Multiple sequence alignment - TraesCS3A01G340700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G340700 chr3A 100.000 2741 0 0 1 2741 587885830 587883090 0.000000e+00 5062.0
1 TraesCS3A01G340700 chr3A 86.679 1111 102 25 834 1913 587906558 587905463 0.000000e+00 1190.0
2 TraesCS3A01G340700 chr3A 84.622 1086 89 51 876 1914 587966689 587965635 0.000000e+00 1009.0
3 TraesCS3A01G340700 chr3A 94.018 652 25 12 1 639 412718576 412719226 0.000000e+00 976.0
4 TraesCS3A01G340700 chr3A 93.865 652 26 12 1 639 412725866 412726516 0.000000e+00 970.0
5 TraesCS3A01G340700 chr3B 88.475 1987 116 38 771 2702 584985538 584983610 0.000000e+00 2296.0
6 TraesCS3A01G340700 chr3B 84.258 1099 85 48 867 1913 585139271 585138209 0.000000e+00 990.0
7 TraesCS3A01G340700 chr3B 86.914 810 67 25 1119 1913 585023426 585022641 0.000000e+00 872.0
8 TraesCS3A01G340700 chr3B 90.196 51 5 0 2691 2741 584983585 584983535 1.760000e-07 67.6
9 TraesCS3A01G340700 chr3D 88.877 1906 113 39 834 2703 446075839 446073997 0.000000e+00 2254.0
10 TraesCS3A01G340700 chr3D 85.189 1087 83 48 876 1913 446191966 446190909 0.000000e+00 1044.0
11 TraesCS3A01G340700 chr3D 86.289 970 80 31 976 1913 446110205 446109257 0.000000e+00 1005.0
12 TraesCS3A01G340700 chr3D 97.101 69 1 1 878 946 446110273 446110206 6.200000e-22 115.0
13 TraesCS3A01G340700 chr7A 94.769 650 21 7 1 639 431881329 431881976 0.000000e+00 1000.0
14 TraesCS3A01G340700 chr7A 94.769 650 21 7 1 639 431888380 431889027 0.000000e+00 1000.0
15 TraesCS3A01G340700 chr7A 94.018 652 24 9 1 639 199630492 199629843 0.000000e+00 974.0
16 TraesCS3A01G340700 chr5A 94.009 651 25 12 1 639 148264939 148264291 0.000000e+00 974.0
17 TraesCS3A01G340700 chr5A 93.856 651 26 11 1 639 25194970 25195618 0.000000e+00 968.0
18 TraesCS3A01G340700 chr5A 93.578 654 28 12 1 642 148257642 148256991 0.000000e+00 963.0
19 TraesCS3A01G340700 chr2A 93.981 648 28 9 1 639 291558318 291557673 0.000000e+00 970.0
20 TraesCS3A01G340700 chr1D 79.820 555 78 27 1203 1728 400956451 400955902 9.270000e-100 374.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G340700 chr3A 587883090 587885830 2740 True 5062.0 5062 100.0000 1 2741 1 chr3A.!!$R1 2740
1 TraesCS3A01G340700 chr3A 587905463 587906558 1095 True 1190.0 1190 86.6790 834 1913 1 chr3A.!!$R2 1079
2 TraesCS3A01G340700 chr3A 587965635 587966689 1054 True 1009.0 1009 84.6220 876 1914 1 chr3A.!!$R3 1038
3 TraesCS3A01G340700 chr3A 412718576 412719226 650 False 976.0 976 94.0180 1 639 1 chr3A.!!$F1 638
4 TraesCS3A01G340700 chr3A 412725866 412726516 650 False 970.0 970 93.8650 1 639 1 chr3A.!!$F2 638
5 TraesCS3A01G340700 chr3B 584983535 584985538 2003 True 1181.8 2296 89.3355 771 2741 2 chr3B.!!$R3 1970
6 TraesCS3A01G340700 chr3B 585138209 585139271 1062 True 990.0 990 84.2580 867 1913 1 chr3B.!!$R2 1046
7 TraesCS3A01G340700 chr3B 585022641 585023426 785 True 872.0 872 86.9140 1119 1913 1 chr3B.!!$R1 794
8 TraesCS3A01G340700 chr3D 446073997 446075839 1842 True 2254.0 2254 88.8770 834 2703 1 chr3D.!!$R1 1869
9 TraesCS3A01G340700 chr3D 446190909 446191966 1057 True 1044.0 1044 85.1890 876 1913 1 chr3D.!!$R2 1037
10 TraesCS3A01G340700 chr3D 446109257 446110273 1016 True 560.0 1005 91.6950 878 1913 2 chr3D.!!$R3 1035
11 TraesCS3A01G340700 chr7A 431881329 431881976 647 False 1000.0 1000 94.7690 1 639 1 chr7A.!!$F1 638
12 TraesCS3A01G340700 chr7A 431888380 431889027 647 False 1000.0 1000 94.7690 1 639 1 chr7A.!!$F2 638
13 TraesCS3A01G340700 chr7A 199629843 199630492 649 True 974.0 974 94.0180 1 639 1 chr7A.!!$R1 638
14 TraesCS3A01G340700 chr5A 148264291 148264939 648 True 974.0 974 94.0090 1 639 1 chr5A.!!$R2 638
15 TraesCS3A01G340700 chr5A 25194970 25195618 648 False 968.0 968 93.8560 1 639 1 chr5A.!!$F1 638
16 TraesCS3A01G340700 chr5A 148256991 148257642 651 True 963.0 963 93.5780 1 642 1 chr5A.!!$R1 641
17 TraesCS3A01G340700 chr2A 291557673 291558318 645 True 970.0 970 93.9810 1 639 1 chr2A.!!$R1 638
18 TraesCS3A01G340700 chr1D 400955902 400956451 549 True 374.0 374 79.8200 1203 1728 1 chr1D.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 849 0.179174 GCGGCCGAGTTTGTTATTGG 60.179 55.0 33.48 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 2359 0.182061 ACGGCGTCCCTGTCTAGATA 59.818 55.0 6.77 0.0 0.0 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 8.531146 TCATGTGAATCTCAACATGTTACTCTA 58.469 33.333 11.53 0.00 37.28 2.43
276 290 9.095065 CTTTACGCAAAACTATAACCATAGAGT 57.905 33.333 0.00 0.00 38.03 3.24
463 484 1.178276 ACTTTGCCGTTGGTGTTGAA 58.822 45.000 0.00 0.00 0.00 2.69
611 635 4.383552 GGGATGACACTTAAGCACAGAGAT 60.384 45.833 1.29 0.00 0.00 2.75
622 646 7.395489 ACTTAAGCACAGAGATTTGATCCATTT 59.605 33.333 1.29 0.00 0.00 2.32
642 666 1.180029 GGGTCAGGTCGCTACAGTTA 58.820 55.000 0.00 0.00 0.00 2.24
643 667 1.134560 GGGTCAGGTCGCTACAGTTAG 59.865 57.143 0.00 0.00 0.00 2.34
644 668 1.817447 GGTCAGGTCGCTACAGTTAGT 59.183 52.381 0.00 0.00 0.00 2.24
645 669 2.415625 GGTCAGGTCGCTACAGTTAGTG 60.416 54.545 0.00 0.00 37.19 2.74
646 670 2.228343 GTCAGGTCGCTACAGTTAGTGT 59.772 50.000 0.00 0.00 43.86 3.55
647 671 2.228103 TCAGGTCGCTACAGTTAGTGTG 59.772 50.000 2.52 0.00 40.69 3.82
648 672 1.544691 AGGTCGCTACAGTTAGTGTGG 59.455 52.381 2.52 0.63 40.69 4.17
649 673 1.271656 GGTCGCTACAGTTAGTGTGGT 59.728 52.381 2.52 0.00 40.69 4.16
650 674 2.288640 GGTCGCTACAGTTAGTGTGGTT 60.289 50.000 2.52 0.00 40.69 3.67
651 675 2.985139 GTCGCTACAGTTAGTGTGGTTC 59.015 50.000 2.52 0.00 40.69 3.62
652 676 2.889045 TCGCTACAGTTAGTGTGGTTCT 59.111 45.455 2.52 0.00 40.69 3.01
653 677 2.987149 CGCTACAGTTAGTGTGGTTCTG 59.013 50.000 2.52 0.00 40.69 3.02
654 678 3.552273 CGCTACAGTTAGTGTGGTTCTGT 60.552 47.826 2.52 0.00 40.69 3.41
655 679 3.741344 GCTACAGTTAGTGTGGTTCTGTG 59.259 47.826 2.52 0.00 40.69 3.66
656 680 3.906720 ACAGTTAGTGTGGTTCTGTGT 57.093 42.857 0.00 0.00 38.28 3.72
657 681 5.508489 GCTACAGTTAGTGTGGTTCTGTGTA 60.508 44.000 2.52 0.00 40.69 2.90
658 682 5.347620 ACAGTTAGTGTGGTTCTGTGTAA 57.652 39.130 0.00 0.00 38.28 2.41
659 683 5.736813 ACAGTTAGTGTGGTTCTGTGTAAA 58.263 37.500 0.00 0.00 38.28 2.01
660 684 5.583457 ACAGTTAGTGTGGTTCTGTGTAAAC 59.417 40.000 0.00 0.00 38.28 2.01
661 685 5.583061 CAGTTAGTGTGGTTCTGTGTAAACA 59.417 40.000 0.00 0.00 0.00 2.83
662 686 6.092944 CAGTTAGTGTGGTTCTGTGTAAACAA 59.907 38.462 0.00 0.00 0.00 2.83
663 687 6.655848 AGTTAGTGTGGTTCTGTGTAAACAAA 59.344 34.615 0.00 0.00 0.00 2.83
664 688 5.560966 AGTGTGGTTCTGTGTAAACAAAG 57.439 39.130 0.00 0.00 32.43 2.77
665 689 5.250200 AGTGTGGTTCTGTGTAAACAAAGA 58.750 37.500 0.00 0.00 38.39 2.52
666 690 5.354234 AGTGTGGTTCTGTGTAAACAAAGAG 59.646 40.000 3.33 0.00 40.96 2.85
667 691 4.638421 TGTGGTTCTGTGTAAACAAAGAGG 59.362 41.667 3.33 0.00 40.96 3.69
668 692 4.638865 GTGGTTCTGTGTAAACAAAGAGGT 59.361 41.667 3.33 0.00 40.96 3.85
669 693 4.879545 TGGTTCTGTGTAAACAAAGAGGTC 59.120 41.667 3.33 0.16 40.96 3.85
670 694 4.879545 GGTTCTGTGTAAACAAAGAGGTCA 59.120 41.667 3.33 0.00 40.96 4.02
671 695 5.531287 GGTTCTGTGTAAACAAAGAGGTCAT 59.469 40.000 3.33 0.00 40.96 3.06
672 696 6.708949 GGTTCTGTGTAAACAAAGAGGTCATA 59.291 38.462 3.33 0.00 40.96 2.15
673 697 7.227910 GGTTCTGTGTAAACAAAGAGGTCATAA 59.772 37.037 3.33 0.00 40.96 1.90
674 698 7.962964 TCTGTGTAAACAAAGAGGTCATAAG 57.037 36.000 0.00 0.00 35.39 1.73
675 699 7.506114 TCTGTGTAAACAAAGAGGTCATAAGT 58.494 34.615 0.00 0.00 35.39 2.24
676 700 7.990886 TCTGTGTAAACAAAGAGGTCATAAGTT 59.009 33.333 0.00 0.00 35.39 2.66
677 701 8.514330 TGTGTAAACAAAGAGGTCATAAGTTT 57.486 30.769 0.00 0.00 0.00 2.66
678 702 8.617809 TGTGTAAACAAAGAGGTCATAAGTTTC 58.382 33.333 0.00 0.00 0.00 2.78
679 703 8.837389 GTGTAAACAAAGAGGTCATAAGTTTCT 58.163 33.333 0.00 0.00 0.00 2.52
684 708 9.660180 AACAAAGAGGTCATAAGTTTCTATCTC 57.340 33.333 0.00 0.00 0.00 2.75
685 709 8.261522 ACAAAGAGGTCATAAGTTTCTATCTCC 58.738 37.037 0.00 0.00 0.00 3.71
686 710 8.482128 CAAAGAGGTCATAAGTTTCTATCTCCT 58.518 37.037 0.00 0.00 0.00 3.69
687 711 8.616799 AAGAGGTCATAAGTTTCTATCTCCTT 57.383 34.615 0.00 0.00 0.00 3.36
688 712 8.616799 AGAGGTCATAAGTTTCTATCTCCTTT 57.383 34.615 0.00 0.00 0.00 3.11
689 713 8.482128 AGAGGTCATAAGTTTCTATCTCCTTTG 58.518 37.037 0.00 0.00 0.00 2.77
690 714 8.380742 AGGTCATAAGTTTCTATCTCCTTTGA 57.619 34.615 0.00 0.00 0.00 2.69
691 715 8.997734 AGGTCATAAGTTTCTATCTCCTTTGAT 58.002 33.333 0.00 0.00 0.00 2.57
713 737 9.451002 TTGATATGTTTAAAAGGATTGTACCGA 57.549 29.630 0.00 0.00 34.73 4.69
714 738 9.451002 TGATATGTTTAAAAGGATTGTACCGAA 57.549 29.630 0.00 0.00 34.73 4.30
715 739 9.931210 GATATGTTTAAAAGGATTGTACCGAAG 57.069 33.333 0.00 0.00 34.73 3.79
716 740 6.004408 TGTTTAAAAGGATTGTACCGAAGC 57.996 37.500 0.00 0.00 34.73 3.86
717 741 5.531659 TGTTTAAAAGGATTGTACCGAAGCA 59.468 36.000 0.00 0.00 34.73 3.91
718 742 5.873179 TTAAAAGGATTGTACCGAAGCAG 57.127 39.130 0.00 0.00 34.73 4.24
719 743 3.695830 AAAGGATTGTACCGAAGCAGA 57.304 42.857 0.00 0.00 34.73 4.26
720 744 3.695830 AAGGATTGTACCGAAGCAGAA 57.304 42.857 0.00 0.00 34.73 3.02
721 745 3.252974 AGGATTGTACCGAAGCAGAAG 57.747 47.619 0.00 0.00 34.73 2.85
722 746 1.666189 GGATTGTACCGAAGCAGAAGC 59.334 52.381 0.00 0.00 42.56 3.86
723 747 4.947449 AGGATTGTACCGAAGCAGAAGCT 61.947 47.826 0.00 0.00 43.72 3.74
724 748 5.655633 AGGATTGTACCGAAGCAGAAGCTA 61.656 45.833 0.00 0.00 42.12 3.32
725 749 7.408709 AGGATTGTACCGAAGCAGAAGCTAG 62.409 48.000 0.00 0.00 42.12 3.42
734 758 1.714794 GCAGAAGCTAGCTTTCGTGA 58.285 50.000 29.84 0.00 36.26 4.35
735 759 1.658095 GCAGAAGCTAGCTTTCGTGAG 59.342 52.381 29.84 16.55 36.26 3.51
736 760 2.672478 GCAGAAGCTAGCTTTCGTGAGA 60.672 50.000 29.84 0.00 36.26 3.27
737 761 3.779759 CAGAAGCTAGCTTTCGTGAGAT 58.220 45.455 29.84 5.38 41.60 2.75
738 762 3.796178 CAGAAGCTAGCTTTCGTGAGATC 59.204 47.826 29.84 14.52 41.60 2.75
739 763 2.880963 AGCTAGCTTTCGTGAGATCC 57.119 50.000 12.68 0.00 41.60 3.36
740 764 2.383855 AGCTAGCTTTCGTGAGATCCT 58.616 47.619 12.68 0.00 41.60 3.24
741 765 3.556999 AGCTAGCTTTCGTGAGATCCTA 58.443 45.455 12.68 0.00 41.60 2.94
742 766 4.148838 AGCTAGCTTTCGTGAGATCCTAT 58.851 43.478 12.68 0.00 41.60 2.57
743 767 5.317808 AGCTAGCTTTCGTGAGATCCTATA 58.682 41.667 12.68 0.00 41.60 1.31
744 768 5.182380 AGCTAGCTTTCGTGAGATCCTATAC 59.818 44.000 12.68 0.00 41.60 1.47
745 769 5.182380 GCTAGCTTTCGTGAGATCCTATACT 59.818 44.000 7.70 0.00 41.60 2.12
746 770 6.372103 GCTAGCTTTCGTGAGATCCTATACTA 59.628 42.308 7.70 0.00 41.60 1.82
747 771 6.811253 AGCTTTCGTGAGATCCTATACTAG 57.189 41.667 0.00 0.00 41.60 2.57
748 772 6.300703 AGCTTTCGTGAGATCCTATACTAGT 58.699 40.000 0.00 0.00 41.60 2.57
749 773 6.773685 AGCTTTCGTGAGATCCTATACTAGTT 59.226 38.462 0.00 0.00 41.60 2.24
750 774 7.285858 AGCTTTCGTGAGATCCTATACTAGTTT 59.714 37.037 0.00 0.00 41.60 2.66
751 775 7.592164 GCTTTCGTGAGATCCTATACTAGTTTC 59.408 40.741 0.00 0.00 41.60 2.78
752 776 7.507733 TTCGTGAGATCCTATACTAGTTTCC 57.492 40.000 0.00 0.00 41.60 3.13
753 777 6.002704 TCGTGAGATCCTATACTAGTTTCCC 58.997 44.000 0.00 0.00 33.31 3.97
754 778 6.005198 CGTGAGATCCTATACTAGTTTCCCT 58.995 44.000 0.00 0.00 0.00 4.20
755 779 6.490721 CGTGAGATCCTATACTAGTTTCCCTT 59.509 42.308 0.00 0.00 0.00 3.95
756 780 7.664731 CGTGAGATCCTATACTAGTTTCCCTTA 59.335 40.741 0.00 0.00 0.00 2.69
757 781 9.364653 GTGAGATCCTATACTAGTTTCCCTTAA 57.635 37.037 0.00 0.00 0.00 1.85
758 782 9.947189 TGAGATCCTATACTAGTTTCCCTTAAA 57.053 33.333 0.00 0.00 0.00 1.52
767 791 7.997773 ACTAGTTTCCCTTAAATTCAAGTCC 57.002 36.000 0.00 0.00 0.00 3.85
768 792 7.756614 ACTAGTTTCCCTTAAATTCAAGTCCT 58.243 34.615 0.00 0.00 0.00 3.85
769 793 7.883833 ACTAGTTTCCCTTAAATTCAAGTCCTC 59.116 37.037 0.00 0.00 0.00 3.71
776 800 6.071896 CCCTTAAATTCAAGTCCTCAAGTTCC 60.072 42.308 0.00 0.00 0.00 3.62
789 813 4.319177 CTCAAGTTCCTGAGGGTAACTTG 58.681 47.826 27.27 27.27 46.77 3.16
804 828 3.947910 AACTTGGGTCTTTGCATCATG 57.052 42.857 0.00 0.00 0.00 3.07
825 849 0.179174 GCGGCCGAGTTTGTTATTGG 60.179 55.000 33.48 0.00 0.00 3.16
857 884 9.847706 ATAGTAGTAGCAAACAATCGATGATAG 57.152 33.333 0.00 0.00 0.00 2.08
989 1028 1.004440 GCCGGTCCATCATAGAGCC 60.004 63.158 1.90 0.00 0.00 4.70
1102 1151 4.069232 CCGCCTGTCCGCTCTCAA 62.069 66.667 0.00 0.00 0.00 3.02
1103 1152 2.185350 CGCCTGTCCGCTCTCAAT 59.815 61.111 0.00 0.00 0.00 2.57
1105 1154 1.699656 CGCCTGTCCGCTCTCAATTG 61.700 60.000 0.00 0.00 0.00 2.32
1109 1177 0.391661 TGTCCGCTCTCAATTGCTCC 60.392 55.000 0.00 0.00 0.00 4.70
1114 1192 1.869767 CGCTCTCAATTGCTCCATACC 59.130 52.381 0.00 0.00 0.00 2.73
1776 1900 3.531934 TCATCGGAGTACGTCTCAGTA 57.468 47.619 14.26 4.59 44.40 2.74
1780 1904 3.388308 TCGGAGTACGTCTCAGTATAGC 58.612 50.000 14.26 0.00 44.40 2.97
1841 1970 1.804748 GGTTGGAATTGAGACCGTGTC 59.195 52.381 0.00 0.00 0.00 3.67
1843 1972 0.963225 TGGAATTGAGACCGTGTCGA 59.037 50.000 0.00 0.00 37.67 4.20
1846 1975 1.846782 GAATTGAGACCGTGTCGATCG 59.153 52.381 9.36 9.36 37.67 3.69
1848 1977 1.092348 TTGAGACCGTGTCGATCGAT 58.908 50.000 22.50 4.16 37.67 3.59
1849 1978 0.377203 TGAGACCGTGTCGATCGATG 59.623 55.000 22.50 13.87 37.67 3.84
1930 2062 6.183360 CCTCCAAATCAATCGCATATACGTAC 60.183 42.308 0.00 0.00 0.00 3.67
1931 2063 6.217294 TCCAAATCAATCGCATATACGTACA 58.783 36.000 0.00 0.00 0.00 2.90
1935 2067 8.643752 CAAATCAATCGCATATACGTACATACA 58.356 33.333 0.00 0.00 0.00 2.29
1978 2110 2.548057 TGATGTCTTTTTGGTCTGTCGC 59.452 45.455 0.00 0.00 0.00 5.19
1992 2124 3.797256 GTCTGTCGCTGTGTACATATTCC 59.203 47.826 0.00 0.00 0.00 3.01
1996 2128 4.081917 TGTCGCTGTGTACATATTCCTTCA 60.082 41.667 0.00 0.00 0.00 3.02
1999 2131 5.753438 TCGCTGTGTACATATTCCTTCAATC 59.247 40.000 0.00 0.00 0.00 2.67
2000 2132 5.050091 CGCTGTGTACATATTCCTTCAATCC 60.050 44.000 0.00 0.00 0.00 3.01
2047 2185 1.688772 TCTGTATACGGTCCTCAGCC 58.311 55.000 11.47 0.00 0.00 4.85
2097 2235 3.150848 TGTCTTGTACAGAGCGCTATG 57.849 47.619 29.28 29.28 33.01 2.23
2110 2248 2.535984 AGCGCTATGTCGATCTTTTTCG 59.464 45.455 8.99 0.00 40.46 3.46
2111 2249 2.880456 CGCTATGTCGATCTTTTTCGC 58.120 47.619 0.00 0.00 38.97 4.70
2112 2250 2.347661 CGCTATGTCGATCTTTTTCGCC 60.348 50.000 0.00 0.00 38.97 5.54
2113 2251 2.607635 GCTATGTCGATCTTTTTCGCCA 59.392 45.455 0.00 0.00 38.97 5.69
2114 2252 3.248602 GCTATGTCGATCTTTTTCGCCAT 59.751 43.478 0.00 0.00 40.41 4.40
2115 2253 3.951979 ATGTCGATCTTTTTCGCCATC 57.048 42.857 0.00 0.00 32.82 3.51
2116 2254 2.972625 TGTCGATCTTTTTCGCCATCT 58.027 42.857 0.00 0.00 38.97 2.90
2117 2255 3.334691 TGTCGATCTTTTTCGCCATCTT 58.665 40.909 0.00 0.00 38.97 2.40
2118 2256 3.751175 TGTCGATCTTTTTCGCCATCTTT 59.249 39.130 0.00 0.00 38.97 2.52
2119 2257 4.215399 TGTCGATCTTTTTCGCCATCTTTT 59.785 37.500 0.00 0.00 38.97 2.27
2120 2258 5.154222 GTCGATCTTTTTCGCCATCTTTTT 58.846 37.500 0.00 0.00 38.97 1.94
2121 2259 5.283953 GTCGATCTTTTTCGCCATCTTTTTC 59.716 40.000 0.00 0.00 38.97 2.29
2122 2260 5.049060 TCGATCTTTTTCGCCATCTTTTTCA 60.049 36.000 0.00 0.00 38.97 2.69
2123 2261 5.801947 CGATCTTTTTCGCCATCTTTTTCAT 59.198 36.000 0.00 0.00 31.60 2.57
2124 2262 6.966632 CGATCTTTTTCGCCATCTTTTTCATA 59.033 34.615 0.00 0.00 31.60 2.15
2163 2301 1.275657 CGATTCGCATTACGTGGCC 59.724 57.895 0.00 0.00 44.19 5.36
2164 2302 1.647084 GATTCGCATTACGTGGCCC 59.353 57.895 0.00 0.00 44.19 5.80
2195 2333 2.283298 GGCATCTTTGATTCTCGAGCA 58.717 47.619 7.81 0.00 0.00 4.26
2199 2337 4.556523 GCATCTTTGATTCTCGAGCAAAAC 59.443 41.667 7.81 0.00 31.87 2.43
2201 2339 4.055360 TCTTTGATTCTCGAGCAAAACGA 58.945 39.130 7.81 4.95 38.11 3.85
2204 2342 3.849911 TGATTCTCGAGCAAAACGATCT 58.150 40.909 7.81 0.00 39.02 2.75
2205 2343 3.859961 TGATTCTCGAGCAAAACGATCTC 59.140 43.478 7.81 0.00 39.02 2.75
2221 2359 3.620488 GATCTCCGAGATAGCCAGAGAT 58.380 50.000 11.00 5.08 44.81 2.75
2236 2374 4.006989 CCAGAGATATCTAGACAGGGACG 58.993 52.174 4.89 0.00 0.00 4.79
2250 2388 3.824510 GACGCCGTTTCTCGTCGC 61.825 66.667 0.00 0.00 44.76 5.19
2255 2393 1.945776 GCCGTTTCTCGTCGCTTCTG 61.946 60.000 0.00 0.00 37.94 3.02
2314 2452 4.889427 GAAACATTTCCCGGCTGC 57.111 55.556 0.00 0.00 0.00 5.25
2315 2453 1.154035 GAAACATTTCCCGGCTGCG 60.154 57.895 0.00 0.00 0.00 5.18
2316 2454 1.862602 GAAACATTTCCCGGCTGCGT 61.863 55.000 0.00 0.00 0.00 5.24
2317 2455 1.460273 AAACATTTCCCGGCTGCGTT 61.460 50.000 0.00 0.00 0.00 4.84
2318 2456 1.460273 AACATTTCCCGGCTGCGTTT 61.460 50.000 0.00 0.00 0.00 3.60
2319 2457 1.154035 CATTTCCCGGCTGCGTTTC 60.154 57.895 0.00 0.00 0.00 2.78
2320 2458 2.340328 ATTTCCCGGCTGCGTTTCC 61.340 57.895 0.00 0.00 0.00 3.13
2321 2459 3.776347 TTTCCCGGCTGCGTTTCCA 62.776 57.895 0.00 0.00 0.00 3.53
2329 2467 0.527565 GCTGCGTTTCCATTCCATGT 59.472 50.000 0.00 0.00 0.00 3.21
2343 2481 2.032528 ATGTGGTGTGGACTGGCG 59.967 61.111 0.00 0.00 0.00 5.69
2344 2482 4.927782 TGTGGTGTGGACTGGCGC 62.928 66.667 0.00 0.00 0.00 6.53
2345 2483 4.626081 GTGGTGTGGACTGGCGCT 62.626 66.667 7.64 0.00 0.00 5.92
2346 2484 4.624364 TGGTGTGGACTGGCGCTG 62.624 66.667 7.64 2.99 0.00 5.18
2398 2536 2.843912 ATTTGCCGCCCTGGAGAAGG 62.844 60.000 0.00 0.00 46.94 3.46
2441 2579 0.328258 CACCTGGGGTCCGAAATTCT 59.672 55.000 0.00 0.00 31.02 2.40
2445 2583 1.812571 CTGGGGTCCGAAATTCTGTTG 59.187 52.381 0.00 0.00 0.00 3.33
2463 2601 0.033991 TGGGAACGAGAGGAGAGGAG 60.034 60.000 0.00 0.00 0.00 3.69
2524 2662 1.872234 CTGGACGATACGTGTGCGG 60.872 63.158 0.00 0.00 41.37 5.69
2544 2682 3.134458 GGTCGGCTCTGAATTAATGGAG 58.866 50.000 8.23 8.23 0.00 3.86
2585 2723 2.166270 GCAGAACTTGCGAAGGAGG 58.834 57.895 0.00 0.00 44.09 4.30
2606 2744 1.961793 TCCGTCTTGGTTTCTTGTGG 58.038 50.000 0.00 0.00 39.52 4.17
2627 2765 3.250040 GGTGTTTGTGTTCTTACGATGCT 59.750 43.478 0.00 0.00 0.00 3.79
2649 2799 4.211125 TGGTGTGGCTCACTGAATTTTTA 58.789 39.130 18.07 0.00 45.50 1.52
2670 2821 1.293963 CCGTGAGTCATGTGCTGTGG 61.294 60.000 11.38 0.00 0.00 4.17
2673 2824 0.250424 TGAGTCATGTGCTGTGGGTG 60.250 55.000 0.00 0.00 0.00 4.61
2674 2825 0.250467 GAGTCATGTGCTGTGGGTGT 60.250 55.000 0.00 0.00 0.00 4.16
2675 2826 0.535780 AGTCATGTGCTGTGGGTGTG 60.536 55.000 0.00 0.00 0.00 3.82
2695 2846 1.548269 GAGTGGTCTGTCCTTCTCCTG 59.452 57.143 0.00 0.00 37.07 3.86
2698 2849 2.231721 GTGGTCTGTCCTTCTCCTGTAC 59.768 54.545 0.00 0.00 37.07 2.90
2703 2854 0.816373 GTCCTTCTCCTGTACCCGAC 59.184 60.000 0.00 0.00 0.00 4.79
2705 2856 1.104630 CCTTCTCCTGTACCCGACTC 58.895 60.000 0.00 0.00 0.00 3.36
2707 2858 1.746220 CTTCTCCTGTACCCGACTCTG 59.254 57.143 0.00 0.00 0.00 3.35
2708 2859 0.034380 TCTCCTGTACCCGACTCTGG 60.034 60.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
276 290 3.326006 TGCATATTTGGCTGGTGGAAAAA 59.674 39.130 0.00 0.00 0.00 1.94
463 484 3.397955 AGTAACAAGGTTGTGGATTCCCT 59.602 43.478 0.00 0.00 41.31 4.20
538 561 6.394025 ACTCGAGGATTTATAACAGAGGTC 57.606 41.667 18.41 0.00 0.00 3.85
611 635 3.430453 GACCTGACCCAAATGGATCAAA 58.570 45.455 0.00 0.00 37.39 2.69
622 646 0.830444 AACTGTAGCGACCTGACCCA 60.830 55.000 0.00 0.00 0.00 4.51
642 666 5.250200 TCTTTGTTTACACAGAACCACACT 58.750 37.500 0.00 0.00 33.22 3.55
643 667 5.448632 CCTCTTTGTTTACACAGAACCACAC 60.449 44.000 0.95 0.00 32.90 3.82
644 668 4.638421 CCTCTTTGTTTACACAGAACCACA 59.362 41.667 0.95 0.00 32.90 4.17
645 669 4.638865 ACCTCTTTGTTTACACAGAACCAC 59.361 41.667 0.95 0.00 32.90 4.16
646 670 4.850680 ACCTCTTTGTTTACACAGAACCA 58.149 39.130 0.95 0.00 32.90 3.67
647 671 4.879545 TGACCTCTTTGTTTACACAGAACC 59.120 41.667 0.95 0.00 32.90 3.62
648 672 6.619801 ATGACCTCTTTGTTTACACAGAAC 57.380 37.500 0.95 0.00 32.90 3.01
649 673 7.990886 ACTTATGACCTCTTTGTTTACACAGAA 59.009 33.333 0.95 0.00 32.90 3.02
650 674 7.506114 ACTTATGACCTCTTTGTTTACACAGA 58.494 34.615 0.00 0.00 33.22 3.41
651 675 7.730364 ACTTATGACCTCTTTGTTTACACAG 57.270 36.000 0.00 0.00 33.22 3.66
652 676 8.514330 AAACTTATGACCTCTTTGTTTACACA 57.486 30.769 0.00 0.00 0.00 3.72
653 677 8.837389 AGAAACTTATGACCTCTTTGTTTACAC 58.163 33.333 0.00 0.00 0.00 2.90
654 678 8.974060 AGAAACTTATGACCTCTTTGTTTACA 57.026 30.769 0.00 0.00 0.00 2.41
658 682 9.660180 GAGATAGAAACTTATGACCTCTTTGTT 57.340 33.333 0.00 0.00 0.00 2.83
659 683 8.261522 GGAGATAGAAACTTATGACCTCTTTGT 58.738 37.037 0.00 0.00 0.00 2.83
660 684 8.482128 AGGAGATAGAAACTTATGACCTCTTTG 58.518 37.037 0.00 0.00 0.00 2.77
661 685 8.616799 AGGAGATAGAAACTTATGACCTCTTT 57.383 34.615 0.00 0.00 0.00 2.52
662 686 8.616799 AAGGAGATAGAAACTTATGACCTCTT 57.383 34.615 0.00 0.00 0.00 2.85
663 687 8.482128 CAAAGGAGATAGAAACTTATGACCTCT 58.518 37.037 0.00 0.00 0.00 3.69
664 688 8.478877 TCAAAGGAGATAGAAACTTATGACCTC 58.521 37.037 0.00 0.00 0.00 3.85
665 689 8.380742 TCAAAGGAGATAGAAACTTATGACCT 57.619 34.615 0.00 0.00 0.00 3.85
687 711 9.451002 TCGGTACAATCCTTTTAAACATATCAA 57.549 29.630 0.00 0.00 0.00 2.57
688 712 9.451002 TTCGGTACAATCCTTTTAAACATATCA 57.549 29.630 0.00 0.00 0.00 2.15
689 713 9.931210 CTTCGGTACAATCCTTTTAAACATATC 57.069 33.333 0.00 0.00 0.00 1.63
690 714 8.403236 GCTTCGGTACAATCCTTTTAAACATAT 58.597 33.333 0.00 0.00 0.00 1.78
691 715 7.390996 TGCTTCGGTACAATCCTTTTAAACATA 59.609 33.333 0.00 0.00 0.00 2.29
692 716 6.207810 TGCTTCGGTACAATCCTTTTAAACAT 59.792 34.615 0.00 0.00 0.00 2.71
693 717 5.531659 TGCTTCGGTACAATCCTTTTAAACA 59.468 36.000 0.00 0.00 0.00 2.83
694 718 6.004408 TGCTTCGGTACAATCCTTTTAAAC 57.996 37.500 0.00 0.00 0.00 2.01
695 719 5.998981 TCTGCTTCGGTACAATCCTTTTAAA 59.001 36.000 0.00 0.00 0.00 1.52
696 720 5.553123 TCTGCTTCGGTACAATCCTTTTAA 58.447 37.500 0.00 0.00 0.00 1.52
697 721 5.155278 TCTGCTTCGGTACAATCCTTTTA 57.845 39.130 0.00 0.00 0.00 1.52
698 722 4.015872 TCTGCTTCGGTACAATCCTTTT 57.984 40.909 0.00 0.00 0.00 2.27
699 723 3.695830 TCTGCTTCGGTACAATCCTTT 57.304 42.857 0.00 0.00 0.00 3.11
700 724 3.600388 CTTCTGCTTCGGTACAATCCTT 58.400 45.455 0.00 0.00 0.00 3.36
701 725 2.678190 GCTTCTGCTTCGGTACAATCCT 60.678 50.000 0.00 0.00 36.03 3.24
702 726 1.666189 GCTTCTGCTTCGGTACAATCC 59.334 52.381 0.00 0.00 36.03 3.01
715 739 1.658095 CTCACGAAAGCTAGCTTCTGC 59.342 52.381 29.42 19.64 34.84 4.26
716 740 3.223423 TCTCACGAAAGCTAGCTTCTG 57.777 47.619 29.42 24.64 34.84 3.02
717 741 3.181480 GGATCTCACGAAAGCTAGCTTCT 60.181 47.826 29.42 19.00 34.84 2.85
718 742 3.120041 GGATCTCACGAAAGCTAGCTTC 58.880 50.000 29.42 20.28 34.84 3.86
719 743 2.763448 AGGATCTCACGAAAGCTAGCTT 59.237 45.455 24.42 24.42 37.98 3.74
720 744 2.383855 AGGATCTCACGAAAGCTAGCT 58.616 47.619 12.68 12.68 0.00 3.32
721 745 2.880963 AGGATCTCACGAAAGCTAGC 57.119 50.000 6.62 6.62 0.00 3.42
722 746 6.811253 AGTATAGGATCTCACGAAAGCTAG 57.189 41.667 0.00 0.00 0.00 3.42
723 747 7.451732 ACTAGTATAGGATCTCACGAAAGCTA 58.548 38.462 0.00 0.00 44.97 3.32
724 748 6.300703 ACTAGTATAGGATCTCACGAAAGCT 58.699 40.000 0.00 0.00 44.97 3.74
725 749 6.563222 ACTAGTATAGGATCTCACGAAAGC 57.437 41.667 0.00 0.00 44.97 3.51
726 750 8.077386 GGAAACTAGTATAGGATCTCACGAAAG 58.923 40.741 0.00 0.00 44.97 2.62
727 751 7.014038 GGGAAACTAGTATAGGATCTCACGAAA 59.986 40.741 0.00 0.00 44.97 3.46
728 752 6.489361 GGGAAACTAGTATAGGATCTCACGAA 59.511 42.308 0.00 0.00 44.97 3.85
729 753 6.002704 GGGAAACTAGTATAGGATCTCACGA 58.997 44.000 0.00 0.00 44.97 4.35
730 754 6.005198 AGGGAAACTAGTATAGGATCTCACG 58.995 44.000 0.00 0.00 44.97 4.35
731 755 7.842887 AAGGGAAACTAGTATAGGATCTCAC 57.157 40.000 0.00 0.00 44.97 3.51
732 756 9.947189 TTTAAGGGAAACTAGTATAGGATCTCA 57.053 33.333 0.00 0.00 44.97 3.27
741 765 9.682465 GGACTTGAATTTAAGGGAAACTAGTAT 57.318 33.333 13.89 0.00 31.94 2.12
742 766 8.887393 AGGACTTGAATTTAAGGGAAACTAGTA 58.113 33.333 13.89 0.00 31.94 1.82
743 767 7.756614 AGGACTTGAATTTAAGGGAAACTAGT 58.243 34.615 13.89 0.00 31.94 2.57
744 768 7.883311 TGAGGACTTGAATTTAAGGGAAACTAG 59.117 37.037 13.89 0.00 31.94 2.57
745 769 7.751646 TGAGGACTTGAATTTAAGGGAAACTA 58.248 34.615 13.89 0.00 31.94 2.24
746 770 6.610830 TGAGGACTTGAATTTAAGGGAAACT 58.389 36.000 13.89 4.85 31.94 2.66
747 771 6.894339 TGAGGACTTGAATTTAAGGGAAAC 57.106 37.500 13.89 3.22 31.94 2.78
748 772 7.066781 ACTTGAGGACTTGAATTTAAGGGAAA 58.933 34.615 13.89 1.73 31.94 3.13
749 773 6.610830 ACTTGAGGACTTGAATTTAAGGGAA 58.389 36.000 13.89 0.00 31.94 3.97
750 774 6.200878 ACTTGAGGACTTGAATTTAAGGGA 57.799 37.500 13.89 0.00 31.94 4.20
751 775 6.071896 GGAACTTGAGGACTTGAATTTAAGGG 60.072 42.308 13.89 0.00 31.94 3.95
752 776 6.717084 AGGAACTTGAGGACTTGAATTTAAGG 59.283 38.462 13.89 0.00 27.25 2.69
753 777 7.445402 TCAGGAACTTGAGGACTTGAATTTAAG 59.555 37.037 8.34 8.34 34.60 1.85
754 778 7.287061 TCAGGAACTTGAGGACTTGAATTTAA 58.713 34.615 0.00 0.00 34.60 1.52
755 779 6.837312 TCAGGAACTTGAGGACTTGAATTTA 58.163 36.000 0.00 0.00 34.60 1.40
756 780 5.694995 TCAGGAACTTGAGGACTTGAATTT 58.305 37.500 0.00 0.00 34.60 1.82
757 781 5.310409 TCAGGAACTTGAGGACTTGAATT 57.690 39.130 0.00 0.00 34.60 2.17
758 782 4.904241 CTCAGGAACTTGAGGACTTGAAT 58.096 43.478 6.12 0.00 34.60 2.57
759 783 4.342862 CTCAGGAACTTGAGGACTTGAA 57.657 45.455 6.12 0.00 34.60 2.69
766 790 2.907042 AGTTACCCTCAGGAACTTGAGG 59.093 50.000 21.06 21.06 46.20 3.86
767 791 4.625607 AAGTTACCCTCAGGAACTTGAG 57.374 45.455 9.29 6.91 39.73 3.02
769 793 3.412386 CCAAGTTACCCTCAGGAACTTG 58.588 50.000 22.93 22.93 46.87 3.16
776 800 3.412386 CAAAGACCCAAGTTACCCTCAG 58.588 50.000 0.00 0.00 0.00 3.35
789 813 0.379669 CGCTCATGATGCAAAGACCC 59.620 55.000 14.69 0.00 0.00 4.46
804 828 1.084289 AATAACAAACTCGGCCGCTC 58.916 50.000 23.51 0.00 0.00 5.03
857 884 9.190317 ACCTCTTCCTCAATTAATAACAAATCC 57.810 33.333 0.00 0.00 0.00 3.01
989 1028 4.982916 GGTGGTTATATACAAGTCTCGCTG 59.017 45.833 0.00 0.00 0.00 5.18
1102 1151 2.224867 GCCATGTAGGGTATGGAGCAAT 60.225 50.000 8.13 0.00 46.42 3.56
1103 1152 1.142870 GCCATGTAGGGTATGGAGCAA 59.857 52.381 8.13 0.00 46.42 3.91
1105 1154 0.320771 CGCCATGTAGGGTATGGAGC 60.321 60.000 8.13 0.00 46.42 4.70
1109 1177 0.321671 CCCTCGCCATGTAGGGTATG 59.678 60.000 14.22 0.00 46.45 2.39
1114 1192 0.462047 GTGAACCCTCGCCATGTAGG 60.462 60.000 0.00 0.00 41.84 3.18
1502 1610 2.283388 ACCTCGTAAGACGGCCCA 60.283 61.111 0.00 0.00 45.01 5.36
1866 1998 1.303561 TTGCTCTCATGCCCACACC 60.304 57.895 0.00 0.00 0.00 4.16
1978 2110 7.275183 TCTGGATTGAAGGAATATGTACACAG 58.725 38.462 0.00 0.00 0.00 3.66
2029 2167 1.609555 GAGGCTGAGGACCGTATACAG 59.390 57.143 3.32 0.00 0.00 2.74
2039 2177 3.091694 AGACTCGGAGGCTGAGGA 58.908 61.111 13.80 0.00 40.86 3.71
2066 2204 6.591834 GCTCTGTACAAGACAACAAGATGTAT 59.408 38.462 0.00 0.00 37.70 2.29
2067 2205 5.926542 GCTCTGTACAAGACAACAAGATGTA 59.073 40.000 0.00 0.00 37.70 2.29
2068 2206 4.752101 GCTCTGTACAAGACAACAAGATGT 59.248 41.667 0.00 0.00 37.70 3.06
2069 2207 4.143242 CGCTCTGTACAAGACAACAAGATG 60.143 45.833 0.00 0.00 37.70 2.90
2110 2248 5.395486 GCGAAATACGTATGAAAAAGATGGC 59.605 40.000 9.24 0.00 44.60 4.40
2111 2249 5.907391 GGCGAAATACGTATGAAAAAGATGG 59.093 40.000 9.24 0.00 44.60 3.51
2112 2250 5.615581 CGGCGAAATACGTATGAAAAAGATG 59.384 40.000 9.24 0.00 44.60 2.90
2113 2251 5.521010 TCGGCGAAATACGTATGAAAAAGAT 59.479 36.000 7.35 0.00 44.60 2.40
2114 2252 4.863689 TCGGCGAAATACGTATGAAAAAGA 59.136 37.500 7.35 3.16 44.60 2.52
2115 2253 5.005012 TCTCGGCGAAATACGTATGAAAAAG 59.995 40.000 12.13 2.13 44.60 2.27
2116 2254 4.863689 TCTCGGCGAAATACGTATGAAAAA 59.136 37.500 12.13 0.00 44.60 1.94
2117 2255 4.422840 TCTCGGCGAAATACGTATGAAAA 58.577 39.130 12.13 0.00 44.60 2.29
2118 2256 4.031418 TCTCGGCGAAATACGTATGAAA 57.969 40.909 12.13 0.00 44.60 2.69
2119 2257 3.696281 TCTCGGCGAAATACGTATGAA 57.304 42.857 12.13 0.00 44.60 2.57
2120 2258 3.251487 TGATCTCGGCGAAATACGTATGA 59.749 43.478 12.13 1.07 44.60 2.15
2121 2259 3.361053 GTGATCTCGGCGAAATACGTATG 59.639 47.826 12.13 0.00 44.60 2.39
2122 2260 3.004002 TGTGATCTCGGCGAAATACGTAT 59.996 43.478 12.13 1.14 44.60 3.06
2123 2261 2.355444 TGTGATCTCGGCGAAATACGTA 59.645 45.455 12.13 0.00 44.60 3.57
2124 2262 1.133598 TGTGATCTCGGCGAAATACGT 59.866 47.619 12.13 0.00 44.60 3.57
2163 2301 3.564027 GATGCCGGAAACTCGCGG 61.564 66.667 5.05 0.00 34.69 6.46
2164 2302 1.635663 AAAGATGCCGGAAACTCGCG 61.636 55.000 5.05 0.00 0.00 5.87
2195 2333 2.693591 TGGCTATCTCGGAGATCGTTTT 59.306 45.455 23.05 2.82 36.20 2.43
2199 2337 1.737236 CTCTGGCTATCTCGGAGATCG 59.263 57.143 23.05 17.92 39.36 3.69
2201 2339 3.737559 ATCTCTGGCTATCTCGGAGAT 57.262 47.619 22.96 22.96 46.46 2.75
2204 2342 4.853468 AGATATCTCTGGCTATCTCGGA 57.147 45.455 0.00 0.00 30.61 4.55
2205 2343 5.758296 GTCTAGATATCTCTGGCTATCTCGG 59.242 48.000 8.95 0.00 36.39 4.63
2221 2359 0.182061 ACGGCGTCCCTGTCTAGATA 59.818 55.000 6.77 0.00 0.00 1.98
2250 2388 2.863153 CACGGAAAGCGGCAGAAG 59.137 61.111 1.45 0.00 0.00 2.85
2308 2446 1.656818 ATGGAATGGAAACGCAGCCG 61.657 55.000 0.00 0.00 41.14 5.52
2310 2448 3.334078 CATGGAATGGAAACGCAGC 57.666 52.632 0.00 0.00 41.79 5.25
2329 2467 4.624364 CAGCGCCAGTCCACACCA 62.624 66.667 2.29 0.00 0.00 4.17
2350 2488 4.773117 GAGGACGTGTCGCGGTCC 62.773 72.222 20.53 20.53 46.52 4.46
2375 2513 3.762247 CCAGGGCGGCAAATGGTG 61.762 66.667 12.47 0.00 0.00 4.17
2398 2536 0.537653 CGTCTCTTCCCTTCCCTTCC 59.462 60.000 0.00 0.00 0.00 3.46
2433 2571 3.064207 TCTCGTTCCCAACAGAATTTCG 58.936 45.455 0.00 0.00 0.00 3.46
2441 2579 1.257743 CTCTCCTCTCGTTCCCAACA 58.742 55.000 0.00 0.00 0.00 3.33
2445 2583 0.753848 CCTCCTCTCCTCTCGTTCCC 60.754 65.000 0.00 0.00 0.00 3.97
2506 2644 1.872234 CCGCACACGTATCGTCCAG 60.872 63.158 0.00 0.00 38.32 3.86
2511 2649 2.947621 CCGACCGCACACGTATCG 60.948 66.667 0.00 0.00 42.43 2.92
2524 2662 3.134458 CCTCCATTAATTCAGAGCCGAC 58.866 50.000 0.00 0.00 0.00 4.79
2584 2722 2.484264 CACAAGAAACCAAGACGGATCC 59.516 50.000 0.00 0.00 38.63 3.36
2585 2723 2.484264 CCACAAGAAACCAAGACGGATC 59.516 50.000 0.00 0.00 38.63 3.36
2649 2799 1.004560 CAGCACATGACTCACGGGT 60.005 57.895 0.00 0.00 0.00 5.28
2670 2821 0.759346 AAGGACAGACCACTCACACC 59.241 55.000 0.00 0.00 42.04 4.16
2673 2824 1.273886 GGAGAAGGACAGACCACTCAC 59.726 57.143 14.25 1.22 41.92 3.51
2674 2825 1.148027 AGGAGAAGGACAGACCACTCA 59.852 52.381 14.25 0.00 41.92 3.41
2675 2826 1.548269 CAGGAGAAGGACAGACCACTC 59.452 57.143 7.31 7.31 42.04 3.51
2698 2849 3.771160 CCGAACCCCAGAGTCGGG 61.771 72.222 11.76 11.76 46.94 5.14
2703 2854 2.264794 CGAACCCGAACCCCAGAG 59.735 66.667 0.00 0.00 38.22 3.35
2707 2858 4.646877 TTGCCGAACCCGAACCCC 62.647 66.667 0.00 0.00 38.22 4.95
2708 2859 3.359523 GTTGCCGAACCCGAACCC 61.360 66.667 0.00 0.00 38.22 4.11
2709 2860 1.520600 ATTGTTGCCGAACCCGAACC 61.521 55.000 0.00 0.00 38.22 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.