Multiple sequence alignment - TraesCS3A01G340400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G340400 chr3A 100.000 5282 0 0 1 5282 587590364 587585083 0.000000e+00 9755.0
1 TraesCS3A01G340400 chr3B 92.932 3325 141 38 606 3884 584744155 584740879 0.000000e+00 4752.0
2 TraesCS3A01G340400 chr3B 92.458 716 44 7 3929 4642 584740770 584740063 0.000000e+00 1014.0
3 TraesCS3A01G340400 chr3B 92.038 314 17 6 4675 4985 584739982 584739674 8.120000e-118 435.0
4 TraesCS3A01G340400 chr3B 84.673 398 38 11 3059 3442 573312159 573312547 4.990000e-100 375.0
5 TraesCS3A01G340400 chr3B 83.206 262 34 7 350 609 805490428 805490681 1.140000e-56 231.0
6 TraesCS3A01G340400 chr3D 94.132 818 35 7 3036 3842 445840103 445839288 0.000000e+00 1232.0
7 TraesCS3A01G340400 chr3D 91.304 713 48 4 3933 4642 445839285 445838584 0.000000e+00 961.0
8 TraesCS3A01G340400 chr3D 91.261 698 38 12 1323 1999 445841639 445840944 0.000000e+00 929.0
9 TraesCS3A01G340400 chr3D 93.686 586 19 8 636 1212 445842216 445841640 0.000000e+00 861.0
10 TraesCS3A01G340400 chr3D 91.329 519 20 9 2225 2742 445840794 445840300 0.000000e+00 686.0
11 TraesCS3A01G340400 chr3D 90.714 280 22 3 4675 4953 445838500 445838224 2.320000e-98 370.0
12 TraesCS3A01G340400 chr3D 93.243 148 10 0 2042 2189 445840944 445840797 8.910000e-53 219.0
13 TraesCS3A01G340400 chr3D 94.574 129 7 0 2818 2946 445840278 445840150 3.230000e-47 200.0
14 TraesCS3A01G340400 chr3D 85.246 122 16 2 5057 5177 601847919 601848039 2.000000e-24 124.0
15 TraesCS3A01G340400 chr3D 100.000 32 0 0 609 640 445842265 445842234 5.710000e-05 60.2
16 TraesCS3A01G340400 chr4A 94.300 614 19 8 1 613 176876865 176876267 0.000000e+00 926.0
17 TraesCS3A01G340400 chr4A 87.500 120 13 2 5058 5176 722505675 722505557 2.570000e-28 137.0
18 TraesCS3A01G340400 chr6B 93.255 593 35 3 1 591 11253529 11254118 0.000000e+00 869.0
19 TraesCS3A01G340400 chr6B 87.288 118 13 2 5058 5174 92916339 92916455 3.320000e-27 134.0
20 TraesCS3A01G340400 chr6B 86.325 117 14 2 5057 5172 702942850 702942965 5.550000e-25 126.0
21 TraesCS3A01G340400 chr4B 91.198 409 32 2 206 613 362689325 362688920 2.150000e-153 553.0
22 TraesCS3A01G340400 chr4B 89.806 206 21 0 1 206 362725387 362725182 1.130000e-66 265.0
23 TraesCS3A01G340400 chr4B 83.010 206 33 2 408 611 617432837 617432632 9.030000e-43 185.0
24 TraesCS3A01G340400 chr4B 90.678 118 9 2 5058 5174 141456040 141455924 7.080000e-34 156.0
25 TraesCS3A01G340400 chr7D 85.545 422 37 10 3035 3442 96456604 96456193 2.270000e-113 420.0
26 TraesCS3A01G340400 chr7D 83.099 213 25 4 1 212 69825611 69825409 3.250000e-42 183.0
27 TraesCS3A01G340400 chr7A 84.597 422 40 11 3043 3449 99621911 99621500 3.830000e-106 396.0
28 TraesCS3A01G340400 chr7A 83.920 199 26 5 424 619 309582098 309581903 9.030000e-43 185.0
29 TraesCS3A01G340400 chr4D 85.950 363 34 9 1 354 150753123 150753477 6.460000e-99 372.0
30 TraesCS3A01G340400 chr4D 88.636 264 28 2 350 613 150728755 150729016 2.370000e-83 320.0
31 TraesCS3A01G340400 chr4D 87.925 265 29 3 350 613 150753504 150753766 5.140000e-80 309.0
32 TraesCS3A01G340400 chr4D 83.902 205 19 9 1 203 502404437 502404245 3.250000e-42 183.0
33 TraesCS3A01G340400 chr2D 84.000 250 31 7 365 613 191052717 191052476 1.140000e-56 231.0
34 TraesCS3A01G340400 chr2D 83.333 204 23 4 1 203 44066031 44066224 1.510000e-40 178.0
35 TraesCS3A01G340400 chr2D 100.000 28 0 0 634 661 560225034 560225007 1.000000e-02 52.8
36 TraesCS3A01G340400 chr2B 89.076 119 11 2 5058 5175 394149238 394149355 4.260000e-31 147.0
37 TraesCS3A01G340400 chr2B 100.000 31 0 0 4363 4393 495026137 495026107 2.050000e-04 58.4
38 TraesCS3A01G340400 chr1B 88.136 118 12 2 5058 5174 571190812 571190696 7.130000e-29 139.0
39 TraesCS3A01G340400 chr1B 86.260 131 15 3 5046 5174 582927217 582927088 7.130000e-29 139.0
40 TraesCS3A01G340400 chr2A 85.950 121 11 5 5057 5175 51366763 51366879 2.000000e-24 124.0
41 TraesCS3A01G340400 chr2A 74.638 138 31 3 487 621 633247414 633247278 2.050000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G340400 chr3A 587585083 587590364 5281 True 9755.000000 9755 100.000000 1 5282 1 chr3A.!!$R1 5281
1 TraesCS3A01G340400 chr3B 584739674 584744155 4481 True 2067.000000 4752 92.476000 606 4985 3 chr3B.!!$R1 4379
2 TraesCS3A01G340400 chr3D 445838224 445842265 4041 True 613.133333 1232 93.360333 609 4953 9 chr3D.!!$R1 4344
3 TraesCS3A01G340400 chr4A 176876267 176876865 598 True 926.000000 926 94.300000 1 613 1 chr4A.!!$R1 612
4 TraesCS3A01G340400 chr6B 11253529 11254118 589 False 869.000000 869 93.255000 1 591 1 chr6B.!!$F1 590
5 TraesCS3A01G340400 chr4D 150753123 150753766 643 False 340.500000 372 86.937500 1 613 2 chr4D.!!$F2 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 1018 0.317160 TTCTTCTCCTTCGCGCTTCA 59.683 50.0 5.56 0.0 0.00 3.02 F
1711 1796 0.098552 TGCTGTTTCGTGTTGCAGTG 59.901 50.0 0.00 0.0 0.00 3.66 F
1741 1826 0.324285 CTCTGCTCTGGCTCTTTGGT 59.676 55.0 0.00 0.0 39.59 3.67 F
1872 1970 1.013596 CAGTCTTGCACGTGTTCCAA 58.986 50.0 18.38 11.8 0.00 3.53 F
3486 3599 1.468506 TTACTGTCTCTGCCGTGCCA 61.469 55.0 0.00 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 1885 0.379669 CATCGGCTGGCAAGAACATC 59.620 55.000 1.08 0.0 0.0 3.06 R
3486 3599 0.685458 AGTTGATAGGGGCGTACGGT 60.685 55.000 18.39 0.0 0.0 4.83 R
3607 3720 1.001268 GCGATGAAGAGGAGCGTATCA 60.001 52.381 0.00 0.0 0.0 2.15 R
3626 3739 3.581024 TGGCATTTTCATCTGACTTGC 57.419 42.857 0.00 0.0 0.0 4.01 R
5254 5501 0.038343 CCCAGCCAAACATGAAACGG 60.038 55.000 0.00 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
406 447 1.153628 GCTTGCGTGATCGTAGGGT 60.154 57.895 0.00 0.00 39.49 4.34
458 499 1.472480 GCCGAGGAAAATTGCTAAGCA 59.528 47.619 0.00 0.00 36.47 3.91
553 594 4.724399 TGGTCCATGATGTTTTGTGTAGT 58.276 39.130 0.00 0.00 0.00 2.73
565 606 4.978438 TTTGTGTAGTTTAGGCTGGGTA 57.022 40.909 0.00 0.00 0.00 3.69
568 609 3.841845 TGTGTAGTTTAGGCTGGGTACAT 59.158 43.478 0.00 0.00 0.00 2.29
890 953 0.968405 TGCTGCAGGTTTGATTTCCC 59.032 50.000 17.12 0.00 0.00 3.97
891 954 1.260544 GCTGCAGGTTTGATTTCCCT 58.739 50.000 17.12 0.00 0.00 4.20
955 1018 0.317160 TTCTTCTCCTTCGCGCTTCA 59.683 50.000 5.56 0.00 0.00 3.02
977 1040 2.577059 CCCCTTCGTCGCTTGCTA 59.423 61.111 0.00 0.00 0.00 3.49
978 1041 1.519455 CCCCTTCGTCGCTTGCTAG 60.519 63.158 0.00 0.00 0.00 3.42
979 1042 2.167861 CCCTTCGTCGCTTGCTAGC 61.168 63.158 8.10 8.10 44.21 3.42
1184 1256 5.057149 AGCTCGGTTATTTGCGAGATTATT 58.943 37.500 0.00 0.00 0.00 1.40
1185 1257 6.220930 AGCTCGGTTATTTGCGAGATTATTA 58.779 36.000 0.00 0.00 0.00 0.98
1186 1258 6.874134 AGCTCGGTTATTTGCGAGATTATTAT 59.126 34.615 0.00 0.00 0.00 1.28
1227 1299 2.024306 GCTTTCCTGTTATCTGGGGGC 61.024 57.143 0.00 0.00 34.13 5.80
1233 1305 2.041430 TTATCTGGGGGCCGTCCA 59.959 61.111 14.68 14.68 37.22 4.02
1253 1328 3.429547 CCAGATCAAGTACCTCCGTCTTG 60.430 52.174 0.00 0.00 39.59 3.02
1271 1346 1.286248 TGTTAGGGGAAGAAGAGGCC 58.714 55.000 0.00 0.00 0.00 5.19
1289 1364 1.355210 CGTTGGCGTCTTTGTTGCT 59.645 52.632 0.00 0.00 0.00 3.91
1292 1367 2.050077 GGCGTCTTTGTTGCTGGC 60.050 61.111 0.00 0.00 0.00 4.85
1307 1382 3.743714 TGGCACAGTTAATGCAGGT 57.256 47.368 0.00 0.00 45.27 4.00
1310 1385 1.669795 GGCACAGTTAATGCAGGTTGC 60.670 52.381 0.00 0.00 45.27 4.17
1319 1394 4.487412 GCAGGTTGCATCAGCGGC 62.487 66.667 0.00 0.00 44.26 6.53
1333 1409 2.644992 CGGCCCTGCAGTTTTGTC 59.355 61.111 13.81 0.00 0.00 3.18
1362 1438 0.598419 GCTTGCTGGTGAAGTTTGCC 60.598 55.000 0.00 0.00 0.00 4.52
1367 1443 2.251371 GGTGAAGTTTGCCGCGTC 59.749 61.111 4.92 0.00 0.00 5.19
1383 1459 0.512952 CGTCAGTTGTAGCACTTGGC 59.487 55.000 0.00 0.00 45.30 4.52
1451 1530 0.881118 TTTTGGCAATCGAGACTGGC 59.119 50.000 0.00 10.47 38.54 4.85
1513 1593 3.146066 GTTGGGCAGACTGTGTTGAATA 58.854 45.455 3.99 0.00 0.00 1.75
1536 1616 6.003859 ACTTCCTTCTAGAACCGAGAGATA 57.996 41.667 0.00 0.00 0.00 1.98
1547 1627 9.331282 CTAGAACCGAGAGATATTTTGGATTTT 57.669 33.333 0.00 0.00 0.00 1.82
1575 1656 4.545208 AAAGACTGGGAAGTTCTAGCTC 57.455 45.455 2.25 3.48 0.00 4.09
1577 1658 3.785364 AGACTGGGAAGTTCTAGCTCTT 58.215 45.455 2.25 0.00 0.00 2.85
1622 1707 5.351465 TCGCATTGAATTTCTCTAGTTGGTC 59.649 40.000 0.00 0.00 0.00 4.02
1641 1726 3.509575 GGTCCAATGCAAATTACCAGTCA 59.490 43.478 0.00 0.00 0.00 3.41
1675 1760 1.093496 CGGCATCAGATCAGCAGCAA 61.093 55.000 0.00 0.00 0.00 3.91
1691 1776 2.430244 AAGTGCGTGCGTAGACCG 60.430 61.111 0.00 0.00 40.40 4.79
1711 1796 0.098552 TGCTGTTTCGTGTTGCAGTG 59.901 50.000 0.00 0.00 0.00 3.66
1741 1826 0.324285 CTCTGCTCTGGCTCTTTGGT 59.676 55.000 0.00 0.00 39.59 3.67
1775 1862 6.486993 CAGTATGTGATCAGTGCTACTACCTA 59.513 42.308 0.00 0.00 0.00 3.08
1809 1896 3.328505 CCCACAATTTGATGTTCTTGCC 58.671 45.455 2.79 0.00 0.00 4.52
1838 1936 7.606073 CCGATGGATTTCTTAAATTTTGGGTTT 59.394 33.333 0.00 0.00 0.00 3.27
1860 1958 4.635223 TGTTGGAGAGATTGACAGTCTTG 58.365 43.478 1.58 0.00 0.00 3.02
1864 1962 2.665537 GAGAGATTGACAGTCTTGCACG 59.334 50.000 1.58 0.00 0.00 5.34
1872 1970 1.013596 CAGTCTTGCACGTGTTCCAA 58.986 50.000 18.38 11.80 0.00 3.53
1913 2011 5.350504 AATCTGGGTCTCATTCTGTACAG 57.649 43.478 17.17 17.17 0.00 2.74
2013 2111 8.964533 ATATTAGACTCTCTCTCTCTCTCTCT 57.035 38.462 0.00 0.00 0.00 3.10
2015 2113 4.877773 AGACTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
2017 2115 4.877773 ACTCTCTCTCTCTCTCTCTCTCT 58.122 47.826 0.00 0.00 0.00 3.10
2019 2117 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2021 2119 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2024 2122 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2026 2124 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
2028 2126 4.651503 TCTCTCTCTCTCTCTCTCTCTTCC 59.348 50.000 0.00 0.00 0.00 3.46
2029 2127 4.624913 TCTCTCTCTCTCTCTCTCTTCCT 58.375 47.826 0.00 0.00 0.00 3.36
2176 2274 3.739519 CGAAAGCCGAAATCCATCTCTCT 60.740 47.826 0.00 0.00 41.76 3.10
2186 2284 8.030106 CCGAAATCCATCTCTCTTATTAGTACC 58.970 40.741 0.00 0.00 0.00 3.34
2187 2285 8.798402 CGAAATCCATCTCTCTTATTAGTACCT 58.202 37.037 0.00 0.00 0.00 3.08
2210 2308 5.656213 ACTAGGCTACGTATCACAAAGTT 57.344 39.130 0.00 0.00 0.00 2.66
2211 2309 6.034161 ACTAGGCTACGTATCACAAAGTTT 57.966 37.500 0.00 0.00 0.00 2.66
2212 2310 6.461640 ACTAGGCTACGTATCACAAAGTTTT 58.538 36.000 0.00 0.00 0.00 2.43
2213 2311 5.607119 AGGCTACGTATCACAAAGTTTTG 57.393 39.130 0.00 3.17 43.62 2.44
2214 2312 4.454504 AGGCTACGTATCACAAAGTTTTGG 59.545 41.667 9.22 0.00 42.34 3.28
2215 2313 4.156182 GCTACGTATCACAAAGTTTTGGC 58.844 43.478 9.22 0.00 42.34 4.52
2288 2390 7.273815 CCTCTAATTCTGAACTTGTCGTCTTAC 59.726 40.741 0.00 0.00 0.00 2.34
2294 2396 4.365723 TGAACTTGTCGTCTTACAACCTC 58.634 43.478 0.00 0.00 35.56 3.85
2350 2460 7.539712 TGTTCTCAGCTATTTAGTACATTGC 57.460 36.000 0.00 0.00 0.00 3.56
2520 2630 8.617809 CAACTTTATTGTTGTACTTGTACCTGT 58.382 33.333 8.25 0.00 41.50 4.00
2521 2631 8.741603 ACTTTATTGTTGTACTTGTACCTGTT 57.258 30.769 8.25 0.00 0.00 3.16
2522 2632 8.833493 ACTTTATTGTTGTACTTGTACCTGTTC 58.167 33.333 8.25 0.00 0.00 3.18
2523 2633 8.967664 TTTATTGTTGTACTTGTACCTGTTCT 57.032 30.769 8.25 0.00 0.00 3.01
2758 2869 3.639099 CTCCAGCTTTGCTTGGAGA 57.361 52.632 21.93 5.63 46.58 3.71
2778 2889 6.484643 TGGAGAGAGTCAAATTTGTTTCTCAG 59.515 38.462 31.98 8.68 39.19 3.35
3008 3120 4.010349 GTGTTGGTTTCCTCCTAATCAGG 58.990 47.826 0.00 0.00 44.17 3.86
3322 3435 9.975218 AAGGATCACAACCTTTACTTATACAAT 57.025 29.630 0.00 0.00 44.13 2.71
3381 3494 4.445453 TCGCTGCTCTCATGATTTAACAT 58.555 39.130 0.00 0.00 0.00 2.71
3412 3525 9.042008 GCTTTTCCTAAAGTCGTATGATTCATA 57.958 33.333 2.14 2.14 42.25 2.15
3486 3599 1.468506 TTACTGTCTCTGCCGTGCCA 61.469 55.000 0.00 0.00 0.00 4.92
3510 3623 1.887707 CGCCCCTATCAACTTCGGC 60.888 63.158 0.00 0.00 0.00 5.54
3537 3650 4.023963 GCCCTTTCTGTCTTTGTACAAGAC 60.024 45.833 21.48 21.48 45.12 3.01
3626 3739 3.304257 CTTGATACGCTCCTCTTCATCG 58.696 50.000 0.00 0.00 0.00 3.84
3634 3747 2.538437 CTCCTCTTCATCGCAAGTCAG 58.462 52.381 0.00 0.00 39.48 3.51
3687 3811 1.940613 CGCCCAGGCTAATGAGTTAAC 59.059 52.381 7.17 0.00 39.32 2.01
3714 3838 4.060900 AGCATTTGTGACTAGATATGCCG 58.939 43.478 0.00 0.00 35.90 5.69
3880 4004 3.705604 ACCAACTGAAATCGCACTTTTG 58.294 40.909 0.00 0.00 0.00 2.44
4073 4262 2.241722 CTGAAACCGTTTGCTATTGCG 58.758 47.619 0.00 0.00 43.34 4.85
4100 4289 0.033504 AGACGGTTTGCTGATGACGT 59.966 50.000 0.00 0.00 37.26 4.34
4105 4294 3.293872 TTTGCTGATGACGTGCGCG 62.294 57.895 19.78 19.78 44.93 6.86
4207 4396 2.223377 GTGATGAACGTGTTCTGGTTCC 59.777 50.000 13.40 0.00 41.36 3.62
4218 4407 3.517901 TGTTCTGGTTCCGGAAGATATGT 59.482 43.478 19.50 0.00 32.69 2.29
4252 4441 2.003301 GAACCCTGTCGAAGATGAAGC 58.997 52.381 0.00 0.00 40.67 3.86
4357 4546 2.872858 CCTTGTAGATAAAAGCTCGGCC 59.127 50.000 0.00 0.00 0.00 6.13
4359 4548 1.202486 TGTAGATAAAAGCTCGGCCGG 60.202 52.381 27.83 17.41 0.00 6.13
4361 4550 0.252197 AGATAAAAGCTCGGCCGGTT 59.748 50.000 27.83 13.96 0.00 4.44
4370 4559 1.202143 GCTCGGCCGGTTAAATTTGAG 60.202 52.381 27.83 12.21 0.00 3.02
4371 4560 1.400494 CTCGGCCGGTTAAATTTGAGG 59.600 52.381 27.83 0.16 0.00 3.86
4393 4582 7.714377 TGAGGTAAAACCACGACACTTATTTTA 59.286 33.333 0.00 0.00 41.95 1.52
4399 4588 6.737254 ACCACGACACTTATTTTAAGATGG 57.263 37.500 0.00 0.00 0.00 3.51
4489 4679 2.391616 TGATGTGAGAGGTGATGCAC 57.608 50.000 0.00 0.00 0.00 4.57
4518 4710 9.227777 AGTATTATTCTTTTTACTTTCGTGGCT 57.772 29.630 0.00 0.00 0.00 4.75
4544 4736 4.020378 CCACGCGAAACCAACCCG 62.020 66.667 15.93 0.00 0.00 5.28
4547 4739 4.067016 CGCGAAACCAACCCGTCG 62.067 66.667 0.00 0.00 36.59 5.12
4570 4762 2.095567 CGTTGCTGAATCTGTGAAAGGG 60.096 50.000 0.00 0.00 0.00 3.95
4666 4896 2.137395 CGATTTTGTTCGTGCCGCG 61.137 57.895 0.00 0.00 43.01 6.46
4668 4898 3.187699 ATTTTGTTCGTGCCGCGCA 62.188 52.632 8.75 0.00 41.07 6.09
4669 4899 2.669808 ATTTTGTTCGTGCCGCGCAA 62.670 50.000 8.75 0.00 41.47 4.85
4776 5022 1.232621 CCGTTCTTGGTCGTTTCCCC 61.233 60.000 0.00 0.00 0.00 4.81
4821 5067 3.680786 GCCCAAGGCCAACGGTTC 61.681 66.667 5.01 0.00 44.06 3.62
4946 5193 1.446272 GTGCTCGGGGTCGAAGAAG 60.446 63.158 0.00 0.00 45.47 2.85
4957 5204 0.524862 TCGAAGAAGACGTACCTGCC 59.475 55.000 0.00 0.00 0.00 4.85
4958 5205 0.526662 CGAAGAAGACGTACCTGCCT 59.473 55.000 0.00 0.00 0.00 4.75
4959 5206 1.732732 CGAAGAAGACGTACCTGCCTG 60.733 57.143 0.00 0.00 0.00 4.85
4960 5207 0.608640 AAGAAGACGTACCTGCCTGG 59.391 55.000 0.00 0.00 42.93 4.45
4994 5241 8.546597 AACAAAAATCTGTTTTAAGTTGCACT 57.453 26.923 0.00 0.00 36.05 4.40
4995 5242 8.546597 ACAAAAATCTGTTTTAAGTTGCACTT 57.453 26.923 6.74 6.74 41.97 3.16
4996 5243 8.998377 ACAAAAATCTGTTTTAAGTTGCACTTT 58.002 25.926 6.82 0.00 39.51 2.66
4997 5244 9.824534 CAAAAATCTGTTTTAAGTTGCACTTTT 57.175 25.926 6.82 0.00 39.51 2.27
5001 5248 8.642908 ATCTGTTTTAAGTTGCACTTTTTACC 57.357 30.769 6.82 0.00 39.51 2.85
5002 5249 7.603651 TCTGTTTTAAGTTGCACTTTTTACCA 58.396 30.769 6.82 0.23 39.51 3.25
5003 5250 8.088981 TCTGTTTTAAGTTGCACTTTTTACCAA 58.911 29.630 6.82 0.00 39.51 3.67
5004 5251 8.603242 TGTTTTAAGTTGCACTTTTTACCAAA 57.397 26.923 6.82 0.00 39.51 3.28
5005 5252 9.052759 TGTTTTAAGTTGCACTTTTTACCAAAA 57.947 25.926 6.82 4.75 39.51 2.44
5011 5258 9.443323 AAGTTGCACTTTTTACCAAAATAAAGT 57.557 25.926 0.00 0.00 40.42 2.66
5012 5259 9.443323 AGTTGCACTTTTTACCAAAATAAAGTT 57.557 25.926 0.00 0.00 38.41 2.66
5013 5260 9.484326 GTTGCACTTTTTACCAAAATAAAGTTG 57.516 29.630 0.00 0.00 38.41 3.16
5014 5261 7.689299 TGCACTTTTTACCAAAATAAAGTTGC 58.311 30.769 0.00 0.00 38.41 4.17
5015 5262 7.334421 TGCACTTTTTACCAAAATAAAGTTGCA 59.666 29.630 0.33 0.33 38.41 4.08
5016 5263 7.638295 GCACTTTTTACCAAAATAAAGTTGCAC 59.362 33.333 0.00 0.00 38.41 4.57
5017 5264 8.119845 CACTTTTTACCAAAATAAAGTTGCACC 58.880 33.333 0.00 0.00 38.41 5.01
5018 5265 8.044309 ACTTTTTACCAAAATAAAGTTGCACCT 58.956 29.630 0.00 0.00 37.50 4.00
5019 5266 8.794335 TTTTTACCAAAATAAAGTTGCACCTT 57.206 26.923 0.00 0.00 0.00 3.50
5020 5267 8.794335 TTTTACCAAAATAAAGTTGCACCTTT 57.206 26.923 14.08 14.08 38.23 3.11
5021 5268 8.794335 TTTACCAAAATAAAGTTGCACCTTTT 57.206 26.923 14.84 4.68 36.18 2.27
5022 5269 9.886132 TTTACCAAAATAAAGTTGCACCTTTTA 57.114 25.926 14.84 6.73 36.18 1.52
5023 5270 9.535878 TTACCAAAATAAAGTTGCACCTTTTAG 57.464 29.630 14.84 1.44 36.18 1.85
5024 5271 7.561251 ACCAAAATAAAGTTGCACCTTTTAGT 58.439 30.769 14.84 3.11 36.18 2.24
5025 5272 7.709182 ACCAAAATAAAGTTGCACCTTTTAGTC 59.291 33.333 14.84 0.00 36.18 2.59
5026 5273 7.096230 CCAAAATAAAGTTGCACCTTTTAGTCG 60.096 37.037 14.84 2.00 36.18 4.18
5027 5274 6.870971 AATAAAGTTGCACCTTTTAGTCGA 57.129 33.333 14.84 0.00 36.18 4.20
5028 5275 4.813296 AAAGTTGCACCTTTTAGTCGAG 57.187 40.909 3.00 0.00 30.58 4.04
5029 5276 3.470645 AGTTGCACCTTTTAGTCGAGT 57.529 42.857 0.00 0.00 0.00 4.18
5030 5277 4.595762 AGTTGCACCTTTTAGTCGAGTA 57.404 40.909 0.00 0.00 0.00 2.59
5031 5278 5.148651 AGTTGCACCTTTTAGTCGAGTAT 57.851 39.130 0.00 0.00 0.00 2.12
5032 5279 4.929808 AGTTGCACCTTTTAGTCGAGTATG 59.070 41.667 0.00 0.00 0.00 2.39
5033 5280 4.530710 TGCACCTTTTAGTCGAGTATGT 57.469 40.909 0.00 0.00 0.00 2.29
5034 5281 4.491676 TGCACCTTTTAGTCGAGTATGTC 58.508 43.478 0.00 0.00 0.00 3.06
5035 5282 4.219944 TGCACCTTTTAGTCGAGTATGTCT 59.780 41.667 0.00 0.00 0.00 3.41
5036 5283 4.799428 GCACCTTTTAGTCGAGTATGTCTC 59.201 45.833 0.00 0.00 39.62 3.36
5037 5284 5.393243 GCACCTTTTAGTCGAGTATGTCTCT 60.393 44.000 0.00 0.00 40.75 3.10
5038 5285 6.030849 CACCTTTTAGTCGAGTATGTCTCTG 58.969 44.000 0.00 0.00 40.75 3.35
5039 5286 5.038033 CCTTTTAGTCGAGTATGTCTCTGC 58.962 45.833 0.00 0.00 40.75 4.26
5040 5287 5.163602 CCTTTTAGTCGAGTATGTCTCTGCT 60.164 44.000 0.00 0.00 40.75 4.24
5041 5288 6.038382 CCTTTTAGTCGAGTATGTCTCTGCTA 59.962 42.308 0.00 0.00 40.75 3.49
5042 5289 7.255312 CCTTTTAGTCGAGTATGTCTCTGCTAT 60.255 40.741 0.00 0.00 40.75 2.97
5043 5290 8.672823 TTTTAGTCGAGTATGTCTCTGCTATA 57.327 34.615 0.00 0.00 40.75 1.31
5044 5291 8.850007 TTTAGTCGAGTATGTCTCTGCTATAT 57.150 34.615 0.00 0.00 40.75 0.86
5045 5292 8.850007 TTAGTCGAGTATGTCTCTGCTATATT 57.150 34.615 0.00 0.00 40.75 1.28
5046 5293 7.753309 AGTCGAGTATGTCTCTGCTATATTT 57.247 36.000 0.00 0.00 40.75 1.40
5047 5294 8.172352 AGTCGAGTATGTCTCTGCTATATTTT 57.828 34.615 0.00 0.00 40.75 1.82
5048 5295 8.634444 AGTCGAGTATGTCTCTGCTATATTTTT 58.366 33.333 0.00 0.00 40.75 1.94
5049 5296 8.907685 GTCGAGTATGTCTCTGCTATATTTTTC 58.092 37.037 0.00 0.00 40.75 2.29
5050 5297 8.851145 TCGAGTATGTCTCTGCTATATTTTTCT 58.149 33.333 0.00 0.00 40.75 2.52
5068 5315 8.953223 ATTTTTCTATACTATACTCCCTCCGT 57.047 34.615 0.00 0.00 0.00 4.69
5069 5316 7.992754 TTTTCTATACTATACTCCCTCCGTC 57.007 40.000 0.00 0.00 0.00 4.79
5070 5317 5.690464 TCTATACTATACTCCCTCCGTCC 57.310 47.826 0.00 0.00 0.00 4.79
5071 5318 2.847327 TACTATACTCCCTCCGTCCG 57.153 55.000 0.00 0.00 0.00 4.79
5072 5319 1.135094 ACTATACTCCCTCCGTCCGA 58.865 55.000 0.00 0.00 0.00 4.55
5073 5320 1.492176 ACTATACTCCCTCCGTCCGAA 59.508 52.381 0.00 0.00 0.00 4.30
5074 5321 2.092212 ACTATACTCCCTCCGTCCGAAA 60.092 50.000 0.00 0.00 0.00 3.46
5075 5322 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
5076 5323 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
5077 5324 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5078 5325 2.395619 ACTCCCTCCGTCCGAAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
5079 5326 2.770232 ACTCCCTCCGTCCGAAAATATT 59.230 45.455 0.00 0.00 0.00 1.28
5080 5327 3.199289 ACTCCCTCCGTCCGAAAATATTT 59.801 43.478 0.00 0.00 0.00 1.40
5081 5328 3.537580 TCCCTCCGTCCGAAAATATTTG 58.462 45.455 0.39 0.00 0.00 2.32
5082 5329 3.054948 TCCCTCCGTCCGAAAATATTTGT 60.055 43.478 0.39 0.00 0.00 2.83
5083 5330 3.311596 CCCTCCGTCCGAAAATATTTGTC 59.688 47.826 0.39 1.54 0.00 3.18
5084 5331 3.000925 CCTCCGTCCGAAAATATTTGTCG 59.999 47.826 18.06 18.06 34.58 4.35
5092 5339 4.282068 CGAAAATATTTGTCGGAGCATGG 58.718 43.478 17.59 0.00 0.00 3.66
5093 5340 4.035091 CGAAAATATTTGTCGGAGCATGGA 59.965 41.667 17.59 0.00 0.00 3.41
5094 5341 5.277974 CGAAAATATTTGTCGGAGCATGGAT 60.278 40.000 17.59 0.00 0.00 3.41
5095 5342 5.443185 AAATATTTGTCGGAGCATGGATG 57.557 39.130 0.00 0.00 0.00 3.51
5096 5343 2.425143 ATTTGTCGGAGCATGGATGT 57.575 45.000 0.00 0.00 0.00 3.06
5097 5344 3.558931 ATTTGTCGGAGCATGGATGTA 57.441 42.857 0.00 0.00 0.00 2.29
5098 5345 3.558931 TTTGTCGGAGCATGGATGTAT 57.441 42.857 0.00 0.00 0.00 2.29
5099 5346 2.820059 TGTCGGAGCATGGATGTATC 57.180 50.000 0.00 0.00 0.00 2.24
5100 5347 2.319844 TGTCGGAGCATGGATGTATCT 58.680 47.619 0.00 0.00 0.00 1.98
5101 5348 2.700371 TGTCGGAGCATGGATGTATCTT 59.300 45.455 0.00 0.00 0.00 2.40
5102 5349 3.062763 GTCGGAGCATGGATGTATCTTG 58.937 50.000 0.00 0.00 0.00 3.02
5103 5350 2.965147 TCGGAGCATGGATGTATCTTGA 59.035 45.455 0.00 0.00 0.00 3.02
5104 5351 3.062763 CGGAGCATGGATGTATCTTGAC 58.937 50.000 0.00 0.00 0.00 3.18
5105 5352 3.062763 GGAGCATGGATGTATCTTGACG 58.937 50.000 0.00 0.00 0.00 4.35
5106 5353 3.493350 GGAGCATGGATGTATCTTGACGT 60.493 47.826 0.00 0.00 0.00 4.34
5107 5354 4.262036 GGAGCATGGATGTATCTTGACGTA 60.262 45.833 0.00 0.00 0.00 3.57
5108 5355 5.473931 GAGCATGGATGTATCTTGACGTAT 58.526 41.667 0.00 0.00 0.00 3.06
5109 5356 5.858381 AGCATGGATGTATCTTGACGTATT 58.142 37.500 0.00 0.00 0.00 1.89
5110 5357 6.291377 AGCATGGATGTATCTTGACGTATTT 58.709 36.000 0.00 0.00 0.00 1.40
5111 5358 6.767902 AGCATGGATGTATCTTGACGTATTTT 59.232 34.615 0.00 0.00 0.00 1.82
5112 5359 7.931407 AGCATGGATGTATCTTGACGTATTTTA 59.069 33.333 0.00 0.00 0.00 1.52
5113 5360 8.556194 GCATGGATGTATCTTGACGTATTTTAA 58.444 33.333 0.00 0.00 0.00 1.52
5147 5394 8.798859 ATATCCATTTTTATCTCATTCCTCCG 57.201 34.615 0.00 0.00 0.00 4.63
5148 5395 6.247229 TCCATTTTTATCTCATTCCTCCGA 57.753 37.500 0.00 0.00 0.00 4.55
5149 5396 6.841601 TCCATTTTTATCTCATTCCTCCGAT 58.158 36.000 0.00 0.00 0.00 4.18
5150 5397 7.973402 TCCATTTTTATCTCATTCCTCCGATA 58.027 34.615 0.00 0.00 0.00 2.92
5151 5398 8.436778 TCCATTTTTATCTCATTCCTCCGATAA 58.563 33.333 0.00 0.00 0.00 1.75
5152 5399 8.725148 CCATTTTTATCTCATTCCTCCGATAAG 58.275 37.037 0.00 0.00 32.04 1.73
5153 5400 9.277783 CATTTTTATCTCATTCCTCCGATAAGT 57.722 33.333 0.00 0.00 32.04 2.24
5159 5406 7.841282 TCTCATTCCTCCGATAAGTATTTCT 57.159 36.000 0.00 0.00 0.00 2.52
5160 5407 7.661968 TCTCATTCCTCCGATAAGTATTTCTG 58.338 38.462 0.00 0.00 0.00 3.02
5161 5408 7.505923 TCTCATTCCTCCGATAAGTATTTCTGA 59.494 37.037 0.00 0.00 0.00 3.27
5162 5409 8.018537 TCATTCCTCCGATAAGTATTTCTGAA 57.981 34.615 0.00 0.00 0.00 3.02
5163 5410 7.926555 TCATTCCTCCGATAAGTATTTCTGAAC 59.073 37.037 0.00 0.00 0.00 3.18
5164 5411 5.828747 TCCTCCGATAAGTATTTCTGAACG 58.171 41.667 0.00 0.00 0.00 3.95
5165 5412 4.982916 CCTCCGATAAGTATTTCTGAACGG 59.017 45.833 0.00 0.00 37.18 4.44
5166 5413 5.221185 CCTCCGATAAGTATTTCTGAACGGA 60.221 44.000 12.09 12.09 39.85 4.69
5167 5414 5.828747 TCCGATAAGTATTTCTGAACGGAG 58.171 41.667 9.53 0.00 38.56 4.63
5168 5415 4.982916 CCGATAAGTATTTCTGAACGGAGG 59.017 45.833 0.00 0.00 37.62 4.30
5169 5416 4.982916 CGATAAGTATTTCTGAACGGAGGG 59.017 45.833 0.00 0.00 0.00 4.30
5170 5417 5.221185 CGATAAGTATTTCTGAACGGAGGGA 60.221 44.000 0.00 0.00 0.00 4.20
5171 5418 4.473477 AAGTATTTCTGAACGGAGGGAG 57.527 45.455 0.00 0.00 0.00 4.30
5172 5419 3.442076 AGTATTTCTGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
5173 5420 4.607239 AGTATTTCTGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
5174 5421 5.209659 AGTATTTCTGAACGGAGGGAGTAT 58.790 41.667 0.00 0.00 0.00 2.12
5175 5422 5.661759 AGTATTTCTGAACGGAGGGAGTATT 59.338 40.000 0.00 0.00 0.00 1.89
5176 5423 4.903045 TTTCTGAACGGAGGGAGTATTT 57.097 40.909 0.00 0.00 0.00 1.40
5177 5424 6.555463 ATTTCTGAACGGAGGGAGTATTTA 57.445 37.500 0.00 0.00 0.00 1.40
5178 5425 5.593679 TTCTGAACGGAGGGAGTATTTAG 57.406 43.478 0.00 0.00 0.00 1.85
5179 5426 4.863548 TCTGAACGGAGGGAGTATTTAGA 58.136 43.478 0.00 0.00 0.00 2.10
5180 5427 5.266788 TCTGAACGGAGGGAGTATTTAGAA 58.733 41.667 0.00 0.00 0.00 2.10
5181 5428 5.718130 TCTGAACGGAGGGAGTATTTAGAAA 59.282 40.000 0.00 0.00 0.00 2.52
5182 5429 6.211986 TCTGAACGGAGGGAGTATTTAGAAAA 59.788 38.462 0.00 0.00 0.00 2.29
5183 5430 6.954232 TGAACGGAGGGAGTATTTAGAAAAT 58.046 36.000 0.00 0.00 0.00 1.82
5184 5431 8.081517 TGAACGGAGGGAGTATTTAGAAAATA 57.918 34.615 0.00 0.00 0.00 1.40
5185 5432 8.542080 TGAACGGAGGGAGTATTTAGAAAATAA 58.458 33.333 0.00 0.00 0.00 1.40
5186 5433 8.959705 AACGGAGGGAGTATTTAGAAAATAAG 57.040 34.615 0.00 0.00 0.00 1.73
5187 5434 6.990939 ACGGAGGGAGTATTTAGAAAATAAGC 59.009 38.462 0.00 0.00 0.00 3.09
5188 5435 6.427242 CGGAGGGAGTATTTAGAAAATAAGCC 59.573 42.308 0.00 0.27 0.00 4.35
5189 5436 7.287810 GGAGGGAGTATTTAGAAAATAAGCCA 58.712 38.462 11.06 0.00 0.00 4.75
5190 5437 7.445707 GGAGGGAGTATTTAGAAAATAAGCCAG 59.554 40.741 11.06 0.00 0.00 4.85
5191 5438 7.290813 AGGGAGTATTTAGAAAATAAGCCAGG 58.709 38.462 11.06 0.00 0.00 4.45
5192 5439 6.016192 GGGAGTATTTAGAAAATAAGCCAGGC 60.016 42.308 1.84 1.84 0.00 4.85
5193 5440 6.293462 GGAGTATTTAGAAAATAAGCCAGGCG 60.293 42.308 5.55 0.00 0.00 5.52
5194 5441 6.354130 AGTATTTAGAAAATAAGCCAGGCGA 58.646 36.000 5.55 0.00 0.00 5.54
5195 5442 6.826741 AGTATTTAGAAAATAAGCCAGGCGAA 59.173 34.615 5.55 0.00 0.00 4.70
5196 5443 5.968528 TTTAGAAAATAAGCCAGGCGAAA 57.031 34.783 5.55 0.00 0.00 3.46
5197 5444 3.850122 AGAAAATAAGCCAGGCGAAAC 57.150 42.857 5.55 0.00 0.00 2.78
5198 5445 3.421844 AGAAAATAAGCCAGGCGAAACT 58.578 40.909 5.55 0.00 0.00 2.66
5199 5446 3.826729 AGAAAATAAGCCAGGCGAAACTT 59.173 39.130 5.55 0.00 0.00 2.66
5200 5447 4.280929 AGAAAATAAGCCAGGCGAAACTTT 59.719 37.500 5.55 3.58 0.00 2.66
5201 5448 4.600692 AAATAAGCCAGGCGAAACTTTT 57.399 36.364 5.55 0.00 0.00 2.27
5202 5449 4.600692 AATAAGCCAGGCGAAACTTTTT 57.399 36.364 5.55 0.00 0.00 1.94
5203 5450 2.223537 AAGCCAGGCGAAACTTTTTG 57.776 45.000 5.55 0.00 0.00 2.44
5204 5451 1.111277 AGCCAGGCGAAACTTTTTGT 58.889 45.000 5.55 0.00 0.00 2.83
5205 5452 1.067060 AGCCAGGCGAAACTTTTTGTC 59.933 47.619 5.55 0.00 0.00 3.18
5206 5453 1.202359 GCCAGGCGAAACTTTTTGTCA 60.202 47.619 0.00 0.00 0.00 3.58
5207 5454 2.737039 GCCAGGCGAAACTTTTTGTCAA 60.737 45.455 0.00 0.00 0.00 3.18
5208 5455 3.716601 CCAGGCGAAACTTTTTGTCAAT 58.283 40.909 0.00 0.00 0.00 2.57
5209 5456 3.735746 CCAGGCGAAACTTTTTGTCAATC 59.264 43.478 0.00 0.00 0.00 2.67
5210 5457 4.499696 CCAGGCGAAACTTTTTGTCAATCT 60.500 41.667 0.00 0.00 0.00 2.40
5211 5458 5.043248 CAGGCGAAACTTTTTGTCAATCTT 58.957 37.500 0.00 0.00 0.00 2.40
5212 5459 5.519927 CAGGCGAAACTTTTTGTCAATCTTT 59.480 36.000 0.00 0.00 0.00 2.52
5213 5460 6.035975 CAGGCGAAACTTTTTGTCAATCTTTT 59.964 34.615 0.00 0.00 0.00 2.27
5214 5461 6.593770 AGGCGAAACTTTTTGTCAATCTTTTT 59.406 30.769 0.00 0.00 0.00 1.94
5232 5479 3.407443 TTTTTCTCCCACCACGTCC 57.593 52.632 0.00 0.00 0.00 4.79
5233 5480 0.179012 TTTTTCTCCCACCACGTCCC 60.179 55.000 0.00 0.00 0.00 4.46
5234 5481 1.057851 TTTTCTCCCACCACGTCCCT 61.058 55.000 0.00 0.00 0.00 4.20
5235 5482 1.057851 TTTCTCCCACCACGTCCCTT 61.058 55.000 0.00 0.00 0.00 3.95
5236 5483 1.477685 TTCTCCCACCACGTCCCTTC 61.478 60.000 0.00 0.00 0.00 3.46
5237 5484 2.122769 TCCCACCACGTCCCTTCA 60.123 61.111 0.00 0.00 0.00 3.02
5238 5485 2.172483 CTCCCACCACGTCCCTTCAG 62.172 65.000 0.00 0.00 0.00 3.02
5239 5486 2.516888 CCCACCACGTCCCTTCAGT 61.517 63.158 0.00 0.00 0.00 3.41
5240 5487 1.450211 CCACCACGTCCCTTCAGTT 59.550 57.895 0.00 0.00 0.00 3.16
5241 5488 0.884704 CCACCACGTCCCTTCAGTTG 60.885 60.000 0.00 0.00 0.00 3.16
5242 5489 0.884704 CACCACGTCCCTTCAGTTGG 60.885 60.000 0.00 0.00 0.00 3.77
5243 5490 1.342672 ACCACGTCCCTTCAGTTGGT 61.343 55.000 0.00 0.00 0.00 3.67
5244 5491 0.179029 CCACGTCCCTTCAGTTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
5245 5492 1.675552 CACGTCCCTTCAGTTGGTTT 58.324 50.000 0.00 0.00 0.00 3.27
5246 5493 2.021457 CACGTCCCTTCAGTTGGTTTT 58.979 47.619 0.00 0.00 0.00 2.43
5247 5494 2.032924 CACGTCCCTTCAGTTGGTTTTC 59.967 50.000 0.00 0.00 0.00 2.29
5248 5495 2.092592 ACGTCCCTTCAGTTGGTTTTCT 60.093 45.455 0.00 0.00 0.00 2.52
5249 5496 2.949644 CGTCCCTTCAGTTGGTTTTCTT 59.050 45.455 0.00 0.00 0.00 2.52
5250 5497 3.380320 CGTCCCTTCAGTTGGTTTTCTTT 59.620 43.478 0.00 0.00 0.00 2.52
5251 5498 4.497507 CGTCCCTTCAGTTGGTTTTCTTTC 60.498 45.833 0.00 0.00 0.00 2.62
5252 5499 4.401202 GTCCCTTCAGTTGGTTTTCTTTCA 59.599 41.667 0.00 0.00 0.00 2.69
5253 5500 5.020132 TCCCTTCAGTTGGTTTTCTTTCAA 58.980 37.500 0.00 0.00 0.00 2.69
5254 5501 5.105513 TCCCTTCAGTTGGTTTTCTTTCAAC 60.106 40.000 0.00 0.00 40.52 3.18
5255 5502 5.109210 CCTTCAGTTGGTTTTCTTTCAACC 58.891 41.667 0.00 0.00 43.68 3.77
5256 5503 4.364415 TCAGTTGGTTTTCTTTCAACCG 57.636 40.909 0.00 0.00 46.01 4.44
5257 5504 3.759618 TCAGTTGGTTTTCTTTCAACCGT 59.240 39.130 0.00 0.00 46.01 4.83
5258 5505 4.218852 TCAGTTGGTTTTCTTTCAACCGTT 59.781 37.500 0.00 0.00 46.01 4.44
5259 5506 4.926832 CAGTTGGTTTTCTTTCAACCGTTT 59.073 37.500 0.00 0.00 46.01 3.60
5260 5507 5.061684 CAGTTGGTTTTCTTTCAACCGTTTC 59.938 40.000 0.00 0.00 46.01 2.78
5261 5508 4.785511 TGGTTTTCTTTCAACCGTTTCA 57.214 36.364 0.00 0.00 46.01 2.69
5262 5509 5.331876 TGGTTTTCTTTCAACCGTTTCAT 57.668 34.783 0.00 0.00 46.01 2.57
5263 5510 5.105752 TGGTTTTCTTTCAACCGTTTCATG 58.894 37.500 0.00 0.00 46.01 3.07
5264 5511 5.106442 GGTTTTCTTTCAACCGTTTCATGT 58.894 37.500 0.00 0.00 34.59 3.21
5265 5512 5.579119 GGTTTTCTTTCAACCGTTTCATGTT 59.421 36.000 0.00 0.00 34.59 2.71
5266 5513 6.091577 GGTTTTCTTTCAACCGTTTCATGTTT 59.908 34.615 0.00 0.00 34.59 2.83
5267 5514 6.639671 TTTCTTTCAACCGTTTCATGTTTG 57.360 33.333 0.00 0.00 0.00 2.93
5268 5515 4.677584 TCTTTCAACCGTTTCATGTTTGG 58.322 39.130 0.00 0.00 0.00 3.28
5269 5516 2.500509 TCAACCGTTTCATGTTTGGC 57.499 45.000 0.00 0.00 0.00 4.52
5270 5517 2.028130 TCAACCGTTTCATGTTTGGCT 58.972 42.857 0.00 0.00 0.00 4.75
5271 5518 2.126467 CAACCGTTTCATGTTTGGCTG 58.874 47.619 0.00 0.00 0.00 4.85
5272 5519 0.673437 ACCGTTTCATGTTTGGCTGG 59.327 50.000 0.00 0.00 0.00 4.85
5273 5520 0.038343 CCGTTTCATGTTTGGCTGGG 60.038 55.000 0.00 0.00 0.00 4.45
5274 5521 0.958091 CGTTTCATGTTTGGCTGGGA 59.042 50.000 0.00 0.00 0.00 4.37
5275 5522 1.335872 CGTTTCATGTTTGGCTGGGAC 60.336 52.381 0.00 0.00 0.00 4.46
5276 5523 1.963515 GTTTCATGTTTGGCTGGGACT 59.036 47.619 0.00 0.00 0.00 3.85
5277 5524 2.365293 GTTTCATGTTTGGCTGGGACTT 59.635 45.455 0.00 0.00 0.00 3.01
5278 5525 1.909700 TCATGTTTGGCTGGGACTTC 58.090 50.000 0.00 0.00 0.00 3.01
5279 5526 0.890683 CATGTTTGGCTGGGACTTCC 59.109 55.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
406 447 2.429930 CCGTCCCACCTCTGCAAA 59.570 61.111 0.00 0.00 0.00 3.68
458 499 2.174854 ACTAACCCTCAGGCAAAACTGT 59.825 45.455 0.00 0.00 39.48 3.55
507 548 7.442364 CCAATTACAACCTCACGATCAGATTAT 59.558 37.037 0.00 0.00 0.00 1.28
553 594 4.577988 TGCTAAATGTACCCAGCCTAAA 57.422 40.909 0.00 0.00 32.97 1.85
820 883 0.831711 TTCAGGGCAAAAAGGAGGGC 60.832 55.000 0.00 0.00 0.00 5.19
973 1036 0.964700 CTCCGATGGATCAGCTAGCA 59.035 55.000 18.83 0.00 0.00 3.49
975 1038 0.894141 CCCTCCGATGGATCAGCTAG 59.106 60.000 0.00 0.00 0.00 3.42
976 1039 0.542938 CCCCTCCGATGGATCAGCTA 60.543 60.000 0.00 0.00 0.00 3.32
977 1040 1.840650 CCCCTCCGATGGATCAGCT 60.841 63.158 0.00 0.00 0.00 4.24
978 1041 1.838846 TCCCCTCCGATGGATCAGC 60.839 63.158 0.00 0.00 0.00 4.26
979 1042 0.470833 AGTCCCCTCCGATGGATCAG 60.471 60.000 0.00 0.00 32.20 2.90
1184 1256 5.105228 GCAACCGGCATATAGGTAGGTAATA 60.105 44.000 0.00 0.00 43.97 0.98
1185 1257 4.323257 GCAACCGGCATATAGGTAGGTAAT 60.323 45.833 0.00 0.00 43.97 1.89
1186 1258 3.007182 GCAACCGGCATATAGGTAGGTAA 59.993 47.826 0.00 0.00 43.97 2.85
1227 1299 1.409427 GGAGGTACTTGATCTGGACGG 59.591 57.143 0.00 0.00 41.55 4.79
1233 1305 3.432378 ACAAGACGGAGGTACTTGATCT 58.568 45.455 12.04 0.00 41.55 2.75
1234 1306 3.870633 ACAAGACGGAGGTACTTGATC 57.129 47.619 12.04 0.00 41.55 2.92
1253 1328 0.178301 CGGCCTCTTCTTCCCCTAAC 59.822 60.000 0.00 0.00 0.00 2.34
1289 1364 1.612950 CAACCTGCATTAACTGTGCCA 59.387 47.619 0.00 0.00 41.83 4.92
1310 1385 4.790962 ACTGCAGGGCCGCTGATG 62.791 66.667 25.07 15.13 35.10 3.07
1311 1386 3.574074 AAACTGCAGGGCCGCTGAT 62.574 57.895 25.07 15.51 35.10 2.90
1317 1392 1.109323 ACAGACAAAACTGCAGGGCC 61.109 55.000 19.93 0.00 41.06 5.80
1318 1393 1.537202 CTACAGACAAAACTGCAGGGC 59.463 52.381 19.93 1.36 41.06 5.19
1319 1394 1.537202 GCTACAGACAAAACTGCAGGG 59.463 52.381 19.93 7.03 41.06 4.45
1333 1409 1.938577 CACCAGCAAGCATAGCTACAG 59.061 52.381 0.00 0.00 41.14 2.74
1362 1438 0.161658 CAAGTGCTACAACTGACGCG 59.838 55.000 3.53 3.53 0.00 6.01
1367 1443 1.308047 TGTGCCAAGTGCTACAACTG 58.692 50.000 0.00 0.00 42.00 3.16
1383 1459 4.754618 TGCACCATTGACTAGTAAGTTGTG 59.245 41.667 0.00 0.00 35.56 3.33
1391 1470 5.046304 ACAAGTATCTGCACCATTGACTAGT 60.046 40.000 0.00 0.00 0.00 2.57
1451 1530 6.313744 TGGTACGTATCAGTATCATCACTG 57.686 41.667 3.91 0.00 46.04 3.66
1493 1573 2.363306 ATTCAACACAGTCTGCCCAA 57.637 45.000 0.00 0.00 0.00 4.12
1513 1593 4.304048 TCTCTCGGTTCTAGAAGGAAGT 57.696 45.455 5.12 0.00 0.00 3.01
1622 1707 4.497300 CCTTGACTGGTAATTTGCATTGG 58.503 43.478 0.00 0.00 0.00 3.16
1641 1726 2.677228 CCGATGCACCTTCCCCTT 59.323 61.111 0.00 0.00 0.00 3.95
1691 1776 0.098728 ACTGCAACACGAAACAGCAC 59.901 50.000 0.00 0.00 33.35 4.40
1711 1796 0.607620 AGAGCAGAGCAGACCAGAAC 59.392 55.000 0.00 0.00 0.00 3.01
1741 1826 3.111484 TGATCACATACTGGCCTGGTTA 58.889 45.455 14.82 0.00 0.00 2.85
1798 1885 0.379669 CATCGGCTGGCAAGAACATC 59.620 55.000 1.08 0.00 0.00 3.06
1809 1896 6.256321 CCAAAATTTAAGAAATCCATCGGCTG 59.744 38.462 0.00 0.00 0.00 4.85
1838 1936 4.635223 CAAGACTGTCAATCTCTCCAACA 58.365 43.478 10.88 0.00 0.00 3.33
1884 1982 6.385176 ACAGAATGAGACCCAGATTATCTTCA 59.615 38.462 0.00 0.00 39.69 3.02
1913 2011 6.098266 ACAATGCCAAACTTATTATCTTCCCC 59.902 38.462 0.00 0.00 0.00 4.81
1969 2067 9.094578 TCTAATATAGCAAATTCTAGCACTCCT 57.905 33.333 0.00 0.00 0.00 3.69
2013 2111 4.927267 AAGACAGGAAGAGAGAGAGAGA 57.073 45.455 0.00 0.00 0.00 3.10
2015 2113 7.578571 GCATAAAAAGACAGGAAGAGAGAGAGA 60.579 40.741 0.00 0.00 0.00 3.10
2017 2115 6.014242 TGCATAAAAAGACAGGAAGAGAGAGA 60.014 38.462 0.00 0.00 0.00 3.10
2019 2117 6.114187 TGCATAAAAAGACAGGAAGAGAGA 57.886 37.500 0.00 0.00 0.00 3.10
2028 2126 4.074970 AGGTGTCCTGCATAAAAAGACAG 58.925 43.478 0.00 0.00 38.09 3.51
2029 2127 4.098914 AGGTGTCCTGCATAAAAAGACA 57.901 40.909 0.00 0.00 35.20 3.41
2084 2182 4.325028 ACAACTCCGTGTACACACAATA 57.675 40.909 24.98 4.92 46.75 1.90
2088 2186 2.931325 TGAAACAACTCCGTGTACACAC 59.069 45.455 24.98 2.41 43.15 3.82
2141 2239 1.289066 CTTTCGAGCTCCACCGTGA 59.711 57.895 8.47 0.00 0.00 4.35
2142 2240 2.383527 GCTTTCGAGCTCCACCGTG 61.384 63.158 8.47 0.00 0.00 4.94
2144 2242 2.815647 GGCTTTCGAGCTCCACCG 60.816 66.667 8.47 0.00 34.73 4.94
2176 2274 9.877178 GATACGTAGCCTAGTAGGTACTAATAA 57.123 37.037 17.69 1.68 45.48 1.40
2186 2284 6.374565 ACTTTGTGATACGTAGCCTAGTAG 57.625 41.667 8.59 2.41 0.00 2.57
2187 2285 6.764308 AACTTTGTGATACGTAGCCTAGTA 57.236 37.500 8.59 0.00 0.00 1.82
2188 2286 5.656213 AACTTTGTGATACGTAGCCTAGT 57.344 39.130 8.59 3.70 0.00 2.57
2210 2308 5.245751 TGCTTCATCAGGAATAAAAGCCAAA 59.754 36.000 0.00 0.00 35.75 3.28
2211 2309 4.771577 TGCTTCATCAGGAATAAAAGCCAA 59.228 37.500 0.00 0.00 35.75 4.52
2212 2310 4.343231 TGCTTCATCAGGAATAAAAGCCA 58.657 39.130 0.00 0.00 35.75 4.75
2213 2311 4.989279 TGCTTCATCAGGAATAAAAGCC 57.011 40.909 0.00 0.00 35.75 4.35
2214 2312 7.012704 TCAGTATGCTTCATCAGGAATAAAAGC 59.987 37.037 0.00 0.00 36.53 3.51
2215 2313 8.442632 TCAGTATGCTTCATCAGGAATAAAAG 57.557 34.615 0.00 0.00 34.76 2.27
2259 2361 5.244178 ACGACAAGTTCAGAATTAGAGGAGT 59.756 40.000 0.00 0.00 0.00 3.85
2276 2378 7.653767 AAATAAGAGGTTGTAAGACGACAAG 57.346 36.000 0.00 0.00 39.93 3.16
2320 2422 9.502091 TGTACTAAATAGCTGAGAACAATGTTT 57.498 29.630 0.00 0.00 0.00 2.83
2333 2435 6.963796 GCAAGATGCAATGTACTAAATAGCT 58.036 36.000 0.00 0.00 44.26 3.32
2393 2503 7.333672 CGATGAGCTAACCTTTTTAGTTACCTT 59.666 37.037 0.00 0.00 0.00 3.50
2511 2621 7.225931 GTCAACTGTGATAAAGAACAGGTACAA 59.774 37.037 7.63 0.00 42.41 2.41
2515 2625 5.063880 GGTCAACTGTGATAAAGAACAGGT 58.936 41.667 7.63 0.00 45.15 4.00
2518 2628 8.918202 ATAAAGGTCAACTGTGATAAAGAACA 57.082 30.769 0.00 0.00 35.80 3.18
2550 2661 8.935844 TCAGTTAGTTGCACATATTTAGACTTG 58.064 33.333 0.00 0.00 0.00 3.16
2566 2677 2.039084 AGAAGCCCCTGTCAGTTAGTTG 59.961 50.000 0.00 0.00 0.00 3.16
2700 2811 2.099098 GCTTACCCCAAACATGGAATCG 59.901 50.000 0.00 0.00 0.00 3.34
2758 2869 6.238593 GCAGACTGAGAAACAAATTTGACTCT 60.239 38.462 24.64 21.73 32.58 3.24
2965 3077 6.344500 ACACGCATTAATCTTCTTCAGAGAT 58.656 36.000 0.00 0.00 33.87 2.75
3310 3423 9.860650 AACATAGCCAATCCATTGTATAAGTAA 57.139 29.630 0.00 0.00 36.06 2.24
3322 3435 2.026729 TCCGACAAACATAGCCAATCCA 60.027 45.455 0.00 0.00 0.00 3.41
3381 3494 8.780846 TCATACGACTTTAGGAAAAGCAATAA 57.219 30.769 0.00 0.00 45.06 1.40
3395 3508 8.511321 TGCAAGTTTTATGAATCATACGACTTT 58.489 29.630 19.41 9.13 33.45 2.66
3412 3525 9.598517 TTTTGAGAATTCTAACATGCAAGTTTT 57.401 25.926 13.15 0.73 33.07 2.43
3486 3599 0.685458 AGTTGATAGGGGCGTACGGT 60.685 55.000 18.39 0.00 0.00 4.83
3510 3623 2.856222 ACAAAGACAGAAAGGGCAGAG 58.144 47.619 0.00 0.00 0.00 3.35
3607 3720 1.001268 GCGATGAAGAGGAGCGTATCA 60.001 52.381 0.00 0.00 0.00 2.15
3626 3739 3.581024 TGGCATTTTCATCTGACTTGC 57.419 42.857 0.00 0.00 0.00 4.01
3634 3747 4.328983 CAGCTCACAATTGGCATTTTCATC 59.671 41.667 10.83 0.00 0.00 2.92
3673 3797 5.880054 TGCTTCAAGTTAACTCATTAGCC 57.120 39.130 20.14 9.74 0.00 3.93
3687 3811 7.130917 GCATATCTAGTCACAAATGCTTCAAG 58.869 38.462 0.00 0.00 37.37 3.02
3941 4065 6.129053 AGCAAATTTAGCTACATCTCAAGC 57.871 37.500 11.76 0.00 41.32 4.01
4073 4262 4.223320 TCAGCAAACCGTCTGAATTTTC 57.777 40.909 0.00 0.00 36.50 2.29
4100 4289 0.378962 AAAAACAAGTACAGCGCGCA 59.621 45.000 35.10 10.31 0.00 6.09
4207 4396 2.501723 CCATCCCCCTACATATCTTCCG 59.498 54.545 0.00 0.00 0.00 4.30
4218 4407 3.334769 GGTTCTGACCATCCCCCTA 57.665 57.895 0.00 0.00 45.77 3.53
4357 4546 5.626132 CGTGGTTTTACCTCAAATTTAACCG 59.374 40.000 10.63 0.00 39.58 4.44
4359 4548 7.166307 GTGTCGTGGTTTTACCTCAAATTTAAC 59.834 37.037 0.00 0.00 39.58 2.01
4361 4550 6.543100 AGTGTCGTGGTTTTACCTCAAATTTA 59.457 34.615 0.00 0.00 39.58 1.40
4370 4559 8.558700 TCTTAAAATAAGTGTCGTGGTTTTACC 58.441 33.333 0.00 0.00 39.22 2.85
4393 4582 5.831103 ACACCAACATATTTCCTCCATCTT 58.169 37.500 0.00 0.00 0.00 2.40
4397 4586 4.288366 TCAGACACCAACATATTTCCTCCA 59.712 41.667 0.00 0.00 0.00 3.86
4399 4588 7.396540 AAATCAGACACCAACATATTTCCTC 57.603 36.000 0.00 0.00 0.00 3.71
4449 4639 5.085920 TCAATGACCAATCCCACAATTCTT 58.914 37.500 0.00 0.00 0.00 2.52
4544 4736 1.125021 CACAGATTCAGCAACGACGAC 59.875 52.381 0.00 0.00 0.00 4.34
4547 4739 3.364366 CCTTTCACAGATTCAGCAACGAC 60.364 47.826 0.00 0.00 0.00 4.34
4570 4762 4.482386 GTTGGCGAAGGAAAAAGGAATAC 58.518 43.478 0.00 0.00 0.00 1.89
4776 5022 2.104859 CAGTGCGTGCCATCTGGAG 61.105 63.158 0.00 0.00 37.39 3.86
4821 5067 4.059459 GCCGTTGCGTGACGTGAG 62.059 66.667 6.91 0.00 41.26 3.51
4852 5099 0.654472 GTTGTTTCTGCGTGAGTGCG 60.654 55.000 0.00 0.00 37.81 5.34
4890 5137 1.008194 CACGTGAAAGACCGTCCGA 60.008 57.895 10.90 0.00 34.59 4.55
4957 5204 7.481275 ACAGATTTTTGTTATTTTGCACCAG 57.519 32.000 0.00 0.00 0.00 4.00
4958 5205 7.856145 AACAGATTTTTGTTATTTTGCACCA 57.144 28.000 0.00 0.00 39.40 4.17
4987 5234 9.484326 CAACTTTATTTTGGTAAAAAGTGCAAC 57.516 29.630 0.00 0.00 38.62 4.17
4988 5235 8.178313 GCAACTTTATTTTGGTAAAAAGTGCAA 58.822 29.630 0.00 0.00 38.62 4.08
4989 5236 7.334421 TGCAACTTTATTTTGGTAAAAAGTGCA 59.666 29.630 14.20 14.20 38.62 4.57
4990 5237 7.638295 GTGCAACTTTATTTTGGTAAAAAGTGC 59.362 33.333 0.00 7.01 38.62 4.40
4991 5238 8.119845 GGTGCAACTTTATTTTGGTAAAAAGTG 58.880 33.333 0.00 0.00 36.38 3.16
4992 5239 8.044309 AGGTGCAACTTTATTTTGGTAAAAAGT 58.956 29.630 0.00 0.00 36.38 2.66
4993 5240 8.432110 AGGTGCAACTTTATTTTGGTAAAAAG 57.568 30.769 0.00 0.00 36.38 2.27
4994 5241 8.794335 AAGGTGCAACTTTATTTTGGTAAAAA 57.206 26.923 12.33 0.00 32.75 1.94
4995 5242 8.794335 AAAGGTGCAACTTTATTTTGGTAAAA 57.206 26.923 27.97 0.00 33.74 1.52
4996 5243 8.794335 AAAAGGTGCAACTTTATTTTGGTAAA 57.206 26.923 29.14 0.00 39.63 2.01
4997 5244 9.535878 CTAAAAGGTGCAACTTTATTTTGGTAA 57.464 29.630 29.14 6.58 39.63 2.85
4998 5245 8.697292 ACTAAAAGGTGCAACTTTATTTTGGTA 58.303 29.630 29.14 14.92 39.63 3.25
4999 5246 7.561251 ACTAAAAGGTGCAACTTTATTTTGGT 58.439 30.769 29.14 18.26 39.63 3.67
5000 5247 7.096230 CGACTAAAAGGTGCAACTTTATTTTGG 60.096 37.037 29.14 17.63 39.63 3.28
5001 5248 7.646130 TCGACTAAAAGGTGCAACTTTATTTTG 59.354 33.333 29.14 18.53 39.63 2.44
5002 5249 7.708998 TCGACTAAAAGGTGCAACTTTATTTT 58.291 30.769 29.14 16.38 39.63 1.82
5003 5250 7.012989 ACTCGACTAAAAGGTGCAACTTTATTT 59.987 33.333 29.14 16.74 39.63 1.40
5004 5251 6.485648 ACTCGACTAAAAGGTGCAACTTTATT 59.514 34.615 29.14 17.46 39.63 1.40
5005 5252 5.995897 ACTCGACTAAAAGGTGCAACTTTAT 59.004 36.000 29.14 20.19 39.63 1.40
5006 5253 5.362263 ACTCGACTAAAAGGTGCAACTTTA 58.638 37.500 29.14 16.09 39.63 1.85
5007 5254 4.196971 ACTCGACTAAAAGGTGCAACTTT 58.803 39.130 24.05 24.05 42.17 2.66
5008 5255 3.805207 ACTCGACTAAAAGGTGCAACTT 58.195 40.909 12.33 12.33 36.74 2.66
5009 5256 3.470645 ACTCGACTAAAAGGTGCAACT 57.529 42.857 0.00 0.00 36.74 3.16
5010 5257 4.689345 ACATACTCGACTAAAAGGTGCAAC 59.311 41.667 0.00 0.00 0.00 4.17
5011 5258 4.890088 ACATACTCGACTAAAAGGTGCAA 58.110 39.130 0.00 0.00 0.00 4.08
5012 5259 4.219944 AGACATACTCGACTAAAAGGTGCA 59.780 41.667 0.00 0.00 0.00 4.57
5013 5260 4.745649 AGACATACTCGACTAAAAGGTGC 58.254 43.478 0.00 0.00 0.00 5.01
5043 5290 8.953223 ACGGAGGGAGTATAGTATAGAAAAAT 57.047 34.615 0.00 0.00 0.00 1.82
5044 5291 7.449704 GGACGGAGGGAGTATAGTATAGAAAAA 59.550 40.741 0.00 0.00 0.00 1.94
5045 5292 6.944862 GGACGGAGGGAGTATAGTATAGAAAA 59.055 42.308 0.00 0.00 0.00 2.29
5046 5293 6.479884 GGACGGAGGGAGTATAGTATAGAAA 58.520 44.000 0.00 0.00 0.00 2.52
5047 5294 5.337894 CGGACGGAGGGAGTATAGTATAGAA 60.338 48.000 0.00 0.00 0.00 2.10
5048 5295 4.161189 CGGACGGAGGGAGTATAGTATAGA 59.839 50.000 0.00 0.00 0.00 1.98
5049 5296 4.161189 TCGGACGGAGGGAGTATAGTATAG 59.839 50.000 0.00 0.00 0.00 1.31
5050 5297 4.096681 TCGGACGGAGGGAGTATAGTATA 58.903 47.826 0.00 0.00 0.00 1.47
5051 5298 2.909006 TCGGACGGAGGGAGTATAGTAT 59.091 50.000 0.00 0.00 0.00 2.12
5052 5299 2.329267 TCGGACGGAGGGAGTATAGTA 58.671 52.381 0.00 0.00 0.00 1.82
5053 5300 1.135094 TCGGACGGAGGGAGTATAGT 58.865 55.000 0.00 0.00 0.00 2.12
5054 5301 2.267174 TTCGGACGGAGGGAGTATAG 57.733 55.000 0.00 0.00 0.00 1.31
5055 5302 2.734755 TTTCGGACGGAGGGAGTATA 57.265 50.000 0.00 0.00 0.00 1.47
5056 5303 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
5057 5304 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
5058 5305 1.856629 TATTTTCGGACGGAGGGAGT 58.143 50.000 0.00 0.00 0.00 3.85
5059 5306 3.470645 AATATTTTCGGACGGAGGGAG 57.529 47.619 0.00 0.00 0.00 4.30
5060 5307 3.054948 ACAAATATTTTCGGACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
5061 5308 3.275999 ACAAATATTTTCGGACGGAGGG 58.724 45.455 0.00 0.00 0.00 4.30
5062 5309 3.000925 CGACAAATATTTTCGGACGGAGG 59.999 47.826 17.59 1.05 0.00 4.30
5063 5310 4.178156 CGACAAATATTTTCGGACGGAG 57.822 45.455 17.59 1.61 0.00 4.63
5070 5317 4.035091 TCCATGCTCCGACAAATATTTTCG 59.965 41.667 18.06 18.06 0.00 3.46
5071 5318 5.499139 TCCATGCTCCGACAAATATTTTC 57.501 39.130 0.00 0.00 0.00 2.29
5072 5319 5.360714 ACATCCATGCTCCGACAAATATTTT 59.639 36.000 0.00 0.00 0.00 1.82
5073 5320 4.889409 ACATCCATGCTCCGACAAATATTT 59.111 37.500 0.00 0.00 0.00 1.40
5074 5321 4.464008 ACATCCATGCTCCGACAAATATT 58.536 39.130 0.00 0.00 0.00 1.28
5075 5322 4.090761 ACATCCATGCTCCGACAAATAT 57.909 40.909 0.00 0.00 0.00 1.28
5076 5323 3.558931 ACATCCATGCTCCGACAAATA 57.441 42.857 0.00 0.00 0.00 1.40
5077 5324 2.425143 ACATCCATGCTCCGACAAAT 57.575 45.000 0.00 0.00 0.00 2.32
5078 5325 3.134623 AGATACATCCATGCTCCGACAAA 59.865 43.478 0.00 0.00 0.00 2.83
5079 5326 2.700371 AGATACATCCATGCTCCGACAA 59.300 45.455 0.00 0.00 0.00 3.18
5080 5327 2.319844 AGATACATCCATGCTCCGACA 58.680 47.619 0.00 0.00 0.00 4.35
5081 5328 3.062763 CAAGATACATCCATGCTCCGAC 58.937 50.000 0.00 0.00 0.00 4.79
5082 5329 2.965147 TCAAGATACATCCATGCTCCGA 59.035 45.455 0.00 0.00 0.00 4.55
5083 5330 3.062763 GTCAAGATACATCCATGCTCCG 58.937 50.000 0.00 0.00 0.00 4.63
5084 5331 3.062763 CGTCAAGATACATCCATGCTCC 58.937 50.000 0.00 0.00 0.00 4.70
5085 5332 3.722147 ACGTCAAGATACATCCATGCTC 58.278 45.455 0.00 0.00 0.00 4.26
5086 5333 3.827008 ACGTCAAGATACATCCATGCT 57.173 42.857 0.00 0.00 0.00 3.79
5087 5334 6.545504 AAATACGTCAAGATACATCCATGC 57.454 37.500 0.00 0.00 0.00 4.06
5121 5368 9.890629 CGGAGGAATGAGATAAAAATGGATATA 57.109 33.333 0.00 0.00 0.00 0.86
5122 5369 8.605947 TCGGAGGAATGAGATAAAAATGGATAT 58.394 33.333 0.00 0.00 0.00 1.63
5123 5370 7.973402 TCGGAGGAATGAGATAAAAATGGATA 58.027 34.615 0.00 0.00 0.00 2.59
5124 5371 6.841601 TCGGAGGAATGAGATAAAAATGGAT 58.158 36.000 0.00 0.00 0.00 3.41
5125 5372 6.247229 TCGGAGGAATGAGATAAAAATGGA 57.753 37.500 0.00 0.00 0.00 3.41
5126 5373 8.621532 TTATCGGAGGAATGAGATAAAAATGG 57.378 34.615 0.00 0.00 34.02 3.16
5127 5374 9.277783 ACTTATCGGAGGAATGAGATAAAAATG 57.722 33.333 0.00 0.00 35.82 2.32
5133 5380 9.535170 AGAAATACTTATCGGAGGAATGAGATA 57.465 33.333 0.00 0.00 0.00 1.98
5134 5381 8.310382 CAGAAATACTTATCGGAGGAATGAGAT 58.690 37.037 0.00 0.00 0.00 2.75
5135 5382 7.505923 TCAGAAATACTTATCGGAGGAATGAGA 59.494 37.037 0.00 0.00 0.00 3.27
5136 5383 7.661968 TCAGAAATACTTATCGGAGGAATGAG 58.338 38.462 0.00 0.00 0.00 2.90
5137 5384 7.597288 TCAGAAATACTTATCGGAGGAATGA 57.403 36.000 0.00 0.00 0.00 2.57
5138 5385 7.096023 CGTTCAGAAATACTTATCGGAGGAATG 60.096 40.741 0.00 0.00 0.00 2.67
5139 5386 6.924060 CGTTCAGAAATACTTATCGGAGGAAT 59.076 38.462 0.00 0.00 0.00 3.01
5140 5387 6.270815 CGTTCAGAAATACTTATCGGAGGAA 58.729 40.000 0.00 0.00 0.00 3.36
5141 5388 5.221185 CCGTTCAGAAATACTTATCGGAGGA 60.221 44.000 0.00 0.00 35.75 3.71
5142 5389 4.982916 CCGTTCAGAAATACTTATCGGAGG 59.017 45.833 0.00 0.00 35.75 4.30
5143 5390 5.828747 TCCGTTCAGAAATACTTATCGGAG 58.171 41.667 3.75 0.00 36.86 4.63
5144 5391 5.221185 CCTCCGTTCAGAAATACTTATCGGA 60.221 44.000 6.98 6.98 38.18 4.55
5145 5392 4.982916 CCTCCGTTCAGAAATACTTATCGG 59.017 45.833 0.00 0.00 35.38 4.18
5146 5393 4.982916 CCCTCCGTTCAGAAATACTTATCG 59.017 45.833 0.00 0.00 0.00 2.92
5147 5394 6.158023 TCCCTCCGTTCAGAAATACTTATC 57.842 41.667 0.00 0.00 0.00 1.75
5148 5395 5.661759 ACTCCCTCCGTTCAGAAATACTTAT 59.338 40.000 0.00 0.00 0.00 1.73
5149 5396 5.021458 ACTCCCTCCGTTCAGAAATACTTA 58.979 41.667 0.00 0.00 0.00 2.24
5150 5397 3.838903 ACTCCCTCCGTTCAGAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
5151 5398 3.442076 ACTCCCTCCGTTCAGAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
5152 5399 3.889520 ACTCCCTCCGTTCAGAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
5153 5400 6.555463 AAATACTCCCTCCGTTCAGAAATA 57.445 37.500 0.00 0.00 0.00 1.40
5154 5401 5.437191 AAATACTCCCTCCGTTCAGAAAT 57.563 39.130 0.00 0.00 0.00 2.17
5155 5402 4.903045 AAATACTCCCTCCGTTCAGAAA 57.097 40.909 0.00 0.00 0.00 2.52
5156 5403 5.266788 TCTAAATACTCCCTCCGTTCAGAA 58.733 41.667 0.00 0.00 0.00 3.02
5157 5404 4.863548 TCTAAATACTCCCTCCGTTCAGA 58.136 43.478 0.00 0.00 0.00 3.27
5158 5405 5.593679 TTCTAAATACTCCCTCCGTTCAG 57.406 43.478 0.00 0.00 0.00 3.02
5159 5406 6.363167 TTTTCTAAATACTCCCTCCGTTCA 57.637 37.500 0.00 0.00 0.00 3.18
5160 5407 8.953368 TTATTTTCTAAATACTCCCTCCGTTC 57.047 34.615 0.00 0.00 0.00 3.95
5161 5408 7.498239 GCTTATTTTCTAAATACTCCCTCCGTT 59.502 37.037 0.00 0.00 0.00 4.44
5162 5409 6.990939 GCTTATTTTCTAAATACTCCCTCCGT 59.009 38.462 0.00 0.00 0.00 4.69
5163 5410 6.427242 GGCTTATTTTCTAAATACTCCCTCCG 59.573 42.308 0.00 0.00 0.00 4.63
5164 5411 7.287810 TGGCTTATTTTCTAAATACTCCCTCC 58.712 38.462 0.00 0.00 0.00 4.30
5165 5412 7.445707 CCTGGCTTATTTTCTAAATACTCCCTC 59.554 40.741 0.00 0.00 0.00 4.30
5166 5413 7.290813 CCTGGCTTATTTTCTAAATACTCCCT 58.709 38.462 0.00 0.00 0.00 4.20
5167 5414 6.016192 GCCTGGCTTATTTTCTAAATACTCCC 60.016 42.308 12.43 0.00 0.00 4.30
5168 5415 6.293462 CGCCTGGCTTATTTTCTAAATACTCC 60.293 42.308 17.92 0.00 0.00 3.85
5169 5416 6.482308 TCGCCTGGCTTATTTTCTAAATACTC 59.518 38.462 17.92 0.00 0.00 2.59
5170 5417 6.354130 TCGCCTGGCTTATTTTCTAAATACT 58.646 36.000 17.92 0.00 0.00 2.12
5171 5418 6.613755 TCGCCTGGCTTATTTTCTAAATAC 57.386 37.500 17.92 0.00 0.00 1.89
5172 5419 7.338449 AGTTTCGCCTGGCTTATTTTCTAAATA 59.662 33.333 17.92 0.00 0.00 1.40
5173 5420 6.152831 AGTTTCGCCTGGCTTATTTTCTAAAT 59.847 34.615 17.92 0.00 0.00 1.40
5174 5421 5.475564 AGTTTCGCCTGGCTTATTTTCTAAA 59.524 36.000 17.92 0.90 0.00 1.85
5175 5422 5.007682 AGTTTCGCCTGGCTTATTTTCTAA 58.992 37.500 17.92 0.00 0.00 2.10
5176 5423 4.585879 AGTTTCGCCTGGCTTATTTTCTA 58.414 39.130 17.92 0.00 0.00 2.10
5177 5424 3.421844 AGTTTCGCCTGGCTTATTTTCT 58.578 40.909 17.92 3.25 0.00 2.52
5178 5425 3.850122 AGTTTCGCCTGGCTTATTTTC 57.150 42.857 17.92 0.95 0.00 2.29
5179 5426 4.600692 AAAGTTTCGCCTGGCTTATTTT 57.399 36.364 17.92 7.95 0.00 1.82
5180 5427 4.600692 AAAAGTTTCGCCTGGCTTATTT 57.399 36.364 17.92 7.63 0.00 1.40
5181 5428 4.202212 ACAAAAAGTTTCGCCTGGCTTATT 60.202 37.500 17.92 1.53 0.00 1.40
5182 5429 3.320826 ACAAAAAGTTTCGCCTGGCTTAT 59.679 39.130 17.92 0.00 0.00 1.73
5183 5430 2.691011 ACAAAAAGTTTCGCCTGGCTTA 59.309 40.909 17.92 1.32 0.00 3.09
5184 5431 1.480545 ACAAAAAGTTTCGCCTGGCTT 59.519 42.857 17.92 0.05 0.00 4.35
5185 5432 1.067060 GACAAAAAGTTTCGCCTGGCT 59.933 47.619 17.92 0.00 0.00 4.75
5186 5433 1.202359 TGACAAAAAGTTTCGCCTGGC 60.202 47.619 9.11 9.11 0.00 4.85
5187 5434 2.861462 TGACAAAAAGTTTCGCCTGG 57.139 45.000 0.00 0.00 0.00 4.45
5188 5435 4.610945 AGATTGACAAAAAGTTTCGCCTG 58.389 39.130 0.00 0.00 0.00 4.85
5189 5436 4.918810 AGATTGACAAAAAGTTTCGCCT 57.081 36.364 0.00 0.00 0.00 5.52
5190 5437 5.966636 AAAGATTGACAAAAAGTTTCGCC 57.033 34.783 0.00 0.00 0.00 5.54
5214 5461 0.179012 GGGACGTGGTGGGAGAAAAA 60.179 55.000 0.00 0.00 0.00 1.94
5215 5462 1.057851 AGGGACGTGGTGGGAGAAAA 61.058 55.000 0.00 0.00 0.00 2.29
5216 5463 1.057851 AAGGGACGTGGTGGGAGAAA 61.058 55.000 0.00 0.00 0.00 2.52
5217 5464 1.460689 AAGGGACGTGGTGGGAGAA 60.461 57.895 0.00 0.00 0.00 2.87
5218 5465 1.911766 GAAGGGACGTGGTGGGAGA 60.912 63.158 0.00 0.00 0.00 3.71
5219 5466 2.172483 CTGAAGGGACGTGGTGGGAG 62.172 65.000 0.00 0.00 0.00 4.30
5220 5467 2.122769 TGAAGGGACGTGGTGGGA 60.123 61.111 0.00 0.00 0.00 4.37
5221 5468 2.052047 AACTGAAGGGACGTGGTGGG 62.052 60.000 0.00 0.00 0.00 4.61
5222 5469 0.884704 CAACTGAAGGGACGTGGTGG 60.885 60.000 0.00 0.00 0.00 4.61
5223 5470 0.884704 CCAACTGAAGGGACGTGGTG 60.885 60.000 0.00 0.00 0.00 4.17
5224 5471 1.342672 ACCAACTGAAGGGACGTGGT 61.343 55.000 0.00 0.00 0.00 4.16
5225 5472 0.179029 AACCAACTGAAGGGACGTGG 60.179 55.000 0.00 0.00 0.00 4.94
5226 5473 1.675552 AAACCAACTGAAGGGACGTG 58.324 50.000 0.00 0.00 0.00 4.49
5227 5474 2.092592 AGAAAACCAACTGAAGGGACGT 60.093 45.455 0.00 0.00 0.00 4.34
5228 5475 2.572290 AGAAAACCAACTGAAGGGACG 58.428 47.619 0.00 0.00 0.00 4.79
5229 5476 4.401202 TGAAAGAAAACCAACTGAAGGGAC 59.599 41.667 0.00 0.00 0.00 4.46
5230 5477 4.605183 TGAAAGAAAACCAACTGAAGGGA 58.395 39.130 0.00 0.00 0.00 4.20
5231 5478 5.109210 GTTGAAAGAAAACCAACTGAAGGG 58.891 41.667 0.00 0.00 37.69 3.95
5232 5479 5.109210 GGTTGAAAGAAAACCAACTGAAGG 58.891 41.667 0.00 0.00 45.41 3.46
5233 5480 4.798387 CGGTTGAAAGAAAACCAACTGAAG 59.202 41.667 0.00 0.00 46.24 3.02
5234 5481 4.218852 ACGGTTGAAAGAAAACCAACTGAA 59.781 37.500 17.03 0.00 46.24 3.02
5235 5482 3.759618 ACGGTTGAAAGAAAACCAACTGA 59.240 39.130 17.03 0.00 46.24 3.41
5236 5483 4.104696 ACGGTTGAAAGAAAACCAACTG 57.895 40.909 0.00 0.00 46.24 3.16
5237 5484 4.794278 AACGGTTGAAAGAAAACCAACT 57.206 36.364 6.19 0.00 46.24 3.16
5238 5485 4.924462 TGAAACGGTTGAAAGAAAACCAAC 59.076 37.500 0.00 0.00 46.24 3.77
5239 5486 5.135508 TGAAACGGTTGAAAGAAAACCAA 57.864 34.783 0.00 0.00 46.24 3.67
5240 5487 4.785511 TGAAACGGTTGAAAGAAAACCA 57.214 36.364 0.00 0.00 46.24 3.67
5241 5488 5.106442 ACATGAAACGGTTGAAAGAAAACC 58.894 37.500 0.00 0.00 43.11 3.27
5242 5489 6.641176 AACATGAAACGGTTGAAAGAAAAC 57.359 33.333 0.00 0.00 0.00 2.43
5243 5490 6.091441 CCAAACATGAAACGGTTGAAAGAAAA 59.909 34.615 0.00 0.00 0.00 2.29
5244 5491 5.578727 CCAAACATGAAACGGTTGAAAGAAA 59.421 36.000 0.00 0.00 0.00 2.52
5245 5492 5.105752 CCAAACATGAAACGGTTGAAAGAA 58.894 37.500 0.00 0.00 0.00 2.52
5246 5493 4.677584 CCAAACATGAAACGGTTGAAAGA 58.322 39.130 0.00 0.00 0.00 2.52
5247 5494 3.245048 GCCAAACATGAAACGGTTGAAAG 59.755 43.478 0.00 0.00 0.00 2.62
5248 5495 3.118956 AGCCAAACATGAAACGGTTGAAA 60.119 39.130 0.00 0.00 0.00 2.69
5249 5496 2.428890 AGCCAAACATGAAACGGTTGAA 59.571 40.909 0.00 0.00 0.00 2.69
5250 5497 2.028130 AGCCAAACATGAAACGGTTGA 58.972 42.857 0.00 0.00 0.00 3.18
5251 5498 2.126467 CAGCCAAACATGAAACGGTTG 58.874 47.619 0.00 0.00 0.00 3.77
5252 5499 1.068434 CCAGCCAAACATGAAACGGTT 59.932 47.619 0.00 0.00 0.00 4.44
5253 5500 0.673437 CCAGCCAAACATGAAACGGT 59.327 50.000 0.00 0.00 0.00 4.83
5254 5501 0.038343 CCCAGCCAAACATGAAACGG 60.038 55.000 0.00 0.00 0.00 4.44
5255 5502 0.958091 TCCCAGCCAAACATGAAACG 59.042 50.000 0.00 0.00 0.00 3.60
5256 5503 1.963515 AGTCCCAGCCAAACATGAAAC 59.036 47.619 0.00 0.00 0.00 2.78
5257 5504 2.380064 AGTCCCAGCCAAACATGAAA 57.620 45.000 0.00 0.00 0.00 2.69
5258 5505 2.238521 GAAGTCCCAGCCAAACATGAA 58.761 47.619 0.00 0.00 0.00 2.57
5259 5506 1.547675 GGAAGTCCCAGCCAAACATGA 60.548 52.381 0.00 0.00 34.14 3.07
5260 5507 0.890683 GGAAGTCCCAGCCAAACATG 59.109 55.000 0.00 0.00 34.14 3.21
5261 5508 3.363787 GGAAGTCCCAGCCAAACAT 57.636 52.632 0.00 0.00 34.14 2.71
5262 5509 4.920828 GGAAGTCCCAGCCAAACA 57.079 55.556 0.00 0.00 34.14 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.