Multiple sequence alignment - TraesCS3A01G340800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G340800 chr3A 100.000 2621 0 0 1 2621 587907253 587904633 0.000000e+00 4841.0
1 TraesCS3A01G340800 chr3A 87.918 1316 104 34 723 2013 587966704 587965419 0.000000e+00 1498.0
2 TraesCS3A01G340800 chr3A 86.679 1111 102 25 696 1791 587884997 587883918 0.000000e+00 1190.0
3 TraesCS3A01G340800 chr3A 91.562 320 19 6 283 601 206445497 206445185 4.010000e-118 435.0
4 TraesCS3A01G340800 chr3A 94.186 172 10 0 145 316 617302121 617301950 2.000000e-66 263.0
5 TraesCS3A01G340800 chr3A 93.976 166 10 0 151 316 614349571 614349406 4.330000e-63 252.0
6 TraesCS3A01G340800 chr3A 97.030 101 3 0 2519 2619 587904995 587904895 1.250000e-38 171.0
7 TraesCS3A01G340800 chr3D 92.210 1181 67 14 845 2013 446110203 446109036 0.000000e+00 1648.0
8 TraesCS3A01G340800 chr3D 88.855 1310 92 32 723 2006 446191982 446190701 0.000000e+00 1561.0
9 TraesCS3A01G340800 chr3D 87.500 1112 99 23 696 1791 446075839 446074752 0.000000e+00 1247.0
10 TraesCS3A01G340800 chr3D 95.522 67 2 1 740 806 446110273 446110208 3.570000e-19 106.0
11 TraesCS3A01G340800 chr3D 91.228 57 1 1 84 136 446076031 446075975 1.010000e-09 75.0
12 TraesCS3A01G340800 chr3B 87.085 1324 102 35 723 2013 585139277 585137990 0.000000e+00 1434.0
13 TraesCS3A01G340800 chr3B 90.289 1071 83 16 948 2013 585023476 585022422 0.000000e+00 1382.0
14 TraesCS3A01G340800 chr3B 87.310 1119 91 29 701 1791 584985467 584984372 0.000000e+00 1232.0
15 TraesCS3A01G340800 chr6A 89.550 555 52 4 144 695 60027457 60028008 0.000000e+00 699.0
16 TraesCS3A01G340800 chr6A 96.071 280 11 0 313 592 9016148 9015869 8.550000e-125 457.0
17 TraesCS3A01G340800 chr6A 93.529 170 11 0 147 316 557412217 557412386 1.200000e-63 254.0
18 TraesCS3A01G340800 chr6A 93.458 107 6 1 590 695 605042255 605042361 9.710000e-35 158.0
19 TraesCS3A01G340800 chrUn 89.130 552 59 1 145 695 319327571 319327020 0.000000e+00 686.0
20 TraesCS3A01G340800 chrUn 92.233 309 21 3 286 593 87719575 87719881 4.010000e-118 435.0
21 TraesCS3A01G340800 chrUn 96.117 103 4 0 2519 2621 67959923 67959821 4.490000e-38 169.0
22 TraesCS3A01G340800 chr4D 91.020 490 41 2 2010 2498 425162502 425162015 0.000000e+00 658.0
23 TraesCS3A01G340800 chr4D 89.130 506 50 4 1998 2499 494795959 494795455 2.210000e-175 625.0
24 TraesCS3A01G340800 chr4D 88.934 497 49 4 2007 2500 318591723 318592216 2.230000e-170 608.0
25 TraesCS3A01G340800 chr4D 84.091 88 14 0 1092 1179 102534314 102534227 4.650000e-13 86.1
26 TraesCS3A01G340800 chr7D 90.184 489 40 5 2012 2499 29204867 29204386 4.760000e-177 630.0
27 TraesCS3A01G340800 chr7D 88.732 497 52 4 2007 2501 580495817 580496311 2.890000e-169 604.0
28 TraesCS3A01G340800 chr7D 96.117 103 4 0 2519 2621 102157031 102157133 4.490000e-38 169.0
29 TraesCS3A01G340800 chr1D 89.409 491 48 3 2010 2499 190761766 190761279 1.330000e-172 616.0
30 TraesCS3A01G340800 chr5B 89.228 492 51 2 2009 2499 10409739 10410229 4.790000e-172 614.0
31 TraesCS3A01G340800 chr5B 81.139 562 80 24 145 693 401658078 401658626 6.700000e-116 427.0
32 TraesCS3A01G340800 chr5B 97.000 100 3 0 2522 2621 6489101 6489002 4.490000e-38 169.0
33 TraesCS3A01G340800 chr4A 89.047 493 51 3 2010 2500 522970069 522970560 2.230000e-170 608.0
34 TraesCS3A01G340800 chr4A 94.012 167 10 0 150 316 599809354 599809188 1.200000e-63 254.0
35 TraesCS3A01G340800 chr4A 96.117 103 4 0 2519 2621 521286930 521286828 4.490000e-38 169.0
36 TraesCS3A01G340800 chr7A 88.732 497 52 4 2004 2499 703809651 703810144 2.890000e-169 604.0
37 TraesCS3A01G340800 chr7A 93.605 172 11 0 145 316 621407026 621407197 9.310000e-65 257.0
38 TraesCS3A01G340800 chr7A 94.393 107 5 1 590 695 3973824 3973930 2.090000e-36 163.0
39 TraesCS3A01G340800 chr7A 94.393 107 5 1 590 695 148983622 148983516 2.090000e-36 163.0
40 TraesCS3A01G340800 chr7A 94.286 105 5 1 590 693 174837424 174837320 2.700000e-35 159.0
41 TraesCS3A01G340800 chr1A 97.509 281 7 0 314 594 444351433 444351153 5.070000e-132 481.0
42 TraesCS3A01G340800 chr2A 97.491 279 7 0 314 592 61973569 61973291 6.560000e-131 477.0
43 TraesCS3A01G340800 chr5A 96.071 280 11 0 309 588 608804595 608804874 8.550000e-125 457.0
44 TraesCS3A01G340800 chr5A 94.393 107 5 1 590 695 609285173 609285067 2.090000e-36 163.0
45 TraesCS3A01G340800 chr5A 92.174 115 6 2 590 703 419514104 419514216 2.700000e-35 159.0
46 TraesCS3A01G340800 chr2B 80.645 279 48 6 147 422 110686110 110686385 7.350000e-51 211.0
47 TraesCS3A01G340800 chr6D 96.117 103 4 0 2519 2621 50959779 50959677 4.490000e-38 169.0
48 TraesCS3A01G340800 chr6B 96.117 103 4 0 2519 2621 417686027 417685925 4.490000e-38 169.0
49 TraesCS3A01G340800 chr5D 96.117 103 4 0 2519 2621 548190626 548190728 4.490000e-38 169.0
50 TraesCS3A01G340800 chr1B 96.117 103 4 0 2519 2621 666001555 666001657 4.490000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G340800 chr3A 587904633 587907253 2620 True 2506 4841 98.515 1 2621 2 chr3A.!!$R6 2620
1 TraesCS3A01G340800 chr3A 587965419 587966704 1285 True 1498 1498 87.918 723 2013 1 chr3A.!!$R3 1290
2 TraesCS3A01G340800 chr3A 587883918 587884997 1079 True 1190 1190 86.679 696 1791 1 chr3A.!!$R2 1095
3 TraesCS3A01G340800 chr3D 446190701 446191982 1281 True 1561 1561 88.855 723 2006 1 chr3D.!!$R1 1283
4 TraesCS3A01G340800 chr3D 446109036 446110273 1237 True 877 1648 93.866 740 2013 2 chr3D.!!$R3 1273
5 TraesCS3A01G340800 chr3D 446074752 446076031 1279 True 661 1247 89.364 84 1791 2 chr3D.!!$R2 1707
6 TraesCS3A01G340800 chr3B 585137990 585139277 1287 True 1434 1434 87.085 723 2013 1 chr3B.!!$R3 1290
7 TraesCS3A01G340800 chr3B 585022422 585023476 1054 True 1382 1382 90.289 948 2013 1 chr3B.!!$R2 1065
8 TraesCS3A01G340800 chr3B 584984372 584985467 1095 True 1232 1232 87.310 701 1791 1 chr3B.!!$R1 1090
9 TraesCS3A01G340800 chr6A 60027457 60028008 551 False 699 699 89.550 144 695 1 chr6A.!!$F1 551
10 TraesCS3A01G340800 chrUn 319327020 319327571 551 True 686 686 89.130 145 695 1 chrUn.!!$R2 550
11 TraesCS3A01G340800 chr4D 494795455 494795959 504 True 625 625 89.130 1998 2499 1 chr4D.!!$R3 501
12 TraesCS3A01G340800 chr5B 401658078 401658626 548 False 427 427 81.139 145 693 1 chr5B.!!$F2 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 596 0.331616 ACTCCCCATTACAACCAGCC 59.668 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1825 1982 0.252103 AGAAACGCAGTAGGGGGAGA 60.252 55.0 0.0 0.0 45.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.708676 CAAAAGTTGTTGATGGAAGAAAAGC 58.291 36.000 0.00 0.00 0.00 3.51
25 26 5.596836 AAGTTGTTGATGGAAGAAAAGCA 57.403 34.783 0.00 0.00 0.00 3.91
26 27 5.192327 AGTTGTTGATGGAAGAAAAGCAG 57.808 39.130 0.00 0.00 0.00 4.24
27 28 3.648339 TGTTGATGGAAGAAAAGCAGC 57.352 42.857 0.00 0.00 0.00 5.25
28 29 2.957680 TGTTGATGGAAGAAAAGCAGCA 59.042 40.909 0.00 0.00 0.00 4.41
29 30 3.005050 TGTTGATGGAAGAAAAGCAGCAG 59.995 43.478 0.00 0.00 0.00 4.24
30 31 2.867624 TGATGGAAGAAAAGCAGCAGT 58.132 42.857 0.00 0.00 0.00 4.40
31 32 4.019792 TGATGGAAGAAAAGCAGCAGTA 57.980 40.909 0.00 0.00 0.00 2.74
32 33 3.753272 TGATGGAAGAAAAGCAGCAGTAC 59.247 43.478 0.00 0.00 0.00 2.73
33 34 3.492102 TGGAAGAAAAGCAGCAGTACT 57.508 42.857 0.00 0.00 0.00 2.73
34 35 3.403038 TGGAAGAAAAGCAGCAGTACTC 58.597 45.455 0.00 0.00 0.00 2.59
35 36 3.071602 TGGAAGAAAAGCAGCAGTACTCT 59.928 43.478 0.00 0.00 0.00 3.24
36 37 3.434984 GGAAGAAAAGCAGCAGTACTCTG 59.565 47.826 14.43 14.43 43.87 3.35
37 38 3.760580 AGAAAAGCAGCAGTACTCTGT 57.239 42.857 17.86 7.43 43.05 3.41
38 39 3.397482 AGAAAAGCAGCAGTACTCTGTG 58.603 45.455 17.86 7.45 43.05 3.66
39 40 3.070159 AGAAAAGCAGCAGTACTCTGTGA 59.930 43.478 17.86 0.00 43.05 3.58
40 41 3.692257 AAAGCAGCAGTACTCTGTGAT 57.308 42.857 17.86 3.28 43.05 3.06
41 42 2.957491 AGCAGCAGTACTCTGTGATC 57.043 50.000 17.86 0.00 43.05 2.92
42 43 2.455557 AGCAGCAGTACTCTGTGATCT 58.544 47.619 17.86 8.33 43.05 2.75
43 44 2.166050 AGCAGCAGTACTCTGTGATCTG 59.834 50.000 17.86 8.12 43.05 2.90
44 45 2.094286 GCAGCAGTACTCTGTGATCTGT 60.094 50.000 17.86 0.00 43.05 3.41
45 46 3.768406 CAGCAGTACTCTGTGATCTGTC 58.232 50.000 11.84 0.00 43.05 3.51
46 47 3.443329 CAGCAGTACTCTGTGATCTGTCT 59.557 47.826 11.84 0.00 43.05 3.41
47 48 4.637977 CAGCAGTACTCTGTGATCTGTCTA 59.362 45.833 11.84 0.00 43.05 2.59
48 49 4.638421 AGCAGTACTCTGTGATCTGTCTAC 59.362 45.833 0.00 0.00 43.05 2.59
49 50 4.638421 GCAGTACTCTGTGATCTGTCTACT 59.362 45.833 0.00 0.00 43.05 2.57
50 51 5.448496 GCAGTACTCTGTGATCTGTCTACTG 60.448 48.000 0.00 3.43 43.05 2.74
51 52 5.065859 CAGTACTCTGTGATCTGTCTACTGG 59.934 48.000 0.00 0.00 36.97 4.00
52 53 2.757868 ACTCTGTGATCTGTCTACTGGC 59.242 50.000 0.00 0.00 0.00 4.85
53 54 2.757314 CTCTGTGATCTGTCTACTGGCA 59.243 50.000 0.00 0.00 0.00 4.92
54 55 2.757314 TCTGTGATCTGTCTACTGGCAG 59.243 50.000 14.16 14.16 0.00 4.85
55 56 2.757314 CTGTGATCTGTCTACTGGCAGA 59.243 50.000 23.66 2.77 44.55 4.26
61 62 4.662468 TCTGTCTACTGGCAGATGATTC 57.338 45.455 23.66 8.08 36.89 2.52
62 63 3.386078 TCTGTCTACTGGCAGATGATTCC 59.614 47.826 23.66 7.44 36.89 3.01
63 64 3.378512 TGTCTACTGGCAGATGATTCCT 58.621 45.455 23.66 0.00 0.00 3.36
64 65 3.386078 TGTCTACTGGCAGATGATTCCTC 59.614 47.826 23.66 6.78 0.00 3.71
65 66 2.968574 TCTACTGGCAGATGATTCCTCC 59.031 50.000 23.66 0.00 0.00 4.30
66 67 1.890552 ACTGGCAGATGATTCCTCCT 58.109 50.000 23.66 0.00 0.00 3.69
67 68 3.051940 ACTGGCAGATGATTCCTCCTA 57.948 47.619 23.66 0.00 0.00 2.94
68 69 3.387962 ACTGGCAGATGATTCCTCCTAA 58.612 45.455 23.66 0.00 0.00 2.69
69 70 3.979347 ACTGGCAGATGATTCCTCCTAAT 59.021 43.478 23.66 0.00 0.00 1.73
70 71 4.414846 ACTGGCAGATGATTCCTCCTAATT 59.585 41.667 23.66 0.00 0.00 1.40
71 72 5.103771 ACTGGCAGATGATTCCTCCTAATTT 60.104 40.000 23.66 0.00 0.00 1.82
72 73 6.101734 ACTGGCAGATGATTCCTCCTAATTTA 59.898 38.462 23.66 0.00 0.00 1.40
73 74 7.095183 TGGCAGATGATTCCTCCTAATTTAT 57.905 36.000 0.00 0.00 0.00 1.40
74 75 7.529555 TGGCAGATGATTCCTCCTAATTTATT 58.470 34.615 0.00 0.00 0.00 1.40
75 76 7.449395 TGGCAGATGATTCCTCCTAATTTATTG 59.551 37.037 0.00 0.00 0.00 1.90
76 77 7.667219 GGCAGATGATTCCTCCTAATTTATTGA 59.333 37.037 0.00 0.00 0.00 2.57
77 78 9.240734 GCAGATGATTCCTCCTAATTTATTGAT 57.759 33.333 0.00 0.00 0.00 2.57
130 135 0.794473 GGGTAACTTCGGTCTTTGCG 59.206 55.000 0.00 0.00 0.00 4.85
136 141 1.901650 CTTCGGTCTTTGCGTCAGCC 61.902 60.000 0.00 0.00 44.33 4.85
138 143 2.357034 GGTCTTTGCGTCAGCCGA 60.357 61.111 0.00 0.00 44.33 5.54
139 144 1.959226 GGTCTTTGCGTCAGCCGAA 60.959 57.895 0.00 0.00 44.33 4.30
140 145 1.298859 GGTCTTTGCGTCAGCCGAAT 61.299 55.000 0.00 0.00 44.33 3.34
141 146 0.517316 GTCTTTGCGTCAGCCGAATT 59.483 50.000 0.00 0.00 44.33 2.17
142 147 1.069227 GTCTTTGCGTCAGCCGAATTT 60.069 47.619 0.00 0.00 44.33 1.82
143 148 2.158841 GTCTTTGCGTCAGCCGAATTTA 59.841 45.455 0.00 0.00 44.33 1.40
173 178 5.535029 TGGTCATAGTGGGGAGTAACTTAT 58.465 41.667 0.00 0.00 0.00 1.73
175 180 7.310634 TGGTCATAGTGGGGAGTAACTTATAT 58.689 38.462 0.00 0.00 0.00 0.86
396 404 9.639563 TTTGATGAGGTGGCATAGAATTAAATA 57.360 29.630 0.00 0.00 0.00 1.40
474 482 1.687660 ACTTTGTGTCATGCATGGCAA 59.312 42.857 34.01 25.74 44.94 4.52
486 494 4.916983 TGCATGGCAATAAATGTAGTCC 57.083 40.909 0.00 0.00 34.76 3.85
487 495 4.535781 TGCATGGCAATAAATGTAGTCCT 58.464 39.130 0.00 0.00 34.76 3.85
488 496 4.955450 TGCATGGCAATAAATGTAGTCCTT 59.045 37.500 0.00 0.00 34.76 3.36
489 497 5.421693 TGCATGGCAATAAATGTAGTCCTTT 59.578 36.000 0.00 0.00 34.76 3.11
490 498 6.605194 TGCATGGCAATAAATGTAGTCCTTTA 59.395 34.615 0.00 0.00 34.76 1.85
491 499 7.287466 TGCATGGCAATAAATGTAGTCCTTTAT 59.713 33.333 0.00 0.00 34.76 1.40
492 500 7.596248 GCATGGCAATAAATGTAGTCCTTTATG 59.404 37.037 0.00 0.00 30.13 1.90
493 501 8.849168 CATGGCAATAAATGTAGTCCTTTATGA 58.151 33.333 0.00 0.00 30.13 2.15
494 502 8.995027 TGGCAATAAATGTAGTCCTTTATGAT 57.005 30.769 0.00 0.00 30.13 2.45
528 536 8.615360 ATGATACTATGCATTAGGGATGTAGT 57.385 34.615 3.54 0.88 38.07 2.73
529 537 9.715119 ATGATACTATGCATTAGGGATGTAGTA 57.285 33.333 3.54 3.44 35.75 1.82
530 538 9.715119 TGATACTATGCATTAGGGATGTAGTAT 57.285 33.333 3.54 8.56 40.10 2.12
538 546 9.769677 TGCATTAGGGATGTAGTATTATAGACT 57.230 33.333 0.00 0.00 38.07 3.24
574 582 8.478066 TGCATGATACTTGTATATGATACTCCC 58.522 37.037 0.00 0.00 0.00 4.30
575 583 7.928706 GCATGATACTTGTATATGATACTCCCC 59.071 40.741 0.00 0.00 0.00 4.81
576 584 8.981659 CATGATACTTGTATATGATACTCCCCA 58.018 37.037 0.00 0.00 0.00 4.96
577 585 9.735362 ATGATACTTGTATATGATACTCCCCAT 57.265 33.333 0.00 0.00 0.00 4.00
578 586 9.560860 TGATACTTGTATATGATACTCCCCATT 57.439 33.333 0.00 0.00 0.00 3.16
581 589 8.736097 ACTTGTATATGATACTCCCCATTACA 57.264 34.615 0.00 0.00 0.00 2.41
582 590 9.166222 ACTTGTATATGATACTCCCCATTACAA 57.834 33.333 0.00 0.00 32.41 2.41
583 591 9.436957 CTTGTATATGATACTCCCCATTACAAC 57.563 37.037 0.00 0.00 31.42 3.32
584 592 7.913789 TGTATATGATACTCCCCATTACAACC 58.086 38.462 0.00 0.00 0.00 3.77
585 593 7.514473 TGTATATGATACTCCCCATTACAACCA 59.486 37.037 0.00 0.00 0.00 3.67
586 594 4.771114 TGATACTCCCCATTACAACCAG 57.229 45.455 0.00 0.00 0.00 4.00
587 595 3.118038 TGATACTCCCCATTACAACCAGC 60.118 47.826 0.00 0.00 0.00 4.85
588 596 0.331616 ACTCCCCATTACAACCAGCC 59.668 55.000 0.00 0.00 0.00 4.85
589 597 0.625849 CTCCCCATTACAACCAGCCT 59.374 55.000 0.00 0.00 0.00 4.58
590 598 1.005924 CTCCCCATTACAACCAGCCTT 59.994 52.381 0.00 0.00 0.00 4.35
591 599 2.241176 CTCCCCATTACAACCAGCCTTA 59.759 50.000 0.00 0.00 0.00 2.69
592 600 2.856231 TCCCCATTACAACCAGCCTTAT 59.144 45.455 0.00 0.00 0.00 1.73
593 601 2.958355 CCCCATTACAACCAGCCTTATG 59.042 50.000 0.00 0.00 0.00 1.90
594 602 3.627237 CCCCATTACAACCAGCCTTATGT 60.627 47.826 0.00 0.00 0.00 2.29
595 603 4.023291 CCCATTACAACCAGCCTTATGTT 58.977 43.478 0.00 0.00 0.00 2.71
596 604 5.197451 CCCATTACAACCAGCCTTATGTTA 58.803 41.667 0.00 0.00 0.00 2.41
597 605 5.833131 CCCATTACAACCAGCCTTATGTTAT 59.167 40.000 0.00 0.00 0.00 1.89
598 606 6.323739 CCCATTACAACCAGCCTTATGTTATT 59.676 38.462 0.00 0.00 0.00 1.40
599 607 7.425606 CCATTACAACCAGCCTTATGTTATTC 58.574 38.462 0.00 0.00 0.00 1.75
600 608 7.425606 CATTACAACCAGCCTTATGTTATTCC 58.574 38.462 0.00 0.00 0.00 3.01
601 609 4.929479 ACAACCAGCCTTATGTTATTCCA 58.071 39.130 0.00 0.00 0.00 3.53
602 610 5.329399 ACAACCAGCCTTATGTTATTCCAA 58.671 37.500 0.00 0.00 0.00 3.53
603 611 5.777732 ACAACCAGCCTTATGTTATTCCAAA 59.222 36.000 0.00 0.00 0.00 3.28
604 612 5.914898 ACCAGCCTTATGTTATTCCAAAC 57.085 39.130 0.00 0.00 0.00 2.93
605 613 5.329399 ACCAGCCTTATGTTATTCCAAACA 58.671 37.500 0.00 0.00 43.16 2.83
607 615 6.096846 ACCAGCCTTATGTTATTCCAAACATC 59.903 38.462 5.55 0.00 44.79 3.06
608 616 6.322201 CCAGCCTTATGTTATTCCAAACATCT 59.678 38.462 5.55 0.00 44.79 2.90
609 617 7.420800 CAGCCTTATGTTATTCCAAACATCTC 58.579 38.462 5.55 0.00 44.79 2.75
610 618 7.284034 CAGCCTTATGTTATTCCAAACATCTCT 59.716 37.037 5.55 0.00 44.79 3.10
611 619 7.500559 AGCCTTATGTTATTCCAAACATCTCTC 59.499 37.037 5.55 0.00 44.79 3.20
612 620 7.500559 GCCTTATGTTATTCCAAACATCTCTCT 59.499 37.037 5.55 0.00 44.79 3.10
613 621 9.050601 CCTTATGTTATTCCAAACATCTCTCTC 57.949 37.037 5.55 0.00 44.79 3.20
614 622 8.964476 TTATGTTATTCCAAACATCTCTCTCC 57.036 34.615 5.55 0.00 44.79 3.71
615 623 6.627087 TGTTATTCCAAACATCTCTCTCCT 57.373 37.500 0.00 0.00 34.50 3.69
616 624 6.644347 TGTTATTCCAAACATCTCTCTCCTC 58.356 40.000 0.00 0.00 34.50 3.71
617 625 6.213397 TGTTATTCCAAACATCTCTCTCCTCA 59.787 38.462 0.00 0.00 34.50 3.86
618 626 5.972327 ATTCCAAACATCTCTCTCCTCAT 57.028 39.130 0.00 0.00 0.00 2.90
619 627 5.768980 TTCCAAACATCTCTCTCCTCATT 57.231 39.130 0.00 0.00 0.00 2.57
620 628 6.874278 TTCCAAACATCTCTCTCCTCATTA 57.126 37.500 0.00 0.00 0.00 1.90
621 629 6.874278 TCCAAACATCTCTCTCCTCATTAA 57.126 37.500 0.00 0.00 0.00 1.40
622 630 7.257790 TCCAAACATCTCTCTCCTCATTAAA 57.742 36.000 0.00 0.00 0.00 1.52
623 631 7.865820 TCCAAACATCTCTCTCCTCATTAAAT 58.134 34.615 0.00 0.00 0.00 1.40
624 632 8.992349 TCCAAACATCTCTCTCCTCATTAAATA 58.008 33.333 0.00 0.00 0.00 1.40
625 633 9.050601 CCAAACATCTCTCTCCTCATTAAATAC 57.949 37.037 0.00 0.00 0.00 1.89
626 634 9.829507 CAAACATCTCTCTCCTCATTAAATACT 57.170 33.333 0.00 0.00 0.00 2.12
628 636 9.829507 AACATCTCTCTCCTCATTAAATACTTG 57.170 33.333 0.00 0.00 0.00 3.16
629 637 7.930865 ACATCTCTCTCCTCATTAAATACTTGC 59.069 37.037 0.00 0.00 0.00 4.01
630 638 6.821388 TCTCTCTCCTCATTAAATACTTGCC 58.179 40.000 0.00 0.00 0.00 4.52
631 639 6.384015 TCTCTCTCCTCATTAAATACTTGCCA 59.616 38.462 0.00 0.00 0.00 4.92
632 640 6.349300 TCTCTCCTCATTAAATACTTGCCAC 58.651 40.000 0.00 0.00 0.00 5.01
633 641 6.061022 TCTCCTCATTAAATACTTGCCACA 57.939 37.500 0.00 0.00 0.00 4.17
634 642 6.662755 TCTCCTCATTAAATACTTGCCACAT 58.337 36.000 0.00 0.00 0.00 3.21
635 643 7.801104 TCTCCTCATTAAATACTTGCCACATA 58.199 34.615 0.00 0.00 0.00 2.29
636 644 8.271458 TCTCCTCATTAAATACTTGCCACATAA 58.729 33.333 0.00 0.00 0.00 1.90
637 645 8.450578 TCCTCATTAAATACTTGCCACATAAG 57.549 34.615 0.00 0.00 0.00 1.73
638 646 8.052748 TCCTCATTAAATACTTGCCACATAAGT 58.947 33.333 0.00 0.00 41.06 2.24
639 647 9.337396 CCTCATTAAATACTTGCCACATAAGTA 57.663 33.333 0.00 0.00 42.77 2.24
647 655 9.855021 AATACTTGCCACATAAGTAAAATTGTC 57.145 29.630 0.00 0.00 42.13 3.18
648 656 7.524717 ACTTGCCACATAAGTAAAATTGTCT 57.475 32.000 0.00 0.00 36.66 3.41
649 657 7.951591 ACTTGCCACATAAGTAAAATTGTCTT 58.048 30.769 0.00 0.00 36.66 3.01
650 658 9.073475 ACTTGCCACATAAGTAAAATTGTCTTA 57.927 29.630 0.00 0.00 36.66 2.10
651 659 9.559958 CTTGCCACATAAGTAAAATTGTCTTAG 57.440 33.333 0.00 0.00 0.00 2.18
652 660 8.050778 TGCCACATAAGTAAAATTGTCTTAGG 57.949 34.615 7.28 7.28 33.56 2.69
653 661 7.885922 TGCCACATAAGTAAAATTGTCTTAGGA 59.114 33.333 12.62 0.00 32.32 2.94
654 662 8.903820 GCCACATAAGTAAAATTGTCTTAGGAT 58.096 33.333 12.62 0.93 32.32 3.24
681 689 9.809096 GTGTTAAGTTACTATCTAAGTTACCCC 57.191 37.037 0.00 0.00 38.28 4.95
682 690 9.545928 TGTTAAGTTACTATCTAAGTTACCCCA 57.454 33.333 0.00 0.00 38.28 4.96
683 691 9.809096 GTTAAGTTACTATCTAAGTTACCCCAC 57.191 37.037 0.00 0.00 38.28 4.61
684 692 9.774071 TTAAGTTACTATCTAAGTTACCCCACT 57.226 33.333 0.00 0.00 38.28 4.00
686 694 9.948747 AAGTTACTATCTAAGTTACCCCACTAT 57.051 33.333 0.00 0.00 38.28 2.12
687 695 9.364653 AGTTACTATCTAAGTTACCCCACTATG 57.635 37.037 0.00 0.00 38.28 2.23
688 696 8.583296 GTTACTATCTAAGTTACCCCACTATGG 58.417 40.741 0.00 0.00 39.80 2.74
689 697 4.976540 ATCTAAGTTACCCCACTATGGC 57.023 45.455 0.00 0.00 35.79 4.40
690 698 4.003584 TCTAAGTTACCCCACTATGGCT 57.996 45.455 0.00 0.00 35.79 4.75
691 699 5.146868 TCTAAGTTACCCCACTATGGCTA 57.853 43.478 0.00 0.00 35.79 3.93
692 700 5.145564 TCTAAGTTACCCCACTATGGCTAG 58.854 45.833 0.00 0.00 35.79 3.42
693 701 2.047830 AGTTACCCCACTATGGCTAGC 58.952 52.381 6.04 6.04 35.79 3.42
694 702 1.071857 GTTACCCCACTATGGCTAGCC 59.928 57.143 27.71 27.71 35.79 3.93
712 720 5.278022 GCTAGCCAGTAATAGCAAACAATCC 60.278 44.000 2.29 0.00 43.17 3.01
809 849 2.831597 GCAACATGCCTTTGCCTTC 58.168 52.632 8.02 0.00 43.02 3.46
811 851 1.270465 GCAACATGCCTTTGCCTTCTT 60.270 47.619 8.02 0.00 43.02 2.52
832 873 1.003718 CCGGTGGACAGTTTCTCCC 60.004 63.158 0.00 0.00 0.00 4.30
833 874 1.374252 CGGTGGACAGTTTCTCCCG 60.374 63.158 0.00 0.00 33.25 5.14
834 875 1.671379 GGTGGACAGTTTCTCCCGC 60.671 63.158 0.00 0.00 0.00 6.13
835 876 1.671379 GTGGACAGTTTCTCCCGCC 60.671 63.158 0.00 0.00 0.00 6.13
836 877 2.046217 GGACAGTTTCTCCCGCCC 60.046 66.667 0.00 0.00 0.00 6.13
860 901 1.445095 GACCATCATGGAGCGAGCT 59.555 57.895 11.90 0.00 40.96 4.09
918 959 0.954452 CTCAGAACCAACCAACAGGC 59.046 55.000 0.00 0.00 0.00 4.85
1512 1642 1.065709 GGGACTGATGTTTTCCGGCTA 60.066 52.381 0.00 0.00 0.00 3.93
1621 1754 2.029623 GCTGGTCCACCGTAGATTAGA 58.970 52.381 0.00 0.00 39.43 2.10
1700 1855 2.156098 CTTGCGCTTAGTTTGGGGTTA 58.844 47.619 9.73 0.00 0.00 2.85
1789 1945 0.617935 TGTTCGATGATGCTCCCCAA 59.382 50.000 0.00 0.00 0.00 4.12
1818 1975 2.634453 AGGTTTTTCTTGGCCAATGGAG 59.366 45.455 20.85 7.32 0.00 3.86
1845 2002 0.175989 CTCCCCCTACTGCGTTTCTC 59.824 60.000 0.00 0.00 0.00 2.87
1849 2006 0.809385 CCCTACTGCGTTTCTCTCGA 59.191 55.000 0.00 0.00 0.00 4.04
1966 2134 2.678190 GCTTGCCAACCTCGAGATAACT 60.678 50.000 15.71 0.00 0.00 2.24
1967 2135 2.961526 TGCCAACCTCGAGATAACTC 57.038 50.000 15.71 0.00 39.54 3.01
1968 2136 2.176045 TGCCAACCTCGAGATAACTCA 58.824 47.619 15.71 1.59 42.72 3.41
1969 2137 2.766263 TGCCAACCTCGAGATAACTCAT 59.234 45.455 15.71 0.00 42.72 2.90
1970 2138 3.958147 TGCCAACCTCGAGATAACTCATA 59.042 43.478 15.71 0.00 42.72 2.15
1971 2139 4.404394 TGCCAACCTCGAGATAACTCATAA 59.596 41.667 15.71 0.00 42.72 1.90
1972 2140 4.745620 GCCAACCTCGAGATAACTCATAAC 59.254 45.833 15.71 0.00 42.72 1.89
1973 2141 5.681437 GCCAACCTCGAGATAACTCATAACA 60.681 44.000 15.71 0.00 42.72 2.41
1974 2142 6.516718 CCAACCTCGAGATAACTCATAACAT 58.483 40.000 15.71 0.00 42.72 2.71
1975 2143 6.642950 CCAACCTCGAGATAACTCATAACATC 59.357 42.308 15.71 0.00 42.72 3.06
1978 2146 7.429633 ACCTCGAGATAACTCATAACATCTTG 58.570 38.462 15.71 0.00 42.72 3.02
1983 2151 8.963130 CGAGATAACTCATAACATCTTGTCTTC 58.037 37.037 0.59 0.00 42.72 2.87
1991 2161 9.258826 CTCATAACATCTTGTCTTCTTCATAGG 57.741 37.037 0.00 0.00 0.00 2.57
1992 2162 8.762645 TCATAACATCTTGTCTTCTTCATAGGT 58.237 33.333 0.00 0.00 0.00 3.08
1994 2164 7.678947 AACATCTTGTCTTCTTCATAGGTTG 57.321 36.000 0.00 0.00 0.00 3.77
2056 2228 0.682292 TCTTACACATCGCCCACACA 59.318 50.000 0.00 0.00 0.00 3.72
2060 2232 1.600636 CACATCGCCCACACACCTT 60.601 57.895 0.00 0.00 0.00 3.50
2064 2236 0.908910 ATCGCCCACACACCTTCATA 59.091 50.000 0.00 0.00 0.00 2.15
2065 2237 0.908910 TCGCCCACACACCTTCATAT 59.091 50.000 0.00 0.00 0.00 1.78
2078 2250 6.151648 CACACCTTCATATCCACTCATTTTGT 59.848 38.462 0.00 0.00 0.00 2.83
2082 2254 6.375174 CCTTCATATCCACTCATTTTGTCACA 59.625 38.462 0.00 0.00 0.00 3.58
2084 2256 7.558161 TCATATCCACTCATTTTGTCACATC 57.442 36.000 0.00 0.00 0.00 3.06
2085 2257 7.111466 TCATATCCACTCATTTTGTCACATCA 58.889 34.615 0.00 0.00 0.00 3.07
2086 2258 7.611079 TCATATCCACTCATTTTGTCACATCAA 59.389 33.333 0.00 0.00 0.00 2.57
2090 2262 6.041511 CCACTCATTTTGTCACATCAAAACA 58.958 36.000 6.72 0.00 45.67 2.83
2101 2273 6.262720 TGTCACATCAAAACAGATGACATCAA 59.737 34.615 17.57 0.00 46.51 2.57
2102 2274 7.140705 GTCACATCAAAACAGATGACATCAAA 58.859 34.615 17.57 0.00 46.51 2.69
2104 2276 8.361889 TCACATCAAAACAGATGACATCAAAAT 58.638 29.630 17.57 0.00 46.51 1.82
2234 2407 4.792068 ACCCCATGTTGATATGTTTCGAT 58.208 39.130 0.00 0.00 0.00 3.59
2235 2408 5.200483 ACCCCATGTTGATATGTTTCGATT 58.800 37.500 0.00 0.00 0.00 3.34
2237 2410 6.262273 ACCCCATGTTGATATGTTTCGATTAC 59.738 38.462 0.00 0.00 0.00 1.89
2238 2411 6.362686 CCCATGTTGATATGTTTCGATTACG 58.637 40.000 0.00 0.00 41.26 3.18
2274 2447 7.039082 ACCTAAAAGTTGCCATGATGTTTACAT 60.039 33.333 0.00 0.00 39.70 2.29
2276 2449 9.853555 CTAAAAGTTGCCATGATGTTTACATTA 57.146 29.630 0.00 0.00 36.57 1.90
2309 2482 5.183014 AGTGCTTAAACTAAAGTTGCCAC 57.817 39.130 0.00 2.64 38.44 5.01
2336 2509 5.807011 GGCAATTTTAGTTTGTAGAGCATGG 59.193 40.000 0.00 0.00 0.00 3.66
2347 2520 7.393234 AGTTTGTAGAGCATGGCAATTTTAGTA 59.607 33.333 0.00 0.00 0.00 1.82
2371 2544 9.941664 GTATTTTGATGATGACAATTCCAGTAG 57.058 33.333 0.00 0.00 0.00 2.57
2376 2549 5.627499 TGATGACAATTCCAGTAGTTTGC 57.373 39.130 0.00 0.00 0.00 3.68
2385 2558 3.838565 TCCAGTAGTTTGCCCATGAAAA 58.161 40.909 0.00 0.00 0.00 2.29
2425 2598 3.214697 TGGCGATTTTAAGTGCATGTG 57.785 42.857 0.00 0.00 0.00 3.21
2432 2605 5.619757 CGATTTTAAGTGCATGTGTCATGGT 60.620 40.000 10.96 0.00 0.00 3.55
2443 2616 7.598493 GTGCATGTGTCATGGTAATTTTAGTTT 59.402 33.333 10.96 0.00 0.00 2.66
2468 2641 3.440522 GGTTCATGGCAAGTCTAGTTTCC 59.559 47.826 0.00 0.00 0.00 3.13
2469 2642 3.350219 TCATGGCAAGTCTAGTTTCCC 57.650 47.619 0.00 0.00 0.00 3.97
2477 2650 4.767409 GCAAGTCTAGTTTCCCAATTTCCT 59.233 41.667 0.00 0.00 0.00 3.36
2478 2651 5.335976 GCAAGTCTAGTTTCCCAATTTCCTG 60.336 44.000 0.00 0.00 0.00 3.86
2533 2706 9.258826 GCAATTTTATATGCCATGATGTTTACA 57.741 29.630 0.00 0.00 36.56 2.41
2536 2709 9.970395 ATTTTATATGCCATGATGTTTACACTG 57.030 29.630 0.00 0.00 0.00 3.66
2537 2710 8.518430 TTTATATGCCATGATGTTTACACTGT 57.482 30.769 0.00 0.00 0.00 3.55
2538 2711 9.620259 TTTATATGCCATGATGTTTACACTGTA 57.380 29.630 0.00 0.00 0.00 2.74
2539 2712 7.734924 ATATGCCATGATGTTTACACTGTAG 57.265 36.000 0.00 0.00 0.00 2.74
2540 2713 4.905429 TGCCATGATGTTTACACTGTAGT 58.095 39.130 0.00 0.00 0.00 2.73
2541 2714 5.312895 TGCCATGATGTTTACACTGTAGTT 58.687 37.500 0.00 0.00 0.00 2.24
2542 2715 5.181056 TGCCATGATGTTTACACTGTAGTTG 59.819 40.000 0.00 0.00 0.00 3.16
2543 2716 5.181245 GCCATGATGTTTACACTGTAGTTGT 59.819 40.000 0.00 0.00 0.00 3.32
2544 2717 6.620733 GCCATGATGTTTACACTGTAGTTGTC 60.621 42.308 0.00 0.00 0.00 3.18
2545 2718 6.426633 CCATGATGTTTACACTGTAGTTGTCA 59.573 38.462 0.00 0.00 0.00 3.58
2546 2719 7.119699 CCATGATGTTTACACTGTAGTTGTCAT 59.880 37.037 0.00 0.00 0.00 3.06
2547 2720 9.150348 CATGATGTTTACACTGTAGTTGTCATA 57.850 33.333 0.00 0.00 0.00 2.15
2548 2721 8.757164 TGATGTTTACACTGTAGTTGTCATAG 57.243 34.615 0.00 0.00 0.00 2.23
2549 2722 8.364894 TGATGTTTACACTGTAGTTGTCATAGT 58.635 33.333 0.00 0.00 0.00 2.12
2550 2723 7.940178 TGTTTACACTGTAGTTGTCATAGTG 57.060 36.000 0.00 0.00 43.20 2.74
2551 2724 6.422701 TGTTTACACTGTAGTTGTCATAGTGC 59.577 38.462 0.00 0.00 41.74 4.40
2552 2725 4.873746 ACACTGTAGTTGTCATAGTGCT 57.126 40.909 0.00 0.00 41.74 4.40
2553 2726 5.215252 ACACTGTAGTTGTCATAGTGCTT 57.785 39.130 0.00 0.00 41.74 3.91
2554 2727 5.230942 ACACTGTAGTTGTCATAGTGCTTC 58.769 41.667 0.00 0.00 41.74 3.86
2555 2728 5.221441 ACACTGTAGTTGTCATAGTGCTTCA 60.221 40.000 0.00 0.00 41.74 3.02
2556 2729 5.696270 CACTGTAGTTGTCATAGTGCTTCAA 59.304 40.000 0.00 0.00 33.28 2.69
2557 2730 5.696724 ACTGTAGTTGTCATAGTGCTTCAAC 59.303 40.000 0.00 0.00 38.69 3.18
2558 2731 5.853936 TGTAGTTGTCATAGTGCTTCAACT 58.146 37.500 12.26 12.26 46.39 3.16
2559 2732 6.988522 TGTAGTTGTCATAGTGCTTCAACTA 58.011 36.000 10.61 10.61 44.11 2.24
2560 2733 7.438564 TGTAGTTGTCATAGTGCTTCAACTAA 58.561 34.615 14.62 6.14 46.08 2.24
2561 2734 7.929245 TGTAGTTGTCATAGTGCTTCAACTAAA 59.071 33.333 14.62 9.06 46.08 1.85
2562 2735 7.426929 AGTTGTCATAGTGCTTCAACTAAAG 57.573 36.000 7.01 0.00 44.11 1.85
2563 2736 6.992715 AGTTGTCATAGTGCTTCAACTAAAGT 59.007 34.615 7.01 0.00 44.11 2.66
2564 2737 7.499232 AGTTGTCATAGTGCTTCAACTAAAGTT 59.501 33.333 7.01 0.00 44.11 2.66
2587 2760 3.712187 CCACGTGGCAATTTTAGTTTGT 58.288 40.909 24.02 0.00 0.00 2.83
2588 2761 4.861210 CCACGTGGCAATTTTAGTTTGTA 58.139 39.130 24.02 0.00 0.00 2.41
2589 2762 4.915085 CCACGTGGCAATTTTAGTTTGTAG 59.085 41.667 24.02 0.00 0.00 2.74
2590 2763 5.278071 CCACGTGGCAATTTTAGTTTGTAGA 60.278 40.000 24.02 0.00 0.00 2.59
2591 2764 5.851177 CACGTGGCAATTTTAGTTTGTAGAG 59.149 40.000 7.95 0.00 0.00 2.43
2592 2765 4.851558 CGTGGCAATTTTAGTTTGTAGAGC 59.148 41.667 0.00 0.00 0.00 4.09
2593 2766 5.561919 CGTGGCAATTTTAGTTTGTAGAGCA 60.562 40.000 0.00 0.00 0.00 4.26
2594 2767 6.389906 GTGGCAATTTTAGTTTGTAGAGCAT 58.610 36.000 0.00 0.00 0.00 3.79
2595 2768 6.308766 GTGGCAATTTTAGTTTGTAGAGCATG 59.691 38.462 0.00 0.00 0.00 4.06
2596 2769 5.807011 GGCAATTTTAGTTTGTAGAGCATGG 59.193 40.000 0.00 0.00 0.00 3.66
2597 2770 5.289434 GCAATTTTAGTTTGTAGAGCATGGC 59.711 40.000 0.00 0.00 0.00 4.40
2598 2771 6.389091 CAATTTTAGTTTGTAGAGCATGGCA 58.611 36.000 0.00 0.00 0.00 4.92
2599 2772 6.588719 ATTTTAGTTTGTAGAGCATGGCAA 57.411 33.333 0.00 0.00 0.00 4.52
2600 2773 6.588719 TTTTAGTTTGTAGAGCATGGCAAT 57.411 33.333 0.00 0.00 0.00 3.56
2601 2774 6.588719 TTTAGTTTGTAGAGCATGGCAATT 57.411 33.333 0.00 0.00 0.00 2.32
2602 2775 6.588719 TTAGTTTGTAGAGCATGGCAATTT 57.411 33.333 0.00 0.00 0.00 1.82
2603 2776 5.473066 AGTTTGTAGAGCATGGCAATTTT 57.527 34.783 0.00 0.00 0.00 1.82
2604 2777 6.588719 AGTTTGTAGAGCATGGCAATTTTA 57.411 33.333 0.00 0.00 0.00 1.52
2605 2778 6.624423 AGTTTGTAGAGCATGGCAATTTTAG 58.376 36.000 0.00 0.00 0.00 1.85
2606 2779 6.209391 AGTTTGTAGAGCATGGCAATTTTAGT 59.791 34.615 0.00 0.00 0.00 2.24
2607 2780 7.393234 AGTTTGTAGAGCATGGCAATTTTAGTA 59.607 33.333 0.00 0.00 0.00 1.82
2608 2781 7.880160 TTGTAGAGCATGGCAATTTTAGTAT 57.120 32.000 0.00 0.00 0.00 2.12
2609 2782 7.880160 TGTAGAGCATGGCAATTTTAGTATT 57.120 32.000 0.00 0.00 0.00 1.89
2610 2783 8.292444 TGTAGAGCATGGCAATTTTAGTATTT 57.708 30.769 0.00 0.00 0.00 1.40
2611 2784 8.748412 TGTAGAGCATGGCAATTTTAGTATTTT 58.252 29.630 0.00 0.00 0.00 1.82
2612 2785 9.023967 GTAGAGCATGGCAATTTTAGTATTTTG 57.976 33.333 0.00 0.00 0.00 2.44
2613 2786 7.839907 AGAGCATGGCAATTTTAGTATTTTGA 58.160 30.769 0.00 0.00 0.00 2.69
2614 2787 8.480501 AGAGCATGGCAATTTTAGTATTTTGAT 58.519 29.630 0.00 0.00 0.00 2.57
2615 2788 8.428186 AGCATGGCAATTTTAGTATTTTGATG 57.572 30.769 0.00 0.00 0.00 3.07
2616 2789 8.259411 AGCATGGCAATTTTAGTATTTTGATGA 58.741 29.630 0.00 0.00 0.00 2.92
2617 2790 9.048446 GCATGGCAATTTTAGTATTTTGATGAT 57.952 29.630 0.00 0.00 0.00 2.45
2619 2792 8.945481 TGGCAATTTTAGTATTTTGATGATGG 57.055 30.769 0.00 0.00 0.00 3.51
2620 2793 7.495279 TGGCAATTTTAGTATTTTGATGATGGC 59.505 33.333 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.313411 TGCTTTTCTTCCATCAACAACTTTTG 59.687 34.615 0.00 0.00 0.00 2.44
1 2 6.405538 TGCTTTTCTTCCATCAACAACTTTT 58.594 32.000 0.00 0.00 0.00 2.27
4 5 4.500375 GCTGCTTTTCTTCCATCAACAACT 60.500 41.667 0.00 0.00 0.00 3.16
5 6 3.737774 GCTGCTTTTCTTCCATCAACAAC 59.262 43.478 0.00 0.00 0.00 3.32
7 8 2.957680 TGCTGCTTTTCTTCCATCAACA 59.042 40.909 0.00 0.00 0.00 3.33
8 9 3.005155 ACTGCTGCTTTTCTTCCATCAAC 59.995 43.478 0.00 0.00 0.00 3.18
11 12 4.006319 AGTACTGCTGCTTTTCTTCCATC 58.994 43.478 0.00 0.00 0.00 3.51
12 13 4.006319 GAGTACTGCTGCTTTTCTTCCAT 58.994 43.478 0.00 0.00 0.00 3.41
13 14 3.071602 AGAGTACTGCTGCTTTTCTTCCA 59.928 43.478 0.00 0.00 0.00 3.53
14 15 3.434984 CAGAGTACTGCTGCTTTTCTTCC 59.565 47.826 0.00 0.00 37.33 3.46
15 16 4.061596 ACAGAGTACTGCTGCTTTTCTTC 58.938 43.478 17.17 0.00 46.95 2.87
16 17 3.812053 CACAGAGTACTGCTGCTTTTCTT 59.188 43.478 17.17 0.39 46.95 2.52
17 18 3.070159 TCACAGAGTACTGCTGCTTTTCT 59.930 43.478 17.17 0.00 46.95 2.52
18 19 3.393800 TCACAGAGTACTGCTGCTTTTC 58.606 45.455 17.17 0.00 46.95 2.29
19 20 3.475566 TCACAGAGTACTGCTGCTTTT 57.524 42.857 17.17 1.73 46.95 2.27
20 21 3.260380 AGATCACAGAGTACTGCTGCTTT 59.740 43.478 17.17 6.68 46.95 3.51
21 22 2.830923 AGATCACAGAGTACTGCTGCTT 59.169 45.455 17.17 6.94 46.95 3.91
22 23 2.166050 CAGATCACAGAGTACTGCTGCT 59.834 50.000 17.17 7.73 46.95 4.24
23 24 2.094286 ACAGATCACAGAGTACTGCTGC 60.094 50.000 17.17 0.00 46.95 5.25
24 25 3.443329 AGACAGATCACAGAGTACTGCTG 59.557 47.826 16.19 16.19 46.95 4.41
25 26 3.696045 AGACAGATCACAGAGTACTGCT 58.304 45.455 0.00 0.00 46.95 4.24
26 27 4.638421 AGTAGACAGATCACAGAGTACTGC 59.362 45.833 0.00 0.00 46.95 4.40
28 29 5.189928 CCAGTAGACAGATCACAGAGTACT 58.810 45.833 0.00 0.00 0.00 2.73
29 30 4.201970 GCCAGTAGACAGATCACAGAGTAC 60.202 50.000 0.00 0.00 0.00 2.73
30 31 3.948473 GCCAGTAGACAGATCACAGAGTA 59.052 47.826 0.00 0.00 0.00 2.59
31 32 2.757868 GCCAGTAGACAGATCACAGAGT 59.242 50.000 0.00 0.00 0.00 3.24
32 33 2.757314 TGCCAGTAGACAGATCACAGAG 59.243 50.000 0.00 0.00 0.00 3.35
33 34 2.757314 CTGCCAGTAGACAGATCACAGA 59.243 50.000 0.00 0.00 35.90 3.41
34 35 2.757314 TCTGCCAGTAGACAGATCACAG 59.243 50.000 0.00 0.00 37.99 3.66
35 36 2.807676 TCTGCCAGTAGACAGATCACA 58.192 47.619 0.00 0.00 37.99 3.58
40 41 3.386078 GGAATCATCTGCCAGTAGACAGA 59.614 47.826 0.00 0.00 46.34 3.41
41 42 3.387374 AGGAATCATCTGCCAGTAGACAG 59.613 47.826 0.00 0.00 35.15 3.51
42 43 3.378512 AGGAATCATCTGCCAGTAGACA 58.621 45.455 0.00 0.00 0.00 3.41
43 44 3.244044 GGAGGAATCATCTGCCAGTAGAC 60.244 52.174 0.00 0.00 0.00 2.59
44 45 2.968574 GGAGGAATCATCTGCCAGTAGA 59.031 50.000 0.00 0.00 0.00 2.59
45 46 2.971330 AGGAGGAATCATCTGCCAGTAG 59.029 50.000 0.00 0.00 0.00 2.57
46 47 3.051940 AGGAGGAATCATCTGCCAGTA 57.948 47.619 0.00 0.00 0.00 2.74
47 48 1.890552 AGGAGGAATCATCTGCCAGT 58.109 50.000 0.00 0.00 0.00 4.00
48 49 4.637387 ATTAGGAGGAATCATCTGCCAG 57.363 45.455 0.00 0.00 0.00 4.85
49 50 5.393068 AAATTAGGAGGAATCATCTGCCA 57.607 39.130 0.00 0.00 0.00 4.92
50 51 7.667219 TCAATAAATTAGGAGGAATCATCTGCC 59.333 37.037 0.00 0.00 0.00 4.85
51 52 8.627208 TCAATAAATTAGGAGGAATCATCTGC 57.373 34.615 0.00 0.00 0.00 4.26
70 71 9.844790 GCTGCTGCATAATATTGTAATCAATAA 57.155 29.630 11.11 0.00 42.31 1.40
71 72 9.012161 TGCTGCTGCATAATATTGTAATCAATA 57.988 29.630 14.93 3.67 44.82 1.90
72 73 7.888424 TGCTGCTGCATAATATTGTAATCAAT 58.112 30.769 14.93 0.00 45.31 2.57
73 74 7.274603 TGCTGCTGCATAATATTGTAATCAA 57.725 32.000 14.93 0.00 45.31 2.57
74 75 6.880942 TGCTGCTGCATAATATTGTAATCA 57.119 33.333 14.93 0.00 45.31 2.57
130 135 5.116882 ACCAGTCTAATAAATTCGGCTGAC 58.883 41.667 9.64 0.00 0.00 3.51
136 141 7.385205 CCCACTATGACCAGTCTAATAAATTCG 59.615 40.741 0.00 0.00 0.00 3.34
138 143 7.349859 TCCCCACTATGACCAGTCTAATAAATT 59.650 37.037 0.00 0.00 0.00 1.82
139 144 6.849697 TCCCCACTATGACCAGTCTAATAAAT 59.150 38.462 0.00 0.00 0.00 1.40
140 145 6.206787 TCCCCACTATGACCAGTCTAATAAA 58.793 40.000 0.00 0.00 0.00 1.40
141 146 5.784023 TCCCCACTATGACCAGTCTAATAA 58.216 41.667 0.00 0.00 0.00 1.40
142 147 5.103215 ACTCCCCACTATGACCAGTCTAATA 60.103 44.000 0.00 0.00 0.00 0.98
143 148 4.227197 CTCCCCACTATGACCAGTCTAAT 58.773 47.826 0.00 0.00 0.00 1.73
175 180 9.301897 AGACTAGTATCATATGCATGACACTAA 57.698 33.333 10.16 0.00 45.11 2.24
396 404 6.365970 TGATACTCAAGCCTCTCTTTCTTT 57.634 37.500 0.00 0.00 31.27 2.52
403 411 7.167924 TCATGATATGATACTCAAGCCTCTC 57.832 40.000 0.00 0.00 33.59 3.20
502 510 9.715119 ACTACATCCCTAATGCATAGTATCATA 57.285 33.333 0.00 0.00 39.12 2.15
503 511 8.615360 ACTACATCCCTAATGCATAGTATCAT 57.385 34.615 0.00 0.00 39.12 2.45
504 512 9.715119 ATACTACATCCCTAATGCATAGTATCA 57.285 33.333 0.00 0.00 36.42 2.15
512 520 9.769677 AGTCTATAATACTACATCCCTAATGCA 57.230 33.333 0.00 0.00 39.12 3.96
548 556 8.478066 GGGAGTATCATATACAAGTATCATGCA 58.522 37.037 0.00 0.00 36.25 3.96
549 557 7.928706 GGGGAGTATCATATACAAGTATCATGC 59.071 40.741 0.00 0.00 36.25 4.06
550 558 8.981659 TGGGGAGTATCATATACAAGTATCATG 58.018 37.037 0.00 0.00 36.25 3.07
551 559 9.735362 ATGGGGAGTATCATATACAAGTATCAT 57.265 33.333 0.00 0.00 36.25 2.45
552 560 9.560860 AATGGGGAGTATCATATACAAGTATCA 57.439 33.333 0.00 0.00 36.25 2.15
555 563 9.831682 TGTAATGGGGAGTATCATATACAAGTA 57.168 33.333 0.33 0.00 36.25 2.24
556 564 8.736097 TGTAATGGGGAGTATCATATACAAGT 57.264 34.615 0.33 0.00 36.25 3.16
557 565 9.436957 GTTGTAATGGGGAGTATCATATACAAG 57.563 37.037 0.00 0.00 36.25 3.16
558 566 8.380099 GGTTGTAATGGGGAGTATCATATACAA 58.620 37.037 0.33 0.00 36.25 2.41
559 567 7.514473 TGGTTGTAATGGGGAGTATCATATACA 59.486 37.037 0.33 0.00 36.25 2.29
560 568 7.913789 TGGTTGTAATGGGGAGTATCATATAC 58.086 38.462 0.00 0.00 36.25 1.47
561 569 7.311046 GCTGGTTGTAATGGGGAGTATCATATA 60.311 40.741 0.00 0.00 36.25 0.86
562 570 6.522459 GCTGGTTGTAATGGGGAGTATCATAT 60.522 42.308 0.00 0.00 36.25 1.78
563 571 5.221843 GCTGGTTGTAATGGGGAGTATCATA 60.222 44.000 0.00 0.00 36.25 2.15
564 572 4.446311 GCTGGTTGTAATGGGGAGTATCAT 60.446 45.833 0.00 0.00 36.25 2.45
565 573 3.118038 GCTGGTTGTAATGGGGAGTATCA 60.118 47.826 0.00 0.00 36.25 2.15
566 574 3.477530 GCTGGTTGTAATGGGGAGTATC 58.522 50.000 0.00 0.00 0.00 2.24
567 575 2.174854 GGCTGGTTGTAATGGGGAGTAT 59.825 50.000 0.00 0.00 0.00 2.12
568 576 1.562475 GGCTGGTTGTAATGGGGAGTA 59.438 52.381 0.00 0.00 0.00 2.59
569 577 0.331616 GGCTGGTTGTAATGGGGAGT 59.668 55.000 0.00 0.00 0.00 3.85
570 578 0.625849 AGGCTGGTTGTAATGGGGAG 59.374 55.000 0.00 0.00 0.00 4.30
571 579 1.080638 AAGGCTGGTTGTAATGGGGA 58.919 50.000 0.00 0.00 0.00 4.81
572 580 2.818751 TAAGGCTGGTTGTAATGGGG 57.181 50.000 0.00 0.00 0.00 4.96
573 581 3.631250 ACATAAGGCTGGTTGTAATGGG 58.369 45.455 0.00 0.00 0.00 4.00
574 582 6.959639 ATAACATAAGGCTGGTTGTAATGG 57.040 37.500 9.04 0.00 0.00 3.16
575 583 7.068103 TGGAATAACATAAGGCTGGTTGTAATG 59.932 37.037 9.04 0.00 0.00 1.90
576 584 7.122715 TGGAATAACATAAGGCTGGTTGTAAT 58.877 34.615 9.04 0.00 0.00 1.89
577 585 6.486056 TGGAATAACATAAGGCTGGTTGTAA 58.514 36.000 9.04 0.00 0.00 2.41
578 586 6.068461 TGGAATAACATAAGGCTGGTTGTA 57.932 37.500 9.04 0.00 0.00 2.41
579 587 4.929479 TGGAATAACATAAGGCTGGTTGT 58.071 39.130 9.04 1.44 0.00 3.32
580 588 5.913137 TTGGAATAACATAAGGCTGGTTG 57.087 39.130 9.04 0.88 0.00 3.77
581 589 5.777732 TGTTTGGAATAACATAAGGCTGGTT 59.222 36.000 0.00 0.00 33.31 3.67
582 590 5.329399 TGTTTGGAATAACATAAGGCTGGT 58.671 37.500 0.00 0.00 33.31 4.00
583 591 5.913137 TGTTTGGAATAACATAAGGCTGG 57.087 39.130 0.00 0.00 33.31 4.85
584 592 7.284034 AGAGATGTTTGGAATAACATAAGGCTG 59.716 37.037 2.29 0.00 45.98 4.85
585 593 7.349598 AGAGATGTTTGGAATAACATAAGGCT 58.650 34.615 2.29 0.00 45.98 4.58
586 594 7.500559 AGAGAGATGTTTGGAATAACATAAGGC 59.499 37.037 2.29 0.00 45.98 4.35
587 595 8.970859 AGAGAGATGTTTGGAATAACATAAGG 57.029 34.615 2.29 0.00 45.98 2.69
588 596 9.050601 GGAGAGAGATGTTTGGAATAACATAAG 57.949 37.037 2.29 0.00 45.98 1.73
589 597 8.772250 AGGAGAGAGATGTTTGGAATAACATAA 58.228 33.333 2.29 0.00 45.98 1.90
590 598 8.324191 AGGAGAGAGATGTTTGGAATAACATA 57.676 34.615 2.29 0.00 45.98 2.29
592 600 6.213397 TGAGGAGAGAGATGTTTGGAATAACA 59.787 38.462 0.00 0.00 41.81 2.41
593 601 6.644347 TGAGGAGAGAGATGTTTGGAATAAC 58.356 40.000 0.00 0.00 0.00 1.89
594 602 6.874278 TGAGGAGAGAGATGTTTGGAATAA 57.126 37.500 0.00 0.00 0.00 1.40
595 603 7.443302 AATGAGGAGAGAGATGTTTGGAATA 57.557 36.000 0.00 0.00 0.00 1.75
596 604 5.972327 ATGAGGAGAGAGATGTTTGGAAT 57.028 39.130 0.00 0.00 0.00 3.01
597 605 5.768980 AATGAGGAGAGAGATGTTTGGAA 57.231 39.130 0.00 0.00 0.00 3.53
598 606 6.874278 TTAATGAGGAGAGAGATGTTTGGA 57.126 37.500 0.00 0.00 0.00 3.53
599 607 9.050601 GTATTTAATGAGGAGAGAGATGTTTGG 57.949 37.037 0.00 0.00 0.00 3.28
600 608 9.829507 AGTATTTAATGAGGAGAGAGATGTTTG 57.170 33.333 0.00 0.00 0.00 2.93
602 610 9.829507 CAAGTATTTAATGAGGAGAGAGATGTT 57.170 33.333 0.00 0.00 0.00 2.71
603 611 7.930865 GCAAGTATTTAATGAGGAGAGAGATGT 59.069 37.037 0.00 0.00 0.00 3.06
604 612 7.387397 GGCAAGTATTTAATGAGGAGAGAGATG 59.613 40.741 0.00 0.00 0.00 2.90
605 613 7.071698 TGGCAAGTATTTAATGAGGAGAGAGAT 59.928 37.037 0.00 0.00 0.00 2.75
606 614 6.384015 TGGCAAGTATTTAATGAGGAGAGAGA 59.616 38.462 0.00 0.00 0.00 3.10
607 615 6.481644 GTGGCAAGTATTTAATGAGGAGAGAG 59.518 42.308 0.00 0.00 0.00 3.20
608 616 6.070251 TGTGGCAAGTATTTAATGAGGAGAGA 60.070 38.462 0.00 0.00 0.00 3.10
609 617 6.115446 TGTGGCAAGTATTTAATGAGGAGAG 58.885 40.000 0.00 0.00 0.00 3.20
610 618 6.061022 TGTGGCAAGTATTTAATGAGGAGA 57.939 37.500 0.00 0.00 0.00 3.71
611 619 6.949352 ATGTGGCAAGTATTTAATGAGGAG 57.051 37.500 0.00 0.00 0.00 3.69
612 620 8.052748 ACTTATGTGGCAAGTATTTAATGAGGA 58.947 33.333 0.00 0.00 34.50 3.71
613 621 8.225603 ACTTATGTGGCAAGTATTTAATGAGG 57.774 34.615 0.00 0.00 34.50 3.86
621 629 9.855021 GACAATTTTACTTATGTGGCAAGTATT 57.145 29.630 0.00 0.00 38.08 1.89
622 630 9.243105 AGACAATTTTACTTATGTGGCAAGTAT 57.757 29.630 0.00 0.00 38.08 2.12
623 631 8.630054 AGACAATTTTACTTATGTGGCAAGTA 57.370 30.769 0.00 0.00 37.42 2.24
624 632 7.524717 AGACAATTTTACTTATGTGGCAAGT 57.475 32.000 0.00 0.00 39.50 3.16
625 633 9.559958 CTAAGACAATTTTACTTATGTGGCAAG 57.440 33.333 0.00 0.00 0.00 4.01
626 634 8.519526 CCTAAGACAATTTTACTTATGTGGCAA 58.480 33.333 0.00 0.00 0.00 4.52
627 635 7.885922 TCCTAAGACAATTTTACTTATGTGGCA 59.114 33.333 0.00 0.00 0.00 4.92
628 636 8.276252 TCCTAAGACAATTTTACTTATGTGGC 57.724 34.615 0.00 0.00 0.00 5.01
655 663 9.809096 GGGGTAACTTAGATAGTAACTTAACAC 57.191 37.037 0.00 0.00 35.54 3.32
656 664 9.545928 TGGGGTAACTTAGATAGTAACTTAACA 57.454 33.333 0.00 0.00 35.54 2.41
657 665 9.809096 GTGGGGTAACTTAGATAGTAACTTAAC 57.191 37.037 0.00 0.00 35.54 2.01
658 666 9.774071 AGTGGGGTAACTTAGATAGTAACTTAA 57.226 33.333 0.00 0.00 35.54 1.85
660 668 9.948747 ATAGTGGGGTAACTTAGATAGTAACTT 57.051 33.333 0.00 0.00 35.54 2.66
661 669 9.364653 CATAGTGGGGTAACTTAGATAGTAACT 57.635 37.037 0.00 0.00 35.54 2.24
662 670 8.583296 CCATAGTGGGGTAACTTAGATAGTAAC 58.417 40.741 0.00 0.00 32.28 2.50
663 671 7.234166 GCCATAGTGGGGTAACTTAGATAGTAA 59.766 40.741 0.00 0.00 38.19 2.24
664 672 6.723052 GCCATAGTGGGGTAACTTAGATAGTA 59.277 42.308 0.00 0.00 38.19 1.82
665 673 5.543020 GCCATAGTGGGGTAACTTAGATAGT 59.457 44.000 0.00 0.00 38.19 2.12
666 674 5.780793 AGCCATAGTGGGGTAACTTAGATAG 59.219 44.000 0.00 0.00 38.19 2.08
667 675 5.723355 AGCCATAGTGGGGTAACTTAGATA 58.277 41.667 0.00 0.00 38.19 1.98
668 676 4.567857 AGCCATAGTGGGGTAACTTAGAT 58.432 43.478 0.00 0.00 38.19 1.98
669 677 4.003584 AGCCATAGTGGGGTAACTTAGA 57.996 45.455 0.00 0.00 38.19 2.10
670 678 4.262506 GCTAGCCATAGTGGGGTAACTTAG 60.263 50.000 2.29 0.00 40.18 2.18
671 679 3.644738 GCTAGCCATAGTGGGGTAACTTA 59.355 47.826 2.29 0.00 40.18 2.24
672 680 2.438392 GCTAGCCATAGTGGGGTAACTT 59.562 50.000 2.29 0.00 40.18 2.66
673 681 2.047830 GCTAGCCATAGTGGGGTAACT 58.952 52.381 2.29 0.00 40.18 2.24
674 682 1.071857 GGCTAGCCATAGTGGGGTAAC 59.928 57.143 29.33 0.00 40.18 2.50
675 683 1.344598 TGGCTAGCCATAGTGGGGTAA 60.345 52.381 32.88 5.00 41.89 2.85
676 684 0.266453 TGGCTAGCCATAGTGGGGTA 59.734 55.000 32.88 5.59 41.89 3.69
677 685 1.004230 TGGCTAGCCATAGTGGGGT 59.996 57.895 32.88 0.00 41.89 4.95
678 686 1.056700 ACTGGCTAGCCATAGTGGGG 61.057 60.000 35.93 23.85 46.15 4.96
679 687 1.717032 TACTGGCTAGCCATAGTGGG 58.283 55.000 35.93 24.56 46.15 4.61
680 688 4.621747 GCTATTACTGGCTAGCCATAGTGG 60.622 50.000 35.93 25.28 46.15 4.00
681 689 4.021104 TGCTATTACTGGCTAGCCATAGTG 60.021 45.833 35.93 25.65 46.15 2.74
682 690 4.160329 TGCTATTACTGGCTAGCCATAGT 58.840 43.478 35.93 30.55 46.15 2.12
683 691 4.808414 TGCTATTACTGGCTAGCCATAG 57.192 45.455 35.93 30.83 46.15 2.23
684 692 5.163248 TGTTTGCTATTACTGGCTAGCCATA 60.163 40.000 35.93 24.90 46.15 2.74
685 693 4.137543 GTTTGCTATTACTGGCTAGCCAT 58.862 43.478 35.93 25.88 46.15 4.40
686 694 3.054728 TGTTTGCTATTACTGGCTAGCCA 60.055 43.478 33.82 33.82 45.02 4.75
687 695 3.541632 TGTTTGCTATTACTGGCTAGCC 58.458 45.455 27.71 27.71 39.68 3.93
688 696 5.278022 GGATTGTTTGCTATTACTGGCTAGC 60.278 44.000 6.04 6.04 40.60 3.42
689 697 5.822519 TGGATTGTTTGCTATTACTGGCTAG 59.177 40.000 0.00 0.00 0.00 3.42
690 698 5.750524 TGGATTGTTTGCTATTACTGGCTA 58.249 37.500 0.00 0.00 0.00 3.93
691 699 4.599041 TGGATTGTTTGCTATTACTGGCT 58.401 39.130 0.00 0.00 0.00 4.75
692 700 4.981806 TGGATTGTTTGCTATTACTGGC 57.018 40.909 0.00 0.00 0.00 4.85
693 701 6.698008 TCATGGATTGTTTGCTATTACTGG 57.302 37.500 0.00 0.00 0.00 4.00
694 702 9.888878 CTTATCATGGATTGTTTGCTATTACTG 57.111 33.333 0.00 0.00 0.00 2.74
733 741 2.231478 TGCTTAACGACCTCTTCCTCAG 59.769 50.000 0.00 0.00 0.00 3.35
809 849 0.310854 GAAACTGTCCACCGGCAAAG 59.689 55.000 0.00 0.00 0.00 2.77
811 851 0.534203 GAGAAACTGTCCACCGGCAA 60.534 55.000 0.00 0.00 0.00 4.52
834 875 4.935495 CATGATGGTCCGGCCGGG 62.935 72.222 42.36 24.68 41.21 5.73
835 876 4.935495 CCATGATGGTCCGGCCGG 62.935 72.222 39.13 39.13 41.21 6.13
836 877 3.814615 CTCCATGATGGTCCGGCCG 62.815 68.421 21.04 21.04 39.03 6.13
843 884 1.145598 CAGCTCGCTCCATGATGGT 59.854 57.895 11.87 0.00 39.03 3.55
860 901 7.232127 GGTAGGCTGTAGTTATATACAAGTCCA 59.768 40.741 0.00 0.00 35.32 4.02
946 995 4.514577 CGGACAGGCGGTAGCTGG 62.515 72.222 0.00 0.00 44.37 4.85
1086 1204 3.394874 CACACCGTCAGCGTCGTG 61.395 66.667 0.00 0.00 36.70 4.35
1488 1618 1.606994 CGGAAAACATCAGTCCCGACA 60.607 52.381 0.00 0.00 39.31 4.35
1633 1766 7.878608 ACTAAATCGAGACGTAATAACAAACG 58.121 34.615 0.00 0.00 44.47 3.60
1700 1855 4.766891 CCATCACAATTTGTACTCCAACCT 59.233 41.667 0.86 0.00 31.20 3.50
1783 1939 7.449247 CAAGAAAAACCTCATAATTTTGGGGA 58.551 34.615 20.35 0.00 39.89 4.81
1789 1945 6.432403 TGGCCAAGAAAAACCTCATAATTT 57.568 33.333 0.61 0.00 0.00 1.82
1818 1975 1.307084 AGTAGGGGGAGACAAGGCC 60.307 63.158 0.00 0.00 0.00 5.19
1825 1982 0.252103 AGAAACGCAGTAGGGGGAGA 60.252 55.000 0.00 0.00 45.00 3.71
1966 2134 8.762645 ACCTATGAAGAAGACAAGATGTTATGA 58.237 33.333 0.00 0.00 0.00 2.15
1967 2135 8.954950 ACCTATGAAGAAGACAAGATGTTATG 57.045 34.615 0.00 0.00 0.00 1.90
1968 2136 9.388506 CAACCTATGAAGAAGACAAGATGTTAT 57.611 33.333 0.00 0.00 0.00 1.89
1969 2137 8.375506 ACAACCTATGAAGAAGACAAGATGTTA 58.624 33.333 0.00 0.00 0.00 2.41
1970 2138 7.227156 ACAACCTATGAAGAAGACAAGATGTT 58.773 34.615 0.00 0.00 0.00 2.71
1971 2139 6.773638 ACAACCTATGAAGAAGACAAGATGT 58.226 36.000 0.00 0.00 0.00 3.06
1972 2140 7.102346 AGACAACCTATGAAGAAGACAAGATG 58.898 38.462 0.00 0.00 0.00 2.90
1973 2141 7.251321 AGACAACCTATGAAGAAGACAAGAT 57.749 36.000 0.00 0.00 0.00 2.40
1974 2142 6.672266 AGACAACCTATGAAGAAGACAAGA 57.328 37.500 0.00 0.00 0.00 3.02
1975 2143 6.931281 TCAAGACAACCTATGAAGAAGACAAG 59.069 38.462 0.00 0.00 0.00 3.16
1978 2146 7.327214 AGATCAAGACAACCTATGAAGAAGAC 58.673 38.462 0.00 0.00 0.00 3.01
1983 2151 8.449397 CAAAGAAGATCAAGACAACCTATGAAG 58.551 37.037 0.00 0.00 0.00 3.02
1985 2155 7.679783 TCAAAGAAGATCAAGACAACCTATGA 58.320 34.615 0.00 0.00 0.00 2.15
1986 2156 7.912056 TCAAAGAAGATCAAGACAACCTATG 57.088 36.000 0.00 0.00 0.00 2.23
2034 2206 1.277842 TGTGGGCGATGTGTAAGATGT 59.722 47.619 0.00 0.00 0.00 3.06
2041 2213 2.281484 GGTGTGTGGGCGATGTGT 60.281 61.111 0.00 0.00 0.00 3.72
2056 2228 6.375455 GTGACAAAATGAGTGGATATGAAGGT 59.625 38.462 0.00 0.00 0.00 3.50
2060 2232 7.111466 TGATGTGACAAAATGAGTGGATATGA 58.889 34.615 0.00 0.00 0.00 2.15
2064 2236 6.653526 TTTGATGTGACAAAATGAGTGGAT 57.346 33.333 0.00 0.00 36.92 3.41
2065 2237 6.127507 TGTTTTGATGTGACAAAATGAGTGGA 60.128 34.615 0.00 0.00 46.44 4.02
2078 2250 6.880942 TTGATGTCATCTGTTTTGATGTGA 57.119 33.333 13.90 0.00 43.03 3.58
2082 2254 9.938280 ATTCATTTTGATGTCATCTGTTTTGAT 57.062 25.926 13.90 0.00 0.00 2.57
2084 2256 9.419297 AGATTCATTTTGATGTCATCTGTTTTG 57.581 29.630 13.90 5.89 0.00 2.44
2085 2257 9.991906 AAGATTCATTTTGATGTCATCTGTTTT 57.008 25.926 13.90 0.00 0.00 2.43
2086 2258 9.991906 AAAGATTCATTTTGATGTCATCTGTTT 57.008 25.926 13.90 0.12 0.00 2.83
2168 2340 6.592220 TCGAGACGATTTAATGGTGAAAATGA 59.408 34.615 0.00 0.00 0.00 2.57
2170 2342 6.772078 GTCGAGACGATTTAATGGTGAAAAT 58.228 36.000 0.00 0.00 38.42 1.82
2256 2429 9.236691 CAACTATAATGTAAACATCATGGCAAC 57.763 33.333 0.00 0.00 35.10 4.17
2309 2482 4.851558 GCTCTACAAACTAAAATTGCCACG 59.148 41.667 0.00 0.00 0.00 4.94
2347 2520 8.585471 ACTACTGGAATTGTCATCATCAAAAT 57.415 30.769 0.00 0.00 0.00 1.82
2359 2532 3.237268 TGGGCAAACTACTGGAATTGT 57.763 42.857 0.00 0.00 0.00 2.71
2407 2580 3.820689 TGACACATGCACTTAAAATCGC 58.179 40.909 0.00 0.00 0.00 4.58
2409 2582 5.713025 ACCATGACACATGCACTTAAAATC 58.287 37.500 0.00 0.00 0.00 2.17
2432 2605 9.868277 CTTGCCATGAACCATAAACTAAAATTA 57.132 29.630 0.00 0.00 0.00 1.40
2443 2616 5.435686 AACTAGACTTGCCATGAACCATA 57.564 39.130 0.00 0.00 0.00 2.74
2507 2680 9.258826 TGTAAACATCATGGCATATAAAATTGC 57.741 29.630 0.00 0.00 38.14 3.56
2510 2683 9.970395 CAGTGTAAACATCATGGCATATAAAAT 57.030 29.630 0.00 0.00 0.00 1.82
2511 2684 8.965819 ACAGTGTAAACATCATGGCATATAAAA 58.034 29.630 0.00 0.00 0.00 1.52
2512 2685 8.518430 ACAGTGTAAACATCATGGCATATAAA 57.482 30.769 0.00 0.00 0.00 1.40
2513 2686 9.271828 CTACAGTGTAAACATCATGGCATATAA 57.728 33.333 0.00 0.00 0.00 0.98
2514 2687 8.428852 ACTACAGTGTAAACATCATGGCATATA 58.571 33.333 0.00 0.00 0.00 0.86
2515 2688 7.282585 ACTACAGTGTAAACATCATGGCATAT 58.717 34.615 0.00 0.00 0.00 1.78
2516 2689 6.649155 ACTACAGTGTAAACATCATGGCATA 58.351 36.000 0.00 0.00 0.00 3.14
2517 2690 5.500234 ACTACAGTGTAAACATCATGGCAT 58.500 37.500 4.21 0.00 0.00 4.40
2518 2691 4.905429 ACTACAGTGTAAACATCATGGCA 58.095 39.130 4.21 0.00 0.00 4.92
2519 2692 5.181245 ACAACTACAGTGTAAACATCATGGC 59.819 40.000 4.21 0.00 0.00 4.40
2520 2693 6.426633 TGACAACTACAGTGTAAACATCATGG 59.573 38.462 4.21 0.00 0.00 3.66
2521 2694 7.420184 TGACAACTACAGTGTAAACATCATG 57.580 36.000 4.21 0.00 0.00 3.07
2522 2695 9.371136 CTATGACAACTACAGTGTAAACATCAT 57.629 33.333 17.28 17.28 0.00 2.45
2523 2696 8.364894 ACTATGACAACTACAGTGTAAACATCA 58.635 33.333 4.21 6.89 0.00 3.07
2524 2697 8.648097 CACTATGACAACTACAGTGTAAACATC 58.352 37.037 4.21 1.53 33.53 3.06
2525 2698 7.117812 GCACTATGACAACTACAGTGTAAACAT 59.882 37.037 4.21 8.06 39.03 2.71
2526 2699 6.422701 GCACTATGACAACTACAGTGTAAACA 59.577 38.462 4.21 1.55 39.03 2.83
2527 2700 6.645415 AGCACTATGACAACTACAGTGTAAAC 59.355 38.462 4.21 0.00 39.03 2.01
2528 2701 6.755206 AGCACTATGACAACTACAGTGTAAA 58.245 36.000 4.21 0.00 39.03 2.01
2529 2702 6.340962 AGCACTATGACAACTACAGTGTAA 57.659 37.500 4.21 0.00 39.03 2.41
2530 2703 5.977489 AGCACTATGACAACTACAGTGTA 57.023 39.130 2.36 2.36 39.03 2.90
2531 2704 4.873746 AGCACTATGACAACTACAGTGT 57.126 40.909 0.00 0.00 39.03 3.55
2532 2705 5.230182 TGAAGCACTATGACAACTACAGTG 58.770 41.667 0.00 0.00 39.65 3.66
2533 2706 5.468540 TGAAGCACTATGACAACTACAGT 57.531 39.130 0.00 0.00 0.00 3.55
2534 2707 5.928839 AGTTGAAGCACTATGACAACTACAG 59.071 40.000 0.00 0.00 45.64 2.74
2535 2708 5.853936 AGTTGAAGCACTATGACAACTACA 58.146 37.500 0.00 0.00 45.64 2.74
2536 2709 7.884816 TTAGTTGAAGCACTATGACAACTAC 57.115 36.000 14.63 0.00 46.40 2.73
2537 2710 8.148351 ACTTTAGTTGAAGCACTATGACAACTA 58.852 33.333 0.00 0.00 45.64 2.24
2539 2712 7.190920 ACTTTAGTTGAAGCACTATGACAAC 57.809 36.000 0.00 0.00 40.37 3.32
2540 2713 7.801716 AACTTTAGTTGAAGCACTATGACAA 57.198 32.000 0.00 0.00 36.80 3.18
2566 2739 3.712187 ACAAACTAAAATTGCCACGTGG 58.288 40.909 30.66 30.66 38.53 4.94
2567 2740 5.753744 TCTACAAACTAAAATTGCCACGTG 58.246 37.500 9.08 9.08 0.00 4.49
2568 2741 5.562113 GCTCTACAAACTAAAATTGCCACGT 60.562 40.000 0.00 0.00 0.00 4.49
2569 2742 4.851558 GCTCTACAAACTAAAATTGCCACG 59.148 41.667 0.00 0.00 0.00 4.94
2570 2743 5.768317 TGCTCTACAAACTAAAATTGCCAC 58.232 37.500 0.00 0.00 0.00 5.01
2571 2744 6.389091 CATGCTCTACAAACTAAAATTGCCA 58.611 36.000 0.00 0.00 0.00 4.92
2572 2745 5.807011 CCATGCTCTACAAACTAAAATTGCC 59.193 40.000 0.00 0.00 0.00 4.52
2573 2746 5.289434 GCCATGCTCTACAAACTAAAATTGC 59.711 40.000 0.00 0.00 0.00 3.56
2574 2747 6.389091 TGCCATGCTCTACAAACTAAAATTG 58.611 36.000 0.00 0.00 0.00 2.32
2575 2748 6.588719 TGCCATGCTCTACAAACTAAAATT 57.411 33.333 0.00 0.00 0.00 1.82
2576 2749 6.588719 TTGCCATGCTCTACAAACTAAAAT 57.411 33.333 0.00 0.00 0.00 1.82
2577 2750 6.588719 ATTGCCATGCTCTACAAACTAAAA 57.411 33.333 0.00 0.00 0.00 1.52
2578 2751 6.588719 AATTGCCATGCTCTACAAACTAAA 57.411 33.333 0.00 0.00 0.00 1.85
2579 2752 6.588719 AAATTGCCATGCTCTACAAACTAA 57.411 33.333 0.00 0.00 0.00 2.24
2580 2753 6.588719 AAAATTGCCATGCTCTACAAACTA 57.411 33.333 0.00 0.00 0.00 2.24
2581 2754 5.473066 AAAATTGCCATGCTCTACAAACT 57.527 34.783 0.00 0.00 0.00 2.66
2582 2755 6.389906 ACTAAAATTGCCATGCTCTACAAAC 58.610 36.000 0.00 0.00 0.00 2.93
2583 2756 6.588719 ACTAAAATTGCCATGCTCTACAAA 57.411 33.333 0.00 0.00 0.00 2.83
2584 2757 7.880160 ATACTAAAATTGCCATGCTCTACAA 57.120 32.000 0.00 0.00 0.00 2.41
2585 2758 7.880160 AATACTAAAATTGCCATGCTCTACA 57.120 32.000 0.00 0.00 0.00 2.74
2586 2759 9.023967 CAAAATACTAAAATTGCCATGCTCTAC 57.976 33.333 0.00 0.00 0.00 2.59
2587 2760 8.965819 TCAAAATACTAAAATTGCCATGCTCTA 58.034 29.630 0.00 0.00 0.00 2.43
2588 2761 7.839907 TCAAAATACTAAAATTGCCATGCTCT 58.160 30.769 0.00 0.00 0.00 4.09
2589 2762 8.545420 CATCAAAATACTAAAATTGCCATGCTC 58.455 33.333 0.00 0.00 0.00 4.26
2590 2763 8.259411 TCATCAAAATACTAAAATTGCCATGCT 58.741 29.630 0.00 0.00 0.00 3.79
2591 2764 8.422973 TCATCAAAATACTAAAATTGCCATGC 57.577 30.769 0.00 0.00 0.00 4.06
2593 2766 9.550406 CCATCATCAAAATACTAAAATTGCCAT 57.450 29.630 0.00 0.00 0.00 4.40
2594 2767 7.495279 GCCATCATCAAAATACTAAAATTGCCA 59.505 33.333 0.00 0.00 0.00 4.92
2595 2768 7.854534 GCCATCATCAAAATACTAAAATTGCC 58.145 34.615 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.