Multiple sequence alignment - TraesCS3A01G340500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G340500 chr3A 100.000 4415 0 0 1 4415 587634782 587639196 0.000000e+00 8154.0
1 TraesCS3A01G340500 chr3A 100.000 127 0 0 4673 4799 587639454 587639580 8.030000e-58 235.0
2 TraesCS3A01G340500 chr3D 93.806 3875 139 36 221 4015 445857406 445861259 0.000000e+00 5733.0
3 TraesCS3A01G340500 chr3D 92.889 225 11 1 1 225 445848422 445848641 5.990000e-84 322.0
4 TraesCS3A01G340500 chr3B 94.621 3644 111 27 533 4105 584810938 584814567 0.000000e+00 5565.0
5 TraesCS3A01G340500 chr3B 88.710 124 14 0 4674 4797 584814749 584814872 8.320000e-33 152.0
6 TraesCS3A01G340500 chr1D 80.477 2392 376 67 1277 3628 401134707 401132367 0.000000e+00 1746.0
7 TraesCS3A01G340500 chr1D 91.620 179 15 0 1099 1277 401134972 401134794 1.030000e-61 248.0
8 TraesCS3A01G340500 chr2D 87.452 1307 144 14 984 2277 612365026 612366325 0.000000e+00 1487.0
9 TraesCS3A01G340500 chr2D 83.789 1499 171 47 2358 3816 612366322 612367788 0.000000e+00 1356.0
10 TraesCS3A01G340500 chr2B 86.993 1307 150 13 984 2277 747237329 747238628 0.000000e+00 1454.0
11 TraesCS3A01G340500 chr2B 83.956 991 105 31 2853 3816 747239116 747240079 0.000000e+00 900.0
12 TraesCS3A01G340500 chr2B 87.286 409 41 6 2358 2765 747238625 747239023 1.570000e-124 457.0
13 TraesCS3A01G340500 chr2A 86.830 1306 154 12 984 2277 744492004 744493303 0.000000e+00 1443.0
14 TraesCS3A01G340500 chr2A 83.965 1478 167 44 2358 3804 744493300 744494738 0.000000e+00 1352.0
15 TraesCS3A01G340500 chr2A 95.745 47 2 0 4182 4228 165237027 165237073 5.150000e-10 76.8
16 TraesCS3A01G340500 chr1B 82.823 1403 215 21 1277 2665 538868158 538866768 0.000000e+00 1232.0
17 TraesCS3A01G340500 chr1B 81.127 763 131 10 2871 3628 538866560 538865806 2.470000e-167 599.0
18 TraesCS3A01G340500 chr1B 91.620 179 15 0 1099 1277 538868407 538868229 1.030000e-61 248.0
19 TraesCS3A01G340500 chr1A 85.926 945 131 2 1334 2277 497243210 497242267 0.000000e+00 1007.0
20 TraesCS3A01G340500 chr1A 78.038 1407 244 53 2358 3742 497242174 497240811 0.000000e+00 826.0
21 TraesCS3A01G340500 chr1A 91.620 179 15 0 1099 1277 497243523 497243345 1.030000e-61 248.0
22 TraesCS3A01G340500 chr5A 95.000 120 6 0 4109 4228 674368124 674368243 6.340000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G340500 chr3A 587634782 587639580 4798 False 4194.500000 8154 100.000000 1 4799 2 chr3A.!!$F1 4798
1 TraesCS3A01G340500 chr3D 445857406 445861259 3853 False 5733.000000 5733 93.806000 221 4015 1 chr3D.!!$F2 3794
2 TraesCS3A01G340500 chr3B 584810938 584814872 3934 False 2858.500000 5565 91.665500 533 4797 2 chr3B.!!$F1 4264
3 TraesCS3A01G340500 chr1D 401132367 401134972 2605 True 997.000000 1746 86.048500 1099 3628 2 chr1D.!!$R1 2529
4 TraesCS3A01G340500 chr2D 612365026 612367788 2762 False 1421.500000 1487 85.620500 984 3816 2 chr2D.!!$F1 2832
5 TraesCS3A01G340500 chr2B 747237329 747240079 2750 False 937.000000 1454 86.078333 984 3816 3 chr2B.!!$F1 2832
6 TraesCS3A01G340500 chr2A 744492004 744494738 2734 False 1397.500000 1443 85.397500 984 3804 2 chr2A.!!$F2 2820
7 TraesCS3A01G340500 chr1B 538865806 538868407 2601 True 693.000000 1232 85.190000 1099 3628 3 chr1B.!!$R1 2529
8 TraesCS3A01G340500 chr1A 497240811 497243523 2712 True 693.666667 1007 85.194667 1099 3742 3 chr1A.!!$R1 2643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 201 0.034089 CAAGGGAAGGGACCACCATC 60.034 60.0 0.00 0.0 43.89 3.51 F
226 227 0.109532 TTGATGCCAAGGGACAACGA 59.890 50.0 0.00 0.0 0.00 3.85 F
367 369 0.319727 CTGCCATCTCAGATCCGAGC 60.320 60.0 0.67 0.0 36.19 5.03 F
499 519 0.597637 AGTGTCGCAGAGGTTTCACG 60.598 55.0 0.00 0.0 36.95 4.35 F
2248 2371 0.107214 GGGGCTCGTGGAAATGATCA 60.107 55.0 0.00 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1423 1546 1.134530 GACCGCTTGATGACGTCGAG 61.135 60.000 11.62 7.48 40.75 4.04 R
1628 1751 1.572085 CTCCGTGTTGAGCAGCTTGG 61.572 60.000 0.00 0.00 0.00 3.61 R
1872 1995 2.456119 GGCAAGGATGAGCGACACG 61.456 63.158 0.00 0.00 0.00 4.49 R
2481 2729 1.026718 GCCTGATGCGCTGTAGGTTT 61.027 55.000 20.13 0.00 32.85 3.27 R
4209 4564 0.036010 CACCTCGCCAATCACTTCCT 60.036 55.000 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.402628 TGCCACCTACAAGAAGAAGAC 57.597 47.619 0.00 0.00 0.00 3.01
21 22 2.972713 TGCCACCTACAAGAAGAAGACT 59.027 45.455 0.00 0.00 0.00 3.24
22 23 3.244215 TGCCACCTACAAGAAGAAGACTG 60.244 47.826 0.00 0.00 0.00 3.51
23 24 3.006967 GCCACCTACAAGAAGAAGACTGA 59.993 47.826 0.00 0.00 0.00 3.41
24 25 4.561105 CCACCTACAAGAAGAAGACTGAC 58.439 47.826 0.00 0.00 0.00 3.51
25 26 4.039245 CCACCTACAAGAAGAAGACTGACA 59.961 45.833 0.00 0.00 0.00 3.58
26 27 4.985409 CACCTACAAGAAGAAGACTGACAC 59.015 45.833 0.00 0.00 0.00 3.67
27 28 4.896482 ACCTACAAGAAGAAGACTGACACT 59.104 41.667 0.00 0.00 0.00 3.55
28 29 5.010213 ACCTACAAGAAGAAGACTGACACTC 59.990 44.000 0.00 0.00 0.00 3.51
29 30 5.010112 CCTACAAGAAGAAGACTGACACTCA 59.990 44.000 0.00 0.00 0.00 3.41
30 31 5.344743 ACAAGAAGAAGACTGACACTCAA 57.655 39.130 0.00 0.00 0.00 3.02
31 32 5.734720 ACAAGAAGAAGACTGACACTCAAA 58.265 37.500 0.00 0.00 0.00 2.69
32 33 5.814705 ACAAGAAGAAGACTGACACTCAAAG 59.185 40.000 0.00 0.00 0.00 2.77
33 34 4.376146 AGAAGAAGACTGACACTCAAAGC 58.624 43.478 0.00 0.00 0.00 3.51
34 35 3.827008 AGAAGACTGACACTCAAAGCA 57.173 42.857 0.00 0.00 0.00 3.91
35 36 4.348863 AGAAGACTGACACTCAAAGCAT 57.651 40.909 0.00 0.00 0.00 3.79
36 37 4.314121 AGAAGACTGACACTCAAAGCATC 58.686 43.478 0.00 0.00 0.00 3.91
37 38 2.681706 AGACTGACACTCAAAGCATCG 58.318 47.619 0.00 0.00 0.00 3.84
38 39 1.127582 GACTGACACTCAAAGCATCGC 59.872 52.381 0.00 0.00 0.00 4.58
39 40 0.445436 CTGACACTCAAAGCATCGCC 59.555 55.000 0.00 0.00 0.00 5.54
40 41 1.291184 TGACACTCAAAGCATCGCCG 61.291 55.000 0.00 0.00 0.00 6.46
41 42 1.005037 ACACTCAAAGCATCGCCGA 60.005 52.632 0.00 0.00 0.00 5.54
42 43 1.291877 ACACTCAAAGCATCGCCGAC 61.292 55.000 0.00 0.00 0.00 4.79
43 44 1.005037 ACTCAAAGCATCGCCGACA 60.005 52.632 0.00 0.00 0.00 4.35
44 45 0.391661 ACTCAAAGCATCGCCGACAT 60.392 50.000 0.00 0.00 0.00 3.06
45 46 0.302890 CTCAAAGCATCGCCGACATC 59.697 55.000 0.00 0.00 0.00 3.06
46 47 0.390998 TCAAAGCATCGCCGACATCA 60.391 50.000 0.00 0.00 0.00 3.07
47 48 0.659427 CAAAGCATCGCCGACATCAT 59.341 50.000 0.00 0.00 0.00 2.45
48 49 0.659427 AAAGCATCGCCGACATCATG 59.341 50.000 0.00 0.00 0.00 3.07
49 50 0.179076 AAGCATCGCCGACATCATGA 60.179 50.000 0.00 0.00 0.00 3.07
50 51 0.877649 AGCATCGCCGACATCATGAC 60.878 55.000 0.00 0.00 0.00 3.06
51 52 0.877649 GCATCGCCGACATCATGACT 60.878 55.000 0.00 0.00 0.00 3.41
52 53 0.857287 CATCGCCGACATCATGACTG 59.143 55.000 0.00 0.33 0.00 3.51
53 54 0.877649 ATCGCCGACATCATGACTGC 60.878 55.000 0.00 0.00 0.00 4.40
54 55 2.528743 CGCCGACATCATGACTGCC 61.529 63.158 0.00 0.00 0.00 4.85
55 56 1.450134 GCCGACATCATGACTGCCA 60.450 57.895 0.00 0.00 0.00 4.92
56 57 0.816825 GCCGACATCATGACTGCCAT 60.817 55.000 0.00 0.00 35.44 4.40
57 58 1.671979 CCGACATCATGACTGCCATT 58.328 50.000 0.00 0.00 31.94 3.16
58 59 1.332686 CCGACATCATGACTGCCATTG 59.667 52.381 0.00 0.00 31.94 2.82
59 60 1.268386 CGACATCATGACTGCCATTGC 60.268 52.381 0.00 0.00 31.94 3.56
60 61 1.066605 GACATCATGACTGCCATTGCC 59.933 52.381 0.00 0.00 36.33 4.52
61 62 1.107945 CATCATGACTGCCATTGCCA 58.892 50.000 0.00 0.00 36.33 4.92
62 63 1.067060 CATCATGACTGCCATTGCCAG 59.933 52.381 0.00 0.00 36.33 4.85
63 64 0.038599 TCATGACTGCCATTGCCAGT 59.961 50.000 0.00 0.00 36.33 4.00
64 65 0.892755 CATGACTGCCATTGCCAGTT 59.107 50.000 1.34 0.00 36.33 3.16
65 66 1.135199 CATGACTGCCATTGCCAGTTC 60.135 52.381 1.34 0.00 36.33 3.01
66 67 0.895100 TGACTGCCATTGCCAGTTCC 60.895 55.000 1.34 0.00 36.33 3.62
67 68 1.926511 GACTGCCATTGCCAGTTCCG 61.927 60.000 1.34 0.00 36.33 4.30
68 69 2.676121 TGCCATTGCCAGTTCCGG 60.676 61.111 0.00 0.00 36.33 5.14
69 70 2.676471 GCCATTGCCAGTTCCGGT 60.676 61.111 0.00 0.00 0.00 5.28
70 71 2.700773 GCCATTGCCAGTTCCGGTC 61.701 63.158 0.00 0.00 0.00 4.79
71 72 1.303236 CCATTGCCAGTTCCGGTCA 60.303 57.895 0.00 0.00 0.00 4.02
72 73 0.893270 CCATTGCCAGTTCCGGTCAA 60.893 55.000 0.00 0.00 0.00 3.18
73 74 0.240945 CATTGCCAGTTCCGGTCAAC 59.759 55.000 0.00 0.00 0.00 3.18
74 75 0.893727 ATTGCCAGTTCCGGTCAACC 60.894 55.000 0.00 0.00 0.00 3.77
85 86 3.969995 GGTCAACCGGATCTAGAGC 57.030 57.895 9.46 0.00 0.00 4.09
86 87 0.389757 GGTCAACCGGATCTAGAGCC 59.610 60.000 17.43 17.43 0.00 4.70
87 88 0.389757 GTCAACCGGATCTAGAGCCC 59.610 60.000 21.17 12.09 32.05 5.19
88 89 0.759436 TCAACCGGATCTAGAGCCCC 60.759 60.000 21.17 9.65 32.05 5.80
89 90 1.459730 AACCGGATCTAGAGCCCCC 60.460 63.158 21.17 7.24 32.05 5.40
108 109 4.382541 CCCTCCCCCAGCCCAAAC 62.383 72.222 0.00 0.00 0.00 2.93
109 110 3.589542 CCTCCCCCAGCCCAAACA 61.590 66.667 0.00 0.00 0.00 2.83
110 111 2.525592 CTCCCCCAGCCCAAACAA 59.474 61.111 0.00 0.00 0.00 2.83
111 112 1.908299 CTCCCCCAGCCCAAACAAC 60.908 63.158 0.00 0.00 0.00 3.32
112 113 2.922503 CCCCCAGCCCAAACAACC 60.923 66.667 0.00 0.00 0.00 3.77
113 114 2.201210 CCCCAGCCCAAACAACCT 59.799 61.111 0.00 0.00 0.00 3.50
114 115 1.462928 CCCCAGCCCAAACAACCTA 59.537 57.895 0.00 0.00 0.00 3.08
115 116 0.178947 CCCCAGCCCAAACAACCTAA 60.179 55.000 0.00 0.00 0.00 2.69
116 117 0.966179 CCCAGCCCAAACAACCTAAC 59.034 55.000 0.00 0.00 0.00 2.34
117 118 0.966179 CCAGCCCAAACAACCTAACC 59.034 55.000 0.00 0.00 0.00 2.85
118 119 1.698506 CAGCCCAAACAACCTAACCA 58.301 50.000 0.00 0.00 0.00 3.67
119 120 1.613437 CAGCCCAAACAACCTAACCAG 59.387 52.381 0.00 0.00 0.00 4.00
120 121 0.317160 GCCCAAACAACCTAACCAGC 59.683 55.000 0.00 0.00 0.00 4.85
121 122 0.966179 CCCAAACAACCTAACCAGCC 59.034 55.000 0.00 0.00 0.00 4.85
122 123 1.480498 CCCAAACAACCTAACCAGCCT 60.480 52.381 0.00 0.00 0.00 4.58
123 124 1.886542 CCAAACAACCTAACCAGCCTC 59.113 52.381 0.00 0.00 0.00 4.70
124 125 1.886542 CAAACAACCTAACCAGCCTCC 59.113 52.381 0.00 0.00 0.00 4.30
125 126 1.145571 AACAACCTAACCAGCCTCCA 58.854 50.000 0.00 0.00 0.00 3.86
126 127 0.693049 ACAACCTAACCAGCCTCCAG 59.307 55.000 0.00 0.00 0.00 3.86
127 128 0.984230 CAACCTAACCAGCCTCCAGA 59.016 55.000 0.00 0.00 0.00 3.86
128 129 1.561542 CAACCTAACCAGCCTCCAGAT 59.438 52.381 0.00 0.00 0.00 2.90
129 130 1.501582 ACCTAACCAGCCTCCAGATC 58.498 55.000 0.00 0.00 0.00 2.75
130 131 0.761802 CCTAACCAGCCTCCAGATCC 59.238 60.000 0.00 0.00 0.00 3.36
131 132 0.390860 CTAACCAGCCTCCAGATCCG 59.609 60.000 0.00 0.00 0.00 4.18
132 133 1.048724 TAACCAGCCTCCAGATCCGG 61.049 60.000 0.00 0.00 0.00 5.14
133 134 4.247380 CCAGCCTCCAGATCCGGC 62.247 72.222 0.00 5.14 44.09 6.13
136 137 3.798758 GCCTCCAGATCCGGCTAT 58.201 61.111 0.00 0.00 40.62 2.97
137 138 1.594310 GCCTCCAGATCCGGCTATC 59.406 63.158 0.00 0.00 40.62 2.08
138 139 1.893919 GCCTCCAGATCCGGCTATCC 61.894 65.000 0.00 0.00 40.62 2.59
167 168 3.113745 GCATCTTGCATCGGTGGG 58.886 61.111 0.00 0.00 44.26 4.61
168 169 2.484062 GCATCTTGCATCGGTGGGG 61.484 63.158 0.00 0.00 44.26 4.96
169 170 1.077501 CATCTTGCATCGGTGGGGT 60.078 57.895 0.00 0.00 0.00 4.95
170 171 0.180171 CATCTTGCATCGGTGGGGTA 59.820 55.000 0.00 0.00 0.00 3.69
171 172 0.469917 ATCTTGCATCGGTGGGGTAG 59.530 55.000 0.00 0.00 0.00 3.18
172 173 1.153168 CTTGCATCGGTGGGGTAGG 60.153 63.158 0.00 0.00 0.00 3.18
173 174 1.613928 TTGCATCGGTGGGGTAGGA 60.614 57.895 0.00 0.00 0.00 2.94
174 175 1.906105 TTGCATCGGTGGGGTAGGAC 61.906 60.000 0.00 0.00 0.00 3.85
175 176 2.812499 CATCGGTGGGGTAGGACG 59.188 66.667 0.00 0.00 0.00 4.79
176 177 1.755395 CATCGGTGGGGTAGGACGA 60.755 63.158 0.00 0.00 38.00 4.20
177 178 1.113517 CATCGGTGGGGTAGGACGAT 61.114 60.000 0.00 0.00 44.12 3.73
178 179 1.113517 ATCGGTGGGGTAGGACGATG 61.114 60.000 0.00 0.00 42.02 3.84
179 180 1.755395 CGGTGGGGTAGGACGATGA 60.755 63.158 0.00 0.00 0.00 2.92
180 181 1.324740 CGGTGGGGTAGGACGATGAA 61.325 60.000 0.00 0.00 0.00 2.57
181 182 0.177373 GGTGGGGTAGGACGATGAAC 59.823 60.000 0.00 0.00 0.00 3.18
182 183 0.899720 GTGGGGTAGGACGATGAACA 59.100 55.000 0.00 0.00 0.00 3.18
183 184 1.276989 GTGGGGTAGGACGATGAACAA 59.723 52.381 0.00 0.00 0.00 2.83
184 185 1.553248 TGGGGTAGGACGATGAACAAG 59.447 52.381 0.00 0.00 0.00 3.16
185 186 1.134491 GGGGTAGGACGATGAACAAGG 60.134 57.143 0.00 0.00 0.00 3.61
186 187 1.134491 GGGTAGGACGATGAACAAGGG 60.134 57.143 0.00 0.00 0.00 3.95
187 188 1.829222 GGTAGGACGATGAACAAGGGA 59.171 52.381 0.00 0.00 0.00 4.20
188 189 2.235402 GGTAGGACGATGAACAAGGGAA 59.765 50.000 0.00 0.00 0.00 3.97
189 190 2.770164 AGGACGATGAACAAGGGAAG 57.230 50.000 0.00 0.00 0.00 3.46
190 191 1.279271 AGGACGATGAACAAGGGAAGG 59.721 52.381 0.00 0.00 0.00 3.46
191 192 1.679032 GGACGATGAACAAGGGAAGGG 60.679 57.143 0.00 0.00 0.00 3.95
192 193 1.278127 GACGATGAACAAGGGAAGGGA 59.722 52.381 0.00 0.00 0.00 4.20
193 194 1.003233 ACGATGAACAAGGGAAGGGAC 59.997 52.381 0.00 0.00 0.00 4.46
194 195 1.679032 CGATGAACAAGGGAAGGGACC 60.679 57.143 0.00 0.00 0.00 4.46
195 196 1.354368 GATGAACAAGGGAAGGGACCA 59.646 52.381 0.00 0.00 0.00 4.02
196 197 0.476771 TGAACAAGGGAAGGGACCAC 59.523 55.000 0.00 0.00 0.00 4.16
197 198 0.251209 GAACAAGGGAAGGGACCACC 60.251 60.000 0.00 0.00 40.67 4.61
198 199 0.996762 AACAAGGGAAGGGACCACCA 60.997 55.000 0.00 0.00 43.89 4.17
199 200 0.776080 ACAAGGGAAGGGACCACCAT 60.776 55.000 0.00 0.00 43.89 3.55
200 201 0.034089 CAAGGGAAGGGACCACCATC 60.034 60.000 0.00 0.00 43.89 3.51
201 202 0.178831 AAGGGAAGGGACCACCATCT 60.179 55.000 0.00 0.00 43.89 2.90
202 203 0.178831 AGGGAAGGGACCACCATCTT 60.179 55.000 0.00 0.00 43.89 2.40
203 204 0.256177 GGGAAGGGACCACCATCTTC 59.744 60.000 0.00 0.00 43.89 2.87
204 205 0.991920 GGAAGGGACCACCATCTTCA 59.008 55.000 8.97 0.00 43.89 3.02
205 206 1.354368 GGAAGGGACCACCATCTTCAA 59.646 52.381 8.97 0.00 43.89 2.69
206 207 2.225017 GGAAGGGACCACCATCTTCAAA 60.225 50.000 8.97 0.00 43.89 2.69
207 208 3.564352 GGAAGGGACCACCATCTTCAAAT 60.564 47.826 8.97 0.00 43.89 2.32
208 209 3.833559 AGGGACCACCATCTTCAAATT 57.166 42.857 0.00 0.00 43.89 1.82
209 210 3.434309 AGGGACCACCATCTTCAAATTG 58.566 45.455 0.00 0.00 43.89 2.32
210 211 3.075882 AGGGACCACCATCTTCAAATTGA 59.924 43.478 0.00 0.00 43.89 2.57
211 212 4.026052 GGGACCACCATCTTCAAATTGAT 58.974 43.478 0.00 0.00 39.85 2.57
212 213 4.142093 GGGACCACCATCTTCAAATTGATG 60.142 45.833 0.00 0.00 39.60 3.07
213 214 4.427312 GACCACCATCTTCAAATTGATGC 58.573 43.478 0.00 0.00 38.84 3.91
214 215 3.196254 ACCACCATCTTCAAATTGATGCC 59.804 43.478 0.00 0.00 38.84 4.40
215 216 3.196039 CCACCATCTTCAAATTGATGCCA 59.804 43.478 0.00 0.00 38.84 4.92
216 217 4.322877 CCACCATCTTCAAATTGATGCCAA 60.323 41.667 0.00 0.00 38.84 4.52
217 218 4.868171 CACCATCTTCAAATTGATGCCAAG 59.132 41.667 0.00 0.00 38.84 3.61
218 219 4.081309 ACCATCTTCAAATTGATGCCAAGG 60.081 41.667 0.00 2.63 38.84 3.61
219 220 4.439057 CATCTTCAAATTGATGCCAAGGG 58.561 43.478 0.00 0.00 35.48 3.95
220 221 3.777087 TCTTCAAATTGATGCCAAGGGA 58.223 40.909 0.00 0.00 35.48 4.20
221 222 3.511146 TCTTCAAATTGATGCCAAGGGAC 59.489 43.478 0.00 0.00 35.48 4.46
222 223 2.886913 TCAAATTGATGCCAAGGGACA 58.113 42.857 0.00 0.00 35.48 4.02
223 224 3.237746 TCAAATTGATGCCAAGGGACAA 58.762 40.909 0.00 0.00 35.48 3.18
224 225 3.006752 TCAAATTGATGCCAAGGGACAAC 59.993 43.478 0.00 0.00 35.48 3.32
225 226 1.176527 ATTGATGCCAAGGGACAACG 58.823 50.000 0.00 0.00 35.48 4.10
226 227 0.109532 TTGATGCCAAGGGACAACGA 59.890 50.000 0.00 0.00 0.00 3.85
227 228 0.321564 TGATGCCAAGGGACAACGAG 60.322 55.000 0.00 0.00 0.00 4.18
228 229 1.002134 ATGCCAAGGGACAACGAGG 60.002 57.895 0.00 0.00 0.00 4.63
229 230 1.779061 ATGCCAAGGGACAACGAGGT 61.779 55.000 0.00 0.00 0.00 3.85
312 313 2.048023 CAACATCCACGCCAGCCAT 61.048 57.895 0.00 0.00 0.00 4.40
349 351 2.266055 GCACTCCTTACTGCCGCT 59.734 61.111 0.00 0.00 0.00 5.52
353 355 3.315142 CTCCTTACTGCCGCTGCCA 62.315 63.158 0.00 0.00 36.33 4.92
356 358 1.153289 CTTACTGCCGCTGCCATCT 60.153 57.895 0.00 0.00 36.33 2.90
367 369 0.319727 CTGCCATCTCAGATCCGAGC 60.320 60.000 0.67 0.00 36.19 5.03
379 381 3.536917 CCGAGCGCTCCATGGGTA 61.537 66.667 30.66 0.00 0.00 3.69
406 408 1.896183 CCACACATCCCAACACGCA 60.896 57.895 0.00 0.00 0.00 5.24
408 410 1.896660 ACACATCCCAACACGCACC 60.897 57.895 0.00 0.00 0.00 5.01
409 411 1.600636 CACATCCCAACACGCACCT 60.601 57.895 0.00 0.00 0.00 4.00
413 415 3.345808 CCCAACACGCACCTGTCG 61.346 66.667 0.00 0.00 0.00 4.35
445 447 2.596338 CGGAAACCCCCACACCAC 60.596 66.667 0.00 0.00 0.00 4.16
446 448 2.203582 GGAAACCCCCACACCACC 60.204 66.667 0.00 0.00 0.00 4.61
447 449 2.596338 GAAACCCCCACACCACCG 60.596 66.667 0.00 0.00 0.00 4.94
450 470 4.892291 ACCCCCACACCACCGTCT 62.892 66.667 0.00 0.00 0.00 4.18
488 508 4.735132 GCCACCGCTAGTGTCGCA 62.735 66.667 1.99 0.00 45.74 5.10
489 509 2.507102 CCACCGCTAGTGTCGCAG 60.507 66.667 1.99 0.00 45.74 5.18
491 511 1.515088 CACCGCTAGTGTCGCAGAG 60.515 63.158 1.99 0.00 41.93 3.35
496 516 1.351153 GCTAGTGTCGCAGAGGTTTC 58.649 55.000 0.00 0.00 36.95 2.78
497 517 1.336887 GCTAGTGTCGCAGAGGTTTCA 60.337 52.381 0.00 0.00 36.95 2.69
499 519 0.597637 AGTGTCGCAGAGGTTTCACG 60.598 55.000 0.00 0.00 36.95 4.35
500 520 1.954146 TGTCGCAGAGGTTTCACGC 60.954 57.895 0.00 0.00 36.95 5.34
501 521 2.733218 TCGCAGAGGTTTCACGCG 60.733 61.111 3.53 3.53 44.19 6.01
507 527 4.595538 AGGTTTCACGCGGCGACA 62.596 61.111 30.94 11.81 0.00 4.35
526 546 2.710902 CCTGCCGACGGTGATGAGA 61.711 63.158 16.73 0.00 0.00 3.27
527 547 1.215382 CTGCCGACGGTGATGAGAA 59.785 57.895 16.73 0.00 0.00 2.87
616 639 5.901853 TCTCTCCATAAATCTGGACTGATGT 59.098 40.000 0.00 0.00 40.43 3.06
633 656 7.262944 ACTGATGTAGCAGCAAGGAGACTTT 62.263 44.000 0.00 0.00 43.35 2.66
664 687 3.801698 CATCAAGTAGTAGGTGCATGCT 58.198 45.455 20.33 0.40 0.00 3.79
665 688 3.981071 TCAAGTAGTAGGTGCATGCTT 57.019 42.857 20.33 7.19 0.00 3.91
679 702 1.713005 ATGCTTGATGGCCCGATCCT 61.713 55.000 0.00 0.00 0.00 3.24
701 724 3.559238 AATGAGAACCACACAATTCGC 57.441 42.857 0.00 0.00 0.00 4.70
715 738 5.815740 ACACAATTCGCGGTAGAATTAGAAT 59.184 36.000 6.13 0.00 45.80 2.40
829 853 2.814336 CCCTCTTTTGACCTTTTCCTCG 59.186 50.000 0.00 0.00 0.00 4.63
1423 1546 2.764128 TCGGGCTGGAGATGGACC 60.764 66.667 0.00 0.00 0.00 4.46
1628 1751 4.933064 CCGCATCCTCGCCGAGAC 62.933 72.222 17.19 0.99 0.00 3.36
1833 1956 1.028330 CAGCGATGTGGTGGCTCATT 61.028 55.000 0.00 0.00 40.18 2.57
2103 2226 4.657824 CGCGACCCTGTGACCGTT 62.658 66.667 0.00 0.00 0.00 4.44
2248 2371 0.107214 GGGGCTCGTGGAAATGATCA 60.107 55.000 0.00 0.00 0.00 2.92
2250 2373 2.301346 GGGCTCGTGGAAATGATCATT 58.699 47.619 15.36 15.36 0.00 2.57
2278 2401 1.561643 TGGGAGAGACAAGCAGGTAG 58.438 55.000 0.00 0.00 0.00 3.18
2325 2470 4.406649 CACAGCAAATTTCCCCCAATATCT 59.593 41.667 0.00 0.00 0.00 1.98
2326 2471 5.598005 CACAGCAAATTTCCCCCAATATCTA 59.402 40.000 0.00 0.00 0.00 1.98
2379 2627 2.132762 GTGTTGGATGACGAGTCGTTT 58.867 47.619 20.91 10.72 41.37 3.60
2481 2729 2.693762 CGTCGGGTACAAGCGGAGA 61.694 63.158 0.00 0.00 0.00 3.71
2487 2735 1.551883 GGGTACAAGCGGAGAAACCTA 59.448 52.381 0.00 0.00 36.31 3.08
2577 2825 2.047465 CTGTCGCTGCTGGAGCTT 60.047 61.111 19.01 0.00 46.64 3.74
2694 2942 2.125106 GCCTCCGCCTCGACAAAT 60.125 61.111 0.00 0.00 0.00 2.32
2695 2943 1.143183 GCCTCCGCCTCGACAAATA 59.857 57.895 0.00 0.00 0.00 1.40
2696 2944 0.876342 GCCTCCGCCTCGACAAATAG 60.876 60.000 0.00 0.00 0.00 1.73
2698 2946 0.876342 CTCCGCCTCGACAAATAGCC 60.876 60.000 0.00 0.00 0.00 3.93
2806 3070 6.019801 GTCAGTACATACATTTCGTAAGGCTG 60.020 42.308 0.00 0.00 32.59 4.85
2807 3071 4.809426 AGTACATACATTTCGTAAGGCTGC 59.191 41.667 0.00 0.00 32.59 5.25
3010 3286 4.342427 GCATGGAGCCCATCAACA 57.658 55.556 3.93 0.00 43.15 3.33
3219 3495 2.805546 GTCAGCCTCGCCATCGTA 59.194 61.111 0.00 0.00 36.96 3.43
3220 3496 1.141019 GTCAGCCTCGCCATCGTAA 59.859 57.895 0.00 0.00 36.96 3.18
3816 4152 1.664321 GAGGCGCTTAGGGTCTTCGA 61.664 60.000 7.64 0.00 28.57 3.71
3860 4196 7.094075 TGTGTAGGATTAGTTGTATCGTGACTT 60.094 37.037 0.00 0.00 0.00 3.01
3893 4229 2.375766 CGTGCGTGAAGGCTGAGAC 61.376 63.158 0.00 0.00 0.00 3.36
3922 4258 0.599728 CTGATCGAAGCCTGCTAGCC 60.600 60.000 13.29 0.00 0.00 3.93
4015 4362 6.271488 TCATTGGAGTTAATTGCAGGAAAG 57.729 37.500 0.00 0.00 0.00 2.62
4017 4364 5.705609 TTGGAGTTAATTGCAGGAAAGTC 57.294 39.130 0.00 0.00 0.00 3.01
4018 4365 4.985538 TGGAGTTAATTGCAGGAAAGTCT 58.014 39.130 10.04 0.00 0.00 3.24
4020 4367 5.221925 TGGAGTTAATTGCAGGAAAGTCTCT 60.222 40.000 10.04 0.00 0.00 3.10
4021 4368 5.707764 GGAGTTAATTGCAGGAAAGTCTCTT 59.292 40.000 10.04 0.00 0.00 2.85
4074 4429 5.396362 CGTAACTCATTTGCAGAAAACACTG 59.604 40.000 0.00 0.00 40.43 3.66
4095 4450 2.018542 TCGAGGGATGGCGTTTTAAG 57.981 50.000 0.00 0.00 0.00 1.85
4105 4460 5.447548 GGATGGCGTTTTAAGCGTGTTTATA 60.448 40.000 2.90 0.00 35.00 0.98
4108 4463 4.258131 GGCGTTTTAAGCGTGTTTATAACG 59.742 41.667 19.54 19.54 43.93 3.18
4109 4464 5.072169 GCGTTTTAAGCGTGTTTATAACGA 58.928 37.500 24.39 0.00 43.88 3.85
4110 4465 5.221682 GCGTTTTAAGCGTGTTTATAACGAG 59.778 40.000 24.39 7.71 43.88 4.18
4111 4466 5.221682 CGTTTTAAGCGTGTTTATAACGAGC 59.778 40.000 19.30 0.00 43.88 5.03
4112 4467 6.301861 GTTTTAAGCGTGTTTATAACGAGCT 58.698 36.000 0.00 0.00 44.63 4.09
4114 4469 6.470557 TTAAGCGTGTTTATAACGAGCTTT 57.529 33.333 20.74 11.07 46.81 3.51
4115 4470 4.322101 AGCGTGTTTATAACGAGCTTTG 57.678 40.909 0.00 0.00 43.68 2.77
4116 4471 2.838452 GCGTGTTTATAACGAGCTTTGC 59.162 45.455 0.00 0.00 43.68 3.68
4117 4472 3.424433 GCGTGTTTATAACGAGCTTTGCT 60.424 43.478 0.00 0.00 43.68 3.91
4118 4473 4.201647 GCGTGTTTATAACGAGCTTTGCTA 60.202 41.667 0.00 0.00 43.68 3.49
4119 4474 5.481472 CGTGTTTATAACGAGCTTTGCTAG 58.519 41.667 0.00 0.00 43.68 3.42
4120 4475 5.287752 CGTGTTTATAACGAGCTTTGCTAGA 59.712 40.000 6.67 0.00 43.68 2.43
4121 4476 6.506513 CGTGTTTATAACGAGCTTTGCTAGAG 60.507 42.308 6.67 0.00 43.68 2.43
4122 4477 5.291128 TGTTTATAACGAGCTTTGCTAGAGC 59.709 40.000 6.67 0.00 39.88 4.09
4130 4485 3.238108 GCTTTGCTAGAGCTACAGACA 57.762 47.619 2.72 0.00 42.66 3.41
4131 4486 3.589988 GCTTTGCTAGAGCTACAGACAA 58.410 45.455 2.72 0.00 42.66 3.18
4132 4487 3.616379 GCTTTGCTAGAGCTACAGACAAG 59.384 47.826 2.72 0.00 42.66 3.16
4133 4488 4.619394 GCTTTGCTAGAGCTACAGACAAGA 60.619 45.833 2.72 0.00 42.66 3.02
4134 4489 4.442375 TTGCTAGAGCTACAGACAAGAC 57.558 45.455 2.72 0.00 42.66 3.01
4135 4490 3.691575 TGCTAGAGCTACAGACAAGACT 58.308 45.455 2.72 0.00 42.66 3.24
4136 4491 4.082845 TGCTAGAGCTACAGACAAGACTT 58.917 43.478 2.72 0.00 42.66 3.01
4137 4492 5.254115 TGCTAGAGCTACAGACAAGACTTA 58.746 41.667 2.72 0.00 42.66 2.24
4138 4493 5.124138 TGCTAGAGCTACAGACAAGACTTAC 59.876 44.000 2.72 0.00 42.66 2.34
4139 4494 5.449451 GCTAGAGCTACAGACAAGACTTACC 60.449 48.000 0.00 0.00 38.21 2.85
4140 4495 3.440872 AGAGCTACAGACAAGACTTACCG 59.559 47.826 0.00 0.00 0.00 4.02
4141 4496 3.418995 AGCTACAGACAAGACTTACCGA 58.581 45.455 0.00 0.00 0.00 4.69
4142 4497 3.190953 AGCTACAGACAAGACTTACCGAC 59.809 47.826 0.00 0.00 0.00 4.79
4143 4498 3.190953 GCTACAGACAAGACTTACCGACT 59.809 47.826 0.00 0.00 0.00 4.18
4144 4499 4.394300 GCTACAGACAAGACTTACCGACTA 59.606 45.833 0.00 0.00 0.00 2.59
4145 4500 5.106396 GCTACAGACAAGACTTACCGACTAA 60.106 44.000 0.00 0.00 0.00 2.24
4146 4501 5.373981 ACAGACAAGACTTACCGACTAAG 57.626 43.478 0.00 0.00 38.32 2.18
4147 4502 4.826183 ACAGACAAGACTTACCGACTAAGT 59.174 41.667 5.45 5.45 46.68 2.24
4148 4503 5.154932 CAGACAAGACTTACCGACTAAGTG 58.845 45.833 9.46 0.86 44.45 3.16
4149 4504 3.910648 ACAAGACTTACCGACTAAGTGC 58.089 45.455 9.46 3.63 44.45 4.40
4150 4505 3.573110 ACAAGACTTACCGACTAAGTGCT 59.427 43.478 9.46 5.29 44.45 4.40
4151 4506 4.763793 ACAAGACTTACCGACTAAGTGCTA 59.236 41.667 9.46 0.00 44.45 3.49
4152 4507 4.961435 AGACTTACCGACTAAGTGCTAC 57.039 45.455 9.46 0.00 44.45 3.58
4153 4508 4.330250 AGACTTACCGACTAAGTGCTACA 58.670 43.478 9.46 0.00 44.45 2.74
4154 4509 4.395542 AGACTTACCGACTAAGTGCTACAG 59.604 45.833 9.46 0.00 44.45 2.74
4155 4510 3.442977 ACTTACCGACTAAGTGCTACAGG 59.557 47.826 5.06 0.00 43.06 4.00
4156 4511 0.531200 ACCGACTAAGTGCTACAGGC 59.469 55.000 0.00 0.00 42.22 4.85
4157 4512 0.818296 CCGACTAAGTGCTACAGGCT 59.182 55.000 0.00 0.00 42.39 4.58
4158 4513 1.469940 CCGACTAAGTGCTACAGGCTG 60.470 57.143 14.16 14.16 42.39 4.85
4159 4514 1.472878 CGACTAAGTGCTACAGGCTGA 59.527 52.381 23.66 3.89 42.39 4.26
4160 4515 2.099921 CGACTAAGTGCTACAGGCTGAT 59.900 50.000 23.66 8.18 42.39 2.90
4161 4516 3.452474 GACTAAGTGCTACAGGCTGATG 58.548 50.000 23.66 13.87 42.39 3.07
4162 4517 2.834549 ACTAAGTGCTACAGGCTGATGT 59.165 45.455 23.66 1.62 42.39 3.06
4163 4518 4.023980 ACTAAGTGCTACAGGCTGATGTA 58.976 43.478 23.66 9.74 42.39 2.29
4164 4519 2.969628 AGTGCTACAGGCTGATGTAC 57.030 50.000 23.66 20.26 42.39 2.90
4165 4520 1.482593 AGTGCTACAGGCTGATGTACC 59.517 52.381 23.66 4.19 42.39 3.34
4166 4521 1.207089 GTGCTACAGGCTGATGTACCA 59.793 52.381 23.66 6.25 42.39 3.25
4167 4522 2.118679 TGCTACAGGCTGATGTACCAT 58.881 47.619 23.66 0.00 42.39 3.55
4168 4523 3.069586 GTGCTACAGGCTGATGTACCATA 59.930 47.826 23.66 0.00 42.39 2.74
4169 4524 3.069586 TGCTACAGGCTGATGTACCATAC 59.930 47.826 23.66 0.00 42.39 2.39
4170 4525 3.069586 GCTACAGGCTGATGTACCATACA 59.930 47.826 23.66 0.00 39.49 2.29
4171 4526 3.543680 ACAGGCTGATGTACCATACAC 57.456 47.619 23.66 0.00 42.23 2.90
4172 4527 3.107601 ACAGGCTGATGTACCATACACT 58.892 45.455 23.66 0.00 42.23 3.55
4173 4528 4.286707 ACAGGCTGATGTACCATACACTA 58.713 43.478 23.66 0.00 42.23 2.74
4174 4529 4.714802 ACAGGCTGATGTACCATACACTAA 59.285 41.667 23.66 0.00 42.23 2.24
4175 4530 5.366768 ACAGGCTGATGTACCATACACTAAT 59.633 40.000 23.66 0.00 42.23 1.73
4176 4531 6.126768 ACAGGCTGATGTACCATACACTAATT 60.127 38.462 23.66 0.00 42.23 1.40
4177 4532 6.203530 CAGGCTGATGTACCATACACTAATTG 59.796 42.308 9.42 0.00 42.23 2.32
4178 4533 5.470098 GGCTGATGTACCATACACTAATTGG 59.530 44.000 0.00 0.00 42.23 3.16
4179 4534 6.288294 GCTGATGTACCATACACTAATTGGA 58.712 40.000 0.00 0.00 42.23 3.53
4180 4535 6.765989 GCTGATGTACCATACACTAATTGGAA 59.234 38.462 0.00 0.00 42.23 3.53
4181 4536 7.282224 GCTGATGTACCATACACTAATTGGAAA 59.718 37.037 0.00 0.00 42.23 3.13
4182 4537 8.500753 TGATGTACCATACACTAATTGGAAAC 57.499 34.615 0.00 0.00 42.23 2.78
4183 4538 8.103935 TGATGTACCATACACTAATTGGAAACA 58.896 33.333 0.00 0.00 42.23 2.83
4184 4539 7.915293 TGTACCATACACTAATTGGAAACAG 57.085 36.000 0.00 0.00 36.02 3.16
4185 4540 7.455058 TGTACCATACACTAATTGGAAACAGT 58.545 34.615 0.00 0.00 36.02 3.55
4186 4541 6.817765 ACCATACACTAATTGGAAACAGTG 57.182 37.500 0.00 0.00 43.89 3.66
4187 4542 5.710099 ACCATACACTAATTGGAAACAGTGG 59.290 40.000 8.30 5.41 43.08 4.00
4188 4543 5.943416 CCATACACTAATTGGAAACAGTGGA 59.057 40.000 8.30 0.73 43.08 4.02
4189 4544 6.128007 CCATACACTAATTGGAAACAGTGGAC 60.128 42.308 8.30 0.00 43.08 4.02
4190 4545 4.142038 ACACTAATTGGAAACAGTGGACC 58.858 43.478 8.30 0.00 43.08 4.46
4191 4546 3.506067 CACTAATTGGAAACAGTGGACCC 59.494 47.826 0.00 0.00 44.54 4.46
4192 4547 2.765689 AATTGGAAACAGTGGACCCA 57.234 45.000 0.00 0.00 44.54 4.51
4193 4548 2.999185 ATTGGAAACAGTGGACCCAT 57.001 45.000 0.00 0.00 44.54 4.00
4194 4549 4.396357 AATTGGAAACAGTGGACCCATA 57.604 40.909 0.00 0.00 44.54 2.74
4195 4550 3.885976 TTGGAAACAGTGGACCCATAA 57.114 42.857 0.00 0.00 44.54 1.90
4196 4551 4.396357 TTGGAAACAGTGGACCCATAAT 57.604 40.909 0.00 0.00 44.54 1.28
4197 4552 4.396357 TGGAAACAGTGGACCCATAATT 57.604 40.909 0.00 0.00 35.01 1.40
4198 4553 4.085733 TGGAAACAGTGGACCCATAATTG 58.914 43.478 0.00 0.00 35.01 2.32
4199 4554 4.202620 TGGAAACAGTGGACCCATAATTGA 60.203 41.667 0.00 0.00 35.01 2.57
4200 4555 4.770010 GGAAACAGTGGACCCATAATTGAA 59.230 41.667 0.00 0.00 0.00 2.69
4201 4556 5.245075 GGAAACAGTGGACCCATAATTGAAA 59.755 40.000 0.00 0.00 0.00 2.69
4202 4557 6.239458 GGAAACAGTGGACCCATAATTGAAAA 60.239 38.462 0.00 0.00 0.00 2.29
4203 4558 6.933514 AACAGTGGACCCATAATTGAAAAT 57.066 33.333 0.00 0.00 0.00 1.82
4204 4559 6.530019 ACAGTGGACCCATAATTGAAAATC 57.470 37.500 0.00 0.00 0.00 2.17
4205 4560 6.015918 ACAGTGGACCCATAATTGAAAATCA 58.984 36.000 0.00 0.00 0.00 2.57
4206 4561 6.153340 ACAGTGGACCCATAATTGAAAATCAG 59.847 38.462 0.00 0.00 0.00 2.90
4207 4562 5.658190 AGTGGACCCATAATTGAAAATCAGG 59.342 40.000 0.00 0.00 0.00 3.86
4208 4563 4.961730 TGGACCCATAATTGAAAATCAGGG 59.038 41.667 0.00 0.00 40.88 4.45
4209 4564 5.208121 GGACCCATAATTGAAAATCAGGGA 58.792 41.667 0.00 0.00 38.43 4.20
4210 4565 5.302823 GGACCCATAATTGAAAATCAGGGAG 59.697 44.000 0.00 0.00 38.43 4.30
4211 4566 5.211201 ACCCATAATTGAAAATCAGGGAGG 58.789 41.667 0.00 0.00 38.43 4.30
4212 4567 5.043432 ACCCATAATTGAAAATCAGGGAGGA 60.043 40.000 0.00 0.00 38.43 3.71
4213 4568 5.898972 CCCATAATTGAAAATCAGGGAGGAA 59.101 40.000 0.00 0.00 37.22 3.36
4214 4569 6.041296 CCCATAATTGAAAATCAGGGAGGAAG 59.959 42.308 0.00 0.00 37.22 3.46
4215 4570 6.608808 CCATAATTGAAAATCAGGGAGGAAGT 59.391 38.462 0.00 0.00 0.00 3.01
4216 4571 5.990120 AATTGAAAATCAGGGAGGAAGTG 57.010 39.130 0.00 0.00 0.00 3.16
4217 4572 4.722526 TTGAAAATCAGGGAGGAAGTGA 57.277 40.909 0.00 0.00 0.00 3.41
4218 4573 4.934797 TGAAAATCAGGGAGGAAGTGAT 57.065 40.909 0.00 0.00 32.13 3.06
4219 4574 5.261040 TGAAAATCAGGGAGGAAGTGATT 57.739 39.130 0.00 0.00 41.62 2.57
4220 4575 5.012239 TGAAAATCAGGGAGGAAGTGATTG 58.988 41.667 0.00 0.00 39.47 2.67
4221 4576 3.659183 AATCAGGGAGGAAGTGATTGG 57.341 47.619 0.00 0.00 39.04 3.16
4222 4577 0.620556 TCAGGGAGGAAGTGATTGGC 59.379 55.000 0.00 0.00 0.00 4.52
4223 4578 0.745845 CAGGGAGGAAGTGATTGGCG 60.746 60.000 0.00 0.00 0.00 5.69
4224 4579 0.909610 AGGGAGGAAGTGATTGGCGA 60.910 55.000 0.00 0.00 0.00 5.54
4225 4580 0.462759 GGGAGGAAGTGATTGGCGAG 60.463 60.000 0.00 0.00 0.00 5.03
4226 4581 0.462759 GGAGGAAGTGATTGGCGAGG 60.463 60.000 0.00 0.00 0.00 4.63
4227 4582 0.250513 GAGGAAGTGATTGGCGAGGT 59.749 55.000 0.00 0.00 0.00 3.85
4228 4583 0.036010 AGGAAGTGATTGGCGAGGTG 60.036 55.000 0.00 0.00 0.00 4.00
4229 4584 0.321653 GGAAGTGATTGGCGAGGTGT 60.322 55.000 0.00 0.00 0.00 4.16
4230 4585 1.066430 GGAAGTGATTGGCGAGGTGTA 60.066 52.381 0.00 0.00 0.00 2.90
4231 4586 2.271800 GAAGTGATTGGCGAGGTGTAG 58.728 52.381 0.00 0.00 0.00 2.74
4232 4587 1.557099 AGTGATTGGCGAGGTGTAGA 58.443 50.000 0.00 0.00 0.00 2.59
4233 4588 1.899814 AGTGATTGGCGAGGTGTAGAA 59.100 47.619 0.00 0.00 0.00 2.10
4234 4589 2.501723 AGTGATTGGCGAGGTGTAGAAT 59.498 45.455 0.00 0.00 0.00 2.40
4235 4590 3.055094 AGTGATTGGCGAGGTGTAGAATT 60.055 43.478 0.00 0.00 0.00 2.17
4236 4591 3.689649 GTGATTGGCGAGGTGTAGAATTT 59.310 43.478 0.00 0.00 0.00 1.82
4237 4592 4.156008 GTGATTGGCGAGGTGTAGAATTTT 59.844 41.667 0.00 0.00 0.00 1.82
4238 4593 4.394920 TGATTGGCGAGGTGTAGAATTTTC 59.605 41.667 0.00 0.00 0.00 2.29
4239 4594 2.706890 TGGCGAGGTGTAGAATTTTCC 58.293 47.619 0.00 0.00 0.00 3.13
4240 4595 1.664151 GGCGAGGTGTAGAATTTTCCG 59.336 52.381 0.00 0.00 0.00 4.30
4241 4596 2.344025 GCGAGGTGTAGAATTTTCCGT 58.656 47.619 0.00 0.00 0.00 4.69
4242 4597 2.740447 GCGAGGTGTAGAATTTTCCGTT 59.260 45.455 0.00 0.00 0.00 4.44
4243 4598 3.187842 GCGAGGTGTAGAATTTTCCGTTT 59.812 43.478 0.00 0.00 0.00 3.60
4244 4599 4.389687 GCGAGGTGTAGAATTTTCCGTTTA 59.610 41.667 0.00 0.00 0.00 2.01
4245 4600 5.064325 GCGAGGTGTAGAATTTTCCGTTTAT 59.936 40.000 0.00 0.00 0.00 1.40
4246 4601 6.256321 GCGAGGTGTAGAATTTTCCGTTTATA 59.744 38.462 0.00 0.00 0.00 0.98
4247 4602 7.201548 GCGAGGTGTAGAATTTTCCGTTTATAA 60.202 37.037 0.00 0.00 0.00 0.98
4248 4603 8.112449 CGAGGTGTAGAATTTTCCGTTTATAAC 58.888 37.037 0.00 0.00 0.00 1.89
4249 4604 8.851541 AGGTGTAGAATTTTCCGTTTATAACA 57.148 30.769 0.00 0.00 0.00 2.41
4250 4605 8.943002 AGGTGTAGAATTTTCCGTTTATAACAG 58.057 33.333 0.00 0.00 0.00 3.16
4251 4606 8.938906 GGTGTAGAATTTTCCGTTTATAACAGA 58.061 33.333 0.00 0.00 0.00 3.41
4260 4615 4.225492 TCCGTTTATAACAGATGGGACCAA 59.775 41.667 0.00 0.00 0.00 3.67
4263 4618 5.646360 CGTTTATAACAGATGGGACCAAGTT 59.354 40.000 0.00 4.02 0.00 2.66
4264 4619 6.403200 CGTTTATAACAGATGGGACCAAGTTG 60.403 42.308 13.81 0.00 0.00 3.16
4268 4623 2.376518 ACAGATGGGACCAAGTTGTCAT 59.623 45.455 1.45 0.62 36.97 3.06
4271 4626 3.846588 AGATGGGACCAAGTTGTCATAGT 59.153 43.478 1.45 0.00 36.97 2.12
4294 4649 7.480810 AGTTGACTTCGTAAAAGAAAATTGCT 58.519 30.769 0.00 0.00 0.00 3.91
4305 4660 4.258935 AGAAAATTGCTACATGTACGCG 57.741 40.909 3.53 3.53 0.00 6.01
4322 4677 4.735662 ACGCGATGAATAGTCTACTCTC 57.264 45.455 15.93 0.00 0.00 3.20
4327 4682 6.293190 CGCGATGAATAGTCTACTCTCTCTTT 60.293 42.308 0.00 0.00 0.00 2.52
4329 4684 7.589954 GCGATGAATAGTCTACTCTCTCTTTTC 59.410 40.741 0.00 0.00 0.00 2.29
4330 4685 8.616942 CGATGAATAGTCTACTCTCTCTTTTCA 58.383 37.037 0.00 0.00 34.45 2.69
4774 5129 1.592669 CATCAAGTAGCTCGGCCGG 60.593 63.158 27.83 17.41 0.00 6.13
4789 5144 1.819632 CCGGTGAGCAATGCTACCC 60.820 63.158 20.26 16.38 39.88 3.69
4797 5152 3.071023 TGAGCAATGCTACCCCATACTAC 59.929 47.826 8.12 0.00 39.88 2.73
4798 5153 2.372172 AGCAATGCTACCCCATACTACC 59.628 50.000 5.69 0.00 36.99 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.972713 AGTCTTCTTCTTGTAGGTGGCA 59.027 45.455 0.00 0.00 0.00 4.92
1 2 3.006967 TCAGTCTTCTTCTTGTAGGTGGC 59.993 47.826 0.00 0.00 0.00 5.01
2 3 4.039245 TGTCAGTCTTCTTCTTGTAGGTGG 59.961 45.833 0.00 0.00 0.00 4.61
3 4 4.985409 GTGTCAGTCTTCTTCTTGTAGGTG 59.015 45.833 0.00 0.00 0.00 4.00
4 5 4.896482 AGTGTCAGTCTTCTTCTTGTAGGT 59.104 41.667 0.00 0.00 0.00 3.08
5 6 5.010112 TGAGTGTCAGTCTTCTTCTTGTAGG 59.990 44.000 9.09 0.00 0.00 3.18
6 7 6.078202 TGAGTGTCAGTCTTCTTCTTGTAG 57.922 41.667 9.09 0.00 0.00 2.74
7 8 6.465439 TTGAGTGTCAGTCTTCTTCTTGTA 57.535 37.500 9.09 0.00 0.00 2.41
8 9 5.344743 TTGAGTGTCAGTCTTCTTCTTGT 57.655 39.130 9.09 0.00 0.00 3.16
9 10 5.277250 GCTTTGAGTGTCAGTCTTCTTCTTG 60.277 44.000 9.09 0.00 0.00 3.02
10 11 4.813697 GCTTTGAGTGTCAGTCTTCTTCTT 59.186 41.667 9.09 0.00 0.00 2.52
11 12 4.141846 TGCTTTGAGTGTCAGTCTTCTTCT 60.142 41.667 9.09 0.00 0.00 2.85
12 13 4.122776 TGCTTTGAGTGTCAGTCTTCTTC 58.877 43.478 9.09 0.00 0.00 2.87
13 14 4.142609 TGCTTTGAGTGTCAGTCTTCTT 57.857 40.909 9.09 0.00 0.00 2.52
14 15 3.827008 TGCTTTGAGTGTCAGTCTTCT 57.173 42.857 9.09 0.00 0.00 2.85
15 16 3.122613 CGATGCTTTGAGTGTCAGTCTTC 59.877 47.826 9.09 0.00 0.00 2.87
16 17 3.062763 CGATGCTTTGAGTGTCAGTCTT 58.937 45.455 9.09 0.00 0.00 3.01
17 18 2.681706 CGATGCTTTGAGTGTCAGTCT 58.318 47.619 9.09 0.00 0.00 3.24
18 19 1.127582 GCGATGCTTTGAGTGTCAGTC 59.872 52.381 0.26 0.26 0.00 3.51
19 20 1.151668 GCGATGCTTTGAGTGTCAGT 58.848 50.000 0.00 0.00 0.00 3.41
20 21 0.445436 GGCGATGCTTTGAGTGTCAG 59.555 55.000 0.00 0.00 0.00 3.51
21 22 1.291184 CGGCGATGCTTTGAGTGTCA 61.291 55.000 0.00 0.00 0.00 3.58
22 23 1.014044 TCGGCGATGCTTTGAGTGTC 61.014 55.000 4.99 0.00 0.00 3.67
23 24 1.005037 TCGGCGATGCTTTGAGTGT 60.005 52.632 4.99 0.00 0.00 3.55
24 25 1.291184 TGTCGGCGATGCTTTGAGTG 61.291 55.000 14.79 0.00 0.00 3.51
25 26 0.391661 ATGTCGGCGATGCTTTGAGT 60.392 50.000 14.79 0.00 0.00 3.41
26 27 0.302890 GATGTCGGCGATGCTTTGAG 59.697 55.000 14.79 0.00 0.00 3.02
27 28 0.390998 TGATGTCGGCGATGCTTTGA 60.391 50.000 14.79 0.00 0.00 2.69
28 29 0.659427 ATGATGTCGGCGATGCTTTG 59.341 50.000 14.79 0.00 0.00 2.77
29 30 0.659427 CATGATGTCGGCGATGCTTT 59.341 50.000 14.79 0.00 0.00 3.51
30 31 0.179076 TCATGATGTCGGCGATGCTT 60.179 50.000 14.79 0.00 0.00 3.91
31 32 0.877649 GTCATGATGTCGGCGATGCT 60.878 55.000 14.79 0.00 0.00 3.79
32 33 0.877649 AGTCATGATGTCGGCGATGC 60.878 55.000 14.79 6.25 0.00 3.91
33 34 0.857287 CAGTCATGATGTCGGCGATG 59.143 55.000 14.79 7.03 0.00 3.84
34 35 0.877649 GCAGTCATGATGTCGGCGAT 60.878 55.000 14.79 0.00 0.00 4.58
35 36 1.519234 GCAGTCATGATGTCGGCGA 60.519 57.895 4.99 4.99 0.00 5.54
36 37 2.528743 GGCAGTCATGATGTCGGCG 61.529 63.158 0.00 0.00 29.11 6.46
37 38 0.816825 ATGGCAGTCATGATGTCGGC 60.817 55.000 0.00 6.29 34.22 5.54
38 39 1.332686 CAATGGCAGTCATGATGTCGG 59.667 52.381 0.00 0.00 35.99 4.79
39 40 1.268386 GCAATGGCAGTCATGATGTCG 60.268 52.381 0.00 0.00 40.72 4.35
40 41 1.066605 GGCAATGGCAGTCATGATGTC 59.933 52.381 0.58 0.62 43.71 3.06
41 42 1.108776 GGCAATGGCAGTCATGATGT 58.891 50.000 0.58 0.00 43.71 3.06
42 43 1.107945 TGGCAATGGCAGTCATGATG 58.892 50.000 5.05 0.00 43.71 3.07
43 44 3.600187 TGGCAATGGCAGTCATGAT 57.400 47.368 5.05 0.00 43.71 2.45
51 52 2.676121 CCGGAACTGGCAATGGCA 60.676 61.111 9.67 9.67 43.71 4.92
52 53 2.676471 ACCGGAACTGGCAATGGC 60.676 61.111 9.46 0.00 40.13 4.40
53 54 0.893270 TTGACCGGAACTGGCAATGG 60.893 55.000 9.46 0.00 0.00 3.16
54 55 0.240945 GTTGACCGGAACTGGCAATG 59.759 55.000 9.46 0.00 31.16 2.82
55 56 0.893727 GGTTGACCGGAACTGGCAAT 60.894 55.000 9.46 0.00 31.16 3.56
56 57 1.527380 GGTTGACCGGAACTGGCAA 60.527 57.895 9.46 0.00 0.00 4.52
57 58 2.112297 GGTTGACCGGAACTGGCA 59.888 61.111 9.46 0.00 0.00 4.92
67 68 0.389757 GGCTCTAGATCCGGTTGACC 59.610 60.000 0.00 0.00 0.00 4.02
68 69 0.389757 GGGCTCTAGATCCGGTTGAC 59.610 60.000 6.54 0.00 0.00 3.18
69 70 0.759436 GGGGCTCTAGATCCGGTTGA 60.759 60.000 6.54 0.00 0.00 3.18
70 71 1.749033 GGGGCTCTAGATCCGGTTG 59.251 63.158 6.54 0.00 0.00 3.77
71 72 1.459730 GGGGGCTCTAGATCCGGTT 60.460 63.158 6.54 0.00 0.00 4.44
72 73 2.201771 GGGGGCTCTAGATCCGGT 59.798 66.667 6.54 0.00 0.00 5.28
91 92 4.382541 GTTTGGGCTGGGGGAGGG 62.383 72.222 0.00 0.00 0.00 4.30
92 93 3.159104 TTGTTTGGGCTGGGGGAGG 62.159 63.158 0.00 0.00 0.00 4.30
93 94 1.908299 GTTGTTTGGGCTGGGGGAG 60.908 63.158 0.00 0.00 0.00 4.30
94 95 2.200092 GTTGTTTGGGCTGGGGGA 59.800 61.111 0.00 0.00 0.00 4.81
95 96 2.087857 TAGGTTGTTTGGGCTGGGGG 62.088 60.000 0.00 0.00 0.00 5.40
96 97 0.178947 TTAGGTTGTTTGGGCTGGGG 60.179 55.000 0.00 0.00 0.00 4.96
97 98 0.966179 GTTAGGTTGTTTGGGCTGGG 59.034 55.000 0.00 0.00 0.00 4.45
98 99 0.966179 GGTTAGGTTGTTTGGGCTGG 59.034 55.000 0.00 0.00 0.00 4.85
99 100 1.613437 CTGGTTAGGTTGTTTGGGCTG 59.387 52.381 0.00 0.00 0.00 4.85
100 101 1.995376 CTGGTTAGGTTGTTTGGGCT 58.005 50.000 0.00 0.00 0.00 5.19
101 102 0.317160 GCTGGTTAGGTTGTTTGGGC 59.683 55.000 0.00 0.00 0.00 5.36
102 103 0.966179 GGCTGGTTAGGTTGTTTGGG 59.034 55.000 0.00 0.00 0.00 4.12
103 104 1.886542 GAGGCTGGTTAGGTTGTTTGG 59.113 52.381 0.00 0.00 0.00 3.28
104 105 1.886542 GGAGGCTGGTTAGGTTGTTTG 59.113 52.381 0.00 0.00 0.00 2.93
105 106 1.497286 TGGAGGCTGGTTAGGTTGTTT 59.503 47.619 0.00 0.00 0.00 2.83
106 107 1.073923 CTGGAGGCTGGTTAGGTTGTT 59.926 52.381 0.00 0.00 0.00 2.83
107 108 0.693049 CTGGAGGCTGGTTAGGTTGT 59.307 55.000 0.00 0.00 0.00 3.32
108 109 0.984230 TCTGGAGGCTGGTTAGGTTG 59.016 55.000 0.00 0.00 0.00 3.77
109 110 1.840635 GATCTGGAGGCTGGTTAGGTT 59.159 52.381 0.00 0.00 0.00 3.50
110 111 1.501582 GATCTGGAGGCTGGTTAGGT 58.498 55.000 0.00 0.00 0.00 3.08
111 112 0.761802 GGATCTGGAGGCTGGTTAGG 59.238 60.000 0.00 0.00 0.00 2.69
112 113 0.390860 CGGATCTGGAGGCTGGTTAG 59.609 60.000 0.00 0.00 0.00 2.34
113 114 1.048724 CCGGATCTGGAGGCTGGTTA 61.049 60.000 16.28 0.00 0.00 2.85
114 115 2.370445 CCGGATCTGGAGGCTGGTT 61.370 63.158 16.28 0.00 0.00 3.67
115 116 2.765807 CCGGATCTGGAGGCTGGT 60.766 66.667 16.28 0.00 0.00 4.00
116 117 4.247380 GCCGGATCTGGAGGCTGG 62.247 72.222 25.54 0.00 46.83 4.85
120 121 2.281830 GGATAGCCGGATCTGGAGG 58.718 63.158 25.54 8.59 0.00 4.30
131 132 4.990553 GGCGGCCTTCGGATAGCC 62.991 72.222 12.87 8.38 43.53 3.93
144 145 3.957535 GATGCAAGATGCCGGCGG 61.958 66.667 24.35 24.35 44.23 6.13
145 146 4.303603 CGATGCAAGATGCCGGCG 62.304 66.667 23.90 8.09 44.23 6.46
146 147 3.957535 CCGATGCAAGATGCCGGC 61.958 66.667 22.73 22.73 44.23 6.13
148 149 2.711311 CACCGATGCAAGATGCCG 59.289 61.111 0.00 0.00 44.23 5.69
149 150 2.484062 CCCACCGATGCAAGATGCC 61.484 63.158 0.00 0.00 44.23 4.40
150 151 2.484062 CCCCACCGATGCAAGATGC 61.484 63.158 0.00 0.00 45.29 3.91
151 152 0.180171 TACCCCACCGATGCAAGATG 59.820 55.000 0.00 0.00 0.00 2.90
152 153 0.469917 CTACCCCACCGATGCAAGAT 59.530 55.000 0.00 0.00 0.00 2.40
153 154 1.622607 CCTACCCCACCGATGCAAGA 61.623 60.000 0.00 0.00 0.00 3.02
154 155 1.153168 CCTACCCCACCGATGCAAG 60.153 63.158 0.00 0.00 0.00 4.01
155 156 1.613928 TCCTACCCCACCGATGCAA 60.614 57.895 0.00 0.00 0.00 4.08
156 157 2.039787 TCCTACCCCACCGATGCA 59.960 61.111 0.00 0.00 0.00 3.96
157 158 2.504519 GTCCTACCCCACCGATGC 59.495 66.667 0.00 0.00 0.00 3.91
158 159 1.113517 ATCGTCCTACCCCACCGATG 61.114 60.000 0.00 0.00 36.94 3.84
159 160 1.113517 CATCGTCCTACCCCACCGAT 61.114 60.000 0.00 0.00 38.68 4.18
160 161 1.755395 CATCGTCCTACCCCACCGA 60.755 63.158 0.00 0.00 0.00 4.69
161 162 1.324740 TTCATCGTCCTACCCCACCG 61.325 60.000 0.00 0.00 0.00 4.94
162 163 0.177373 GTTCATCGTCCTACCCCACC 59.823 60.000 0.00 0.00 0.00 4.61
163 164 0.899720 TGTTCATCGTCCTACCCCAC 59.100 55.000 0.00 0.00 0.00 4.61
164 165 1.553248 CTTGTTCATCGTCCTACCCCA 59.447 52.381 0.00 0.00 0.00 4.96
165 166 1.134491 CCTTGTTCATCGTCCTACCCC 60.134 57.143 0.00 0.00 0.00 4.95
166 167 1.134491 CCCTTGTTCATCGTCCTACCC 60.134 57.143 0.00 0.00 0.00 3.69
167 168 1.829222 TCCCTTGTTCATCGTCCTACC 59.171 52.381 0.00 0.00 0.00 3.18
168 169 3.522553 CTTCCCTTGTTCATCGTCCTAC 58.477 50.000 0.00 0.00 0.00 3.18
169 170 2.500098 CCTTCCCTTGTTCATCGTCCTA 59.500 50.000 0.00 0.00 0.00 2.94
170 171 1.279271 CCTTCCCTTGTTCATCGTCCT 59.721 52.381 0.00 0.00 0.00 3.85
171 172 1.679032 CCCTTCCCTTGTTCATCGTCC 60.679 57.143 0.00 0.00 0.00 4.79
172 173 1.278127 TCCCTTCCCTTGTTCATCGTC 59.722 52.381 0.00 0.00 0.00 4.20
173 174 1.003233 GTCCCTTCCCTTGTTCATCGT 59.997 52.381 0.00 0.00 0.00 3.73
174 175 1.679032 GGTCCCTTCCCTTGTTCATCG 60.679 57.143 0.00 0.00 0.00 3.84
175 176 1.354368 TGGTCCCTTCCCTTGTTCATC 59.646 52.381 0.00 0.00 0.00 2.92
176 177 1.075536 GTGGTCCCTTCCCTTGTTCAT 59.924 52.381 0.00 0.00 0.00 2.57
177 178 0.476771 GTGGTCCCTTCCCTTGTTCA 59.523 55.000 0.00 0.00 0.00 3.18
178 179 0.251209 GGTGGTCCCTTCCCTTGTTC 60.251 60.000 0.00 0.00 0.00 3.18
179 180 0.996762 TGGTGGTCCCTTCCCTTGTT 60.997 55.000 0.00 0.00 0.00 2.83
180 181 0.776080 ATGGTGGTCCCTTCCCTTGT 60.776 55.000 0.00 0.00 0.00 3.16
181 182 0.034089 GATGGTGGTCCCTTCCCTTG 60.034 60.000 0.00 0.00 32.43 3.61
182 183 0.178831 AGATGGTGGTCCCTTCCCTT 60.179 55.000 0.00 0.00 37.98 3.95
183 184 0.178831 AAGATGGTGGTCCCTTCCCT 60.179 55.000 0.00 0.00 37.98 4.20
184 185 0.256177 GAAGATGGTGGTCCCTTCCC 59.744 60.000 0.00 0.00 37.98 3.97
185 186 0.991920 TGAAGATGGTGGTCCCTTCC 59.008 55.000 0.00 0.00 37.98 3.46
186 187 2.879103 TTGAAGATGGTGGTCCCTTC 57.121 50.000 0.00 0.00 37.60 3.46
187 188 3.833559 ATTTGAAGATGGTGGTCCCTT 57.166 42.857 0.00 0.00 0.00 3.95
188 189 3.075882 TCAATTTGAAGATGGTGGTCCCT 59.924 43.478 0.00 0.00 0.00 4.20
189 190 3.430453 TCAATTTGAAGATGGTGGTCCC 58.570 45.455 0.00 0.00 0.00 4.46
190 191 4.678840 GCATCAATTTGAAGATGGTGGTCC 60.679 45.833 2.68 0.00 41.43 4.46
191 192 4.427312 GCATCAATTTGAAGATGGTGGTC 58.573 43.478 2.68 0.00 41.43 4.02
192 193 3.196254 GGCATCAATTTGAAGATGGTGGT 59.804 43.478 2.68 0.00 41.43 4.16
193 194 3.196039 TGGCATCAATTTGAAGATGGTGG 59.804 43.478 2.68 0.00 41.43 4.61
194 195 4.459390 TGGCATCAATTTGAAGATGGTG 57.541 40.909 2.68 0.00 41.43 4.17
195 196 4.081309 CCTTGGCATCAATTTGAAGATGGT 60.081 41.667 2.68 0.00 41.43 3.55
196 197 4.439057 CCTTGGCATCAATTTGAAGATGG 58.561 43.478 2.68 0.00 41.43 3.51
197 198 4.160814 TCCCTTGGCATCAATTTGAAGATG 59.839 41.667 2.68 0.00 43.42 2.90
198 199 4.161001 GTCCCTTGGCATCAATTTGAAGAT 59.839 41.667 2.68 0.00 31.75 2.40
199 200 3.511146 GTCCCTTGGCATCAATTTGAAGA 59.489 43.478 2.68 0.00 31.75 2.87
200 201 3.258872 TGTCCCTTGGCATCAATTTGAAG 59.741 43.478 2.68 0.00 31.75 3.02
201 202 3.237746 TGTCCCTTGGCATCAATTTGAA 58.762 40.909 2.68 0.00 31.75 2.69
202 203 2.886913 TGTCCCTTGGCATCAATTTGA 58.113 42.857 0.75 0.75 31.75 2.69
203 204 3.328505 GTTGTCCCTTGGCATCAATTTG 58.671 45.455 0.00 0.00 31.75 2.32
204 205 2.029110 CGTTGTCCCTTGGCATCAATTT 60.029 45.455 0.00 0.00 31.75 1.82
205 206 1.545582 CGTTGTCCCTTGGCATCAATT 59.454 47.619 0.00 0.00 31.75 2.32
206 207 1.176527 CGTTGTCCCTTGGCATCAAT 58.823 50.000 0.00 0.00 31.75 2.57
207 208 0.109532 TCGTTGTCCCTTGGCATCAA 59.890 50.000 0.00 0.00 0.00 2.57
208 209 0.321564 CTCGTTGTCCCTTGGCATCA 60.322 55.000 0.00 0.00 0.00 3.07
209 210 1.026718 CCTCGTTGTCCCTTGGCATC 61.027 60.000 0.00 0.00 0.00 3.91
210 211 1.002134 CCTCGTTGTCCCTTGGCAT 60.002 57.895 0.00 0.00 0.00 4.40
211 212 2.429930 CCTCGTTGTCCCTTGGCA 59.570 61.111 0.00 0.00 0.00 4.92
212 213 1.966451 CACCTCGTTGTCCCTTGGC 60.966 63.158 0.00 0.00 0.00 4.52
213 214 1.302511 CCACCTCGTTGTCCCTTGG 60.303 63.158 0.00 0.00 0.00 3.61
214 215 1.966451 GCCACCTCGTTGTCCCTTG 60.966 63.158 0.00 0.00 0.00 3.61
215 216 2.430367 GCCACCTCGTTGTCCCTT 59.570 61.111 0.00 0.00 0.00 3.95
216 217 3.637273 GGCCACCTCGTTGTCCCT 61.637 66.667 0.00 0.00 0.00 4.20
217 218 4.717313 GGGCCACCTCGTTGTCCC 62.717 72.222 4.39 0.00 0.00 4.46
218 219 2.969300 TTTGGGCCACCTCGTTGTCC 62.969 60.000 5.23 0.00 37.76 4.02
219 220 1.104577 TTTTGGGCCACCTCGTTGTC 61.105 55.000 5.23 0.00 37.76 3.18
220 221 1.076632 TTTTGGGCCACCTCGTTGT 60.077 52.632 5.23 0.00 37.76 3.32
221 222 1.362355 GTTTTGGGCCACCTCGTTG 59.638 57.895 5.23 0.00 37.76 4.10
222 223 1.830847 GGTTTTGGGCCACCTCGTT 60.831 57.895 5.23 0.00 37.76 3.85
223 224 2.203437 GGTTTTGGGCCACCTCGT 60.203 61.111 5.23 0.00 37.76 4.18
224 225 3.361977 CGGTTTTGGGCCACCTCG 61.362 66.667 5.23 4.38 37.76 4.63
225 226 1.971695 CTCGGTTTTGGGCCACCTC 60.972 63.158 5.23 0.00 37.76 3.85
226 227 1.789576 ATCTCGGTTTTGGGCCACCT 61.790 55.000 5.23 0.00 37.76 4.00
227 228 1.304134 ATCTCGGTTTTGGGCCACC 60.304 57.895 5.23 3.00 37.24 4.61
228 229 1.313091 GGATCTCGGTTTTGGGCCAC 61.313 60.000 5.23 0.00 0.00 5.01
229 230 1.001393 GGATCTCGGTTTTGGGCCA 60.001 57.895 0.00 0.00 0.00 5.36
320 321 4.864334 GAGTGCGCCCCCATCCTG 62.864 72.222 4.18 0.00 0.00 3.86
328 329 2.820037 GCAGTAAGGAGTGCGCCC 60.820 66.667 4.18 0.00 42.04 6.13
334 335 2.266055 GCAGCGGCAGTAAGGAGT 59.734 61.111 3.18 0.00 40.72 3.85
339 340 1.153369 GAGATGGCAGCGGCAGTAA 60.153 57.895 11.88 0.00 42.43 2.24
349 351 1.744639 GCTCGGATCTGAGATGGCA 59.255 57.895 31.68 0.00 38.28 4.92
353 355 1.523154 GGAGCGCTCGGATCTGAGAT 61.523 60.000 31.68 17.72 38.28 2.75
356 358 1.829970 ATGGAGCGCTCGGATCTGA 60.830 57.895 29.81 3.71 0.00 3.27
367 369 3.628989 TGGTCTACCCATGGAGCG 58.371 61.111 15.22 0.00 38.72 5.03
379 381 1.761174 GGATGTGTGGTGGTGGTCT 59.239 57.895 0.00 0.00 0.00 3.85
392 394 1.600636 CAGGTGCGTGTTGGGATGT 60.601 57.895 0.00 0.00 0.00 3.06
406 408 2.512286 CATGATGCGCCGACAGGT 60.512 61.111 4.18 0.00 40.50 4.00
408 410 3.945434 GGCATGATGCGCCGACAG 61.945 66.667 11.75 0.00 46.21 3.51
429 431 2.203582 GGTGGTGTGGGGGTTTCC 60.204 66.667 0.00 0.00 0.00 3.13
440 442 2.603473 TCCTCCCAGACGGTGGTG 60.603 66.667 5.44 0.00 46.37 4.17
441 443 2.283966 CTCCTCCCAGACGGTGGT 60.284 66.667 5.44 0.00 46.37 4.16
443 445 0.978146 ATTCCTCCTCCCAGACGGTG 60.978 60.000 0.00 0.00 0.00 4.94
445 447 1.041437 GTATTCCTCCTCCCAGACGG 58.959 60.000 0.00 0.00 0.00 4.79
446 448 0.669077 CGTATTCCTCCTCCCAGACG 59.331 60.000 0.00 0.00 0.00 4.18
447 449 1.041437 CCGTATTCCTCCTCCCAGAC 58.959 60.000 0.00 0.00 0.00 3.51
450 470 1.764854 GGCCGTATTCCTCCTCCCA 60.765 63.158 0.00 0.00 0.00 4.37
474 494 2.701780 CCTCTGCGACACTAGCGGT 61.702 63.158 0.00 0.00 41.47 5.68
477 497 1.336887 TGAAACCTCTGCGACACTAGC 60.337 52.381 0.00 0.00 0.00 3.42
488 508 3.986006 TCGCCGCGTGAAACCTCT 61.986 61.111 13.39 0.00 0.00 3.69
489 509 3.774702 GTCGCCGCGTGAAACCTC 61.775 66.667 13.39 0.00 0.00 3.85
491 511 4.364409 GTGTCGCCGCGTGAAACC 62.364 66.667 13.39 0.00 0.00 3.27
507 527 2.994995 TCATCACCGTCGGCAGGT 60.995 61.111 12.28 0.00 43.97 4.00
516 536 1.826024 CCCCCTCTTCTCATCACCG 59.174 63.158 0.00 0.00 0.00 4.94
538 558 1.192146 AACCCTAGCACCGAGAGCAA 61.192 55.000 0.00 0.00 0.00 3.91
542 562 1.980052 CCAAACCCTAGCACCGAGA 59.020 57.895 0.00 0.00 0.00 4.04
543 563 1.745489 GCCAAACCCTAGCACCGAG 60.745 63.158 0.00 0.00 0.00 4.63
544 564 2.349755 GCCAAACCCTAGCACCGA 59.650 61.111 0.00 0.00 0.00 4.69
577 599 1.131504 GAGAGAGACATTCGTGTCGCT 59.868 52.381 13.33 13.33 46.08 4.93
616 639 4.891992 AAGTAAAGTCTCCTTGCTGCTA 57.108 40.909 0.00 0.00 0.00 3.49
633 656 5.720041 ACCTACTACTTGATGCTCCAAAGTA 59.280 40.000 0.00 0.00 0.00 2.24
664 687 2.441375 TCATTAAGGATCGGGCCATCAA 59.559 45.455 4.39 0.00 0.00 2.57
665 688 2.038952 CTCATTAAGGATCGGGCCATCA 59.961 50.000 4.39 0.00 0.00 3.07
679 702 4.377943 CGCGAATTGTGTGGTTCTCATTAA 60.378 41.667 0.00 0.00 0.00 1.40
701 724 6.647067 GGTCATCCTCAATTCTAATTCTACCG 59.353 42.308 0.00 0.00 0.00 4.02
715 738 2.500229 GTTTTGACCGGTCATCCTCAA 58.500 47.619 36.52 24.35 39.64 3.02
718 741 3.644861 GGTTTTGACCGGTCATCCT 57.355 52.632 36.52 0.00 39.64 3.24
874 898 1.542881 TCCGGGGAACTTTGGGGAT 60.543 57.895 0.00 0.00 0.00 3.85
1423 1546 1.134530 GACCGCTTGATGACGTCGAG 61.135 60.000 11.62 7.48 40.75 4.04
1628 1751 1.572085 CTCCGTGTTGAGCAGCTTGG 61.572 60.000 0.00 0.00 0.00 3.61
1872 1995 2.456119 GGCAAGGATGAGCGACACG 61.456 63.158 0.00 0.00 0.00 4.49
2248 2371 4.916041 TGTCTCTCCCAATGTTGAGAAT 57.084 40.909 0.00 0.00 37.19 2.40
2250 2373 3.557898 GCTTGTCTCTCCCAATGTTGAGA 60.558 47.826 0.00 0.83 36.28 3.27
2325 2470 4.508551 AACCTGATCAATGGCTGACATA 57.491 40.909 0.00 0.00 39.40 2.29
2326 2471 3.377253 AACCTGATCAATGGCTGACAT 57.623 42.857 0.00 0.00 43.07 3.06
2379 2627 1.377072 CACCATCACCATCACCGCA 60.377 57.895 0.00 0.00 0.00 5.69
2481 2729 1.026718 GCCTGATGCGCTGTAGGTTT 61.027 55.000 20.13 0.00 32.85 3.27
2577 2825 2.736995 CGCTTGCTCGGGTTCGAA 60.737 61.111 0.00 0.00 45.47 3.71
2687 2935 2.677971 CCTGACCGGCTATTTGTCG 58.322 57.895 0.00 0.00 44.42 4.35
2806 3070 1.189403 GTCAGCGTACGTAGACATGC 58.811 55.000 26.29 7.08 0.00 4.06
2807 3071 2.174764 GTGTCAGCGTACGTAGACATG 58.825 52.381 31.95 17.09 42.28 3.21
2922 3198 3.573772 CTTGTCCTCCGCGAGCACA 62.574 63.158 8.23 2.53 27.38 4.57
3010 3286 4.446413 GAACCCGCGGATGGACGT 62.446 66.667 30.73 12.36 35.98 4.34
3247 3529 0.985490 GTGGGGCTGGAGAAGGATCT 60.985 60.000 0.00 0.00 39.10 2.75
3368 3683 3.722295 CGTTGCCGTGGTTGCGAT 61.722 61.111 0.00 0.00 0.00 4.58
3728 4061 4.720902 TCGTCTGGTACCCCGCGA 62.721 66.667 8.23 13.05 0.00 5.87
3731 4064 2.496291 GGGATCGTCTGGTACCCCG 61.496 68.421 10.07 9.36 35.00 5.73
3816 4152 6.655003 CCTACACAGTACAGAAATTCCAACAT 59.345 38.462 0.00 0.00 0.00 2.71
3860 4196 1.585517 CACGTTCCATGCATTGCCA 59.414 52.632 6.12 0.00 0.00 4.92
3922 4258 2.480419 GTGATCACTTGGAAACCGACTG 59.520 50.000 18.83 0.00 0.00 3.51
3973 4312 8.977412 TCCAATGAATCTGATACAACAGTACTA 58.023 33.333 0.00 0.00 38.79 1.82
3974 4313 7.851228 TCCAATGAATCTGATACAACAGTACT 58.149 34.615 0.00 0.00 38.79 2.73
4031 4386 0.502275 GCAACACGCGGTGAATTTTG 59.498 50.000 12.47 8.00 36.96 2.44
4032 4387 2.880091 GCAACACGCGGTGAATTTT 58.120 47.368 12.47 0.00 36.96 1.82
4046 4401 3.536158 TCTGCAAATGAGTTACGCAAC 57.464 42.857 0.00 0.00 34.67 4.17
4060 4415 2.807967 CCTCGATCAGTGTTTTCTGCAA 59.192 45.455 0.00 0.00 35.63 4.08
4074 4429 2.234300 TAAAACGCCATCCCTCGATC 57.766 50.000 0.00 0.00 0.00 3.69
4095 4450 2.838452 GCAAAGCTCGTTATAAACACGC 59.162 45.455 0.00 0.00 37.57 5.34
4110 4465 3.238108 TGTCTGTAGCTCTAGCAAAGC 57.762 47.619 4.54 0.00 45.16 3.51
4111 4466 4.862018 GTCTTGTCTGTAGCTCTAGCAAAG 59.138 45.833 4.54 0.00 45.16 2.77
4112 4467 4.524714 AGTCTTGTCTGTAGCTCTAGCAAA 59.475 41.667 4.54 0.00 45.16 3.68
4113 4468 4.082845 AGTCTTGTCTGTAGCTCTAGCAA 58.917 43.478 4.54 0.00 45.16 3.91
4114 4469 3.691575 AGTCTTGTCTGTAGCTCTAGCA 58.308 45.455 4.54 0.00 45.16 3.49
4115 4470 4.712122 AAGTCTTGTCTGTAGCTCTAGC 57.288 45.455 0.00 0.00 42.49 3.42
4116 4471 5.220700 CGGTAAGTCTTGTCTGTAGCTCTAG 60.221 48.000 0.00 0.00 0.00 2.43
4117 4472 4.634883 CGGTAAGTCTTGTCTGTAGCTCTA 59.365 45.833 0.00 0.00 0.00 2.43
4118 4473 3.440872 CGGTAAGTCTTGTCTGTAGCTCT 59.559 47.826 0.00 0.00 0.00 4.09
4119 4474 3.439476 TCGGTAAGTCTTGTCTGTAGCTC 59.561 47.826 0.00 0.00 0.00 4.09
4120 4475 3.190953 GTCGGTAAGTCTTGTCTGTAGCT 59.809 47.826 0.00 0.00 0.00 3.32
4121 4476 3.190953 AGTCGGTAAGTCTTGTCTGTAGC 59.809 47.826 0.00 0.00 0.00 3.58
4122 4477 6.492007 TTAGTCGGTAAGTCTTGTCTGTAG 57.508 41.667 0.00 0.00 0.00 2.74
4123 4478 6.492007 CTTAGTCGGTAAGTCTTGTCTGTA 57.508 41.667 0.00 0.00 34.42 2.74
4124 4479 5.373981 CTTAGTCGGTAAGTCTTGTCTGT 57.626 43.478 0.00 0.00 34.42 3.41
4134 4489 3.734293 GCCTGTAGCACTTAGTCGGTAAG 60.734 52.174 4.47 4.47 43.56 2.34
4135 4490 2.165030 GCCTGTAGCACTTAGTCGGTAA 59.835 50.000 0.00 0.00 42.97 2.85
4136 4491 1.747355 GCCTGTAGCACTTAGTCGGTA 59.253 52.381 0.00 0.00 42.97 4.02
4137 4492 0.531200 GCCTGTAGCACTTAGTCGGT 59.469 55.000 0.00 0.00 42.97 4.69
4138 4493 3.347411 GCCTGTAGCACTTAGTCGG 57.653 57.895 0.00 0.00 42.97 4.79
4140 4495 8.824932 GGTACATCAGCCTGTAGCACTTAGTC 62.825 50.000 13.10 0.00 45.18 2.59
4141 4496 7.131302 GGTACATCAGCCTGTAGCACTTAGT 62.131 48.000 13.10 0.00 45.18 2.24
4142 4497 4.737946 GGTACATCAGCCTGTAGCACTTAG 60.738 50.000 13.10 0.00 45.18 2.18
4143 4498 3.132289 GGTACATCAGCCTGTAGCACTTA 59.868 47.826 13.10 0.00 45.18 2.24
4144 4499 2.093447 GGTACATCAGCCTGTAGCACTT 60.093 50.000 13.10 0.00 45.18 3.16
4145 4500 1.482593 GGTACATCAGCCTGTAGCACT 59.517 52.381 13.10 0.00 45.18 4.40
4146 4501 1.941325 GGTACATCAGCCTGTAGCAC 58.059 55.000 13.10 0.00 45.18 4.40
4160 4515 7.389330 CACTGTTTCCAATTAGTGTATGGTACA 59.611 37.037 0.00 0.00 38.40 2.90
4161 4516 7.148306 CCACTGTTTCCAATTAGTGTATGGTAC 60.148 40.741 0.00 0.00 39.02 3.34
4162 4517 6.882140 CCACTGTTTCCAATTAGTGTATGGTA 59.118 38.462 0.00 0.00 39.02 3.25
4163 4518 5.710099 CCACTGTTTCCAATTAGTGTATGGT 59.290 40.000 0.00 0.00 39.02 3.55
4164 4519 5.943416 TCCACTGTTTCCAATTAGTGTATGG 59.057 40.000 0.00 0.00 39.02 2.74
4165 4520 6.128007 GGTCCACTGTTTCCAATTAGTGTATG 60.128 42.308 0.00 0.00 39.02 2.39
4166 4521 5.944007 GGTCCACTGTTTCCAATTAGTGTAT 59.056 40.000 0.00 0.00 39.02 2.29
4167 4522 5.310451 GGTCCACTGTTTCCAATTAGTGTA 58.690 41.667 0.00 0.00 39.02 2.90
4168 4523 4.142038 GGTCCACTGTTTCCAATTAGTGT 58.858 43.478 0.00 0.00 39.02 3.55
4169 4524 3.506067 GGGTCCACTGTTTCCAATTAGTG 59.494 47.826 0.00 0.00 40.06 2.74
4170 4525 3.139397 TGGGTCCACTGTTTCCAATTAGT 59.861 43.478 0.00 0.00 0.00 2.24
4171 4526 3.761897 TGGGTCCACTGTTTCCAATTAG 58.238 45.455 0.00 0.00 0.00 1.73
4172 4527 3.885976 TGGGTCCACTGTTTCCAATTA 57.114 42.857 0.00 0.00 0.00 1.40
4173 4528 2.765689 TGGGTCCACTGTTTCCAATT 57.234 45.000 0.00 0.00 0.00 2.32
4174 4529 2.999185 ATGGGTCCACTGTTTCCAAT 57.001 45.000 0.00 0.00 0.00 3.16
4175 4530 3.885976 TTATGGGTCCACTGTTTCCAA 57.114 42.857 0.00 0.00 0.00 3.53
4176 4531 4.085733 CAATTATGGGTCCACTGTTTCCA 58.914 43.478 0.00 0.00 0.00 3.53
4177 4532 4.340617 TCAATTATGGGTCCACTGTTTCC 58.659 43.478 0.00 0.00 0.00 3.13
4178 4533 5.975693 TTCAATTATGGGTCCACTGTTTC 57.024 39.130 0.00 0.00 0.00 2.78
4179 4534 6.739331 TTTTCAATTATGGGTCCACTGTTT 57.261 33.333 0.00 0.00 0.00 2.83
4180 4535 6.496565 TGATTTTCAATTATGGGTCCACTGTT 59.503 34.615 0.00 0.00 0.00 3.16
4181 4536 6.015918 TGATTTTCAATTATGGGTCCACTGT 58.984 36.000 0.00 0.00 0.00 3.55
4182 4537 6.406177 CCTGATTTTCAATTATGGGTCCACTG 60.406 42.308 0.00 0.00 0.00 3.66
4183 4538 5.658190 CCTGATTTTCAATTATGGGTCCACT 59.342 40.000 0.00 0.00 0.00 4.00
4184 4539 5.163416 CCCTGATTTTCAATTATGGGTCCAC 60.163 44.000 0.00 0.00 0.00 4.02
4185 4540 4.961730 CCCTGATTTTCAATTATGGGTCCA 59.038 41.667 0.00 0.00 0.00 4.02
4186 4541 5.208121 TCCCTGATTTTCAATTATGGGTCC 58.792 41.667 0.00 0.00 31.07 4.46
4187 4542 5.302823 CCTCCCTGATTTTCAATTATGGGTC 59.697 44.000 0.00 0.00 31.07 4.46
4188 4543 5.043432 TCCTCCCTGATTTTCAATTATGGGT 60.043 40.000 0.00 0.00 31.07 4.51
4189 4544 5.457686 TCCTCCCTGATTTTCAATTATGGG 58.542 41.667 0.00 0.00 30.47 4.00
4190 4545 6.608808 ACTTCCTCCCTGATTTTCAATTATGG 59.391 38.462 0.00 0.00 0.00 2.74
4191 4546 7.340232 TCACTTCCTCCCTGATTTTCAATTATG 59.660 37.037 0.00 0.00 0.00 1.90
4192 4547 7.413446 TCACTTCCTCCCTGATTTTCAATTAT 58.587 34.615 0.00 0.00 0.00 1.28
4193 4548 6.789268 TCACTTCCTCCCTGATTTTCAATTA 58.211 36.000 0.00 0.00 0.00 1.40
4194 4549 5.644188 TCACTTCCTCCCTGATTTTCAATT 58.356 37.500 0.00 0.00 0.00 2.32
4195 4550 5.261040 TCACTTCCTCCCTGATTTTCAAT 57.739 39.130 0.00 0.00 0.00 2.57
4196 4551 4.722526 TCACTTCCTCCCTGATTTTCAA 57.277 40.909 0.00 0.00 0.00 2.69
4197 4552 4.934797 ATCACTTCCTCCCTGATTTTCA 57.065 40.909 0.00 0.00 0.00 2.69
4198 4553 4.400567 CCAATCACTTCCTCCCTGATTTTC 59.599 45.833 0.00 0.00 33.29 2.29
4199 4554 4.347607 CCAATCACTTCCTCCCTGATTTT 58.652 43.478 0.00 0.00 33.29 1.82
4200 4555 3.879321 GCCAATCACTTCCTCCCTGATTT 60.879 47.826 0.00 0.00 33.29 2.17
4201 4556 2.357569 GCCAATCACTTCCTCCCTGATT 60.358 50.000 0.00 0.00 35.45 2.57
4202 4557 1.213926 GCCAATCACTTCCTCCCTGAT 59.786 52.381 0.00 0.00 0.00 2.90
4203 4558 0.620556 GCCAATCACTTCCTCCCTGA 59.379 55.000 0.00 0.00 0.00 3.86
4204 4559 0.745845 CGCCAATCACTTCCTCCCTG 60.746 60.000 0.00 0.00 0.00 4.45
4205 4560 0.909610 TCGCCAATCACTTCCTCCCT 60.910 55.000 0.00 0.00 0.00 4.20
4206 4561 0.462759 CTCGCCAATCACTTCCTCCC 60.463 60.000 0.00 0.00 0.00 4.30
4207 4562 0.462759 CCTCGCCAATCACTTCCTCC 60.463 60.000 0.00 0.00 0.00 4.30
4208 4563 0.250513 ACCTCGCCAATCACTTCCTC 59.749 55.000 0.00 0.00 0.00 3.71
4209 4564 0.036010 CACCTCGCCAATCACTTCCT 60.036 55.000 0.00 0.00 0.00 3.36
4210 4565 0.321653 ACACCTCGCCAATCACTTCC 60.322 55.000 0.00 0.00 0.00 3.46
4211 4566 2.094182 TCTACACCTCGCCAATCACTTC 60.094 50.000 0.00 0.00 0.00 3.01
4212 4567 1.899814 TCTACACCTCGCCAATCACTT 59.100 47.619 0.00 0.00 0.00 3.16
4213 4568 1.557099 TCTACACCTCGCCAATCACT 58.443 50.000 0.00 0.00 0.00 3.41
4214 4569 2.380084 TTCTACACCTCGCCAATCAC 57.620 50.000 0.00 0.00 0.00 3.06
4215 4570 3.627395 AATTCTACACCTCGCCAATCA 57.373 42.857 0.00 0.00 0.00 2.57
4216 4571 4.201920 GGAAAATTCTACACCTCGCCAATC 60.202 45.833 0.00 0.00 0.00 2.67
4217 4572 3.694566 GGAAAATTCTACACCTCGCCAAT 59.305 43.478 0.00 0.00 0.00 3.16
4218 4573 3.078837 GGAAAATTCTACACCTCGCCAA 58.921 45.455 0.00 0.00 0.00 4.52
4219 4574 2.706890 GGAAAATTCTACACCTCGCCA 58.293 47.619 0.00 0.00 0.00 5.69
4220 4575 1.664151 CGGAAAATTCTACACCTCGCC 59.336 52.381 0.00 0.00 0.00 5.54
4221 4576 2.344025 ACGGAAAATTCTACACCTCGC 58.656 47.619 0.00 0.00 0.00 5.03
4222 4577 6.657836 ATAAACGGAAAATTCTACACCTCG 57.342 37.500 0.00 0.00 0.00 4.63
4223 4578 8.938906 TGTTATAAACGGAAAATTCTACACCTC 58.061 33.333 0.00 0.00 0.00 3.85
4224 4579 8.851541 TGTTATAAACGGAAAATTCTACACCT 57.148 30.769 0.00 0.00 0.00 4.00
4225 4580 8.938906 TCTGTTATAAACGGAAAATTCTACACC 58.061 33.333 0.00 0.00 43.50 4.16
4238 4593 4.145365 TGGTCCCATCTGTTATAAACGG 57.855 45.455 0.00 0.00 39.17 4.44
4239 4594 5.183228 ACTTGGTCCCATCTGTTATAAACG 58.817 41.667 0.00 0.00 0.00 3.60
4240 4595 6.433093 ACAACTTGGTCCCATCTGTTATAAAC 59.567 38.462 0.00 0.00 0.00 2.01
4241 4596 6.548321 ACAACTTGGTCCCATCTGTTATAAA 58.452 36.000 0.00 0.00 0.00 1.40
4242 4597 6.134535 ACAACTTGGTCCCATCTGTTATAA 57.865 37.500 0.00 0.00 0.00 0.98
4243 4598 5.249622 TGACAACTTGGTCCCATCTGTTATA 59.750 40.000 0.00 0.00 36.97 0.98
4244 4599 4.042809 TGACAACTTGGTCCCATCTGTTAT 59.957 41.667 0.00 0.00 36.97 1.89
4245 4600 3.392947 TGACAACTTGGTCCCATCTGTTA 59.607 43.478 0.00 0.00 36.97 2.41
4246 4601 2.174639 TGACAACTTGGTCCCATCTGTT 59.825 45.455 0.00 0.00 36.97 3.16
4247 4602 1.774254 TGACAACTTGGTCCCATCTGT 59.226 47.619 0.00 0.00 36.97 3.41
4248 4603 2.566833 TGACAACTTGGTCCCATCTG 57.433 50.000 0.00 0.00 36.97 2.90
4249 4604 3.846588 ACTATGACAACTTGGTCCCATCT 59.153 43.478 0.00 0.00 36.97 2.90
4250 4605 4.222124 ACTATGACAACTTGGTCCCATC 57.778 45.455 0.00 0.00 36.97 3.51
4251 4606 4.042809 TCAACTATGACAACTTGGTCCCAT 59.957 41.667 0.00 0.00 36.97 4.00
4252 4607 3.392947 TCAACTATGACAACTTGGTCCCA 59.607 43.478 0.00 0.00 36.97 4.37
4253 4608 4.015872 TCAACTATGACAACTTGGTCCC 57.984 45.455 0.00 0.00 36.97 4.46
4268 4623 8.617809 AGCAATTTTCTTTTACGAAGTCAACTA 58.382 29.630 0.00 0.00 43.93 2.24
4271 4626 8.399425 TGTAGCAATTTTCTTTTACGAAGTCAA 58.601 29.630 0.00 0.00 43.93 3.18
4278 4633 7.252865 GCGTACATGTAGCAATTTTCTTTTACG 60.253 37.037 5.62 4.09 0.00 3.18
4280 4635 6.739100 CGCGTACATGTAGCAATTTTCTTTTA 59.261 34.615 20.12 0.00 0.00 1.52
4285 4640 4.253352 TCGCGTACATGTAGCAATTTTC 57.747 40.909 20.12 3.01 0.00 2.29
4286 4641 4.331443 TCATCGCGTACATGTAGCAATTTT 59.669 37.500 20.12 4.55 0.00 1.82
4294 4649 5.684550 AGACTATTCATCGCGTACATGTA 57.315 39.130 5.77 0.08 0.00 2.29
4362 4717 8.195617 TCAAAAAGAGATTTGATTGCGTTTTT 57.804 26.923 0.00 0.00 42.68 1.94
4363 4718 7.769272 TCAAAAAGAGATTTGATTGCGTTTT 57.231 28.000 0.00 0.00 42.68 2.43
4372 4727 7.228706 GGGTGTCTAAGTCAAAAAGAGATTTGA 59.771 37.037 0.00 0.00 44.68 2.69
4373 4728 7.363431 GGGTGTCTAAGTCAAAAAGAGATTTG 58.637 38.462 0.00 0.00 40.78 2.32
4740 5095 0.366871 GATGCAGCAGTCGTTGTACG 59.633 55.000 0.00 0.00 44.19 3.67
4745 5100 2.341257 CTACTTGATGCAGCAGTCGTT 58.659 47.619 4.20 0.00 0.00 3.85
4774 5129 2.158755 AGTATGGGGTAGCATTGCTCAC 60.159 50.000 15.81 11.36 40.44 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.