15 2.90
4644 7180 0.855598 AATATGGGCAGGCACCAGAT 59.144 50.000 0.00 5.65 41.41 2.90
4645 7181 1.517238 TAATATGGGCAGGCACCAGA 58.483 50.000 0.00 3.80 42.15 3.86
4646 7182 2.592102 ATAATATGGGCAGGCACCAG 57.408 50.000 0.00 0.00 42.15 4.00
4672 7209 4.380550 CGGATCTAAAAGGTTTTTCAGGGC 60.381 45.833 0.00 0.00 0.00 5.19
4721 7258 1.156736 CAACCCAACAGACGGATCAC 58.843 55.000 0.00 0.00 0.00 3.06
4732 7283 5.767816 ACAGAATACACTTTCAACCCAAC 57.232 39.130 0.00 0.00 0.00 3.77
4735 7286 7.040686 ACAACATACAGAATACACTTTCAACCC 60.041 37.037 0.00 0.00 0.00 4.11
4743 7294 6.293407 GCACAACACAACATACAGAATACACT 60.293 38.462 0.00 0.00 0.00 3.55
4760 7317 1.226945 AGCGCAAAAGGCACAACAC 60.227 52.632 11.47 0.00 45.17 3.32
4761 7318 1.226916 CAGCGCAAAAGGCACAACA 60.227 52.632 11.47 0.00 45.17 3.33
4762 7319 1.208642 GACAGCGCAAAAGGCACAAC 61.209 55.000 11.47 0.00 45.17 3.32
4763 7320 1.065600 GACAGCGCAAAAGGCACAA 59.934 52.632 11.47 0.00 45.17 3.33
4764 7321 2.721231 GACAGCGCAAAAGGCACA 59.279 55.556 11.47 0.00 45.17 4.57
4765 7322 2.050077 GGACAGCGCAAAAGGCAC 60.050 61.111 11.47 0.00 45.17 5.01
4766 7323 1.827789 AAGGACAGCGCAAAAGGCA 60.828 52.632 11.47 0.00 45.17 4.75
4767 7324 1.372128 CAAGGACAGCGCAAAAGGC 60.372 57.895 11.47 0.00 39.90 4.35
4768 7325 0.318107 CACAAGGACAGCGCAAAAGG 60.318 55.000 11.47 0.00 0.00 3.11
4769 7326 0.318107 CCACAAGGACAGCGCAAAAG 60.318 55.000 11.47 0.00 36.89 2.27
4770 7327 1.732917 CCACAAGGACAGCGCAAAA 59.267 52.632 11.47 0.00 36.89 2.44
4771 7328 2.192861 CCCACAAGGACAGCGCAAA 61.193 57.895 11.47 0.00 38.24 3.68
4775 7332 2.738521 CGACCCACAAGGACAGCG 60.739 66.667 0.00 0.00 39.89 5.18
4787 7344 1.006571 TGAACTCGAGCAACGACCC 60.007 57.895 13.61 0.00 46.45 4.46
5002 7581 4.726317 TGGTTTTCCAGATCCATCTCCATA 59.274 41.667 0.00 0.00 46.22 2.74
5003 7582 3.528905 TGGTTTTCCAGATCCATCTCCAT 59.471 43.478 0.00 0.00 46.22 3.41
5004 7583 2.918934 TGGTTTTCCAGATCCATCTCCA 59.081 45.455 0.00 0.00 46.22 3.86
5005 7584 3.652057 TGGTTTTCCAGATCCATCTCC 57.348 47.619 0.00 0.00 46.22 3.71
5021 7600 1.825474 ACGAGATTCAGATCGGTGGTT 59.175 47.619 0.00 0.00 43.12 3.67
5046 7625 3.440228 GATACGCAGTTCTCTTCTGACC 58.560 50.000 0.00 0.00 37.78 4.02
5074 7653 1.560923 GTGAGATTCCGTCCACATCG 58.439 55.000 0.00 0.00 31.96 3.84
5079 7658 2.355986 CCCGGTGAGATTCCGTCCA 61.356 63.158 0.00 0.00 45.63 4.02
5120 7909 1.081906 GTACTCGACGCAACCACGA 60.082 57.895 0.00 0.00 36.70 4.35
5121 7910 1.081641 AGTACTCGACGCAACCACG 60.082 57.895 0.00 0.00 39.50 4.94
5122 7911 1.007336 CCAGTACTCGACGCAACCAC 61.007 60.000 0.00 0.00 0.00 4.16
5123 7912 1.287815 CCAGTACTCGACGCAACCA 59.712 57.895 0.00 0.00 0.00 3.67
5124 7913 0.523072 TACCAGTACTCGACGCAACC 59.477 55.000 0.00 0.00 0.00 3.77
5185 7974 2.407609 CGTGTTCGCACTAACGTGTTAC 60.408 50.000 0.00 0.00 45.53 2.50
5202 7991 0.679505 TCCAACTCTAGCTTGCGTGT 59.320 50.000 0.00 0.00 0.00 4.49
5215 8004 1.794714 AGTATCCGCTCCATCCAACT 58.205 50.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.