Multiple sequence alignment - TraesCS3A01G341200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G341200 chr3A 100.000 3982 0 0 1 3982 588656707 588660688 0.000000e+00 7354.0
1 TraesCS3A01G341200 chr3A 93.510 416 27 0 2585 3000 588728010 588728425 1.570000e-173 619.0
2 TraesCS3A01G341200 chr3A 98.662 299 4 0 3684 3982 389824703 389825001 7.580000e-147 531.0
3 TraesCS3A01G341200 chr3A 97.368 304 6 2 3680 3981 406348438 406348135 2.120000e-142 516.0
4 TraesCS3A01G341200 chr3A 91.268 355 31 0 2144 2498 588725643 588725997 5.980000e-133 484.0
5 TraesCS3A01G341200 chr3A 91.117 349 19 9 970 1318 588724498 588724834 2.800000e-126 462.0
6 TraesCS3A01G341200 chr3A 90.909 330 25 3 1721 2045 588725259 588725588 4.720000e-119 438.0
7 TraesCS3A01G341200 chr3A 90.311 289 24 4 1425 1710 588724911 588725198 3.760000e-100 375.0
8 TraesCS3A01G341200 chr3A 83.085 201 27 5 3460 3658 257017796 257017991 4.090000e-40 176.0
9 TraesCS3A01G341200 chr3A 92.308 39 1 2 2103 2140 588658749 588658786 2.000000e-03 54.7
10 TraesCS3A01G341200 chr3A 92.308 39 1 2 2043 2080 588658809 588658846 2.000000e-03 54.7
11 TraesCS3A01G341200 chr3B 92.714 2786 124 36 824 3570 586340803 586343548 0.000000e+00 3947.0
12 TraesCS3A01G341200 chr3B 86.280 1086 106 27 970 2044 586421935 586422988 0.000000e+00 1140.0
13 TraesCS3A01G341200 chr3B 93.990 416 25 0 2585 3000 586426567 586426982 7.260000e-177 630.0
14 TraesCS3A01G341200 chr3B 85.586 555 75 5 1 553 553063626 553063075 9.600000e-161 577.0
15 TraesCS3A01G341200 chr3B 89.863 365 36 1 2135 2498 586423030 586423394 6.030000e-128 468.0
16 TraesCS3A01G341200 chr3D 93.825 2332 84 34 824 3138 446854069 446856357 0.000000e+00 3454.0
17 TraesCS3A01G341200 chr3D 87.759 580 47 4 3129 3685 446859168 446859746 0.000000e+00 656.0
18 TraesCS3A01G341200 chr3D 87.845 543 59 4 1 542 582501166 582500630 7.260000e-177 630.0
19 TraesCS3A01G341200 chr3D 92.067 416 33 0 2585 3000 446912635 446913050 1.590000e-163 586.0
20 TraesCS3A01G341200 chr3D 92.603 365 26 1 2135 2498 446911252 446911616 1.270000e-144 523.0
21 TraesCS3A01G341200 chr3D 90.137 365 22 10 956 1318 446910065 446910417 2.800000e-126 462.0
22 TraesCS3A01G341200 chr3D 90.735 313 23 2 1739 2045 446910899 446911211 2.860000e-111 412.0
23 TraesCS3A01G341200 chr3D 91.200 250 17 4 1425 1670 446910604 446910852 6.380000e-88 335.0
24 TraesCS3A01G341200 chr3D 87.879 165 20 0 668 832 610824760 610824596 1.130000e-45 195.0
25 TraesCS3A01G341200 chr1A 81.723 1428 168 63 1425 2794 337985548 337986940 0.000000e+00 1105.0
26 TraesCS3A01G341200 chr1A 97.659 299 7 0 3684 3982 388528987 388528689 7.630000e-142 514.0
27 TraesCS3A01G341200 chr1A 88.485 165 18 1 676 839 575592314 575592150 8.730000e-47 198.0
28 TraesCS3A01G341200 chr1A 85.165 182 22 1 2791 2972 337987267 337987443 8.790000e-42 182.0
29 TraesCS3A01G341200 chr1A 78.761 226 41 5 3460 3683 342010074 342010294 1.150000e-30 145.0
30 TraesCS3A01G341200 chr1D 81.844 1410 154 68 1446 2794 261881237 261879869 0.000000e+00 1092.0
31 TraesCS3A01G341200 chr1D 89.729 516 49 4 1 514 447464623 447465136 0.000000e+00 656.0
32 TraesCS3A01G341200 chr1D 87.912 182 22 0 2791 2972 261879713 261879532 8.670000e-52 215.0
33 TraesCS3A01G341200 chr1B 81.343 1415 181 58 1437 2794 349839423 349840811 0.000000e+00 1074.0
34 TraesCS3A01G341200 chr1B 89.011 182 20 0 2791 2972 349840966 349841147 4.000000e-55 226.0
35 TraesCS3A01G341200 chr2D 88.068 528 62 1 1 527 392529322 392529849 3.380000e-175 625.0
36 TraesCS3A01G341200 chr2D 89.506 162 15 1 672 833 412117162 412117321 1.880000e-48 204.0
37 TraesCS3A01G341200 chr2D 81.500 200 32 4 3460 3658 176910536 176910341 4.120000e-35 159.0
38 TraesCS3A01G341200 chr7A 87.961 515 60 2 1 514 225004095 225004608 1.220000e-169 606.0
39 TraesCS3A01G341200 chr7A 97.987 298 6 0 3685 3982 94911059 94910762 5.900000e-143 518.0
40 TraesCS3A01G341200 chr7A 90.123 162 16 0 672 833 246344211 246344372 1.120000e-50 211.0
41 TraesCS3A01G341200 chr7A 89.091 165 17 1 668 831 136772211 136772047 1.880000e-48 204.0
42 TraesCS3A01G341200 chr7A 88.554 166 17 1 668 831 138536622 138536787 2.430000e-47 200.0
43 TraesCS3A01G341200 chr2A 89.201 463 46 4 1 460 203229703 203229242 3.450000e-160 575.0
44 TraesCS3A01G341200 chr2A 82.819 227 36 3 3460 3685 209201166 209201390 2.430000e-47 200.0
45 TraesCS3A01G341200 chr2A 83.500 200 28 4 3460 3658 472014736 472014931 8.790000e-42 182.0
46 TraesCS3A01G341200 chr6D 83.761 585 74 16 1 569 80335676 80335097 5.860000e-148 534.0
47 TraesCS3A01G341200 chr6D 89.697 165 16 1 668 831 115047017 115047181 4.030000e-50 209.0
48 TraesCS3A01G341200 chr2B 85.380 513 68 4 1 512 79658414 79658920 3.530000e-145 525.0
49 TraesCS3A01G341200 chr2B 88.623 167 19 0 672 838 134091675 134091509 1.880000e-48 204.0
50 TraesCS3A01G341200 chr5A 98.322 298 5 0 3685 3982 368964032 368963735 1.270000e-144 523.0
51 TraesCS3A01G341200 chr5A 80.631 222 40 2 3460 3681 435226646 435226428 6.840000e-38 169.0
52 TraesCS3A01G341200 chr4A 98.322 298 5 0 3685 3982 189618047 189618344 1.270000e-144 523.0
53 TraesCS3A01G341200 chr4A 97.659 299 7 0 3684 3982 189653951 189654249 7.630000e-142 514.0
54 TraesCS3A01G341200 chr6A 97.987 298 6 0 3685 3982 510945895 510945598 5.900000e-143 518.0
55 TraesCS3A01G341200 chr6B 85.060 502 64 7 1 500 136455069 136455561 5.940000e-138 501.0
56 TraesCS3A01G341200 chr7D 83.363 559 73 16 1 556 136688474 136689015 2.140000e-137 499.0
57 TraesCS3A01G341200 chr4D 83.946 517 67 12 3460 3967 70803978 70803469 7.740000e-132 481.0
58 TraesCS3A01G341200 chr5D 89.697 165 15 1 669 831 431780424 431780588 4.030000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G341200 chr3A 588656707 588660688 3981 False 2487.8 7354 94.872000 1 3982 3 chr3A.!!$F3 3981
1 TraesCS3A01G341200 chr3A 588724498 588728425 3927 False 475.6 619 91.423000 970 3000 5 chr3A.!!$F4 2030
2 TraesCS3A01G341200 chr3B 586340803 586343548 2745 False 3947.0 3947 92.714000 824 3570 1 chr3B.!!$F1 2746
3 TraesCS3A01G341200 chr3B 586421935 586426982 5047 False 746.0 1140 90.044333 970 3000 3 chr3B.!!$F2 2030
4 TraesCS3A01G341200 chr3B 553063075 553063626 551 True 577.0 577 85.586000 1 553 1 chr3B.!!$R1 552
5 TraesCS3A01G341200 chr3D 446854069 446859746 5677 False 2055.0 3454 90.792000 824 3685 2 chr3D.!!$F1 2861
6 TraesCS3A01G341200 chr3D 582500630 582501166 536 True 630.0 630 87.845000 1 542 1 chr3D.!!$R1 541
7 TraesCS3A01G341200 chr3D 446910065 446913050 2985 False 463.6 586 91.348400 956 3000 5 chr3D.!!$F2 2044
8 TraesCS3A01G341200 chr1A 337985548 337987443 1895 False 643.5 1105 83.444000 1425 2972 2 chr1A.!!$F2 1547
9 TraesCS3A01G341200 chr1D 447464623 447465136 513 False 656.0 656 89.729000 1 514 1 chr1D.!!$F1 513
10 TraesCS3A01G341200 chr1D 261879532 261881237 1705 True 653.5 1092 84.878000 1446 2972 2 chr1D.!!$R1 1526
11 TraesCS3A01G341200 chr1B 349839423 349841147 1724 False 650.0 1074 85.177000 1437 2972 2 chr1B.!!$F1 1535
12 TraesCS3A01G341200 chr2D 392529322 392529849 527 False 625.0 625 88.068000 1 527 1 chr2D.!!$F1 526
13 TraesCS3A01G341200 chr7A 225004095 225004608 513 False 606.0 606 87.961000 1 514 1 chr7A.!!$F2 513
14 TraesCS3A01G341200 chr6D 80335097 80335676 579 True 534.0 534 83.761000 1 569 1 chr6D.!!$R1 568
15 TraesCS3A01G341200 chr2B 79658414 79658920 506 False 525.0 525 85.380000 1 512 1 chr2B.!!$F1 511
16 TraesCS3A01G341200 chr7D 136688474 136689015 541 False 499.0 499 83.363000 1 556 1 chr7D.!!$F1 555
17 TraesCS3A01G341200 chr4D 70803469 70803978 509 True 481.0 481 83.946000 3460 3967 1 chr4D.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 633 0.111446 TCATTGGCTGACGGGGAAAA 59.889 50.0 0.0 0.0 0.00 2.29 F
621 636 0.250727 TTGGCTGACGGGGAAAAGAG 60.251 55.0 0.0 0.0 0.00 2.85 F
623 638 0.253327 GGCTGACGGGGAAAAGAGAT 59.747 55.0 0.0 0.0 0.00 2.75 F
2201 2426 0.179043 TACTGGCAACCAACAGCGAA 60.179 50.0 0.0 0.0 38.25 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2312 0.038251 TGCAGGTGAGAGCACGTTAG 60.038 55.0 0.00 0.0 46.09 2.34 R
2115 2316 0.457443 TAGATGCAGGTGAGAGCACG 59.543 55.0 0.00 0.0 46.09 5.34 R
2456 2690 1.116308 GGAGAGAAGGGTACAGCCTC 58.884 60.0 0.00 0.0 37.43 4.70 R
3617 11437 0.035534 ATGGCGCACATACAACTGGA 60.036 50.0 10.83 0.0 38.26 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.089434 AGCCTCCTCCAAATCTGAATTTTT 58.911 37.500 0.00 0.00 32.69 1.94
71 72 2.350895 CCACCATCGCCTCCAACA 59.649 61.111 0.00 0.00 0.00 3.33
75 76 1.750399 CCATCGCCTCCAACAAGGG 60.750 63.158 0.00 0.00 36.88 3.95
76 77 2.044946 ATCGCCTCCAACAAGGGC 60.045 61.111 0.00 0.00 42.18 5.19
77 78 2.606587 ATCGCCTCCAACAAGGGCT 61.607 57.895 0.00 0.00 43.29 5.19
79 80 1.224592 CGCCTCCAACAAGGGCTAT 59.775 57.895 0.00 0.00 43.29 2.97
164 165 0.905357 CCTCCTCCACTTGATCCGTT 59.095 55.000 0.00 0.00 0.00 4.44
246 247 3.836562 GACAACCAAAGGTAGAGGAGGTA 59.163 47.826 0.00 0.00 33.12 3.08
283 284 3.683937 GCCATGGCCACACACACC 61.684 66.667 27.24 0.00 34.56 4.16
290 291 3.138625 CCACACACACCTCGTCCT 58.861 61.111 0.00 0.00 0.00 3.85
312 313 0.842635 GGAGCCCACTCAAGATCCAT 59.157 55.000 0.00 0.00 45.42 3.41
391 393 1.217244 CGCACGGGCTTTACCTAGT 59.783 57.895 8.62 0.00 39.10 2.57
416 418 3.367743 CGACAACGACGGGAGGGA 61.368 66.667 0.00 0.00 42.66 4.20
425 427 2.678934 CGGGAGGGAAGACGGACA 60.679 66.667 0.00 0.00 0.00 4.02
442 455 4.565850 AGGAGGCGGAGGGGATCC 62.566 72.222 1.92 1.92 45.64 3.36
468 481 1.381327 GGTGGACGGGATCTGGAGA 60.381 63.158 0.00 0.00 0.00 3.71
469 482 0.976073 GGTGGACGGGATCTGGAGAA 60.976 60.000 0.00 0.00 0.00 2.87
506 520 2.034048 GAGGGATCTGGACGGAAGGC 62.034 65.000 0.00 0.00 39.70 4.35
510 524 2.356818 GATCTGGACGGAAGGCGGAG 62.357 65.000 0.00 0.00 43.44 4.63
553 568 1.623163 GAAGGAGGACGATAGGAGGG 58.377 60.000 0.00 0.00 43.77 4.30
554 569 0.188834 AAGGAGGACGATAGGAGGGG 59.811 60.000 0.00 0.00 43.77 4.79
555 570 0.701659 AGGAGGACGATAGGAGGGGA 60.702 60.000 0.00 0.00 43.77 4.81
556 571 0.410270 GGAGGACGATAGGAGGGGAT 59.590 60.000 0.00 0.00 43.77 3.85
557 572 1.617533 GGAGGACGATAGGAGGGGATC 60.618 61.905 0.00 0.00 43.77 3.36
558 573 1.356398 GAGGACGATAGGAGGGGATCT 59.644 57.143 0.00 0.00 43.77 2.75
559 574 1.076350 AGGACGATAGGAGGGGATCTG 59.924 57.143 0.00 0.00 43.77 2.90
560 575 1.551452 GACGATAGGAGGGGATCTGG 58.449 60.000 0.00 0.00 43.77 3.86
561 576 1.075698 GACGATAGGAGGGGATCTGGA 59.924 57.143 0.00 0.00 43.77 3.86
562 577 1.203075 ACGATAGGAGGGGATCTGGAC 60.203 57.143 0.00 0.00 43.77 4.02
563 578 1.551452 GATAGGAGGGGATCTGGACG 58.449 60.000 0.00 0.00 0.00 4.79
564 579 0.115349 ATAGGAGGGGATCTGGACGG 59.885 60.000 0.00 0.00 0.00 4.79
565 580 2.020100 TAGGAGGGGATCTGGACGGG 62.020 65.000 0.00 0.00 0.00 5.28
566 581 2.282446 GAGGGGATCTGGACGGGA 59.718 66.667 0.00 0.00 0.00 5.14
567 582 1.834822 GAGGGGATCTGGACGGGAG 60.835 68.421 0.00 0.00 0.00 4.30
568 583 2.844839 GGGGATCTGGACGGGAGG 60.845 72.222 0.00 0.00 0.00 4.30
569 584 2.282446 GGGATCTGGACGGGAGGA 59.718 66.667 0.00 0.00 0.00 3.71
570 585 1.834822 GGGATCTGGACGGGAGGAG 60.835 68.421 0.00 0.00 0.00 3.69
571 586 1.834822 GGATCTGGACGGGAGGAGG 60.835 68.421 0.00 0.00 0.00 4.30
572 587 1.834822 GATCTGGACGGGAGGAGGG 60.835 68.421 0.00 0.00 0.00 4.30
573 588 3.396822 ATCTGGACGGGAGGAGGGG 62.397 68.421 0.00 0.00 0.00 4.79
574 589 4.075793 CTGGACGGGAGGAGGGGA 62.076 72.222 0.00 0.00 0.00 4.81
575 590 3.364964 TGGACGGGAGGAGGGGAT 61.365 66.667 0.00 0.00 0.00 3.85
576 591 2.524640 GGACGGGAGGAGGGGATC 60.525 72.222 0.00 0.00 0.00 3.36
585 600 3.390280 GGAGGGGATCCGATGATCT 57.610 57.895 5.45 0.00 45.62 2.75
586 601 2.534042 GGAGGGGATCCGATGATCTA 57.466 55.000 5.45 0.00 45.62 1.98
587 602 2.104170 GGAGGGGATCCGATGATCTAC 58.896 57.143 5.45 0.00 45.62 2.59
588 603 1.746220 GAGGGGATCCGATGATCTACG 59.254 57.143 5.45 0.00 45.62 3.51
589 604 1.075698 AGGGGATCCGATGATCTACGT 59.924 52.381 5.45 0.00 45.62 3.57
590 605 1.202582 GGGGATCCGATGATCTACGTG 59.797 57.143 5.45 0.00 45.62 4.49
591 606 1.887198 GGGATCCGATGATCTACGTGT 59.113 52.381 5.45 0.00 45.62 4.49
592 607 2.351835 GGGATCCGATGATCTACGTGTG 60.352 54.545 5.45 0.00 45.62 3.82
593 608 2.351835 GGATCCGATGATCTACGTGTGG 60.352 54.545 0.00 0.00 45.62 4.17
594 609 1.758936 TCCGATGATCTACGTGTGGT 58.241 50.000 0.00 0.00 0.00 4.16
595 610 1.674441 TCCGATGATCTACGTGTGGTC 59.326 52.381 0.00 0.00 0.00 4.02
596 611 1.269102 CCGATGATCTACGTGTGGTCC 60.269 57.143 0.00 0.00 0.00 4.46
597 612 1.676529 CGATGATCTACGTGTGGTCCT 59.323 52.381 0.00 0.00 0.00 3.85
598 613 2.876550 CGATGATCTACGTGTGGTCCTA 59.123 50.000 0.00 0.00 0.00 2.94
599 614 3.502595 CGATGATCTACGTGTGGTCCTAT 59.497 47.826 0.00 0.00 0.00 2.57
600 615 4.378563 CGATGATCTACGTGTGGTCCTATC 60.379 50.000 0.00 0.00 0.00 2.08
601 616 3.893521 TGATCTACGTGTGGTCCTATCA 58.106 45.455 0.00 0.00 0.00 2.15
602 617 4.470602 TGATCTACGTGTGGTCCTATCAT 58.529 43.478 0.00 0.00 0.00 2.45
603 618 4.893524 TGATCTACGTGTGGTCCTATCATT 59.106 41.667 0.00 0.00 0.00 2.57
604 619 4.649088 TCTACGTGTGGTCCTATCATTG 57.351 45.455 0.00 0.00 0.00 2.82
605 620 2.691409 ACGTGTGGTCCTATCATTGG 57.309 50.000 0.00 0.00 0.00 3.16
606 621 1.299541 CGTGTGGTCCTATCATTGGC 58.700 55.000 0.00 0.00 0.00 4.52
607 622 1.134401 CGTGTGGTCCTATCATTGGCT 60.134 52.381 0.00 0.00 0.00 4.75
608 623 2.292267 GTGTGGTCCTATCATTGGCTG 58.708 52.381 0.00 0.00 0.00 4.85
609 624 2.092968 GTGTGGTCCTATCATTGGCTGA 60.093 50.000 0.00 0.00 38.53 4.26
610 625 2.092968 TGTGGTCCTATCATTGGCTGAC 60.093 50.000 0.00 0.00 36.48 3.51
611 626 1.138859 TGGTCCTATCATTGGCTGACG 59.861 52.381 0.00 0.00 36.48 4.35
612 627 1.541233 GGTCCTATCATTGGCTGACGG 60.541 57.143 0.00 0.00 36.48 4.79
613 628 0.758734 TCCTATCATTGGCTGACGGG 59.241 55.000 0.00 0.00 36.48 5.28
614 629 0.250467 CCTATCATTGGCTGACGGGG 60.250 60.000 0.00 0.00 36.48 5.73
615 630 0.758734 CTATCATTGGCTGACGGGGA 59.241 55.000 0.00 0.00 36.48 4.81
616 631 1.140852 CTATCATTGGCTGACGGGGAA 59.859 52.381 0.00 0.00 36.48 3.97
617 632 0.331278 ATCATTGGCTGACGGGGAAA 59.669 50.000 0.00 0.00 36.48 3.13
618 633 0.111446 TCATTGGCTGACGGGGAAAA 59.889 50.000 0.00 0.00 0.00 2.29
619 634 0.527565 CATTGGCTGACGGGGAAAAG 59.472 55.000 0.00 0.00 0.00 2.27
620 635 0.404040 ATTGGCTGACGGGGAAAAGA 59.596 50.000 0.00 0.00 0.00 2.52
621 636 0.250727 TTGGCTGACGGGGAAAAGAG 60.251 55.000 0.00 0.00 0.00 2.85
622 637 1.125093 TGGCTGACGGGGAAAAGAGA 61.125 55.000 0.00 0.00 0.00 3.10
623 638 0.253327 GGCTGACGGGGAAAAGAGAT 59.747 55.000 0.00 0.00 0.00 2.75
624 639 1.373570 GCTGACGGGGAAAAGAGATG 58.626 55.000 0.00 0.00 0.00 2.90
625 640 1.066143 GCTGACGGGGAAAAGAGATGA 60.066 52.381 0.00 0.00 0.00 2.92
626 641 2.420687 GCTGACGGGGAAAAGAGATGAT 60.421 50.000 0.00 0.00 0.00 2.45
627 642 3.462021 CTGACGGGGAAAAGAGATGATC 58.538 50.000 0.00 0.00 0.00 2.92
628 643 2.837591 TGACGGGGAAAAGAGATGATCA 59.162 45.455 0.00 0.00 0.00 2.92
629 644 3.263170 TGACGGGGAAAAGAGATGATCAA 59.737 43.478 0.00 0.00 0.00 2.57
630 645 3.873952 GACGGGGAAAAGAGATGATCAAG 59.126 47.826 0.00 0.00 0.00 3.02
631 646 3.264450 ACGGGGAAAAGAGATGATCAAGT 59.736 43.478 0.00 0.00 0.00 3.16
632 647 4.469945 ACGGGGAAAAGAGATGATCAAGTA 59.530 41.667 0.00 0.00 0.00 2.24
633 648 5.131142 ACGGGGAAAAGAGATGATCAAGTAT 59.869 40.000 0.00 0.00 0.00 2.12
634 649 5.698545 CGGGGAAAAGAGATGATCAAGTATC 59.301 44.000 0.00 0.00 34.93 2.24
679 694 7.888250 ATTAAATTGGAGATGAACTTCCTCC 57.112 36.000 0.00 0.00 45.07 4.30
683 698 2.894902 GGAGATGAACTTCCTCCGTTC 58.105 52.381 0.00 0.00 40.79 3.95
684 699 2.418884 GGAGATGAACTTCCTCCGTTCC 60.419 54.545 0.00 0.00 39.92 3.62
685 700 2.498078 GAGATGAACTTCCTCCGTTCCT 59.502 50.000 0.00 0.00 39.92 3.36
686 701 3.700038 GAGATGAACTTCCTCCGTTCCTA 59.300 47.826 0.00 0.00 39.92 2.94
687 702 4.094476 AGATGAACTTCCTCCGTTCCTAA 58.906 43.478 0.00 0.00 39.92 2.69
688 703 4.530946 AGATGAACTTCCTCCGTTCCTAAA 59.469 41.667 0.00 0.00 39.92 1.85
689 704 4.903045 TGAACTTCCTCCGTTCCTAAAT 57.097 40.909 0.00 0.00 39.92 1.40
690 705 6.383147 AGATGAACTTCCTCCGTTCCTAAATA 59.617 38.462 0.00 0.00 39.92 1.40
691 706 5.727434 TGAACTTCCTCCGTTCCTAAATAC 58.273 41.667 0.00 0.00 39.92 1.89
692 707 5.246656 TGAACTTCCTCCGTTCCTAAATACA 59.753 40.000 0.00 0.00 39.92 2.29
693 708 5.750352 ACTTCCTCCGTTCCTAAATACAA 57.250 39.130 0.00 0.00 0.00 2.41
694 709 5.731591 ACTTCCTCCGTTCCTAAATACAAG 58.268 41.667 0.00 0.00 0.00 3.16
695 710 5.247792 ACTTCCTCCGTTCCTAAATACAAGT 59.752 40.000 0.00 0.00 0.00 3.16
696 711 5.334724 TCCTCCGTTCCTAAATACAAGTC 57.665 43.478 0.00 0.00 0.00 3.01
697 712 5.021458 TCCTCCGTTCCTAAATACAAGTCT 58.979 41.667 0.00 0.00 0.00 3.24
698 713 5.482878 TCCTCCGTTCCTAAATACAAGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
699 714 6.013984 TCCTCCGTTCCTAAATACAAGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
700 715 6.092259 CCTCCGTTCCTAAATACAAGTCTTTG 59.908 42.308 0.00 0.00 40.24 2.77
728 743 9.656040 AGAGATTACACTATAGACTACATACGG 57.344 37.037 6.78 0.00 0.00 4.02
729 744 9.650539 GAGATTACACTATAGACTACATACGGA 57.349 37.037 6.78 0.00 0.00 4.69
730 745 9.656040 AGATTACACTATAGACTACATACGGAG 57.344 37.037 6.78 0.00 0.00 4.63
731 746 7.664082 TTACACTATAGACTACATACGGAGC 57.336 40.000 6.78 0.00 0.00 4.70
732 747 4.689812 ACACTATAGACTACATACGGAGCG 59.310 45.833 6.78 0.00 0.00 5.03
733 748 4.093115 CACTATAGACTACATACGGAGCGG 59.907 50.000 6.78 0.00 0.00 5.52
734 749 2.916702 TAGACTACATACGGAGCGGA 57.083 50.000 0.00 0.00 0.00 5.54
735 750 2.048444 AGACTACATACGGAGCGGAA 57.952 50.000 0.00 0.00 0.00 4.30
736 751 2.584236 AGACTACATACGGAGCGGAAT 58.416 47.619 0.00 0.00 0.00 3.01
737 752 3.748083 AGACTACATACGGAGCGGAATA 58.252 45.455 0.00 0.00 0.00 1.75
738 753 4.139786 AGACTACATACGGAGCGGAATAA 58.860 43.478 0.00 0.00 0.00 1.40
739 754 4.581824 AGACTACATACGGAGCGGAATAAA 59.418 41.667 0.00 0.00 0.00 1.40
740 755 5.243283 AGACTACATACGGAGCGGAATAAAT 59.757 40.000 0.00 0.00 0.00 1.40
741 756 5.227908 ACTACATACGGAGCGGAATAAATG 58.772 41.667 0.00 0.00 0.00 2.32
742 757 4.330944 ACATACGGAGCGGAATAAATGA 57.669 40.909 0.00 0.00 0.00 2.57
743 758 4.699637 ACATACGGAGCGGAATAAATGAA 58.300 39.130 0.00 0.00 0.00 2.57
744 759 5.305585 ACATACGGAGCGGAATAAATGAAT 58.694 37.500 0.00 0.00 0.00 2.57
745 760 5.408604 ACATACGGAGCGGAATAAATGAATC 59.591 40.000 0.00 0.00 0.00 2.52
746 761 4.073293 ACGGAGCGGAATAAATGAATCT 57.927 40.909 0.00 0.00 0.00 2.40
747 762 5.209818 ACGGAGCGGAATAAATGAATCTA 57.790 39.130 0.00 0.00 0.00 1.98
748 763 4.989168 ACGGAGCGGAATAAATGAATCTAC 59.011 41.667 0.00 0.00 0.00 2.59
749 764 4.988540 CGGAGCGGAATAAATGAATCTACA 59.011 41.667 0.00 0.00 0.00 2.74
750 765 5.107453 CGGAGCGGAATAAATGAATCTACAC 60.107 44.000 0.00 0.00 0.00 2.90
751 766 5.992217 GGAGCGGAATAAATGAATCTACACT 59.008 40.000 0.00 0.00 0.00 3.55
752 767 6.146347 GGAGCGGAATAAATGAATCTACACTC 59.854 42.308 0.00 0.00 0.00 3.51
753 768 6.821388 AGCGGAATAAATGAATCTACACTCT 58.179 36.000 0.00 0.00 0.00 3.24
754 769 7.952671 AGCGGAATAAATGAATCTACACTCTA 58.047 34.615 0.00 0.00 0.00 2.43
755 770 8.421784 AGCGGAATAAATGAATCTACACTCTAA 58.578 33.333 0.00 0.00 0.00 2.10
756 771 9.042008 GCGGAATAAATGAATCTACACTCTAAA 57.958 33.333 0.00 0.00 0.00 1.85
793 808 8.765488 ACATCCATATGTGGTTCATAATGAAA 57.235 30.769 8.51 0.00 44.79 2.69
794 809 9.370930 ACATCCATATGTGGTTCATAATGAAAT 57.629 29.630 8.51 0.00 44.79 2.17
795 810 9.850628 CATCCATATGTGGTTCATAATGAAATC 57.149 33.333 8.51 0.00 46.16 2.17
796 811 9.818270 ATCCATATGTGGTTCATAATGAAATCT 57.182 29.630 8.51 0.00 46.16 2.40
797 812 9.288576 TCCATATGTGGTTCATAATGAAATCTC 57.711 33.333 8.51 0.00 46.16 2.75
798 813 9.293404 CCATATGTGGTTCATAATGAAATCTCT 57.707 33.333 0.00 0.00 41.57 3.10
801 816 7.770801 TGTGGTTCATAATGAAATCTCTACG 57.229 36.000 0.00 0.00 38.22 3.51
802 817 7.552459 TGTGGTTCATAATGAAATCTCTACGA 58.448 34.615 0.00 0.00 38.22 3.43
803 818 8.038351 TGTGGTTCATAATGAAATCTCTACGAA 58.962 33.333 0.00 0.00 38.22 3.85
804 819 8.543774 GTGGTTCATAATGAAATCTCTACGAAG 58.456 37.037 0.00 0.00 38.22 3.79
805 820 8.474831 TGGTTCATAATGAAATCTCTACGAAGA 58.525 33.333 0.00 0.00 38.22 2.87
806 821 9.482627 GGTTCATAATGAAATCTCTACGAAGAT 57.517 33.333 0.00 0.00 38.22 2.40
822 837 9.903682 TCTACGAAGATTTATATTTAGGAACGG 57.096 33.333 0.00 0.00 0.00 4.44
823 838 9.903682 CTACGAAGATTTATATTTAGGAACGGA 57.096 33.333 0.00 0.00 0.00 4.69
824 839 8.813643 ACGAAGATTTATATTTAGGAACGGAG 57.186 34.615 0.00 0.00 0.00 4.63
825 840 8.636213 ACGAAGATTTATATTTAGGAACGGAGA 58.364 33.333 0.00 0.00 0.00 3.71
826 841 9.130312 CGAAGATTTATATTTAGGAACGGAGAG 57.870 37.037 0.00 0.00 0.00 3.20
848 863 7.773149 AGAGAGTATTAGTTTGTGCGTCTTAT 58.227 34.615 0.00 0.00 0.00 1.73
855 870 3.062099 AGTTTGTGCGTCTTATGTATGCG 59.938 43.478 0.00 0.00 0.00 4.73
871 886 5.112686 TGTATGCGTTGTGCTGATGTATTA 58.887 37.500 0.00 0.00 46.63 0.98
917 939 5.110814 ACATAGCAGGCACCAAATAGTTA 57.889 39.130 0.00 0.00 0.00 2.24
1033 1057 3.385384 CAGAGTGCTCTCCGGCCA 61.385 66.667 12.06 0.00 41.26 5.36
1096 1120 1.586154 CCTTGCCACCATCGTTGTCC 61.586 60.000 0.00 0.00 0.00 4.02
1100 1124 2.358125 CACCATCGTTGTCCGCCA 60.358 61.111 0.00 0.00 36.19 5.69
1321 1345 3.530265 CCAACTACGGCAAGGTATACA 57.470 47.619 5.01 0.00 0.00 2.29
1336 1360 6.150396 AGGTATACAAGTAGCTGCTAACTG 57.850 41.667 11.57 13.35 31.64 3.16
1369 1393 4.151689 TCCGAAATAAGTTGACGCTCAAAG 59.848 41.667 2.65 0.00 38.22 2.77
1399 1499 9.585099 GATCAAGATAATGATTAGTAGCTCAGG 57.415 37.037 0.00 0.00 40.08 3.86
1400 1500 8.712228 TCAAGATAATGATTAGTAGCTCAGGA 57.288 34.615 0.00 0.00 0.00 3.86
1401 1501 8.801299 TCAAGATAATGATTAGTAGCTCAGGAG 58.199 37.037 0.00 0.00 0.00 3.69
1539 1658 1.143620 GCAGCAGAGGAAGATCGCT 59.856 57.895 0.00 0.00 32.07 4.93
1624 1743 2.011349 AAGCTCGCGCATATCGTCG 61.011 57.895 8.75 0.00 41.07 5.12
1687 1809 1.635487 ACCTGGCTGGCTCTGATTAAA 59.365 47.619 10.71 0.00 40.22 1.52
1702 1824 6.359804 TCTGATTAAATCCAAGACCATCCTG 58.640 40.000 0.00 0.00 0.00 3.86
1714 1850 3.012502 AGACCATCCTGTGACCTAACCTA 59.987 47.826 0.00 0.00 0.00 3.08
1718 1854 4.504858 CATCCTGTGACCTAACCTAACAC 58.495 47.826 0.00 0.00 0.00 3.32
1925 2113 0.685660 GGAAGGTGTCGAGGTTCCTT 59.314 55.000 9.20 9.20 42.10 3.36
2064 2258 6.415280 CACTGTATGTAATCTAACGTGCTCTC 59.585 42.308 0.00 0.00 0.00 3.20
2090 2291 5.700832 CCTGCATCAACTTGTTGTAAGACTA 59.299 40.000 12.44 0.00 0.00 2.59
2091 2292 6.347725 CCTGCATCAACTTGTTGTAAGACTAC 60.348 42.308 12.44 0.00 0.00 2.73
2092 2293 6.288294 TGCATCAACTTGTTGTAAGACTACT 58.712 36.000 12.44 0.00 0.00 2.57
2094 2295 7.384115 TGCATCAACTTGTTGTAAGACTACTAC 59.616 37.037 12.44 0.00 35.21 2.73
2104 2305 8.418662 TGTTGTAAGACTACTACATCAACTTGT 58.581 33.333 0.00 0.00 38.37 3.16
2105 2306 9.257651 GTTGTAAGACTACTACATCAACTTGTT 57.742 33.333 0.00 0.00 34.89 2.83
2106 2307 8.812147 TGTAAGACTACTACATCAACTTGTTG 57.188 34.615 7.13 7.13 0.00 3.33
2107 2308 8.418662 TGTAAGACTACTACATCAACTTGTTGT 58.581 33.333 12.44 9.81 38.70 3.32
2108 2309 9.903682 GTAAGACTACTACATCAACTTGTTGTA 57.096 33.333 12.44 10.81 36.97 2.41
2110 2311 9.998106 AAGACTACTACATCAACTTGTTGTAAT 57.002 29.630 12.44 6.66 37.37 1.89
2111 2312 9.640963 AGACTACTACATCAACTTGTTGTAATC 57.359 33.333 12.44 8.46 37.37 1.75
2121 2322 5.840940 ACTTGTTGTAATCTAACGTGCTC 57.159 39.130 0.00 0.00 0.00 4.26
2122 2323 5.539048 ACTTGTTGTAATCTAACGTGCTCT 58.461 37.500 0.00 0.00 0.00 4.09
2123 2324 5.634020 ACTTGTTGTAATCTAACGTGCTCTC 59.366 40.000 0.00 0.00 0.00 3.20
2125 2326 4.921515 TGTTGTAATCTAACGTGCTCTCAC 59.078 41.667 0.00 0.00 39.78 3.51
2129 2330 0.243907 TCTAACGTGCTCTCACCTGC 59.756 55.000 0.00 0.00 40.04 4.85
2131 2332 0.608130 TAACGTGCTCTCACCTGCAT 59.392 50.000 0.00 0.00 41.45 3.96
2142 2367 2.862536 CTCACCTGCATCTACGTTGATG 59.137 50.000 28.39 28.39 44.72 3.07
2201 2426 0.179043 TACTGGCAACCAACAGCGAA 60.179 50.000 0.00 0.00 38.25 4.70
2353 2587 2.615227 ATAAGCAAGGAGGCTGCCGG 62.615 60.000 13.96 0.00 45.07 6.13
2505 2739 5.248020 GTGAGTCCATCCATCTAATCCATCT 59.752 44.000 0.00 0.00 0.00 2.90
2532 2816 3.623060 CGACTTGTTGGGATTCCATGTAG 59.377 47.826 4.80 0.00 43.63 2.74
2533 2817 4.589908 GACTTGTTGGGATTCCATGTAGT 58.410 43.478 4.80 0.00 43.63 2.73
2534 2818 5.625886 CGACTTGTTGGGATTCCATGTAGTA 60.626 44.000 4.80 0.00 43.63 1.82
2535 2819 5.497474 ACTTGTTGGGATTCCATGTAGTAC 58.503 41.667 4.80 0.00 43.63 2.73
2548 2832 4.206404 CCATGTAGTACGATTGTAACTGCG 59.794 45.833 0.00 0.00 30.94 5.18
2745 7219 0.179161 CGAAAGATGGCTCGACGAGT 60.179 55.000 24.80 6.45 37.23 4.18
2861 7833 2.510238 ATCTTCGCGGCTGTGCTC 60.510 61.111 6.13 0.00 0.00 4.26
2873 7845 0.321122 CTGTGCTCCTCCGCTTCTTT 60.321 55.000 0.00 0.00 0.00 2.52
2885 7857 1.714794 GCTTCTTTGTGCTCGAGCTA 58.285 50.000 35.27 22.60 42.66 3.32
3007 7979 3.302870 CGTTTGTACCCAAGAAAGACACG 60.303 47.826 0.00 0.00 0.00 4.49
3009 7981 1.154197 GTACCCAAGAAAGACACGCC 58.846 55.000 0.00 0.00 0.00 5.68
3014 7990 1.264288 CCAAGAAAGACACGCCTGAAC 59.736 52.381 0.00 0.00 0.00 3.18
3335 11135 9.063615 GTATTCCGTTATTAAACTGATTCCCAT 57.936 33.333 0.00 0.00 30.21 4.00
3433 11252 8.671921 CATCTAGAGTTGCTTCAACAAATACAT 58.328 33.333 11.63 0.00 45.66 2.29
3436 11255 4.559153 AGTTGCTTCAACAAATACATGGC 58.441 39.130 11.63 0.00 45.66 4.40
3440 11259 4.397730 TGCTTCAACAAATACATGGCGTAT 59.602 37.500 0.00 0.00 42.91 3.06
3524 11344 0.460109 TCCGTCAACATCATGGAGCG 60.460 55.000 0.00 0.00 0.00 5.03
3525 11345 0.460109 CCGTCAACATCATGGAGCGA 60.460 55.000 0.00 0.00 0.00 4.93
3542 11362 0.661552 CGATTGCTTGCTGAGGATGG 59.338 55.000 0.00 0.00 0.00 3.51
3580 11400 2.089980 GCTTCGACCTCTAGTACACCA 58.910 52.381 0.00 0.00 0.00 4.17
3581 11401 2.097791 GCTTCGACCTCTAGTACACCAG 59.902 54.545 0.00 0.00 0.00 4.00
3591 11411 2.327325 AGTACACCAGTGGTCATCCT 57.673 50.000 13.31 3.07 31.02 3.24
3593 11413 1.899814 GTACACCAGTGGTCATCCTGA 59.100 52.381 13.31 0.00 31.02 3.86
3617 11437 0.389948 GATCAGAAGGTTGCCGTCGT 60.390 55.000 0.00 0.00 37.12 4.34
3626 11446 0.598158 GTTGCCGTCGTCCAGTTGTA 60.598 55.000 0.00 0.00 0.00 2.41
3627 11447 0.319083 TTGCCGTCGTCCAGTTGTAT 59.681 50.000 0.00 0.00 0.00 2.29
3642 11462 0.672091 TGTATGTGCGCCATCACGTT 60.672 50.000 13.58 0.00 39.73 3.99
3713 11533 1.597663 GTAGGTGCGACATATGCCAAC 59.402 52.381 1.58 0.56 0.00 3.77
3728 11548 1.762708 CCAACGGGTGGCTTATCATT 58.237 50.000 0.00 0.00 41.72 2.57
3734 11554 1.064017 GGGTGGCTTATCATTGTGGGA 60.064 52.381 0.00 0.00 0.00 4.37
3783 11603 0.673985 CGGGATGAGGCGAAGACATA 59.326 55.000 0.00 0.00 39.87 2.29
3806 11626 2.695314 CTGGCGAATCTTACCCAGC 58.305 57.895 0.00 0.00 38.50 4.85
3827 11647 3.462678 GGGGCTCTCCGTGGAGAC 61.463 72.222 14.57 11.22 45.26 3.36
3838 11658 0.037605 CGTGGAGACAACACCCCTAC 60.038 60.000 0.00 0.00 46.06 3.18
3840 11660 1.002087 GTGGAGACAACACCCCTACTG 59.998 57.143 0.00 0.00 46.06 2.74
3847 11667 0.838122 AACACCCCTACTGCTGCTCT 60.838 55.000 0.00 0.00 0.00 4.09
3850 11670 2.663075 CCCCTACTGCTGCTCTGCA 61.663 63.158 0.00 1.66 41.05 4.41
3865 11685 2.321263 CTGCAGGGTCTCCGCATGAT 62.321 60.000 5.57 0.00 40.05 2.45
3878 11700 3.384467 TCCGCATGATCACTAGATGAACA 59.616 43.478 0.00 2.37 43.53 3.18
3889 11711 6.853720 TCACTAGATGAACAAGTAGCTACAC 58.146 40.000 25.28 11.26 33.02 2.90
3890 11712 5.739630 CACTAGATGAACAAGTAGCTACACG 59.260 44.000 25.28 17.19 0.00 4.49
3911 11733 3.882025 CTCCTTGAGCTGTTCGGC 58.118 61.111 0.00 0.00 0.00 5.54
3912 11734 2.048222 TCCTTGAGCTGTTCGGCG 60.048 61.111 0.00 0.00 37.29 6.46
3913 11735 2.048222 CCTTGAGCTGTTCGGCGA 60.048 61.111 4.99 4.99 37.29 5.54
3914 11736 2.097038 CCTTGAGCTGTTCGGCGAG 61.097 63.158 10.46 0.00 37.29 5.03
3918 11740 2.676822 AGCTGTTCGGCGAGAGGA 60.677 61.111 10.46 0.00 37.29 3.71
3919 11741 2.202676 GCTGTTCGGCGAGAGGAG 60.203 66.667 10.46 5.96 0.00 3.69
3927 11749 1.819905 GGCGAGAGGAGGAAGAAGG 59.180 63.158 0.00 0.00 0.00 3.46
3931 11753 0.539518 GAGAGGAGGAAGAAGGGCAC 59.460 60.000 0.00 0.00 0.00 5.01
3936 11758 2.436824 GGAAGAAGGGCACGGCTC 60.437 66.667 0.00 0.00 0.00 4.70
3944 11766 4.443266 GGCACGGCTCGCTCTCTT 62.443 66.667 0.00 0.00 0.00 2.85
3945 11767 2.883253 GCACGGCTCGCTCTCTTC 60.883 66.667 0.00 0.00 0.00 2.87
3951 11774 1.733526 GCTCGCTCTCTTCTCCTCC 59.266 63.158 0.00 0.00 0.00 4.30
3954 11777 1.142060 CTCGCTCTCTTCTCCTCCCTA 59.858 57.143 0.00 0.00 0.00 3.53
3956 11779 1.885887 CGCTCTCTTCTCCTCCCTATG 59.114 57.143 0.00 0.00 0.00 2.23
3963 11786 2.160721 TCTCCTCCCTATGTGGTGTC 57.839 55.000 0.00 0.00 0.00 3.67
3965 11788 2.856864 TCTCCTCCCTATGTGGTGTCTA 59.143 50.000 0.00 0.00 0.00 2.59
3966 11789 3.271225 TCTCCTCCCTATGTGGTGTCTAA 59.729 47.826 0.00 0.00 0.00 2.10
3968 11791 3.271225 TCCTCCCTATGTGGTGTCTAAGA 59.729 47.826 0.00 0.00 0.00 2.10
3969 11792 3.385111 CCTCCCTATGTGGTGTCTAAGAC 59.615 52.174 0.00 0.00 0.00 3.01
3970 11793 4.282496 CTCCCTATGTGGTGTCTAAGACT 58.718 47.826 0.00 0.00 33.15 3.24
3971 11794 5.446860 CTCCCTATGTGGTGTCTAAGACTA 58.553 45.833 0.00 0.00 33.15 2.59
3972 11795 5.446860 TCCCTATGTGGTGTCTAAGACTAG 58.553 45.833 0.00 0.00 33.15 2.57
3973 11796 4.038162 CCCTATGTGGTGTCTAAGACTAGC 59.962 50.000 0.00 0.00 33.15 3.42
3974 11797 4.645136 CCTATGTGGTGTCTAAGACTAGCA 59.355 45.833 0.00 0.00 33.15 3.49
3975 11798 4.727507 ATGTGGTGTCTAAGACTAGCAG 57.272 45.455 0.00 0.00 33.15 4.24
3976 11799 2.826128 TGTGGTGTCTAAGACTAGCAGG 59.174 50.000 0.00 0.00 33.15 4.85
3977 11800 2.166664 GTGGTGTCTAAGACTAGCAGGG 59.833 54.545 0.00 0.00 33.15 4.45
3978 11801 2.042569 TGGTGTCTAAGACTAGCAGGGA 59.957 50.000 0.00 0.00 33.15 4.20
3979 11802 3.301274 GGTGTCTAAGACTAGCAGGGAT 58.699 50.000 0.00 0.00 33.15 3.85
3980 11803 3.319689 GGTGTCTAAGACTAGCAGGGATC 59.680 52.174 0.00 0.00 33.15 3.36
3981 11804 3.954904 GTGTCTAAGACTAGCAGGGATCA 59.045 47.826 0.00 0.00 33.15 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.630580 CTCCATTGTTTCCGGGGAAAAA 59.369 45.455 14.13 6.71 44.40 1.94
24 25 1.001393 GCTCCATTGTTTCCGGGGA 60.001 57.895 0.00 0.00 0.00 4.81
71 72 2.590092 GCGGGTGTCATAGCCCTT 59.410 61.111 0.00 0.00 44.28 3.95
136 137 0.712979 AGTGGAGGAGGAGATGGTGA 59.287 55.000 0.00 0.00 0.00 4.02
201 202 6.314896 GTCTTCATCATCGTTCCAAAGAGATT 59.685 38.462 0.00 0.00 0.00 2.40
213 214 3.753272 CCTTTGGTTGTCTTCATCATCGT 59.247 43.478 0.00 0.00 0.00 3.73
217 218 5.513094 CCTCTACCTTTGGTTGTCTTCATCA 60.513 44.000 0.00 0.00 37.09 3.07
265 266 2.911509 GTGTGTGTGGCCATGGCA 60.912 61.111 36.56 20.63 44.11 4.92
283 284 2.363018 TGGGCTCCTCAGGACGAG 60.363 66.667 0.00 0.00 41.89 4.18
290 291 1.198713 GATCTTGAGTGGGCTCCTCA 58.801 55.000 1.06 1.06 40.95 3.86
295 296 0.467384 CGATGGATCTTGAGTGGGCT 59.533 55.000 0.00 0.00 0.00 5.19
312 313 4.357947 GAGGCGTGGCTGTGACGA 62.358 66.667 0.00 0.00 39.21 4.20
407 409 2.679287 GTCCGTCTTCCCTCCCGT 60.679 66.667 0.00 0.00 0.00 5.28
416 418 3.382832 CCGCCTCCTGTCCGTCTT 61.383 66.667 0.00 0.00 0.00 3.01
425 427 4.565850 GGATCCCCTCCGCCTCCT 62.566 72.222 0.00 0.00 33.29 3.69
468 481 3.003763 GCCTCCCGTCCACCTCTT 61.004 66.667 0.00 0.00 0.00 2.85
535 550 0.188834 CCCCTCCTATCGTCCTCCTT 59.811 60.000 0.00 0.00 0.00 3.36
553 568 1.834822 CCTCCTCCCGTCCAGATCC 60.835 68.421 0.00 0.00 0.00 3.36
554 569 1.834822 CCCTCCTCCCGTCCAGATC 60.835 68.421 0.00 0.00 0.00 2.75
555 570 2.283809 CCCTCCTCCCGTCCAGAT 59.716 66.667 0.00 0.00 0.00 2.90
556 571 4.075793 CCCCTCCTCCCGTCCAGA 62.076 72.222 0.00 0.00 0.00 3.86
557 572 3.396822 ATCCCCTCCTCCCGTCCAG 62.397 68.421 0.00 0.00 0.00 3.86
558 573 3.364964 ATCCCCTCCTCCCGTCCA 61.365 66.667 0.00 0.00 0.00 4.02
559 574 2.524640 GATCCCCTCCTCCCGTCC 60.525 72.222 0.00 0.00 0.00 4.79
560 575 2.524640 GGATCCCCTCCTCCCGTC 60.525 72.222 0.00 0.00 41.29 4.79
561 576 4.541648 CGGATCCCCTCCTCCCGT 62.542 72.222 6.06 0.00 42.47 5.28
562 577 3.531456 ATCGGATCCCCTCCTCCCG 62.531 68.421 6.06 0.00 42.47 5.14
563 578 1.915769 CATCGGATCCCCTCCTCCC 60.916 68.421 6.06 0.00 42.47 4.30
564 579 0.252467 ATCATCGGATCCCCTCCTCC 60.252 60.000 6.06 0.00 42.47 4.30
565 580 1.190643 GATCATCGGATCCCCTCCTC 58.809 60.000 6.06 0.00 43.44 3.71
566 581 3.390280 GATCATCGGATCCCCTCCT 57.610 57.895 6.06 0.00 43.44 3.69
574 589 2.293677 GACCACACGTAGATCATCGGAT 59.706 50.000 12.64 0.00 36.13 4.18
575 590 1.674441 GACCACACGTAGATCATCGGA 59.326 52.381 12.64 0.00 0.00 4.55
576 591 1.269102 GGACCACACGTAGATCATCGG 60.269 57.143 12.64 5.82 0.00 4.18
577 592 1.676529 AGGACCACACGTAGATCATCG 59.323 52.381 0.00 1.49 0.00 3.84
578 593 4.519350 TGATAGGACCACACGTAGATCATC 59.481 45.833 0.00 0.00 0.00 2.92
579 594 4.470602 TGATAGGACCACACGTAGATCAT 58.529 43.478 0.00 0.00 0.00 2.45
580 595 3.893521 TGATAGGACCACACGTAGATCA 58.106 45.455 0.00 0.00 0.00 2.92
581 596 5.223382 CAATGATAGGACCACACGTAGATC 58.777 45.833 0.00 0.00 0.00 2.75
582 597 4.039245 CCAATGATAGGACCACACGTAGAT 59.961 45.833 0.00 0.00 0.00 1.98
583 598 3.383505 CCAATGATAGGACCACACGTAGA 59.616 47.826 0.00 0.00 0.00 2.59
584 599 3.717707 CCAATGATAGGACCACACGTAG 58.282 50.000 0.00 0.00 0.00 3.51
585 600 2.159014 GCCAATGATAGGACCACACGTA 60.159 50.000 0.00 0.00 0.00 3.57
586 601 1.406887 GCCAATGATAGGACCACACGT 60.407 52.381 0.00 0.00 0.00 4.49
587 602 1.134401 AGCCAATGATAGGACCACACG 60.134 52.381 0.00 0.00 0.00 4.49
588 603 2.092968 TCAGCCAATGATAGGACCACAC 60.093 50.000 0.00 0.00 31.12 3.82
589 604 2.092968 GTCAGCCAATGATAGGACCACA 60.093 50.000 0.00 0.00 40.92 4.17
590 605 2.565841 GTCAGCCAATGATAGGACCAC 58.434 52.381 0.00 0.00 40.92 4.16
591 606 1.138859 CGTCAGCCAATGATAGGACCA 59.861 52.381 0.00 0.00 40.92 4.02
592 607 1.541233 CCGTCAGCCAATGATAGGACC 60.541 57.143 0.00 0.00 40.92 4.46
593 608 1.541233 CCCGTCAGCCAATGATAGGAC 60.541 57.143 4.56 0.00 40.92 3.85
594 609 0.758734 CCCGTCAGCCAATGATAGGA 59.241 55.000 4.56 0.00 40.92 2.94
595 610 0.250467 CCCCGTCAGCCAATGATAGG 60.250 60.000 0.00 0.00 40.92 2.57
596 611 0.758734 TCCCCGTCAGCCAATGATAG 59.241 55.000 0.00 0.00 40.92 2.08
597 612 1.208706 TTCCCCGTCAGCCAATGATA 58.791 50.000 0.00 0.00 40.92 2.15
598 613 0.331278 TTTCCCCGTCAGCCAATGAT 59.669 50.000 0.00 0.00 40.92 2.45
599 614 0.111446 TTTTCCCCGTCAGCCAATGA 59.889 50.000 0.00 0.00 34.79 2.57
600 615 0.527565 CTTTTCCCCGTCAGCCAATG 59.472 55.000 0.00 0.00 0.00 2.82
601 616 0.404040 TCTTTTCCCCGTCAGCCAAT 59.596 50.000 0.00 0.00 0.00 3.16
602 617 0.250727 CTCTTTTCCCCGTCAGCCAA 60.251 55.000 0.00 0.00 0.00 4.52
603 618 1.125093 TCTCTTTTCCCCGTCAGCCA 61.125 55.000 0.00 0.00 0.00 4.75
604 619 0.253327 ATCTCTTTTCCCCGTCAGCC 59.747 55.000 0.00 0.00 0.00 4.85
605 620 1.066143 TCATCTCTTTTCCCCGTCAGC 60.066 52.381 0.00 0.00 0.00 4.26
606 621 3.118629 TGATCATCTCTTTTCCCCGTCAG 60.119 47.826 0.00 0.00 0.00 3.51
607 622 2.837591 TGATCATCTCTTTTCCCCGTCA 59.162 45.455 0.00 0.00 0.00 4.35
608 623 3.543680 TGATCATCTCTTTTCCCCGTC 57.456 47.619 0.00 0.00 0.00 4.79
609 624 3.264450 ACTTGATCATCTCTTTTCCCCGT 59.736 43.478 0.00 0.00 0.00 5.28
610 625 3.878778 ACTTGATCATCTCTTTTCCCCG 58.121 45.455 0.00 0.00 0.00 5.73
611 626 6.595682 TGATACTTGATCATCTCTTTTCCCC 58.404 40.000 0.00 0.00 39.78 4.81
653 668 9.579932 GGAGGAAGTTCATCTCCAATTTAATAT 57.420 33.333 16.45 0.00 44.72 1.28
654 669 7.715249 CGGAGGAAGTTCATCTCCAATTTAATA 59.285 37.037 21.28 0.00 45.40 0.98
655 670 6.543831 CGGAGGAAGTTCATCTCCAATTTAAT 59.456 38.462 21.28 0.00 45.40 1.40
656 671 5.880332 CGGAGGAAGTTCATCTCCAATTTAA 59.120 40.000 21.28 0.00 45.40 1.52
657 672 5.045869 ACGGAGGAAGTTCATCTCCAATTTA 60.046 40.000 21.28 0.00 45.40 1.40
658 673 4.263506 ACGGAGGAAGTTCATCTCCAATTT 60.264 41.667 21.28 6.11 45.40 1.82
659 674 3.264450 ACGGAGGAAGTTCATCTCCAATT 59.736 43.478 21.28 7.93 45.40 2.32
660 675 2.840651 ACGGAGGAAGTTCATCTCCAAT 59.159 45.455 21.28 10.66 45.40 3.16
661 676 2.257207 ACGGAGGAAGTTCATCTCCAA 58.743 47.619 21.28 0.00 45.40 3.53
662 677 1.938585 ACGGAGGAAGTTCATCTCCA 58.061 50.000 21.28 0.00 45.40 3.86
663 678 2.894902 GAACGGAGGAAGTTCATCTCC 58.105 52.381 16.45 15.59 45.21 3.71
669 684 5.727434 TGTATTTAGGAACGGAGGAAGTTC 58.273 41.667 0.00 0.00 45.16 3.01
670 685 5.750352 TGTATTTAGGAACGGAGGAAGTT 57.250 39.130 0.00 0.00 34.07 2.66
671 686 5.247792 ACTTGTATTTAGGAACGGAGGAAGT 59.752 40.000 0.00 0.00 0.00 3.01
672 687 5.731591 ACTTGTATTTAGGAACGGAGGAAG 58.268 41.667 0.00 0.00 0.00 3.46
673 688 5.482878 AGACTTGTATTTAGGAACGGAGGAA 59.517 40.000 0.00 0.00 0.00 3.36
674 689 5.021458 AGACTTGTATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
675 690 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
676 691 6.649557 ACAAAGACTTGTATTTAGGAACGGAG 59.350 38.462 0.00 0.00 44.14 4.63
677 692 6.527423 ACAAAGACTTGTATTTAGGAACGGA 58.473 36.000 0.00 0.00 44.14 4.69
678 693 6.796705 ACAAAGACTTGTATTTAGGAACGG 57.203 37.500 0.00 0.00 44.14 4.44
679 694 8.752766 TCTACAAAGACTTGTATTTAGGAACG 57.247 34.615 0.00 0.00 44.95 3.95
680 695 9.924650 TCTCTACAAAGACTTGTATTTAGGAAC 57.075 33.333 0.00 0.00 44.95 3.62
702 717 9.656040 CCGTATGTAGTCTATAGTGTAATCTCT 57.344 37.037 0.00 0.00 0.00 3.10
703 718 9.650539 TCCGTATGTAGTCTATAGTGTAATCTC 57.349 37.037 0.00 0.00 0.00 2.75
704 719 9.656040 CTCCGTATGTAGTCTATAGTGTAATCT 57.344 37.037 0.00 0.00 0.00 2.40
705 720 8.389603 GCTCCGTATGTAGTCTATAGTGTAATC 58.610 40.741 0.00 0.00 0.00 1.75
706 721 7.064371 CGCTCCGTATGTAGTCTATAGTGTAAT 59.936 40.741 0.00 0.00 0.00 1.89
707 722 6.367149 CGCTCCGTATGTAGTCTATAGTGTAA 59.633 42.308 0.00 0.00 0.00 2.41
708 723 5.866092 CGCTCCGTATGTAGTCTATAGTGTA 59.134 44.000 0.00 0.00 0.00 2.90
709 724 4.689812 CGCTCCGTATGTAGTCTATAGTGT 59.310 45.833 0.00 0.00 0.00 3.55
710 725 4.093115 CCGCTCCGTATGTAGTCTATAGTG 59.907 50.000 0.00 0.00 0.00 2.74
711 726 4.020751 TCCGCTCCGTATGTAGTCTATAGT 60.021 45.833 0.00 0.00 0.00 2.12
712 727 4.502016 TCCGCTCCGTATGTAGTCTATAG 58.498 47.826 0.00 0.00 0.00 1.31
713 728 4.541973 TCCGCTCCGTATGTAGTCTATA 57.458 45.455 0.00 0.00 0.00 1.31
714 729 3.413846 TCCGCTCCGTATGTAGTCTAT 57.586 47.619 0.00 0.00 0.00 1.98
715 730 2.916702 TCCGCTCCGTATGTAGTCTA 57.083 50.000 0.00 0.00 0.00 2.59
716 731 2.048444 TTCCGCTCCGTATGTAGTCT 57.952 50.000 0.00 0.00 0.00 3.24
717 732 4.494350 TTATTCCGCTCCGTATGTAGTC 57.506 45.455 0.00 0.00 0.00 2.59
718 733 4.924305 TTTATTCCGCTCCGTATGTAGT 57.076 40.909 0.00 0.00 0.00 2.73
719 734 5.466819 TCATTTATTCCGCTCCGTATGTAG 58.533 41.667 0.00 0.00 0.00 2.74
720 735 5.456548 TCATTTATTCCGCTCCGTATGTA 57.543 39.130 0.00 0.00 0.00 2.29
721 736 4.330944 TCATTTATTCCGCTCCGTATGT 57.669 40.909 0.00 0.00 0.00 2.29
722 737 5.639506 AGATTCATTTATTCCGCTCCGTATG 59.360 40.000 0.00 0.00 0.00 2.39
723 738 5.794894 AGATTCATTTATTCCGCTCCGTAT 58.205 37.500 0.00 0.00 0.00 3.06
724 739 5.209818 AGATTCATTTATTCCGCTCCGTA 57.790 39.130 0.00 0.00 0.00 4.02
725 740 4.073293 AGATTCATTTATTCCGCTCCGT 57.927 40.909 0.00 0.00 0.00 4.69
726 741 4.988540 TGTAGATTCATTTATTCCGCTCCG 59.011 41.667 0.00 0.00 0.00 4.63
727 742 5.992217 AGTGTAGATTCATTTATTCCGCTCC 59.008 40.000 0.00 0.00 0.00 4.70
728 743 6.926272 AGAGTGTAGATTCATTTATTCCGCTC 59.074 38.462 0.00 0.00 0.00 5.03
729 744 6.821388 AGAGTGTAGATTCATTTATTCCGCT 58.179 36.000 0.00 0.00 0.00 5.52
730 745 8.589335 TTAGAGTGTAGATTCATTTATTCCGC 57.411 34.615 0.00 0.00 0.00 5.54
775 790 9.476202 CGTAGAGATTTCATTATGAACCACATA 57.524 33.333 7.19 0.00 35.89 2.29
776 791 8.204160 TCGTAGAGATTTCATTATGAACCACAT 58.796 33.333 7.19 0.00 35.89 3.21
777 792 7.552459 TCGTAGAGATTTCATTATGAACCACA 58.448 34.615 7.19 0.00 35.89 4.17
778 793 8.420374 TTCGTAGAGATTTCATTATGAACCAC 57.580 34.615 7.19 2.67 34.80 4.16
779 794 8.474831 TCTTCGTAGAGATTTCATTATGAACCA 58.525 33.333 7.19 0.00 34.80 3.67
780 795 8.873215 TCTTCGTAGAGATTTCATTATGAACC 57.127 34.615 7.19 3.10 34.80 3.62
796 811 9.903682 CCGTTCCTAAATATAAATCTTCGTAGA 57.096 33.333 0.00 0.00 34.21 2.59
797 812 9.903682 TCCGTTCCTAAATATAAATCTTCGTAG 57.096 33.333 0.00 0.00 0.00 3.51
798 813 9.903682 CTCCGTTCCTAAATATAAATCTTCGTA 57.096 33.333 0.00 0.00 0.00 3.43
799 814 8.636213 TCTCCGTTCCTAAATATAAATCTTCGT 58.364 33.333 0.00 0.00 0.00 3.85
800 815 9.130312 CTCTCCGTTCCTAAATATAAATCTTCG 57.870 37.037 0.00 0.00 0.00 3.79
803 818 9.369672 ACTCTCTCCGTTCCTAAATATAAATCT 57.630 33.333 0.00 0.00 0.00 2.40
809 824 9.810870 ACTAATACTCTCTCCGTTCCTAAATAT 57.189 33.333 0.00 0.00 0.00 1.28
810 825 9.638176 AACTAATACTCTCTCCGTTCCTAAATA 57.362 33.333 0.00 0.00 0.00 1.40
811 826 8.536340 AACTAATACTCTCTCCGTTCCTAAAT 57.464 34.615 0.00 0.00 0.00 1.40
812 827 7.951347 AACTAATACTCTCTCCGTTCCTAAA 57.049 36.000 0.00 0.00 0.00 1.85
813 828 7.395489 ACAAACTAATACTCTCTCCGTTCCTAA 59.605 37.037 0.00 0.00 0.00 2.69
814 829 6.888632 ACAAACTAATACTCTCTCCGTTCCTA 59.111 38.462 0.00 0.00 0.00 2.94
815 830 5.715753 ACAAACTAATACTCTCTCCGTTCCT 59.284 40.000 0.00 0.00 0.00 3.36
816 831 5.805994 CACAAACTAATACTCTCTCCGTTCC 59.194 44.000 0.00 0.00 0.00 3.62
817 832 5.288952 GCACAAACTAATACTCTCTCCGTTC 59.711 44.000 0.00 0.00 0.00 3.95
818 833 5.169295 GCACAAACTAATACTCTCTCCGTT 58.831 41.667 0.00 0.00 0.00 4.44
819 834 4.674623 CGCACAAACTAATACTCTCTCCGT 60.675 45.833 0.00 0.00 0.00 4.69
820 835 3.791887 CGCACAAACTAATACTCTCTCCG 59.208 47.826 0.00 0.00 0.00 4.63
821 836 4.745649 ACGCACAAACTAATACTCTCTCC 58.254 43.478 0.00 0.00 0.00 3.71
822 837 5.642686 AGACGCACAAACTAATACTCTCTC 58.357 41.667 0.00 0.00 0.00 3.20
823 838 5.646577 AGACGCACAAACTAATACTCTCT 57.353 39.130 0.00 0.00 0.00 3.10
824 839 7.488471 ACATAAGACGCACAAACTAATACTCTC 59.512 37.037 0.00 0.00 0.00 3.20
825 840 7.321153 ACATAAGACGCACAAACTAATACTCT 58.679 34.615 0.00 0.00 0.00 3.24
826 841 7.521509 ACATAAGACGCACAAACTAATACTC 57.478 36.000 0.00 0.00 0.00 2.59
827 842 9.031360 CATACATAAGACGCACAAACTAATACT 57.969 33.333 0.00 0.00 0.00 2.12
831 846 5.220322 CGCATACATAAGACGCACAAACTAA 60.220 40.000 0.00 0.00 0.00 2.24
848 863 1.807139 ACATCAGCACAACGCATACA 58.193 45.000 0.00 0.00 46.13 2.29
871 886 9.461312 TGTTCCATTTCAGCATTAGTTAGTAAT 57.539 29.630 0.00 0.00 0.00 1.89
889 909 1.005805 TGGTGCCTGCTATGTTCCATT 59.994 47.619 0.00 0.00 0.00 3.16
898 918 5.105917 GCTTTTAACTATTTGGTGCCTGCTA 60.106 40.000 0.00 0.00 0.00 3.49
1336 1360 0.462789 TTATTTCGGACGGAGGGAGC 59.537 55.000 0.00 0.00 0.00 4.70
1396 1496 2.762887 TCAGCAAGTATCCTGACTCCTG 59.237 50.000 0.00 0.00 33.44 3.86
1397 1497 3.107402 TCAGCAAGTATCCTGACTCCT 57.893 47.619 0.00 0.00 33.44 3.69
1539 1658 2.191802 CTCGTCGAGAAGTCGTAGCTA 58.808 52.381 17.52 0.00 46.85 3.32
1687 1809 1.561542 GGTCACAGGATGGTCTTGGAT 59.438 52.381 0.00 0.00 43.62 3.41
1702 1824 2.696506 GGCAGTGTTAGGTTAGGTCAC 58.303 52.381 0.00 0.00 0.00 3.67
1714 1850 7.611770 ACATATATACACATATCGGCAGTGTT 58.388 34.615 2.59 0.00 43.40 3.32
1718 1854 8.932945 AGAAACATATATACACATATCGGCAG 57.067 34.615 0.00 0.00 0.00 4.85
2038 2232 5.067021 GCACGTTAGATTACATACAGTGC 57.933 43.478 1.03 1.03 44.01 4.40
2064 2258 4.275689 TCTTACAACAAGTTGATGCAGGTG 59.724 41.667 18.90 0.00 42.93 4.00
2090 2291 8.922676 CGTTAGATTACAACAAGTTGATGTAGT 58.077 33.333 20.90 19.19 42.93 2.73
2091 2292 8.922676 ACGTTAGATTACAACAAGTTGATGTAG 58.077 33.333 20.90 12.82 42.93 2.74
2092 2293 8.705134 CACGTTAGATTACAACAAGTTGATGTA 58.295 33.333 18.85 18.85 42.93 2.29
2094 2295 6.519761 GCACGTTAGATTACAACAAGTTGATG 59.480 38.462 18.90 10.94 42.93 3.07
2104 2305 4.219944 AGGTGAGAGCACGTTAGATTACAA 59.780 41.667 0.00 0.00 46.09 2.41
2105 2306 3.762288 AGGTGAGAGCACGTTAGATTACA 59.238 43.478 0.00 0.00 46.09 2.41
2106 2307 4.106197 CAGGTGAGAGCACGTTAGATTAC 58.894 47.826 0.00 0.00 46.09 1.89
2107 2308 3.428999 GCAGGTGAGAGCACGTTAGATTA 60.429 47.826 0.00 0.00 46.09 1.75
2108 2309 2.675317 GCAGGTGAGAGCACGTTAGATT 60.675 50.000 0.00 0.00 46.09 2.40
2109 2310 1.134965 GCAGGTGAGAGCACGTTAGAT 60.135 52.381 0.00 0.00 46.09 1.98
2110 2311 0.243907 GCAGGTGAGAGCACGTTAGA 59.756 55.000 0.00 0.00 46.09 2.10
2111 2312 0.038251 TGCAGGTGAGAGCACGTTAG 60.038 55.000 0.00 0.00 46.09 2.34
2114 2315 1.079543 GATGCAGGTGAGAGCACGT 60.080 57.895 0.00 0.00 46.09 4.49
2115 2316 0.457443 TAGATGCAGGTGAGAGCACG 59.543 55.000 0.00 0.00 46.09 5.34
2121 2322 2.654749 TCAACGTAGATGCAGGTGAG 57.345 50.000 0.00 0.00 0.00 3.51
2122 2323 2.892374 CATCAACGTAGATGCAGGTGA 58.108 47.619 0.00 0.00 38.98 4.02
2129 2330 3.308053 CCTGTCAAGCATCAACGTAGATG 59.692 47.826 0.00 0.00 46.36 2.90
2131 2332 2.353704 CCCTGTCAAGCATCAACGTAGA 60.354 50.000 0.00 0.00 0.00 2.59
2142 2367 1.376037 CCTTCGACCCCTGTCAAGC 60.376 63.158 0.00 0.00 41.85 4.01
2201 2426 1.364269 TGTAATCCACCTTCCCGGTT 58.636 50.000 0.00 0.00 46.37 4.44
2363 2597 4.470170 TCGATGGACGACGTGGCG 62.470 66.667 4.58 3.58 46.45 5.69
2456 2690 1.116308 GGAGAGAAGGGTACAGCCTC 58.884 60.000 0.00 0.00 37.43 4.70
2505 2739 2.289819 GGAATCCCAACAAGTCGTGGTA 60.290 50.000 0.00 0.00 0.00 3.25
2532 2816 3.486108 CAGATCCGCAGTTACAATCGTAC 59.514 47.826 0.00 0.00 0.00 3.67
2533 2817 3.379057 TCAGATCCGCAGTTACAATCGTA 59.621 43.478 0.00 0.00 0.00 3.43
2534 2818 2.165641 TCAGATCCGCAGTTACAATCGT 59.834 45.455 0.00 0.00 0.00 3.73
2535 2819 2.791560 CTCAGATCCGCAGTTACAATCG 59.208 50.000 0.00 0.00 0.00 3.34
2548 2832 8.674263 AAAAACAGATATCATCACTCAGATCC 57.326 34.615 5.32 0.00 33.72 3.36
2582 7052 4.985538 AGCACTCCTTGTTATCCTGAAAA 58.014 39.130 0.00 0.00 0.00 2.29
2831 7803 2.287849 CGCGAAGATCTTCATCTGCCTA 60.288 50.000 29.93 0.00 38.55 3.93
2861 7833 1.630244 CGAGCACAAAGAAGCGGAGG 61.630 60.000 0.00 0.00 35.48 4.30
2873 7845 0.887933 TGTCATGTAGCTCGAGCACA 59.112 50.000 36.87 33.30 45.16 4.57
2885 7857 1.014044 CGCTGGCGTACTTGTCATGT 61.014 55.000 6.83 0.00 34.35 3.21
3007 7979 2.030185 TCAGTACTTGAGACGTTCAGGC 60.030 50.000 0.00 0.00 36.41 4.85
3009 7981 3.982058 GGTTCAGTACTTGAGACGTTCAG 59.018 47.826 0.00 0.00 37.07 3.02
3014 7990 5.373981 ACTAAGGTTCAGTACTTGAGACG 57.626 43.478 0.00 0.00 37.07 4.18
3433 11252 9.224267 CCTAGTCTTAGTAATTAGTATACGCCA 57.776 37.037 0.83 0.00 0.00 5.69
3440 11259 9.235291 AGAGGTCCCTAGTCTTAGTAATTAGTA 57.765 37.037 0.00 0.00 0.00 1.82
3508 11328 2.540361 GCAATCGCTCCATGATGTTGAC 60.540 50.000 0.00 0.00 34.30 3.18
3524 11344 0.384669 GCCATCCTCAGCAAGCAATC 59.615 55.000 0.00 0.00 0.00 2.67
3525 11345 0.323999 TGCCATCCTCAGCAAGCAAT 60.324 50.000 0.00 0.00 35.69 3.56
3542 11362 0.237498 GCCGACCACTTTGTACTTGC 59.763 55.000 0.00 0.00 0.00 4.01
3571 11391 3.096852 CAGGATGACCACTGGTGTACTA 58.903 50.000 5.10 0.00 39.69 1.82
3580 11400 4.099633 TGATCTTTCTCAGGATGACCACT 58.900 43.478 0.00 0.00 42.56 4.00
3581 11401 4.161189 TCTGATCTTTCTCAGGATGACCAC 59.839 45.833 0.00 0.00 42.56 4.16
3591 11411 3.679389 GGCAACCTTCTGATCTTTCTCA 58.321 45.455 0.00 0.00 0.00 3.27
3593 11413 2.039084 ACGGCAACCTTCTGATCTTTCT 59.961 45.455 0.00 0.00 0.00 2.52
3611 11431 1.346365 CACATACAACTGGACGACGG 58.654 55.000 0.00 0.00 0.00 4.79
3617 11437 0.035534 ATGGCGCACATACAACTGGA 60.036 50.000 10.83 0.00 38.26 3.86
3626 11446 1.361668 GAGAACGTGATGGCGCACAT 61.362 55.000 10.83 10.68 44.18 3.21
3627 11447 2.027073 GAGAACGTGATGGCGCACA 61.027 57.895 10.83 5.20 38.69 4.57
3642 11462 1.140452 AGGCCGTACTGATAGACGAGA 59.860 52.381 0.00 0.00 41.60 4.04
3675 11495 2.512286 CACCCGACATGCTCGCAT 60.512 61.111 10.87 0.00 41.46 4.73
3713 11533 1.024271 CCACAATGATAAGCCACCCG 58.976 55.000 0.00 0.00 0.00 5.28
3728 11548 0.830444 ACGTCTTACTGGCTCCCACA 60.830 55.000 0.00 0.00 0.00 4.17
3734 11554 2.572284 GGCGACGTCTTACTGGCT 59.428 61.111 14.70 0.00 0.00 4.75
3783 11603 0.739813 GGTAAGATTCGCCAGCGTGT 60.740 55.000 12.32 1.73 40.74 4.49
3789 11609 0.618458 AAGCTGGGTAAGATTCGCCA 59.382 50.000 0.00 0.00 23.58 5.69
3827 11647 0.674895 GAGCAGCAGTAGGGGTGTTG 60.675 60.000 0.00 0.00 38.49 3.33
3847 11667 2.315781 GATCATGCGGAGACCCTGCA 62.316 60.000 0.00 0.00 42.72 4.41
3850 11670 0.689080 AGTGATCATGCGGAGACCCT 60.689 55.000 0.00 0.00 0.00 4.34
3865 11685 6.403309 CGTGTAGCTACTTGTTCATCTAGTGA 60.403 42.308 23.84 0.00 34.37 3.41
3878 11700 2.873133 GGAGCATCGTGTAGCTACTT 57.127 50.000 23.84 4.63 42.04 2.24
3907 11729 1.001269 TTCTTCCTCCTCTCGCCGA 60.001 57.895 0.00 0.00 0.00 5.54
3908 11730 1.435515 CTTCTTCCTCCTCTCGCCG 59.564 63.158 0.00 0.00 0.00 6.46
3911 11733 0.972983 TGCCCTTCTTCCTCCTCTCG 60.973 60.000 0.00 0.00 0.00 4.04
3912 11734 0.539518 GTGCCCTTCTTCCTCCTCTC 59.460 60.000 0.00 0.00 0.00 3.20
3913 11735 1.261238 CGTGCCCTTCTTCCTCCTCT 61.261 60.000 0.00 0.00 0.00 3.69
3914 11736 1.219393 CGTGCCCTTCTTCCTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
3918 11740 2.930562 AGCCGTGCCCTTCTTCCT 60.931 61.111 0.00 0.00 0.00 3.36
3919 11741 2.436824 GAGCCGTGCCCTTCTTCC 60.437 66.667 0.00 0.00 0.00 3.46
3927 11749 4.443266 AAGAGAGCGAGCCGTGCC 62.443 66.667 0.00 0.00 0.00 5.01
3931 11753 2.058829 GAGGAGAAGAGAGCGAGCCG 62.059 65.000 0.00 0.00 0.00 5.52
3936 11758 1.885887 CATAGGGAGGAGAAGAGAGCG 59.114 57.143 0.00 0.00 0.00 5.03
3942 11764 2.432510 GACACCACATAGGGAGGAGAAG 59.567 54.545 0.00 0.00 43.89 2.85
3943 11765 2.044492 AGACACCACATAGGGAGGAGAA 59.956 50.000 0.00 0.00 43.89 2.87
3944 11766 1.646447 AGACACCACATAGGGAGGAGA 59.354 52.381 0.00 0.00 43.89 3.71
3945 11767 2.166907 AGACACCACATAGGGAGGAG 57.833 55.000 0.00 0.00 43.89 3.69
3951 11774 4.645136 TGCTAGTCTTAGACACCACATAGG 59.355 45.833 15.23 0.00 45.67 2.57
3954 11777 3.449018 CCTGCTAGTCTTAGACACCACAT 59.551 47.826 15.23 0.00 34.60 3.21
3956 11779 2.166664 CCCTGCTAGTCTTAGACACCAC 59.833 54.545 15.23 1.84 34.60 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.