Multiple sequence alignment - TraesCS3A01G340900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G340900 chr3A 100.000 2834 0 0 1 2834 587967630 587964797 0.000000e+00 5234.0
1 TraesCS3A01G340900 chr3A 87.927 1317 102 36 927 2212 587906531 587905241 0.000000e+00 1498.0
2 TraesCS3A01G340900 chr3A 84.622 1086 89 50 942 1996 587884955 587883917 0.000000e+00 1009.0
3 TraesCS3A01G340900 chr3A 89.308 159 13 2 2566 2724 587903631 587903477 2.230000e-46 196.0
4 TraesCS3A01G340900 chr3A 96.364 110 3 1 2725 2834 587916832 587916724 2.240000e-41 180.0
5 TraesCS3A01G340900 chr3A 84.404 109 14 3 2725 2832 577955835 577955941 1.390000e-18 104.0
6 TraesCS3A01G340900 chr3D 93.750 1392 64 16 828 2205 446192083 446190701 0.000000e+00 2067.0
7 TraesCS3A01G340900 chr3D 88.681 1228 93 28 1053 2259 446110191 446108989 0.000000e+00 1456.0
8 TraesCS3A01G340900 chr3D 85.141 1097 95 36 930 1996 446075809 446074751 0.000000e+00 1061.0
9 TraesCS3A01G340900 chr3D 92.915 494 25 3 1 484 446192791 446192298 0.000000e+00 710.0
10 TraesCS3A01G340900 chr3D 85.535 159 19 1 2566 2724 446190184 446190030 2.260000e-36 163.0
11 TraesCS3A01G340900 chr3D 90.517 116 11 0 2427 2542 446190283 446190168 1.360000e-33 154.0
12 TraesCS3A01G340900 chr3D 89.552 67 6 1 944 1010 446110273 446110208 1.810000e-12 84.2
13 TraesCS3A01G340900 chr3B 89.605 1520 111 25 756 2259 585139431 585137943 0.000000e+00 1888.0
14 TraesCS3A01G340900 chr3B 89.991 1139 86 18 1131 2259 585023495 585022375 0.000000e+00 1447.0
15 TraesCS3A01G340900 chr3B 84.743 1088 105 36 942 1996 584985430 584984371 0.000000e+00 1033.0
16 TraesCS3A01G340900 chr3B 93.814 485 29 1 1 484 585140126 585139642 0.000000e+00 728.0
17 TraesCS3A01G340900 chr3B 89.362 141 13 2 2402 2541 585021964 585021825 2.900000e-40 176.0
18 TraesCS3A01G340900 chr3B 93.162 117 8 0 2270 2386 585137785 585137669 3.750000e-39 172.0
19 TraesCS3A01G340900 chr3B 89.051 137 15 0 2406 2542 585137571 585137435 1.350000e-38 171.0
20 TraesCS3A01G340900 chr1A 95.413 109 4 1 2725 2833 300784165 300784058 3.750000e-39 172.0
21 TraesCS3A01G340900 chr1A 94.595 111 5 1 2724 2834 300815453 300815344 1.350000e-38 171.0
22 TraesCS3A01G340900 chr1A 84.685 111 12 5 2725 2834 550293628 550293522 3.860000e-19 106.0
23 TraesCS3A01G340900 chr7A 88.298 94 9 2 2725 2817 443499384 443499292 8.300000e-21 111.0
24 TraesCS3A01G340900 chr7B 84.071 113 15 3 2721 2832 439582389 439582279 3.860000e-19 106.0
25 TraesCS3A01G340900 chrUn 84.404 109 14 3 2725 2832 302412261 302412367 1.390000e-18 104.0
26 TraesCS3A01G340900 chr6B 83.929 112 15 3 2722 2832 240320044 240319935 1.390000e-18 104.0
27 TraesCS3A01G340900 chr4D 84.091 88 14 0 1305 1392 102534314 102534227 5.030000e-13 86.1
28 TraesCS3A01G340900 chr5B 92.157 51 2 1 596 644 557294856 557294806 1.410000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G340900 chr3A 587964797 587967630 2833 True 5234.00 5234 100.00000 1 2834 1 chr3A.!!$R3 2833
1 TraesCS3A01G340900 chr3A 587883917 587884955 1038 True 1009.00 1009 84.62200 942 1996 1 chr3A.!!$R1 1054
2 TraesCS3A01G340900 chr3A 587903477 587906531 3054 True 847.00 1498 88.61750 927 2724 2 chr3A.!!$R4 1797
3 TraesCS3A01G340900 chr3D 446074751 446075809 1058 True 1061.00 1061 85.14100 930 1996 1 chr3D.!!$R1 1066
4 TraesCS3A01G340900 chr3D 446190030 446192791 2761 True 773.50 2067 90.67925 1 2724 4 chr3D.!!$R3 2723
5 TraesCS3A01G340900 chr3D 446108989 446110273 1284 True 770.10 1456 89.11650 944 2259 2 chr3D.!!$R2 1315
6 TraesCS3A01G340900 chr3B 584984371 584985430 1059 True 1033.00 1033 84.74300 942 1996 1 chr3B.!!$R1 1054
7 TraesCS3A01G340900 chr3B 585021825 585023495 1670 True 811.50 1447 89.67650 1131 2541 2 chr3B.!!$R2 1410
8 TraesCS3A01G340900 chr3B 585137435 585140126 2691 True 739.75 1888 91.40800 1 2542 4 chr3B.!!$R3 2541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 723 0.037232 CGGCCGTCCTTTCTTCTTCT 60.037 55.0 19.5 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2601 4118 1.072266 AAGGGTTGCACCACCTATCA 58.928 50.0 7.49 0.0 41.02 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 92 4.501071 TCGTGACCATCTAAAGCTAAACC 58.499 43.478 0.00 0.00 0.00 3.27
91 102 8.398665 CCATCTAAAGCTAAACCACTGATTAAC 58.601 37.037 0.00 0.00 0.00 2.01
135 146 1.929714 GCGCGCATGCTTCGTTAAG 60.930 57.895 29.10 5.95 39.65 1.85
166 177 1.679032 GGCTGCTCCCGTTGATTAACT 60.679 52.381 0.00 0.00 34.60 2.24
249 260 3.124921 CGCCCGTCCACATGAACC 61.125 66.667 0.00 0.00 0.00 3.62
309 320 1.308783 GCTAGCACACCCAAGGCTTC 61.309 60.000 10.63 0.00 39.01 3.86
353 365 2.358737 CCCTGACTTCGTGGTGGC 60.359 66.667 0.00 0.00 0.00 5.01
421 433 2.735857 GGGTAGCGCGTCAACGTT 60.736 61.111 8.43 0.00 42.22 3.99
424 436 1.129209 GTAGCGCGTCAACGTTTCC 59.871 57.895 8.43 0.00 42.22 3.13
504 538 1.134936 TGCGAGCTAAATCTGGCGTTA 60.135 47.619 0.00 0.00 40.12 3.18
505 539 2.135933 GCGAGCTAAATCTGGCGTTAT 58.864 47.619 0.00 0.00 33.44 1.89
509 543 4.318121 CGAGCTAAATCTGGCGTTATTGAC 60.318 45.833 0.00 0.00 33.44 3.18
527 561 9.704098 GTTATTGACGGAAGAAAATCATTACTC 57.296 33.333 0.00 0.00 0.00 2.59
528 562 6.737254 TTGACGGAAGAAAATCATTACTCC 57.263 37.500 0.00 0.00 0.00 3.85
529 563 6.049955 TGACGGAAGAAAATCATTACTCCT 57.950 37.500 0.00 0.00 0.00 3.69
530 564 7.177832 TGACGGAAGAAAATCATTACTCCTA 57.822 36.000 0.00 0.00 0.00 2.94
545 579 2.291930 ACTCCTACTCCACTTCTCCCAG 60.292 54.545 0.00 0.00 0.00 4.45
559 604 0.257328 TCCCAGTGAAAACTGCCACA 59.743 50.000 0.22 0.00 36.46 4.17
572 617 4.445452 ACTGCCACATTAGATTGCAAAG 57.555 40.909 1.71 0.00 0.00 2.77
574 619 4.082571 ACTGCCACATTAGATTGCAAAGTC 60.083 41.667 1.71 0.00 0.00 3.01
578 623 6.152492 TGCCACATTAGATTGCAAAGTCAATA 59.848 34.615 1.71 0.00 36.85 1.90
579 624 7.147863 TGCCACATTAGATTGCAAAGTCAATAT 60.148 33.333 1.71 0.00 36.85 1.28
580 625 8.352201 GCCACATTAGATTGCAAAGTCAATATA 58.648 33.333 1.71 0.00 36.85 0.86
590 635 8.477984 TTGCAAAGTCAATATAAAAATCAGGC 57.522 30.769 0.00 0.00 0.00 4.85
592 637 7.760794 TGCAAAGTCAATATAAAAATCAGGCTG 59.239 33.333 8.58 8.58 0.00 4.85
593 638 7.761249 GCAAAGTCAATATAAAAATCAGGCTGT 59.239 33.333 15.27 0.00 0.00 4.40
594 639 9.079833 CAAAGTCAATATAAAAATCAGGCTGTG 57.920 33.333 15.27 1.10 0.00 3.66
597 642 7.394359 AGTCAATATAAAAATCAGGCTGTGTGT 59.606 33.333 15.27 0.00 0.00 3.72
598 643 8.673711 GTCAATATAAAAATCAGGCTGTGTGTA 58.326 33.333 15.27 1.04 0.00 2.90
599 644 9.237187 TCAATATAAAAATCAGGCTGTGTGTAA 57.763 29.630 15.27 0.00 0.00 2.41
600 645 9.507280 CAATATAAAAATCAGGCTGTGTGTAAG 57.493 33.333 15.27 0.00 0.00 2.34
602 647 5.438761 AAAAATCAGGCTGTGTGTAAGTC 57.561 39.130 15.27 0.00 0.00 3.01
604 649 0.319555 TCAGGCTGTGTGTAAGTCGC 60.320 55.000 15.27 0.00 0.00 5.19
605 650 1.004918 AGGCTGTGTGTAAGTCGCC 60.005 57.895 0.00 0.00 37.80 5.54
607 652 0.245539 GGCTGTGTGTAAGTCGCCTA 59.754 55.000 0.00 0.00 34.80 3.93
611 656 3.249080 GCTGTGTGTAAGTCGCCTAAAAA 59.751 43.478 0.00 0.00 0.00 1.94
612 657 4.083484 GCTGTGTGTAAGTCGCCTAAAAAT 60.083 41.667 0.00 0.00 0.00 1.82
613 658 5.562113 GCTGTGTGTAAGTCGCCTAAAAATT 60.562 40.000 0.00 0.00 0.00 1.82
614 659 6.380095 TGTGTGTAAGTCGCCTAAAAATTT 57.620 33.333 0.00 0.00 0.00 1.82
616 661 8.101654 TGTGTGTAAGTCGCCTAAAAATTTAT 57.898 30.769 0.00 0.00 0.00 1.40
617 662 8.569641 TGTGTGTAAGTCGCCTAAAAATTTATT 58.430 29.630 0.00 0.00 0.00 1.40
618 663 9.401873 GTGTGTAAGTCGCCTAAAAATTTATTT 57.598 29.630 0.00 0.00 0.00 1.40
619 664 9.968870 TGTGTAAGTCGCCTAAAAATTTATTTT 57.031 25.926 0.00 0.00 41.40 1.82
621 666 9.413048 TGTAAGTCGCCTAAAAATTTATTTTGG 57.587 29.630 1.49 0.00 39.70 3.28
622 667 7.899178 AAGTCGCCTAAAAATTTATTTTGGG 57.101 32.000 10.60 10.60 39.70 4.12
623 668 6.999950 AGTCGCCTAAAAATTTATTTTGGGT 58.000 32.000 14.77 0.00 39.70 4.51
624 669 8.124808 AGTCGCCTAAAAATTTATTTTGGGTA 57.875 30.769 14.77 4.39 39.70 3.69
625 670 8.586744 AGTCGCCTAAAAATTTATTTTGGGTAA 58.413 29.630 14.77 4.14 39.70 2.85
626 671 8.865978 GTCGCCTAAAAATTTATTTTGGGTAAG 58.134 33.333 14.77 8.82 39.70 2.34
627 672 8.586744 TCGCCTAAAAATTTATTTTGGGTAAGT 58.413 29.630 14.77 0.00 39.70 2.24
639 684 4.344359 TTGGGTAAGTTGATTTTTGGGC 57.656 40.909 0.00 0.00 0.00 5.36
640 685 2.635427 TGGGTAAGTTGATTTTTGGGCC 59.365 45.455 0.00 0.00 0.00 5.80
641 686 2.635427 GGGTAAGTTGATTTTTGGGCCA 59.365 45.455 0.00 0.00 0.00 5.36
642 687 3.263170 GGGTAAGTTGATTTTTGGGCCAT 59.737 43.478 7.26 0.00 0.00 4.40
643 688 4.263287 GGGTAAGTTGATTTTTGGGCCATT 60.263 41.667 7.26 0.00 0.00 3.16
644 689 4.694982 GGTAAGTTGATTTTTGGGCCATTG 59.305 41.667 7.26 0.00 0.00 2.82
646 691 2.978278 AGTTGATTTTTGGGCCATTGGA 59.022 40.909 7.26 0.00 0.00 3.53
650 695 5.768980 TGATTTTTGGGCCATTGGATTAA 57.231 34.783 7.26 0.00 0.00 1.40
653 698 5.832539 TTTTTGGGCCATTGGATTAAAGA 57.167 34.783 7.26 0.00 0.00 2.52
654 699 6.385766 TTTTTGGGCCATTGGATTAAAGAT 57.614 33.333 7.26 0.00 0.00 2.40
655 700 5.612725 TTTGGGCCATTGGATTAAAGATC 57.387 39.130 7.26 0.00 0.00 2.75
656 701 3.575805 TGGGCCATTGGATTAAAGATCC 58.424 45.455 0.00 0.00 38.66 3.36
663 708 2.650322 TGGATTAAAGATCCAACGGCC 58.350 47.619 5.31 0.00 44.54 6.13
664 709 1.602377 GGATTAAAGATCCAACGGCCG 59.398 52.381 26.86 26.86 38.09 6.13
665 710 2.285977 GATTAAAGATCCAACGGCCGT 58.714 47.619 28.70 28.70 0.00 5.68
666 711 1.729284 TTAAAGATCCAACGGCCGTC 58.271 50.000 34.29 19.15 0.00 4.79
667 712 0.108041 TAAAGATCCAACGGCCGTCC 60.108 55.000 34.29 17.75 0.00 4.79
668 713 1.838073 AAAGATCCAACGGCCGTCCT 61.838 55.000 34.29 15.31 0.00 3.85
669 714 1.838073 AAGATCCAACGGCCGTCCTT 61.838 55.000 34.29 23.89 0.00 3.36
670 715 1.376812 GATCCAACGGCCGTCCTTT 60.377 57.895 34.29 17.43 0.00 3.11
671 716 1.366854 GATCCAACGGCCGTCCTTTC 61.367 60.000 34.29 21.68 0.00 2.62
672 717 1.838073 ATCCAACGGCCGTCCTTTCT 61.838 55.000 34.29 12.54 0.00 2.52
673 718 1.599797 CCAACGGCCGTCCTTTCTT 60.600 57.895 34.29 11.63 0.00 2.52
674 719 1.574702 CCAACGGCCGTCCTTTCTTC 61.575 60.000 34.29 0.00 0.00 2.87
675 720 0.602905 CAACGGCCGTCCTTTCTTCT 60.603 55.000 34.29 9.83 0.00 2.85
676 721 0.108019 AACGGCCGTCCTTTCTTCTT 59.892 50.000 34.29 8.92 0.00 2.52
677 722 0.320508 ACGGCCGTCCTTTCTTCTTC 60.321 55.000 28.70 0.00 0.00 2.87
678 723 0.037232 CGGCCGTCCTTTCTTCTTCT 60.037 55.000 19.50 0.00 0.00 2.85
679 724 1.608283 CGGCCGTCCTTTCTTCTTCTT 60.608 52.381 19.50 0.00 0.00 2.52
680 725 2.077627 GGCCGTCCTTTCTTCTTCTTC 58.922 52.381 0.00 0.00 0.00 2.87
681 726 2.077627 GCCGTCCTTTCTTCTTCTTCC 58.922 52.381 0.00 0.00 0.00 3.46
682 727 2.289756 GCCGTCCTTTCTTCTTCTTCCT 60.290 50.000 0.00 0.00 0.00 3.36
683 728 3.807561 GCCGTCCTTTCTTCTTCTTCCTT 60.808 47.826 0.00 0.00 0.00 3.36
684 729 3.997681 CCGTCCTTTCTTCTTCTTCCTTC 59.002 47.826 0.00 0.00 0.00 3.46
685 730 4.503296 CCGTCCTTTCTTCTTCTTCCTTCA 60.503 45.833 0.00 0.00 0.00 3.02
686 731 4.688413 CGTCCTTTCTTCTTCTTCCTTCAG 59.312 45.833 0.00 0.00 0.00 3.02
687 732 4.454161 GTCCTTTCTTCTTCTTCCTTCAGC 59.546 45.833 0.00 0.00 0.00 4.26
688 733 3.755905 CCTTTCTTCTTCTTCCTTCAGCC 59.244 47.826 0.00 0.00 0.00 4.85
689 734 4.506448 CCTTTCTTCTTCTTCCTTCAGCCT 60.506 45.833 0.00 0.00 0.00 4.58
690 735 4.713792 TTCTTCTTCTTCCTTCAGCCTT 57.286 40.909 0.00 0.00 0.00 4.35
691 736 4.278975 TCTTCTTCTTCCTTCAGCCTTC 57.721 45.455 0.00 0.00 0.00 3.46
692 737 3.906846 TCTTCTTCTTCCTTCAGCCTTCT 59.093 43.478 0.00 0.00 0.00 2.85
693 738 4.349342 TCTTCTTCTTCCTTCAGCCTTCTT 59.651 41.667 0.00 0.00 0.00 2.52
694 739 4.278975 TCTTCTTCCTTCAGCCTTCTTC 57.721 45.455 0.00 0.00 0.00 2.87
695 740 3.008485 TCTTCTTCCTTCAGCCTTCTTCC 59.992 47.826 0.00 0.00 0.00 3.46
696 741 2.625639 TCTTCCTTCAGCCTTCTTCCT 58.374 47.619 0.00 0.00 0.00 3.36
697 742 2.304180 TCTTCCTTCAGCCTTCTTCCTG 59.696 50.000 0.00 0.00 0.00 3.86
698 743 1.734655 TCCTTCAGCCTTCTTCCTGT 58.265 50.000 0.00 0.00 0.00 4.00
699 744 2.057922 TCCTTCAGCCTTCTTCCTGTT 58.942 47.619 0.00 0.00 0.00 3.16
700 745 2.443255 TCCTTCAGCCTTCTTCCTGTTT 59.557 45.455 0.00 0.00 0.00 2.83
701 746 2.816672 CCTTCAGCCTTCTTCCTGTTTC 59.183 50.000 0.00 0.00 0.00 2.78
702 747 3.480470 CTTCAGCCTTCTTCCTGTTTCA 58.520 45.455 0.00 0.00 0.00 2.69
703 748 3.576078 TCAGCCTTCTTCCTGTTTCAA 57.424 42.857 0.00 0.00 0.00 2.69
704 749 3.214328 TCAGCCTTCTTCCTGTTTCAAC 58.786 45.455 0.00 0.00 0.00 3.18
705 750 2.294512 CAGCCTTCTTCCTGTTTCAACC 59.705 50.000 0.00 0.00 0.00 3.77
706 751 2.091885 AGCCTTCTTCCTGTTTCAACCA 60.092 45.455 0.00 0.00 0.00 3.67
707 752 2.893489 GCCTTCTTCCTGTTTCAACCAT 59.107 45.455 0.00 0.00 0.00 3.55
708 753 3.321968 GCCTTCTTCCTGTTTCAACCATT 59.678 43.478 0.00 0.00 0.00 3.16
709 754 4.559502 GCCTTCTTCCTGTTTCAACCATTC 60.560 45.833 0.00 0.00 0.00 2.67
710 755 4.021981 CCTTCTTCCTGTTTCAACCATTCC 60.022 45.833 0.00 0.00 0.00 3.01
711 756 3.496331 TCTTCCTGTTTCAACCATTCCC 58.504 45.455 0.00 0.00 0.00 3.97
712 757 2.302587 TCCTGTTTCAACCATTCCCC 57.697 50.000 0.00 0.00 0.00 4.81
713 758 1.203125 TCCTGTTTCAACCATTCCCCC 60.203 52.381 0.00 0.00 0.00 5.40
714 759 1.203174 CCTGTTTCAACCATTCCCCCT 60.203 52.381 0.00 0.00 0.00 4.79
715 760 2.171003 CTGTTTCAACCATTCCCCCTC 58.829 52.381 0.00 0.00 0.00 4.30
716 761 1.786441 TGTTTCAACCATTCCCCCTCT 59.214 47.619 0.00 0.00 0.00 3.69
717 762 2.225017 TGTTTCAACCATTCCCCCTCTC 60.225 50.000 0.00 0.00 0.00 3.20
718 763 1.753903 TTCAACCATTCCCCCTCTCA 58.246 50.000 0.00 0.00 0.00 3.27
719 764 0.991920 TCAACCATTCCCCCTCTCAC 59.008 55.000 0.00 0.00 0.00 3.51
720 765 0.698238 CAACCATTCCCCCTCTCACA 59.302 55.000 0.00 0.00 0.00 3.58
721 766 1.075374 CAACCATTCCCCCTCTCACAA 59.925 52.381 0.00 0.00 0.00 3.33
722 767 1.455822 ACCATTCCCCCTCTCACAAA 58.544 50.000 0.00 0.00 0.00 2.83
723 768 1.786441 ACCATTCCCCCTCTCACAAAA 59.214 47.619 0.00 0.00 0.00 2.44
724 769 2.383338 ACCATTCCCCCTCTCACAAAAT 59.617 45.455 0.00 0.00 0.00 1.82
725 770 3.181407 ACCATTCCCCCTCTCACAAAATT 60.181 43.478 0.00 0.00 0.00 1.82
726 771 3.196254 CCATTCCCCCTCTCACAAAATTG 59.804 47.826 0.00 0.00 0.00 2.32
727 772 3.893753 TTCCCCCTCTCACAAAATTGA 57.106 42.857 0.00 0.00 0.00 2.57
728 773 4.402616 TTCCCCCTCTCACAAAATTGAT 57.597 40.909 0.00 0.00 0.00 2.57
729 774 4.402616 TCCCCCTCTCACAAAATTGATT 57.597 40.909 0.00 0.00 0.00 2.57
730 775 4.750941 TCCCCCTCTCACAAAATTGATTT 58.249 39.130 0.00 0.00 0.00 2.17
731 776 5.898120 TCCCCCTCTCACAAAATTGATTTA 58.102 37.500 0.00 0.00 0.00 1.40
732 777 6.502138 TCCCCCTCTCACAAAATTGATTTAT 58.498 36.000 0.00 0.00 0.00 1.40
733 778 6.607198 TCCCCCTCTCACAAAATTGATTTATC 59.393 38.462 0.00 0.00 0.00 1.75
734 779 6.608808 CCCCCTCTCACAAAATTGATTTATCT 59.391 38.462 0.00 0.00 0.00 1.98
735 780 7.779798 CCCCCTCTCACAAAATTGATTTATCTA 59.220 37.037 0.00 0.00 0.00 1.98
736 781 9.189156 CCCCTCTCACAAAATTGATTTATCTAA 57.811 33.333 0.00 0.00 0.00 2.10
763 808 7.269316 TGGTAAATTCAGTCGACATAGCATTA 58.731 34.615 19.50 6.94 0.00 1.90
774 819 6.700081 GTCGACATAGCATTATTGGTAGACAA 59.300 38.462 11.55 0.00 44.54 3.18
778 823 8.396272 ACATAGCATTATTGGTAGACAAATCC 57.604 34.615 3.28 0.00 43.46 3.01
781 826 6.662755 AGCATTATTGGTAGACAAATCCTCA 58.337 36.000 0.00 0.00 43.46 3.86
784 829 8.507249 GCATTATTGGTAGACAAATCCTCATAC 58.493 37.037 0.00 0.00 43.46 2.39
785 830 9.003658 CATTATTGGTAGACAAATCCTCATACC 57.996 37.037 0.00 0.00 43.46 2.73
786 831 6.575244 ATTGGTAGACAAATCCTCATACCA 57.425 37.500 0.00 0.00 43.46 3.25
787 832 6.575244 TTGGTAGACAAATCCTCATACCAT 57.425 37.500 2.96 0.00 41.55 3.55
814 859 9.866655 ATTTATTTATTAGAGCCACCATTCTCA 57.133 29.630 0.00 0.00 0.00 3.27
815 860 8.677148 TTATTTATTAGAGCCACCATTCTCAC 57.323 34.615 0.00 0.00 0.00 3.51
817 862 0.175760 TAGAGCCACCATTCTCACGC 59.824 55.000 0.00 0.00 0.00 5.34
829 874 2.140065 TCTCACGCTGTTGAGACTTG 57.860 50.000 5.66 0.00 45.79 3.16
830 875 1.681264 TCTCACGCTGTTGAGACTTGA 59.319 47.619 5.66 0.00 45.79 3.02
831 876 2.057316 CTCACGCTGTTGAGACTTGAG 58.943 52.381 1.59 0.00 45.19 3.02
832 877 1.681264 TCACGCTGTTGAGACTTGAGA 59.319 47.619 0.00 0.00 0.00 3.27
833 878 2.057316 CACGCTGTTGAGACTTGAGAG 58.943 52.381 0.00 0.00 0.00 3.20
834 879 1.683917 ACGCTGTTGAGACTTGAGAGT 59.316 47.619 0.00 0.00 39.32 3.24
835 880 2.885266 ACGCTGTTGAGACTTGAGAGTA 59.115 45.455 0.00 0.00 35.88 2.59
836 881 3.318275 ACGCTGTTGAGACTTGAGAGTAA 59.682 43.478 0.00 0.00 35.88 2.24
837 882 3.670991 CGCTGTTGAGACTTGAGAGTAAC 59.329 47.826 0.00 0.00 35.88 2.50
855 901 2.434884 ATCGGTCTTGCGTGCAGG 60.435 61.111 1.01 1.01 0.00 4.85
868 917 3.130164 TGCGTGCAGGCATTTGTTAATAT 59.870 39.130 28.89 0.00 38.17 1.28
917 966 5.050837 GCAGCGATGACAAAAGAAACAAAAT 60.051 36.000 4.02 0.00 0.00 1.82
918 967 6.143758 GCAGCGATGACAAAAGAAACAAAATA 59.856 34.615 4.02 0.00 0.00 1.40
919 968 7.617935 GCAGCGATGACAAAAGAAACAAAATAG 60.618 37.037 4.02 0.00 0.00 1.73
920 969 7.379529 CAGCGATGACAAAAGAAACAAAATAGT 59.620 33.333 0.00 0.00 0.00 2.12
1003 1056 0.371301 CGCACGTCAGATCAACATGG 59.629 55.000 0.00 0.00 0.00 3.66
1022 1081 0.387750 GCTTTGCCTTTTCTGCGAGG 60.388 55.000 0.00 0.00 36.09 4.63
1071 1139 2.228103 TGGAGCGCGACCTGTATATAAG 59.772 50.000 22.63 0.00 0.00 1.73
1075 1143 3.120408 AGCGCGACCTGTATATAAGTACG 60.120 47.826 12.10 0.00 0.00 3.67
1179 1256 2.063378 CCCCAGTCTCCAGCTCCTC 61.063 68.421 0.00 0.00 0.00 3.71
1620 1708 2.824041 GGGCCGTCGTACGAGGTA 60.824 66.667 29.64 3.76 46.05 3.08
1623 1711 1.369091 GGCCGTCGTACGAGGTAGAA 61.369 60.000 29.64 1.89 46.05 2.10
1710 1798 2.847234 AAGGAGGTGGTCGGCACA 60.847 61.111 0.00 0.00 0.00 4.57
1728 1816 3.250986 GACGTTTTCCGGCTGGTC 58.749 61.111 12.43 0.00 43.06 4.02
1952 2083 0.025513 GTCATTCGCTCGATGTGTGC 59.974 55.000 0.00 0.00 0.00 4.57
2094 2227 6.531503 TCTTGAAGAAGGGTGTAGATGTAG 57.468 41.667 0.00 0.00 0.00 2.74
2103 2236 6.963083 AGGGTGTAGATGTAGATAGTCAAC 57.037 41.667 0.00 0.00 0.00 3.18
2145 2281 9.887406 AATAAACAGTTCTTTTGTATACGGTTG 57.113 29.630 0.00 0.00 31.14 3.77
2149 2285 6.539464 ACAGTTCTTTTGTATACGGTTGTCAA 59.461 34.615 0.00 0.00 0.00 3.18
2152 2288 6.774354 TCTTTTGTATACGGTTGTCAACTC 57.226 37.500 15.17 5.11 0.00 3.01
2157 2293 0.319211 TACGGTTGTCAACTCGCCAG 60.319 55.000 19.84 7.82 0.00 4.85
2164 2302 2.185350 CAACTCGCCAGCCTCGAT 59.815 61.111 0.00 0.00 35.25 3.59
2165 2303 1.880340 CAACTCGCCAGCCTCGATC 60.880 63.158 0.00 0.00 35.25 3.69
2166 2304 3.417275 AACTCGCCAGCCTCGATCG 62.417 63.158 9.36 9.36 35.25 3.69
2167 2305 3.586961 CTCGCCAGCCTCGATCGA 61.587 66.667 18.32 18.32 35.25 3.59
2170 2308 2.026879 GCCAGCCTCGATCGAGAC 59.973 66.667 39.64 31.42 44.53 3.36
2182 2329 5.445142 CCTCGATCGAGACAACATTTTCTTG 60.445 44.000 39.64 17.91 44.53 3.02
2239 3481 5.005012 ACGTACAATTCGTATTTCGTGGATG 59.995 40.000 0.00 0.00 39.78 3.51
2240 3482 4.273005 ACAATTCGTATTTCGTGGATGC 57.727 40.909 0.00 0.00 40.80 3.91
2259 3501 6.601613 TGGATGCCGAGTTTCTTGTATATTTT 59.398 34.615 0.00 0.00 0.00 1.82
2260 3502 7.132863 GGATGCCGAGTTTCTTGTATATTTTC 58.867 38.462 0.00 0.00 0.00 2.29
2261 3503 7.201696 GGATGCCGAGTTTCTTGTATATTTTCA 60.202 37.037 0.00 0.00 0.00 2.69
2262 3504 7.441890 TGCCGAGTTTCTTGTATATTTTCAA 57.558 32.000 0.00 0.00 0.00 2.69
2263 3505 7.877003 TGCCGAGTTTCTTGTATATTTTCAAA 58.123 30.769 0.00 0.00 0.00 2.69
2265 3507 8.798153 GCCGAGTTTCTTGTATATTTTCAAATG 58.202 33.333 0.00 0.00 0.00 2.32
2266 3508 9.840427 CCGAGTTTCTTGTATATTTTCAAATGT 57.160 29.630 0.00 0.00 0.00 2.71
2285 3714 3.719924 TGTACGTTCGTCTGGTTTGATT 58.280 40.909 0.00 0.00 0.00 2.57
2400 3873 5.418840 GGCTATTGGGTTCAATTCTCTTGAA 59.581 40.000 0.00 0.00 42.90 2.69
2481 3998 1.003233 GGAACACCACTACCTCCCTTG 59.997 57.143 0.00 0.00 0.00 3.61
2521 4038 4.709886 AGGAATAAACATGGCCACCTTTAC 59.290 41.667 8.16 2.08 0.00 2.01
2532 4049 2.814336 GCCACCTTTACACCAGAAAGAG 59.186 50.000 0.00 0.00 36.22 2.85
2534 4051 3.496870 CCACCTTTACACCAGAAAGAGCT 60.497 47.826 0.00 0.00 36.22 4.09
2542 4059 3.196685 ACACCAGAAAGAGCTATGACTCC 59.803 47.826 0.00 0.00 37.39 3.85
2543 4060 2.769095 ACCAGAAAGAGCTATGACTCCC 59.231 50.000 0.00 0.00 37.39 4.30
2544 4061 3.037549 CCAGAAAGAGCTATGACTCCCT 58.962 50.000 0.00 0.00 37.39 4.20
2545 4062 3.454082 CCAGAAAGAGCTATGACTCCCTT 59.546 47.826 0.00 0.00 37.39 3.95
2546 4063 4.080638 CCAGAAAGAGCTATGACTCCCTTT 60.081 45.833 0.00 0.00 37.39 3.11
2547 4064 5.115480 CAGAAAGAGCTATGACTCCCTTTC 58.885 45.833 10.66 10.66 37.39 2.62
2548 4065 4.780021 AGAAAGAGCTATGACTCCCTTTCA 59.220 41.667 17.49 0.00 35.15 2.69
2549 4066 5.249393 AGAAAGAGCTATGACTCCCTTTCAA 59.751 40.000 17.49 0.00 35.15 2.69
2550 4067 5.505181 AAGAGCTATGACTCCCTTTCAAA 57.495 39.130 0.00 0.00 37.39 2.69
2551 4068 5.096443 AGAGCTATGACTCCCTTTCAAAG 57.904 43.478 0.00 0.00 37.39 2.77
2552 4069 4.780021 AGAGCTATGACTCCCTTTCAAAGA 59.220 41.667 0.00 0.00 37.39 2.52
2553 4070 5.249393 AGAGCTATGACTCCCTTTCAAAGAA 59.751 40.000 0.00 0.00 37.39 2.52
2554 4071 5.880901 AGCTATGACTCCCTTTCAAAGAAA 58.119 37.500 0.00 0.00 0.00 2.52
2555 4072 6.306987 AGCTATGACTCCCTTTCAAAGAAAA 58.693 36.000 0.00 0.00 0.00 2.29
2556 4073 6.432472 AGCTATGACTCCCTTTCAAAGAAAAG 59.568 38.462 0.00 0.00 36.26 2.27
2557 4074 6.431234 GCTATGACTCCCTTTCAAAGAAAAGA 59.569 38.462 0.00 0.00 38.30 2.52
2558 4075 7.040409 GCTATGACTCCCTTTCAAAGAAAAGAA 60.040 37.037 0.00 0.00 38.30 2.52
2559 4076 7.660030 ATGACTCCCTTTCAAAGAAAAGAAA 57.340 32.000 0.00 0.00 38.30 2.52
2560 4077 7.475137 TGACTCCCTTTCAAAGAAAAGAAAA 57.525 32.000 0.00 0.00 38.30 2.29
2561 4078 7.902087 TGACTCCCTTTCAAAGAAAAGAAAAA 58.098 30.769 0.00 0.00 38.30 1.94
2562 4079 8.034804 TGACTCCCTTTCAAAGAAAAGAAAAAG 58.965 33.333 0.00 0.00 38.30 2.27
2563 4080 8.134202 ACTCCCTTTCAAAGAAAAGAAAAAGA 57.866 30.769 0.00 0.00 38.30 2.52
2564 4081 8.593679 ACTCCCTTTCAAAGAAAAGAAAAAGAA 58.406 29.630 0.00 0.00 38.30 2.52
2565 4082 9.435688 CTCCCTTTCAAAGAAAAGAAAAAGAAA 57.564 29.630 0.00 0.00 38.30 2.52
2566 4083 9.435688 TCCCTTTCAAAGAAAAGAAAAAGAAAG 57.564 29.630 0.00 0.00 38.30 2.62
2567 4084 9.435688 CCCTTTCAAAGAAAAGAAAAAGAAAGA 57.564 29.630 11.79 0.00 41.76 2.52
2573 4090 9.964253 CAAAGAAAAGAAAAAGAAAGAAAGAGC 57.036 29.630 0.00 0.00 0.00 4.09
2574 4091 9.710900 AAAGAAAAGAAAAAGAAAGAAAGAGCA 57.289 25.926 0.00 0.00 0.00 4.26
2575 4092 9.710900 AAGAAAAGAAAAAGAAAGAAAGAGCAA 57.289 25.926 0.00 0.00 0.00 3.91
2576 4093 9.144747 AGAAAAGAAAAAGAAAGAAAGAGCAAC 57.855 29.630 0.00 0.00 0.00 4.17
2577 4094 7.511809 AAAGAAAAAGAAAGAAAGAGCAACG 57.488 32.000 0.00 0.00 0.00 4.10
2578 4095 6.436843 AGAAAAAGAAAGAAAGAGCAACGA 57.563 33.333 0.00 0.00 0.00 3.85
2579 4096 7.032377 AGAAAAAGAAAGAAAGAGCAACGAT 57.968 32.000 0.00 0.00 0.00 3.73
2580 4097 7.484140 AGAAAAAGAAAGAAAGAGCAACGATT 58.516 30.769 0.00 0.00 0.00 3.34
2581 4098 7.645735 AGAAAAAGAAAGAAAGAGCAACGATTC 59.354 33.333 0.00 0.00 0.00 2.52
2582 4099 6.377327 AAAGAAAGAAAGAGCAACGATTCA 57.623 33.333 0.00 0.00 0.00 2.57
2601 4118 1.891150 CATTGAAGAAGGCCAACAGCT 59.109 47.619 5.01 0.00 43.05 4.24
2613 4130 3.558674 AACAGCTGATAGGTGGTGC 57.441 52.632 23.35 0.00 42.82 5.01
2654 4171 1.168714 GATGAAGCTCACAACCCCAC 58.831 55.000 0.00 0.00 0.00 4.61
2655 4172 0.251341 ATGAAGCTCACAACCCCACC 60.251 55.000 0.00 0.00 0.00 4.61
2656 4173 1.603739 GAAGCTCACAACCCCACCC 60.604 63.158 0.00 0.00 0.00 4.61
2657 4174 3.491598 AAGCTCACAACCCCACCCG 62.492 63.158 0.00 0.00 0.00 5.28
2680 4197 3.106827 TGTGCATCATCTCCTGGTCTTA 58.893 45.455 0.00 0.00 0.00 2.10
2717 4234 0.321564 TTGAGCATGTAAGCAGCGGT 60.322 50.000 0.00 0.00 36.85 5.68
2724 4241 2.472695 TGTAAGCAGCGGTTGAAGAT 57.527 45.000 0.00 0.00 0.00 2.40
2725 4242 2.076100 TGTAAGCAGCGGTTGAAGATG 58.924 47.619 0.00 0.00 0.00 2.90
2726 4243 2.076863 GTAAGCAGCGGTTGAAGATGT 58.923 47.619 0.00 0.00 0.00 3.06
2727 4244 0.877071 AAGCAGCGGTTGAAGATGTG 59.123 50.000 0.00 0.00 0.00 3.21
2728 4245 0.035317 AGCAGCGGTTGAAGATGTGA 59.965 50.000 0.00 0.00 0.00 3.58
2729 4246 0.166814 GCAGCGGTTGAAGATGTGAC 59.833 55.000 0.00 0.00 0.00 3.67
2730 4247 0.439985 CAGCGGTTGAAGATGTGACG 59.560 55.000 0.00 0.00 0.00 4.35
2731 4248 1.132640 GCGGTTGAAGATGTGACGC 59.867 57.895 0.00 0.00 38.70 5.19
2732 4249 1.787847 CGGTTGAAGATGTGACGCC 59.212 57.895 0.00 0.00 0.00 5.68
2733 4250 1.635663 CGGTTGAAGATGTGACGCCC 61.636 60.000 0.00 0.00 0.00 6.13
2734 4251 1.635663 GGTTGAAGATGTGACGCCCG 61.636 60.000 0.00 0.00 0.00 6.13
2735 4252 1.375396 TTGAAGATGTGACGCCCGG 60.375 57.895 0.00 0.00 0.00 5.73
2736 4253 1.822114 TTGAAGATGTGACGCCCGGA 61.822 55.000 0.73 0.00 0.00 5.14
2737 4254 1.144057 GAAGATGTGACGCCCGGAT 59.856 57.895 0.73 0.00 0.00 4.18
2738 4255 0.387929 GAAGATGTGACGCCCGGATA 59.612 55.000 0.73 0.00 0.00 2.59
2739 4256 0.828022 AAGATGTGACGCCCGGATAA 59.172 50.000 0.73 0.00 0.00 1.75
2740 4257 1.048601 AGATGTGACGCCCGGATAAT 58.951 50.000 0.73 0.00 0.00 1.28
2741 4258 1.000955 AGATGTGACGCCCGGATAATC 59.999 52.381 0.73 0.00 0.00 1.75
2742 4259 0.756294 ATGTGACGCCCGGATAATCA 59.244 50.000 0.73 0.00 0.00 2.57
2743 4260 0.537653 TGTGACGCCCGGATAATCAA 59.462 50.000 0.73 0.00 0.00 2.57
2744 4261 1.217882 GTGACGCCCGGATAATCAAG 58.782 55.000 0.73 0.00 0.00 3.02
2745 4262 0.531974 TGACGCCCGGATAATCAAGC 60.532 55.000 0.73 0.00 0.00 4.01
2746 4263 0.249911 GACGCCCGGATAATCAAGCT 60.250 55.000 0.73 0.00 0.00 3.74
2747 4264 1.000506 GACGCCCGGATAATCAAGCTA 59.999 52.381 0.73 0.00 0.00 3.32
2748 4265 1.270147 ACGCCCGGATAATCAAGCTAC 60.270 52.381 0.73 0.00 0.00 3.58
2749 4266 1.270094 CGCCCGGATAATCAAGCTACA 60.270 52.381 0.73 0.00 0.00 2.74
2750 4267 2.417719 GCCCGGATAATCAAGCTACAG 58.582 52.381 0.73 0.00 0.00 2.74
2751 4268 2.224305 GCCCGGATAATCAAGCTACAGT 60.224 50.000 0.73 0.00 0.00 3.55
2752 4269 3.006537 GCCCGGATAATCAAGCTACAGTA 59.993 47.826 0.73 0.00 0.00 2.74
2753 4270 4.502604 GCCCGGATAATCAAGCTACAGTAA 60.503 45.833 0.73 0.00 0.00 2.24
2754 4271 4.989168 CCCGGATAATCAAGCTACAGTAAC 59.011 45.833 0.73 0.00 0.00 2.50
2755 4272 5.221461 CCCGGATAATCAAGCTACAGTAACT 60.221 44.000 0.73 0.00 0.00 2.24
2756 4273 5.921408 CCGGATAATCAAGCTACAGTAACTC 59.079 44.000 0.00 0.00 0.00 3.01
2757 4274 6.239064 CCGGATAATCAAGCTACAGTAACTCT 60.239 42.308 0.00 0.00 0.00 3.24
2758 4275 6.858993 CGGATAATCAAGCTACAGTAACTCTC 59.141 42.308 0.00 0.00 0.00 3.20
2759 4276 7.255312 CGGATAATCAAGCTACAGTAACTCTCT 60.255 40.741 0.00 0.00 0.00 3.10
2760 4277 9.069082 GGATAATCAAGCTACAGTAACTCTCTA 57.931 37.037 0.00 0.00 0.00 2.43
2761 4278 9.887406 GATAATCAAGCTACAGTAACTCTCTAC 57.113 37.037 0.00 0.00 0.00 2.59
2762 4279 7.948034 AATCAAGCTACAGTAACTCTCTACT 57.052 36.000 0.00 0.00 32.13 2.57
2764 4281 9.463902 AATCAAGCTACAGTAACTCTCTACTAA 57.536 33.333 0.00 0.00 30.77 2.24
2765 4282 9.635404 ATCAAGCTACAGTAACTCTCTACTAAT 57.365 33.333 0.00 0.00 30.77 1.73
2766 4283 8.894731 TCAAGCTACAGTAACTCTCTACTAATG 58.105 37.037 0.00 0.00 30.77 1.90
2767 4284 8.894731 CAAGCTACAGTAACTCTCTACTAATGA 58.105 37.037 0.00 0.00 30.77 2.57
2768 4285 9.463902 AAGCTACAGTAACTCTCTACTAATGAA 57.536 33.333 0.00 0.00 30.77 2.57
2769 4286 9.116067 AGCTACAGTAACTCTCTACTAATGAAG 57.884 37.037 0.00 0.00 30.77 3.02
2770 4287 7.858879 GCTACAGTAACTCTCTACTAATGAAGC 59.141 40.741 0.00 0.00 30.77 3.86
2771 4288 7.102847 ACAGTAACTCTCTACTAATGAAGCC 57.897 40.000 0.00 0.00 30.77 4.35
2772 4289 6.663953 ACAGTAACTCTCTACTAATGAAGCCA 59.336 38.462 0.00 0.00 30.77 4.75
2773 4290 6.975772 CAGTAACTCTCTACTAATGAAGCCAC 59.024 42.308 0.00 0.00 30.77 5.01
2774 4291 4.640789 ACTCTCTACTAATGAAGCCACG 57.359 45.455 0.00 0.00 0.00 4.94
2775 4292 4.017808 ACTCTCTACTAATGAAGCCACGT 58.982 43.478 0.00 0.00 0.00 4.49
2776 4293 4.096682 ACTCTCTACTAATGAAGCCACGTC 59.903 45.833 0.00 0.00 0.00 4.34
2777 4294 3.064958 TCTCTACTAATGAAGCCACGTCG 59.935 47.826 0.00 0.00 0.00 5.12
2778 4295 2.751259 TCTACTAATGAAGCCACGTCGT 59.249 45.455 0.00 0.00 0.00 4.34
2779 4296 1.992170 ACTAATGAAGCCACGTCGTC 58.008 50.000 0.00 0.00 0.00 4.20
2780 4297 1.278238 CTAATGAAGCCACGTCGTCC 58.722 55.000 0.00 0.00 0.00 4.79
2781 4298 0.604073 TAATGAAGCCACGTCGTCCA 59.396 50.000 0.00 0.00 0.00 4.02
2782 4299 0.036388 AATGAAGCCACGTCGTCCAT 60.036 50.000 0.00 0.00 0.00 3.41
2783 4300 0.740868 ATGAAGCCACGTCGTCCATG 60.741 55.000 0.00 0.00 0.00 3.66
2784 4301 1.080093 GAAGCCACGTCGTCCATGA 60.080 57.895 0.00 0.00 0.00 3.07
2785 4302 0.460284 GAAGCCACGTCGTCCATGAT 60.460 55.000 0.00 0.00 0.00 2.45
2786 4303 0.036388 AAGCCACGTCGTCCATGATT 60.036 50.000 0.00 0.00 0.00 2.57
2787 4304 0.821517 AGCCACGTCGTCCATGATTA 59.178 50.000 0.00 0.00 0.00 1.75
2788 4305 0.928229 GCCACGTCGTCCATGATTAC 59.072 55.000 0.00 0.00 0.00 1.89
2789 4306 1.197055 CCACGTCGTCCATGATTACG 58.803 55.000 0.00 1.27 40.40 3.18
2790 4307 1.197055 CACGTCGTCCATGATTACGG 58.803 55.000 12.99 3.77 39.52 4.02
2791 4308 0.813184 ACGTCGTCCATGATTACGGT 59.187 50.000 12.99 4.25 39.52 4.83
2792 4309 1.203052 ACGTCGTCCATGATTACGGTT 59.797 47.619 12.99 0.00 39.52 4.44
2793 4310 1.586578 CGTCGTCCATGATTACGGTTG 59.413 52.381 12.99 3.16 39.52 3.77
2794 4311 2.613691 GTCGTCCATGATTACGGTTGT 58.386 47.619 12.99 0.00 39.52 3.32
2795 4312 2.997986 GTCGTCCATGATTACGGTTGTT 59.002 45.455 12.99 0.00 39.52 2.83
2796 4313 4.175516 GTCGTCCATGATTACGGTTGTTA 58.824 43.478 12.99 0.00 39.52 2.41
2797 4314 4.626604 GTCGTCCATGATTACGGTTGTTAA 59.373 41.667 12.99 0.00 39.52 2.01
2798 4315 5.120519 GTCGTCCATGATTACGGTTGTTAAA 59.879 40.000 12.99 0.00 39.52 1.52
2799 4316 5.120519 TCGTCCATGATTACGGTTGTTAAAC 59.879 40.000 12.99 0.00 39.52 2.01
2800 4317 5.121142 CGTCCATGATTACGGTTGTTAAACT 59.879 40.000 0.00 0.00 36.48 2.66
2801 4318 6.540205 GTCCATGATTACGGTTGTTAAACTC 58.460 40.000 0.00 0.00 36.48 3.01
2802 4319 5.349270 TCCATGATTACGGTTGTTAAACTCG 59.651 40.000 0.00 0.00 36.48 4.18
2803 4320 4.650545 TGATTACGGTTGTTAAACTCGC 57.349 40.909 0.00 0.00 36.48 5.03
2804 4321 4.056740 TGATTACGGTTGTTAAACTCGCA 58.943 39.130 0.00 0.00 36.48 5.10
2805 4322 4.510711 TGATTACGGTTGTTAAACTCGCAA 59.489 37.500 0.00 0.00 36.48 4.85
2806 4323 5.179742 TGATTACGGTTGTTAAACTCGCAAT 59.820 36.000 0.00 0.00 36.48 3.56
2807 4324 3.262135 ACGGTTGTTAAACTCGCAATG 57.738 42.857 0.00 0.00 36.48 2.82
2808 4325 2.873472 ACGGTTGTTAAACTCGCAATGA 59.127 40.909 0.00 0.00 36.48 2.57
2809 4326 3.500680 ACGGTTGTTAAACTCGCAATGAT 59.499 39.130 0.00 0.00 36.48 2.45
2810 4327 4.023536 ACGGTTGTTAAACTCGCAATGATT 60.024 37.500 0.00 0.00 36.48 2.57
2811 4328 4.553429 CGGTTGTTAAACTCGCAATGATTC 59.447 41.667 0.00 0.00 36.48 2.52
2812 4329 5.457140 GGTTGTTAAACTCGCAATGATTCA 58.543 37.500 0.00 0.00 36.48 2.57
2813 4330 5.918011 GGTTGTTAAACTCGCAATGATTCAA 59.082 36.000 0.00 0.00 36.48 2.69
2814 4331 6.419413 GGTTGTTAAACTCGCAATGATTCAAA 59.581 34.615 0.00 0.00 36.48 2.69
2815 4332 6.984740 TGTTAAACTCGCAATGATTCAAAC 57.015 33.333 0.00 0.00 0.00 2.93
2816 4333 5.918011 TGTTAAACTCGCAATGATTCAAACC 59.082 36.000 0.00 0.00 0.00 3.27
2817 4334 3.575965 AACTCGCAATGATTCAAACCC 57.424 42.857 0.00 0.00 0.00 4.11
2818 4335 2.513753 ACTCGCAATGATTCAAACCCA 58.486 42.857 0.00 0.00 0.00 4.51
2819 4336 2.228822 ACTCGCAATGATTCAAACCCAC 59.771 45.455 0.00 0.00 0.00 4.61
2820 4337 2.489329 CTCGCAATGATTCAAACCCACT 59.511 45.455 0.00 0.00 0.00 4.00
2821 4338 2.487762 TCGCAATGATTCAAACCCACTC 59.512 45.455 0.00 0.00 0.00 3.51
2822 4339 2.228582 CGCAATGATTCAAACCCACTCA 59.771 45.455 0.00 0.00 0.00 3.41
2823 4340 3.305267 CGCAATGATTCAAACCCACTCAA 60.305 43.478 0.00 0.00 0.00 3.02
2824 4341 4.618927 CGCAATGATTCAAACCCACTCAAT 60.619 41.667 0.00 0.00 0.00 2.57
2825 4342 4.628333 GCAATGATTCAAACCCACTCAATG 59.372 41.667 0.00 0.00 0.00 2.82
2826 4343 5.786311 CAATGATTCAAACCCACTCAATGT 58.214 37.500 0.00 0.00 0.00 2.71
2827 4344 6.225318 CAATGATTCAAACCCACTCAATGTT 58.775 36.000 0.00 0.00 0.00 2.71
2828 4345 5.452078 TGATTCAAACCCACTCAATGTTC 57.548 39.130 0.00 0.00 0.00 3.18
2829 4346 4.892345 TGATTCAAACCCACTCAATGTTCA 59.108 37.500 0.00 0.00 0.00 3.18
2830 4347 5.362143 TGATTCAAACCCACTCAATGTTCAA 59.638 36.000 0.00 0.00 0.00 2.69
2831 4348 5.667539 TTCAAACCCACTCAATGTTCAAA 57.332 34.783 0.00 0.00 0.00 2.69
2832 4349 5.667539 TCAAACCCACTCAATGTTCAAAA 57.332 34.783 0.00 0.00 0.00 2.44
2833 4350 6.232581 TCAAACCCACTCAATGTTCAAAAT 57.767 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 71 9.167311 AGTTAATCAGTGGTTTAGCTTTAGATG 57.833 33.333 0.00 0.00 0.00 2.90
68 73 9.649167 GTAGTTAATCAGTGGTTTAGCTTTAGA 57.351 33.333 0.00 0.00 0.00 2.10
81 92 8.479313 TGTTATCTTGCAGTAGTTAATCAGTG 57.521 34.615 0.00 0.00 0.00 3.66
91 102 5.654317 CTGCTGATGTTATCTTGCAGTAG 57.346 43.478 19.21 0.00 44.38 2.57
135 146 4.107051 AGCAGCCAATGAACGCGC 62.107 61.111 5.73 0.00 0.00 6.86
166 177 4.429212 CGACACGGTGATCGCCCA 62.429 66.667 19.63 0.00 43.89 5.36
214 225 2.622942 GGCGGCAGAAATCAATTCCATA 59.377 45.455 3.07 0.00 38.94 2.74
333 344 2.526873 ACCACGAAGTCAGGGCCT 60.527 61.111 0.00 0.00 41.61 5.19
353 365 2.510948 GAGCATATCTCCACGCACG 58.489 57.895 0.00 0.00 35.77 5.34
384 396 4.866486 ACCCGTCGACATAAAACTATTCAC 59.134 41.667 17.16 0.00 0.00 3.18
439 451 4.018415 TGCTTTTCAAGGTTATCTAGCCCT 60.018 41.667 0.00 0.00 0.00 5.19
504 538 7.112779 AGGAGTAATGATTTTCTTCCGTCAAT 58.887 34.615 0.00 0.00 0.00 2.57
505 539 6.472887 AGGAGTAATGATTTTCTTCCGTCAA 58.527 36.000 0.00 0.00 0.00 3.18
509 543 6.702282 GGAGTAGGAGTAATGATTTTCTTCCG 59.298 42.308 0.00 0.00 0.00 4.30
519 553 5.202004 GGAGAAGTGGAGTAGGAGTAATGA 58.798 45.833 0.00 0.00 0.00 2.57
524 558 1.717077 TGGGAGAAGTGGAGTAGGAGT 59.283 52.381 0.00 0.00 0.00 3.85
525 559 2.291930 ACTGGGAGAAGTGGAGTAGGAG 60.292 54.545 0.00 0.00 0.00 3.69
526 560 1.717077 ACTGGGAGAAGTGGAGTAGGA 59.283 52.381 0.00 0.00 0.00 2.94
527 561 1.827969 CACTGGGAGAAGTGGAGTAGG 59.172 57.143 0.00 0.00 43.22 3.18
528 562 2.808919 TCACTGGGAGAAGTGGAGTAG 58.191 52.381 4.63 0.00 46.27 2.57
529 563 2.992847 TCACTGGGAGAAGTGGAGTA 57.007 50.000 4.63 0.00 46.27 2.59
530 564 2.103153 TTCACTGGGAGAAGTGGAGT 57.897 50.000 4.63 0.00 46.27 3.85
545 579 4.622740 GCAATCTAATGTGGCAGTTTTCAC 59.377 41.667 0.00 0.00 34.71 3.18
572 617 7.538575 ACACACAGCCTGATTTTTATATTGAC 58.461 34.615 0.00 0.00 0.00 3.18
574 619 9.507280 CTTACACACAGCCTGATTTTTATATTG 57.493 33.333 0.00 0.00 0.00 1.90
578 623 6.128282 CGACTTACACACAGCCTGATTTTTAT 60.128 38.462 0.00 0.00 0.00 1.40
579 624 5.178623 CGACTTACACACAGCCTGATTTTTA 59.821 40.000 0.00 0.00 0.00 1.52
580 625 4.024048 CGACTTACACACAGCCTGATTTTT 60.024 41.667 0.00 0.00 0.00 1.94
581 626 3.498397 CGACTTACACACAGCCTGATTTT 59.502 43.478 0.00 0.00 0.00 1.82
582 627 3.067106 CGACTTACACACAGCCTGATTT 58.933 45.455 0.00 0.00 0.00 2.17
583 628 2.688507 CGACTTACACACAGCCTGATT 58.311 47.619 0.00 0.00 0.00 2.57
584 629 1.673033 GCGACTTACACACAGCCTGAT 60.673 52.381 0.00 0.00 0.00 2.90
585 630 0.319555 GCGACTTACACACAGCCTGA 60.320 55.000 0.00 0.00 0.00 3.86
586 631 1.291877 GGCGACTTACACACAGCCTG 61.292 60.000 0.00 0.00 41.21 4.85
588 633 0.245539 TAGGCGACTTACACACAGCC 59.754 55.000 0.00 0.00 43.67 4.85
589 634 2.074547 TTAGGCGACTTACACACAGC 57.925 50.000 0.00 0.00 43.67 4.40
590 635 5.607119 ATTTTTAGGCGACTTACACACAG 57.393 39.130 0.00 0.00 43.67 3.66
592 637 8.959734 AATAAATTTTTAGGCGACTTACACAC 57.040 30.769 0.00 0.00 43.67 3.82
593 638 9.968870 AAAATAAATTTTTAGGCGACTTACACA 57.031 25.926 0.00 0.00 34.87 3.72
597 642 8.586744 ACCCAAAATAAATTTTTAGGCGACTTA 58.413 29.630 0.00 0.00 38.76 2.24
598 643 7.446769 ACCCAAAATAAATTTTTAGGCGACTT 58.553 30.769 0.00 0.00 38.76 3.01
599 644 6.999950 ACCCAAAATAAATTTTTAGGCGACT 58.000 32.000 0.00 0.00 40.23 4.18
600 645 8.760103 TTACCCAAAATAAATTTTTAGGCGAC 57.240 30.769 0.00 0.00 37.86 5.19
602 647 8.766000 ACTTACCCAAAATAAATTTTTAGGCG 57.234 30.769 0.00 5.91 37.86 5.52
612 657 9.343539 CCCAAAAATCAACTTACCCAAAATAAA 57.656 29.630 0.00 0.00 0.00 1.40
613 658 7.445707 GCCCAAAAATCAACTTACCCAAAATAA 59.554 33.333 0.00 0.00 0.00 1.40
614 659 6.937465 GCCCAAAAATCAACTTACCCAAAATA 59.063 34.615 0.00 0.00 0.00 1.40
616 661 5.126779 GCCCAAAAATCAACTTACCCAAAA 58.873 37.500 0.00 0.00 0.00 2.44
617 662 4.445019 GGCCCAAAAATCAACTTACCCAAA 60.445 41.667 0.00 0.00 0.00 3.28
618 663 3.071747 GGCCCAAAAATCAACTTACCCAA 59.928 43.478 0.00 0.00 0.00 4.12
619 664 2.635427 GGCCCAAAAATCAACTTACCCA 59.365 45.455 0.00 0.00 0.00 4.51
620 665 2.635427 TGGCCCAAAAATCAACTTACCC 59.365 45.455 0.00 0.00 0.00 3.69
621 666 4.551702 ATGGCCCAAAAATCAACTTACC 57.448 40.909 0.00 0.00 0.00 2.85
622 667 4.694982 CCAATGGCCCAAAAATCAACTTAC 59.305 41.667 0.00 0.00 0.00 2.34
623 668 4.594920 TCCAATGGCCCAAAAATCAACTTA 59.405 37.500 0.00 0.00 0.00 2.24
624 669 3.393941 TCCAATGGCCCAAAAATCAACTT 59.606 39.130 0.00 0.00 0.00 2.66
625 670 2.978278 TCCAATGGCCCAAAAATCAACT 59.022 40.909 0.00 0.00 0.00 3.16
626 671 3.415457 TCCAATGGCCCAAAAATCAAC 57.585 42.857 0.00 0.00 0.00 3.18
627 672 4.654389 AATCCAATGGCCCAAAAATCAA 57.346 36.364 0.00 0.00 0.00 2.57
629 674 6.413892 TCTTTAATCCAATGGCCCAAAAATC 58.586 36.000 0.00 0.00 0.00 2.17
630 675 6.385766 TCTTTAATCCAATGGCCCAAAAAT 57.614 33.333 0.00 0.00 0.00 1.82
631 676 5.832539 TCTTTAATCCAATGGCCCAAAAA 57.167 34.783 0.00 0.00 0.00 1.94
632 677 5.104569 GGATCTTTAATCCAATGGCCCAAAA 60.105 40.000 0.00 0.00 38.09 2.44
633 678 4.408596 GGATCTTTAATCCAATGGCCCAAA 59.591 41.667 0.00 0.00 38.09 3.28
636 681 3.575805 TGGATCTTTAATCCAATGGCCC 58.424 45.455 0.00 0.00 44.54 5.80
643 688 2.650322 GGCCGTTGGATCTTTAATCCA 58.350 47.619 2.63 2.63 45.71 3.41
644 689 1.602377 CGGCCGTTGGATCTTTAATCC 59.398 52.381 19.50 0.00 38.66 3.01
646 691 2.285977 GACGGCCGTTGGATCTTTAAT 58.714 47.619 34.65 3.41 0.00 1.40
650 695 1.838073 AAGGACGGCCGTTGGATCTT 61.838 55.000 34.65 24.61 39.96 2.40
653 698 1.376812 GAAAGGACGGCCGTTGGAT 60.377 57.895 34.65 19.48 35.94 3.41
654 699 2.031465 GAAAGGACGGCCGTTGGA 59.969 61.111 34.65 0.00 35.94 3.53
655 700 1.574702 GAAGAAAGGACGGCCGTTGG 61.575 60.000 34.65 2.16 35.94 3.77
656 701 0.602905 AGAAGAAAGGACGGCCGTTG 60.603 55.000 34.65 2.63 35.94 4.10
658 703 0.320508 GAAGAAGAAAGGACGGCCGT 60.321 55.000 34.89 34.89 39.96 5.68
659 704 0.037232 AGAAGAAGAAAGGACGGCCG 60.037 55.000 26.86 26.86 39.96 6.13
660 705 2.077627 GAAGAAGAAGAAAGGACGGCC 58.922 52.381 0.00 0.00 0.00 6.13
661 706 2.077627 GGAAGAAGAAGAAAGGACGGC 58.922 52.381 0.00 0.00 0.00 5.68
663 708 4.632153 TGAAGGAAGAAGAAGAAAGGACG 58.368 43.478 0.00 0.00 0.00 4.79
664 709 4.454161 GCTGAAGGAAGAAGAAGAAAGGAC 59.546 45.833 0.00 0.00 0.00 3.85
665 710 4.505742 GGCTGAAGGAAGAAGAAGAAAGGA 60.506 45.833 0.00 0.00 0.00 3.36
666 711 3.755905 GGCTGAAGGAAGAAGAAGAAAGG 59.244 47.826 0.00 0.00 0.00 3.11
667 712 4.650734 AGGCTGAAGGAAGAAGAAGAAAG 58.349 43.478 0.00 0.00 0.00 2.62
668 713 4.713792 AGGCTGAAGGAAGAAGAAGAAA 57.286 40.909 0.00 0.00 0.00 2.52
669 714 4.349342 AGAAGGCTGAAGGAAGAAGAAGAA 59.651 41.667 0.00 0.00 0.00 2.52
670 715 3.906846 AGAAGGCTGAAGGAAGAAGAAGA 59.093 43.478 0.00 0.00 0.00 2.87
671 716 4.284829 AGAAGGCTGAAGGAAGAAGAAG 57.715 45.455 0.00 0.00 0.00 2.85
672 717 4.505742 GGAAGAAGGCTGAAGGAAGAAGAA 60.506 45.833 0.00 0.00 0.00 2.52
673 718 3.008485 GGAAGAAGGCTGAAGGAAGAAGA 59.992 47.826 0.00 0.00 0.00 2.87
674 719 3.008923 AGGAAGAAGGCTGAAGGAAGAAG 59.991 47.826 0.00 0.00 0.00 2.85
675 720 2.982488 AGGAAGAAGGCTGAAGGAAGAA 59.018 45.455 0.00 0.00 0.00 2.52
676 721 2.304180 CAGGAAGAAGGCTGAAGGAAGA 59.696 50.000 0.00 0.00 0.00 2.87
677 722 2.039613 ACAGGAAGAAGGCTGAAGGAAG 59.960 50.000 0.00 0.00 0.00 3.46
678 723 2.057922 ACAGGAAGAAGGCTGAAGGAA 58.942 47.619 0.00 0.00 0.00 3.36
679 724 1.734655 ACAGGAAGAAGGCTGAAGGA 58.265 50.000 0.00 0.00 0.00 3.36
680 725 2.575805 AACAGGAAGAAGGCTGAAGG 57.424 50.000 0.00 0.00 0.00 3.46
681 726 3.480470 TGAAACAGGAAGAAGGCTGAAG 58.520 45.455 0.00 0.00 0.00 3.02
682 727 3.576078 TGAAACAGGAAGAAGGCTGAA 57.424 42.857 0.00 0.00 0.00 3.02
683 728 3.214328 GTTGAAACAGGAAGAAGGCTGA 58.786 45.455 0.00 0.00 0.00 4.26
684 729 2.294512 GGTTGAAACAGGAAGAAGGCTG 59.705 50.000 0.00 0.00 0.00 4.85
685 730 2.091885 TGGTTGAAACAGGAAGAAGGCT 60.092 45.455 0.00 0.00 0.00 4.58
686 731 2.306847 TGGTTGAAACAGGAAGAAGGC 58.693 47.619 0.00 0.00 0.00 4.35
687 732 4.021981 GGAATGGTTGAAACAGGAAGAAGG 60.022 45.833 0.00 0.00 0.00 3.46
688 733 4.021981 GGGAATGGTTGAAACAGGAAGAAG 60.022 45.833 0.00 0.00 0.00 2.85
689 734 3.895041 GGGAATGGTTGAAACAGGAAGAA 59.105 43.478 0.00 0.00 0.00 2.52
690 735 3.496331 GGGAATGGTTGAAACAGGAAGA 58.504 45.455 0.00 0.00 0.00 2.87
691 736 2.562738 GGGGAATGGTTGAAACAGGAAG 59.437 50.000 0.00 0.00 0.00 3.46
692 737 2.604139 GGGGAATGGTTGAAACAGGAA 58.396 47.619 0.00 0.00 0.00 3.36
693 738 1.203125 GGGGGAATGGTTGAAACAGGA 60.203 52.381 0.00 0.00 0.00 3.86
694 739 1.203174 AGGGGGAATGGTTGAAACAGG 60.203 52.381 0.00 0.00 0.00 4.00
695 740 2.171003 GAGGGGGAATGGTTGAAACAG 58.829 52.381 0.00 0.00 0.00 3.16
696 741 1.786441 AGAGGGGGAATGGTTGAAACA 59.214 47.619 0.00 0.00 0.00 2.83
697 742 2.225017 TGAGAGGGGGAATGGTTGAAAC 60.225 50.000 0.00 0.00 0.00 2.78
698 743 2.069775 TGAGAGGGGGAATGGTTGAAA 58.930 47.619 0.00 0.00 0.00 2.69
699 744 1.354368 GTGAGAGGGGGAATGGTTGAA 59.646 52.381 0.00 0.00 0.00 2.69
700 745 0.991920 GTGAGAGGGGGAATGGTTGA 59.008 55.000 0.00 0.00 0.00 3.18
701 746 0.698238 TGTGAGAGGGGGAATGGTTG 59.302 55.000 0.00 0.00 0.00 3.77
702 747 1.455822 TTGTGAGAGGGGGAATGGTT 58.544 50.000 0.00 0.00 0.00 3.67
703 748 1.455822 TTTGTGAGAGGGGGAATGGT 58.544 50.000 0.00 0.00 0.00 3.55
704 749 2.603075 TTTTGTGAGAGGGGGAATGG 57.397 50.000 0.00 0.00 0.00 3.16
705 750 4.088634 TCAATTTTGTGAGAGGGGGAATG 58.911 43.478 0.00 0.00 0.00 2.67
706 751 4.402616 TCAATTTTGTGAGAGGGGGAAT 57.597 40.909 0.00 0.00 0.00 3.01
707 752 3.893753 TCAATTTTGTGAGAGGGGGAA 57.106 42.857 0.00 0.00 0.00 3.97
708 753 4.402616 AATCAATTTTGTGAGAGGGGGA 57.597 40.909 0.00 0.00 0.00 4.81
709 754 6.608808 AGATAAATCAATTTTGTGAGAGGGGG 59.391 38.462 0.00 0.00 0.00 5.40
710 755 7.651027 AGATAAATCAATTTTGTGAGAGGGG 57.349 36.000 0.00 0.00 0.00 4.79
729 774 9.878667 TGTCGACTGAATTTACCATTTAGATAA 57.121 29.630 17.92 0.00 0.00 1.75
731 776 8.964476 ATGTCGACTGAATTTACCATTTAGAT 57.036 30.769 17.92 0.00 0.00 1.98
732 777 9.529325 CTATGTCGACTGAATTTACCATTTAGA 57.471 33.333 17.92 0.00 0.00 2.10
733 778 8.276325 GCTATGTCGACTGAATTTACCATTTAG 58.724 37.037 17.92 0.00 0.00 1.85
734 779 7.766738 TGCTATGTCGACTGAATTTACCATTTA 59.233 33.333 17.92 0.00 0.00 1.40
735 780 6.597672 TGCTATGTCGACTGAATTTACCATTT 59.402 34.615 17.92 0.00 0.00 2.32
736 781 6.112734 TGCTATGTCGACTGAATTTACCATT 58.887 36.000 17.92 0.00 0.00 3.16
737 782 5.670485 TGCTATGTCGACTGAATTTACCAT 58.330 37.500 17.92 0.00 0.00 3.55
738 783 5.079689 TGCTATGTCGACTGAATTTACCA 57.920 39.130 17.92 0.00 0.00 3.25
739 784 6.604735 AATGCTATGTCGACTGAATTTACC 57.395 37.500 17.92 0.00 0.00 2.85
740 785 9.586150 CAATAATGCTATGTCGACTGAATTTAC 57.414 33.333 17.92 0.00 0.00 2.01
741 786 8.773645 CCAATAATGCTATGTCGACTGAATTTA 58.226 33.333 17.92 8.22 0.00 1.40
742 787 7.283127 ACCAATAATGCTATGTCGACTGAATTT 59.717 33.333 17.92 6.32 0.00 1.82
743 788 6.767902 ACCAATAATGCTATGTCGACTGAATT 59.232 34.615 17.92 14.40 0.00 2.17
744 789 6.291377 ACCAATAATGCTATGTCGACTGAAT 58.709 36.000 17.92 4.54 0.00 2.57
745 790 5.670485 ACCAATAATGCTATGTCGACTGAA 58.330 37.500 17.92 1.97 0.00 3.02
746 791 5.276461 ACCAATAATGCTATGTCGACTGA 57.724 39.130 17.92 3.38 0.00 3.41
747 792 6.363626 GTCTACCAATAATGCTATGTCGACTG 59.636 42.308 17.92 8.16 0.00 3.51
748 793 6.040504 TGTCTACCAATAATGCTATGTCGACT 59.959 38.462 17.92 4.95 0.00 4.18
749 794 6.213677 TGTCTACCAATAATGCTATGTCGAC 58.786 40.000 9.11 9.11 0.00 4.20
750 795 6.399639 TGTCTACCAATAATGCTATGTCGA 57.600 37.500 0.00 0.00 0.00 4.20
751 796 7.477144 TTTGTCTACCAATAATGCTATGTCG 57.523 36.000 0.00 0.00 31.81 4.35
754 799 8.627208 AGGATTTGTCTACCAATAATGCTATG 57.373 34.615 0.00 0.00 31.81 2.23
763 808 6.575244 TGGTATGAGGATTTGTCTACCAAT 57.425 37.500 0.00 0.00 36.56 3.16
794 839 4.693283 CGTGAGAATGGTGGCTCTAATAA 58.307 43.478 0.00 0.00 32.44 1.40
798 843 0.175760 GCGTGAGAATGGTGGCTCTA 59.824 55.000 0.00 0.00 32.44 2.43
799 844 1.078848 GCGTGAGAATGGTGGCTCT 60.079 57.895 0.00 0.00 32.44 4.09
800 845 1.078848 AGCGTGAGAATGGTGGCTC 60.079 57.895 0.00 0.00 0.00 4.70
801 846 1.376424 CAGCGTGAGAATGGTGGCT 60.376 57.895 0.00 0.00 0.00 4.75
814 859 1.683917 ACTCTCAAGTCTCAACAGCGT 59.316 47.619 0.00 0.00 0.00 5.07
815 860 2.430546 ACTCTCAAGTCTCAACAGCG 57.569 50.000 0.00 0.00 0.00 5.18
817 862 5.570973 CGATGTTACTCTCAAGTCTCAACAG 59.429 44.000 0.00 0.00 35.83 3.16
826 871 3.614616 GCAAGACCGATGTTACTCTCAAG 59.385 47.826 0.00 0.00 0.00 3.02
828 873 2.415491 CGCAAGACCGATGTTACTCTCA 60.415 50.000 0.00 0.00 43.02 3.27
829 874 2.186076 CGCAAGACCGATGTTACTCTC 58.814 52.381 0.00 0.00 43.02 3.20
830 875 1.544691 ACGCAAGACCGATGTTACTCT 59.455 47.619 0.00 0.00 43.62 3.24
831 876 1.654105 CACGCAAGACCGATGTTACTC 59.346 52.381 0.00 0.00 43.62 2.59
832 877 1.710013 CACGCAAGACCGATGTTACT 58.290 50.000 0.00 0.00 43.62 2.24
833 878 0.094730 GCACGCAAGACCGATGTTAC 59.905 55.000 0.00 0.00 43.62 2.50
834 879 0.319986 TGCACGCAAGACCGATGTTA 60.320 50.000 0.00 0.00 43.62 2.41
835 880 1.568612 CTGCACGCAAGACCGATGTT 61.569 55.000 0.00 0.00 43.62 2.71
836 881 2.029288 CTGCACGCAAGACCGATGT 61.029 57.895 0.00 0.00 43.62 3.06
837 882 2.743752 CCTGCACGCAAGACCGATG 61.744 63.158 0.00 0.00 43.62 3.84
1003 1056 0.387750 CCTCGCAGAAAAGGCAAAGC 60.388 55.000 0.00 0.00 34.09 3.51
1022 1081 2.617274 GGCCGGAGAAACTGTGCAC 61.617 63.158 10.75 10.75 0.00 4.57
1057 1125 3.755378 AGGCCGTACTTATATACAGGTCG 59.245 47.826 0.00 0.00 32.29 4.79
1071 1139 0.682209 TGGAGTCTGGTAGGCCGTAC 60.682 60.000 0.00 0.00 37.67 3.67
1075 1143 1.414550 GAGAATGGAGTCTGGTAGGCC 59.585 57.143 0.00 0.00 0.00 5.19
1118 1188 3.752222 GGCTGGATGAGATAATTGAGCTG 59.248 47.826 0.00 0.00 0.00 4.24
1179 1256 1.089920 CAAGGATCGAGCAAGGTTGG 58.910 55.000 1.84 0.00 0.00 3.77
1526 1608 1.666011 CTGACTGTGTACACGGGCT 59.334 57.895 34.82 18.32 45.96 5.19
1620 1708 4.471726 CGCGCGTACGACCCTTCT 62.472 66.667 24.19 0.00 43.93 2.85
1710 1798 1.301479 GACCAGCCGGAAAACGTCT 60.301 57.895 5.05 0.00 42.24 4.18
1893 2009 1.455959 TCCAACCCAACCCCAAACG 60.456 57.895 0.00 0.00 0.00 3.60
1952 2083 2.169789 CGACTTGCTCTCATGCCCG 61.170 63.158 0.00 0.00 0.00 6.13
2145 2281 2.564553 ATCGAGGCTGGCGAGTTGAC 62.565 60.000 4.59 0.00 41.49 3.18
2149 2285 3.893763 CGATCGAGGCTGGCGAGT 61.894 66.667 10.26 0.00 41.49 4.18
2152 2288 3.586961 TCTCGATCGAGGCTGGCG 61.587 66.667 37.28 17.08 42.20 5.69
2157 2293 1.927895 AATGTTGTCTCGATCGAGGC 58.072 50.000 36.44 36.44 46.19 4.70
2239 3481 8.798153 CATTTGAAAATATACAAGAAACTCGGC 58.202 33.333 0.00 0.00 0.00 5.54
2240 3482 9.840427 ACATTTGAAAATATACAAGAAACTCGG 57.160 29.630 0.00 0.00 0.00 4.63
2259 3501 3.374220 ACCAGACGAACGTACATTTGA 57.626 42.857 0.00 0.00 0.00 2.69
2260 3502 4.025563 TCAAACCAGACGAACGTACATTTG 60.026 41.667 0.00 8.99 0.00 2.32
2261 3503 4.121317 TCAAACCAGACGAACGTACATTT 58.879 39.130 0.00 0.00 0.00 2.32
2262 3504 3.719924 TCAAACCAGACGAACGTACATT 58.280 40.909 0.00 0.00 0.00 2.71
2263 3505 3.374220 TCAAACCAGACGAACGTACAT 57.626 42.857 0.00 0.00 0.00 2.29
2265 3507 3.122445 GGAATCAAACCAGACGAACGTAC 59.878 47.826 0.00 0.00 0.00 3.67
2266 3508 3.319755 GGAATCAAACCAGACGAACGTA 58.680 45.455 0.00 0.00 0.00 3.57
2268 3510 1.126113 CGGAATCAAACCAGACGAACG 59.874 52.381 0.00 0.00 0.00 3.95
2285 3714 3.826157 AGAAAATTGCACCTTGAATCGGA 59.174 39.130 0.00 0.00 0.00 4.55
2355 3784 4.216257 GCCAACTGAGCTAATCTTGTTTGA 59.784 41.667 0.00 0.00 0.00 2.69
2481 3998 1.098050 CCTTCCAGCCATGTTGCTAC 58.902 55.000 0.00 0.00 40.32 3.58
2521 4038 3.431486 GGGAGTCATAGCTCTTTCTGGTG 60.431 52.174 0.00 0.00 35.89 4.17
2532 4049 6.431234 TCTTTTCTTTGAAAGGGAGTCATAGC 59.569 38.462 4.94 0.00 37.27 2.97
2534 4051 8.760980 TTTCTTTTCTTTGAAAGGGAGTCATA 57.239 30.769 4.94 0.00 37.27 2.15
2547 4064 9.964253 GCTCTTTCTTTCTTTTTCTTTTCTTTG 57.036 29.630 0.00 0.00 0.00 2.77
2548 4065 9.710900 TGCTCTTTCTTTCTTTTTCTTTTCTTT 57.289 25.926 0.00 0.00 0.00 2.52
2549 4066 9.710900 TTGCTCTTTCTTTCTTTTTCTTTTCTT 57.289 25.926 0.00 0.00 0.00 2.52
2550 4067 9.144747 GTTGCTCTTTCTTTCTTTTTCTTTTCT 57.855 29.630 0.00 0.00 0.00 2.52
2551 4068 8.104530 CGTTGCTCTTTCTTTCTTTTTCTTTTC 58.895 33.333 0.00 0.00 0.00 2.29
2552 4069 7.812669 TCGTTGCTCTTTCTTTCTTTTTCTTTT 59.187 29.630 0.00 0.00 0.00 2.27
2553 4070 7.312899 TCGTTGCTCTTTCTTTCTTTTTCTTT 58.687 30.769 0.00 0.00 0.00 2.52
2554 4071 6.852664 TCGTTGCTCTTTCTTTCTTTTTCTT 58.147 32.000 0.00 0.00 0.00 2.52
2555 4072 6.436843 TCGTTGCTCTTTCTTTCTTTTTCT 57.563 33.333 0.00 0.00 0.00 2.52
2556 4073 7.432252 TGAATCGTTGCTCTTTCTTTCTTTTTC 59.568 33.333 0.00 0.00 0.00 2.29
2557 4074 7.257722 TGAATCGTTGCTCTTTCTTTCTTTTT 58.742 30.769 0.00 0.00 0.00 1.94
2558 4075 6.795399 TGAATCGTTGCTCTTTCTTTCTTTT 58.205 32.000 0.00 0.00 0.00 2.27
2559 4076 6.377327 TGAATCGTTGCTCTTTCTTTCTTT 57.623 33.333 0.00 0.00 0.00 2.52
2560 4077 6.566197 ATGAATCGTTGCTCTTTCTTTCTT 57.434 33.333 0.00 0.00 0.00 2.52
2561 4078 6.205464 TCAATGAATCGTTGCTCTTTCTTTCT 59.795 34.615 10.18 0.00 31.18 2.52
2562 4079 6.373779 TCAATGAATCGTTGCTCTTTCTTTC 58.626 36.000 10.18 0.00 31.18 2.62
2563 4080 6.317789 TCAATGAATCGTTGCTCTTTCTTT 57.682 33.333 10.18 0.00 31.18 2.52
2564 4081 5.947228 TCAATGAATCGTTGCTCTTTCTT 57.053 34.783 10.18 0.00 31.18 2.52
2565 4082 5.702670 TCTTCAATGAATCGTTGCTCTTTCT 59.297 36.000 10.18 0.00 31.18 2.52
2566 4083 5.931532 TCTTCAATGAATCGTTGCTCTTTC 58.068 37.500 10.18 0.00 31.18 2.62
2567 4084 5.947228 TCTTCAATGAATCGTTGCTCTTT 57.053 34.783 10.18 0.00 31.18 2.52
2568 4085 5.106396 CCTTCTTCAATGAATCGTTGCTCTT 60.106 40.000 10.18 0.00 31.18 2.85
2569 4086 4.394300 CCTTCTTCAATGAATCGTTGCTCT 59.606 41.667 10.18 0.00 31.18 4.09
2570 4087 4.656041 CCTTCTTCAATGAATCGTTGCTC 58.344 43.478 10.18 0.00 31.18 4.26
2571 4088 3.119708 GCCTTCTTCAATGAATCGTTGCT 60.120 43.478 10.18 0.00 31.18 3.91
2572 4089 3.174375 GCCTTCTTCAATGAATCGTTGC 58.826 45.455 10.18 0.00 31.18 4.17
2573 4090 3.191162 TGGCCTTCTTCAATGAATCGTTG 59.809 43.478 8.82 8.82 0.00 4.10
2574 4091 3.420893 TGGCCTTCTTCAATGAATCGTT 58.579 40.909 3.32 0.00 0.00 3.85
2575 4092 3.071874 TGGCCTTCTTCAATGAATCGT 57.928 42.857 3.32 0.00 0.00 3.73
2576 4093 3.191162 TGTTGGCCTTCTTCAATGAATCG 59.809 43.478 3.32 0.00 0.00 3.34
2577 4094 4.741342 CTGTTGGCCTTCTTCAATGAATC 58.259 43.478 3.32 0.00 0.00 2.52
2578 4095 3.056322 GCTGTTGGCCTTCTTCAATGAAT 60.056 43.478 3.32 0.00 34.27 2.57
2579 4096 2.297033 GCTGTTGGCCTTCTTCAATGAA 59.703 45.455 3.32 0.00 34.27 2.57
2580 4097 1.888512 GCTGTTGGCCTTCTTCAATGA 59.111 47.619 3.32 0.00 34.27 2.57
2581 4098 1.891150 AGCTGTTGGCCTTCTTCAATG 59.109 47.619 3.32 0.00 43.05 2.82
2582 4099 1.891150 CAGCTGTTGGCCTTCTTCAAT 59.109 47.619 5.25 0.00 43.05 2.57
2601 4118 1.072266 AAGGGTTGCACCACCTATCA 58.928 50.000 7.49 0.00 41.02 2.15
2610 4127 1.541588 GTGGATCTGAAAGGGTTGCAC 59.458 52.381 0.00 0.00 0.00 4.57
2613 4130 2.162681 GTGGTGGATCTGAAAGGGTTG 58.837 52.381 0.00 0.00 0.00 3.77
2680 4197 0.908198 AAGATGGAGAAGAAGCGGCT 59.092 50.000 0.00 0.00 0.00 5.52
2717 4234 1.375396 CCGGGCGTCACATCTTCAA 60.375 57.895 0.00 0.00 0.00 2.69
2724 4241 0.537653 TTGATTATCCGGGCGTCACA 59.462 50.000 0.00 0.00 0.00 3.58
2725 4242 1.217882 CTTGATTATCCGGGCGTCAC 58.782 55.000 0.00 0.00 0.00 3.67
2726 4243 0.531974 GCTTGATTATCCGGGCGTCA 60.532 55.000 0.00 0.00 0.00 4.35
2727 4244 0.249911 AGCTTGATTATCCGGGCGTC 60.250 55.000 0.00 0.00 0.00 5.19
2728 4245 1.045407 TAGCTTGATTATCCGGGCGT 58.955 50.000 0.00 0.00 0.00 5.68
2729 4246 1.270094 TGTAGCTTGATTATCCGGGCG 60.270 52.381 0.00 0.00 0.00 6.13
2730 4247 2.224305 ACTGTAGCTTGATTATCCGGGC 60.224 50.000 0.00 0.00 0.00 6.13
2731 4248 3.753294 ACTGTAGCTTGATTATCCGGG 57.247 47.619 0.00 0.00 0.00 5.73
2732 4249 5.844004 AGTTACTGTAGCTTGATTATCCGG 58.156 41.667 0.00 0.00 0.00 5.14
2733 4250 6.740110 AGAGTTACTGTAGCTTGATTATCCG 58.260 40.000 5.64 0.00 0.00 4.18
2734 4251 7.947282 AGAGAGTTACTGTAGCTTGATTATCC 58.053 38.462 5.64 0.00 0.00 2.59
2735 4252 9.887406 GTAGAGAGTTACTGTAGCTTGATTATC 57.113 37.037 5.64 0.00 0.00 1.75
2736 4253 9.635404 AGTAGAGAGTTACTGTAGCTTGATTAT 57.365 33.333 5.64 0.00 32.78 1.28
2738 4255 7.948034 AGTAGAGAGTTACTGTAGCTTGATT 57.052 36.000 5.64 0.00 32.78 2.57
2739 4256 9.635404 ATTAGTAGAGAGTTACTGTAGCTTGAT 57.365 33.333 5.64 0.00 35.57 2.57
2740 4257 8.894731 CATTAGTAGAGAGTTACTGTAGCTTGA 58.105 37.037 5.64 0.00 35.57 3.02
2741 4258 8.894731 TCATTAGTAGAGAGTTACTGTAGCTTG 58.105 37.037 5.64 0.00 35.57 4.01
2742 4259 9.463902 TTCATTAGTAGAGAGTTACTGTAGCTT 57.536 33.333 5.64 0.00 35.57 3.74
2743 4260 9.116067 CTTCATTAGTAGAGAGTTACTGTAGCT 57.884 37.037 3.71 3.71 35.57 3.32
2744 4261 7.858879 GCTTCATTAGTAGAGAGTTACTGTAGC 59.141 40.741 0.00 0.00 35.57 3.58
2745 4262 8.347035 GGCTTCATTAGTAGAGAGTTACTGTAG 58.653 40.741 0.00 0.00 35.57 2.74
2746 4263 7.832685 TGGCTTCATTAGTAGAGAGTTACTGTA 59.167 37.037 0.00 0.00 35.57 2.74
2747 4264 6.663953 TGGCTTCATTAGTAGAGAGTTACTGT 59.336 38.462 0.00 0.00 35.57 3.55
2748 4265 6.975772 GTGGCTTCATTAGTAGAGAGTTACTG 59.024 42.308 0.00 0.00 35.57 2.74
2749 4266 6.183360 CGTGGCTTCATTAGTAGAGAGTTACT 60.183 42.308 0.00 0.00 37.61 2.24
2750 4267 5.972382 CGTGGCTTCATTAGTAGAGAGTTAC 59.028 44.000 0.00 0.00 0.00 2.50
2751 4268 5.651139 ACGTGGCTTCATTAGTAGAGAGTTA 59.349 40.000 0.00 0.00 0.00 2.24
2752 4269 4.463186 ACGTGGCTTCATTAGTAGAGAGTT 59.537 41.667 0.00 0.00 0.00 3.01
2753 4270 4.017808 ACGTGGCTTCATTAGTAGAGAGT 58.982 43.478 0.00 0.00 0.00 3.24
2754 4271 4.602995 GACGTGGCTTCATTAGTAGAGAG 58.397 47.826 0.00 0.00 0.00 3.20
2755 4272 3.064958 CGACGTGGCTTCATTAGTAGAGA 59.935 47.826 0.00 0.00 0.00 3.10
2756 4273 3.181499 ACGACGTGGCTTCATTAGTAGAG 60.181 47.826 0.00 0.00 0.00 2.43
2757 4274 2.751259 ACGACGTGGCTTCATTAGTAGA 59.249 45.455 0.00 0.00 0.00 2.59
2758 4275 3.106672 GACGACGTGGCTTCATTAGTAG 58.893 50.000 4.58 0.00 0.00 2.57
2759 4276 2.159338 GGACGACGTGGCTTCATTAGTA 60.159 50.000 4.58 0.00 0.00 1.82
2760 4277 1.403780 GGACGACGTGGCTTCATTAGT 60.404 52.381 4.58 0.00 0.00 2.24
2761 4278 1.278238 GGACGACGTGGCTTCATTAG 58.722 55.000 4.58 0.00 0.00 1.73
2762 4279 0.604073 TGGACGACGTGGCTTCATTA 59.396 50.000 4.58 0.00 0.00 1.90
2763 4280 0.036388 ATGGACGACGTGGCTTCATT 60.036 50.000 4.58 0.00 0.00 2.57
2764 4281 0.740868 CATGGACGACGTGGCTTCAT 60.741 55.000 4.58 0.00 32.27 2.57
2765 4282 1.374125 CATGGACGACGTGGCTTCA 60.374 57.895 4.58 0.00 32.27 3.02
2766 4283 0.460284 ATCATGGACGACGTGGCTTC 60.460 55.000 4.58 0.00 36.71 3.86
2767 4284 0.036388 AATCATGGACGACGTGGCTT 60.036 50.000 4.58 0.00 36.71 4.35
2768 4285 0.821517 TAATCATGGACGACGTGGCT 59.178 50.000 4.58 0.00 36.71 4.75
2769 4286 0.928229 GTAATCATGGACGACGTGGC 59.072 55.000 4.58 0.00 36.71 5.01
2770 4287 1.197055 CGTAATCATGGACGACGTGG 58.803 55.000 4.58 0.00 41.60 4.94
2771 4288 1.197055 CCGTAATCATGGACGACGTG 58.803 55.000 4.58 0.00 41.60 4.49
2772 4289 0.813184 ACCGTAATCATGGACGACGT 59.187 50.000 0.00 0.00 41.60 4.34
2773 4290 1.586578 CAACCGTAATCATGGACGACG 59.413 52.381 14.64 9.42 41.60 5.12
2774 4291 2.613691 ACAACCGTAATCATGGACGAC 58.386 47.619 14.64 0.00 41.60 4.34
2775 4292 3.322211 AACAACCGTAATCATGGACGA 57.678 42.857 14.64 0.00 41.60 4.20
2776 4293 5.121142 AGTTTAACAACCGTAATCATGGACG 59.879 40.000 0.00 8.25 38.79 4.79
2777 4294 6.490566 AGTTTAACAACCGTAATCATGGAC 57.509 37.500 0.00 0.00 34.59 4.02
2778 4295 5.349270 CGAGTTTAACAACCGTAATCATGGA 59.651 40.000 0.00 0.00 34.59 3.41
2779 4296 5.556470 CGAGTTTAACAACCGTAATCATGG 58.444 41.667 0.00 0.00 36.82 3.66
2780 4297 5.019498 GCGAGTTTAACAACCGTAATCATG 58.981 41.667 0.00 0.00 32.70 3.07
2781 4298 4.691685 TGCGAGTTTAACAACCGTAATCAT 59.308 37.500 0.00 0.00 32.70 2.45
2782 4299 4.056740 TGCGAGTTTAACAACCGTAATCA 58.943 39.130 0.00 0.00 32.70 2.57
2783 4300 4.650545 TGCGAGTTTAACAACCGTAATC 57.349 40.909 0.00 0.00 32.70 1.75
2784 4301 5.179742 TCATTGCGAGTTTAACAACCGTAAT 59.820 36.000 11.94 11.94 39.75 1.89
2785 4302 4.510711 TCATTGCGAGTTTAACAACCGTAA 59.489 37.500 0.00 4.50 36.45 3.18
2786 4303 4.056740 TCATTGCGAGTTTAACAACCGTA 58.943 39.130 0.00 0.00 32.70 4.02
2787 4304 2.873472 TCATTGCGAGTTTAACAACCGT 59.127 40.909 0.00 0.00 32.70 4.83
2788 4305 3.529634 TCATTGCGAGTTTAACAACCG 57.470 42.857 0.00 0.00 32.70 4.44
2789 4306 5.457140 TGAATCATTGCGAGTTTAACAACC 58.543 37.500 0.00 0.00 32.70 3.77
2790 4307 6.984740 TTGAATCATTGCGAGTTTAACAAC 57.015 33.333 0.00 0.00 0.00 3.32
2791 4308 6.419413 GGTTTGAATCATTGCGAGTTTAACAA 59.581 34.615 0.00 0.00 0.00 2.83
2792 4309 5.918011 GGTTTGAATCATTGCGAGTTTAACA 59.082 36.000 0.00 0.00 0.00 2.41
2793 4310 5.344933 GGGTTTGAATCATTGCGAGTTTAAC 59.655 40.000 0.00 0.00 0.00 2.01
2794 4311 5.010112 TGGGTTTGAATCATTGCGAGTTTAA 59.990 36.000 0.00 0.00 0.00 1.52
2795 4312 4.520874 TGGGTTTGAATCATTGCGAGTTTA 59.479 37.500 0.00 0.00 0.00 2.01
2796 4313 3.320541 TGGGTTTGAATCATTGCGAGTTT 59.679 39.130 0.00 0.00 0.00 2.66
2797 4314 2.890311 TGGGTTTGAATCATTGCGAGTT 59.110 40.909 0.00 0.00 0.00 3.01
2798 4315 2.228822 GTGGGTTTGAATCATTGCGAGT 59.771 45.455 0.00 0.00 0.00 4.18
2799 4316 2.489329 AGTGGGTTTGAATCATTGCGAG 59.511 45.455 0.00 0.00 0.00 5.03
2800 4317 2.487762 GAGTGGGTTTGAATCATTGCGA 59.512 45.455 0.00 0.00 0.00 5.10
2801 4318 2.228582 TGAGTGGGTTTGAATCATTGCG 59.771 45.455 0.00 0.00 0.00 4.85
2802 4319 3.940209 TGAGTGGGTTTGAATCATTGC 57.060 42.857 0.00 0.00 0.00 3.56
2803 4320 5.786311 ACATTGAGTGGGTTTGAATCATTG 58.214 37.500 0.00 0.00 0.00 2.82
2804 4321 6.041865 TGAACATTGAGTGGGTTTGAATCATT 59.958 34.615 0.00 0.00 0.00 2.57
2805 4322 5.539574 TGAACATTGAGTGGGTTTGAATCAT 59.460 36.000 0.00 0.00 0.00 2.45
2806 4323 4.892345 TGAACATTGAGTGGGTTTGAATCA 59.108 37.500 0.00 0.00 0.00 2.57
2807 4324 5.452078 TGAACATTGAGTGGGTTTGAATC 57.548 39.130 0.00 0.00 0.00 2.52
2808 4325 5.867903 TTGAACATTGAGTGGGTTTGAAT 57.132 34.783 0.00 0.00 0.00 2.57
2809 4326 5.667539 TTTGAACATTGAGTGGGTTTGAA 57.332 34.783 0.00 0.00 0.00 2.69
2810 4327 5.667539 TTTTGAACATTGAGTGGGTTTGA 57.332 34.783 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.