Multiple sequence alignment - TraesCS3A01G339600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G339600 chr3A 100.000 3180 0 0 1 3180 586424145 586420966 0.000000e+00 5873.0
1 TraesCS3A01G339600 chr3A 85.366 82 5 4 2475 2549 137914489 137914408 9.460000e-11 78.7
2 TraesCS3A01G339600 chr3B 89.695 3086 139 73 173 3178 583393776 583390790 0.000000e+00 3771.0
3 TraesCS3A01G339600 chr3D 92.602 1906 92 28 1306 3180 445038012 445036125 0.000000e+00 2693.0
4 TraesCS3A01G339600 chr3D 86.755 1057 58 33 227 1247 445039040 445038030 0.000000e+00 1101.0
5 TraesCS3A01G339600 chr3D 89.401 217 19 4 1037 1253 33858885 33858673 1.450000e-68 270.0
6 TraesCS3A01G339600 chr3D 86.905 84 3 5 2477 2552 311668881 311668798 1.570000e-13 87.9
7 TraesCS3A01G339600 chr6D 89.823 226 15 4 1624 1849 384196354 384196137 1.870000e-72 283.0
8 TraesCS3A01G339600 chr6D 89.545 220 15 4 1624 1843 322697881 322698092 4.040000e-69 272.0
9 TraesCS3A01G339600 chr2D 89.238 223 16 4 1627 1849 614385446 614385232 4.040000e-69 272.0
10 TraesCS3A01G339600 chrUn 90.000 210 19 2 1037 1246 240676920 240677127 1.450000e-68 270.0
11 TraesCS3A01G339600 chrUn 89.091 220 16 4 1624 1843 162682310 162682521 1.880000e-67 267.0
12 TraesCS3A01G339600 chr2B 88.362 232 17 7 1624 1854 50580978 50580756 1.450000e-68 270.0
13 TraesCS3A01G339600 chr2B 89.474 57 6 0 1094 1150 83955349 83955293 4.400000e-09 73.1
14 TraesCS3A01G339600 chr7D 84.615 273 32 8 1043 1312 555231887 555231622 2.430000e-66 263.0
15 TraesCS3A01G339600 chr7D 78.899 109 23 0 1504 1612 420742519 420742411 1.220000e-09 75.0
16 TraesCS3A01G339600 chr4B 88.053 226 19 4 1624 1849 608366989 608366772 8.750000e-66 261.0
17 TraesCS3A01G339600 chr4B 83.613 238 27 6 1383 1620 103056202 103055977 2.480000e-51 213.0
18 TraesCS3A01G339600 chr2A 88.053 226 19 5 1624 1849 722102192 722101975 8.750000e-66 261.0
19 TraesCS3A01G339600 chr5D 83.045 289 40 6 1366 1651 519277430 519277712 1.460000e-63 254.0
20 TraesCS3A01G339600 chr5D 80.769 234 40 5 1370 1602 238066458 238066687 9.060000e-41 178.0
21 TraesCS3A01G339600 chr4A 83.193 238 28 6 1383 1620 521919704 521919479 1.160000e-49 207.0
22 TraesCS3A01G339600 chr4D 82.773 238 29 6 1383 1620 69679956 69679731 5.380000e-48 202.0
23 TraesCS3A01G339600 chr4D 86.667 75 10 0 1076 1150 305141042 305141116 2.030000e-12 84.2
24 TraesCS3A01G339600 chr4D 82.759 87 15 0 1520 1606 481912154 481912068 9.460000e-11 78.7
25 TraesCS3A01G339600 chr5A 81.124 249 42 5 1370 1617 317247921 317247677 9.000000e-46 195.0
26 TraesCS3A01G339600 chr5B 80.321 249 44 5 1370 1617 267779038 267778794 1.950000e-42 183.0
27 TraesCS3A01G339600 chr5B 92.857 42 3 0 2503 2544 252322662 252322703 9.520000e-06 62.1
28 TraesCS3A01G339600 chr7A 77.632 152 31 2 1461 1612 512329043 512329191 4.370000e-14 89.8
29 TraesCS3A01G339600 chr7B 79.817 109 22 0 1504 1612 436787462 436787354 2.630000e-11 80.5
30 TraesCS3A01G339600 chr1D 80.189 106 13 5 2444 2549 253207862 253207959 4.400000e-09 73.1
31 TraesCS3A01G339600 chr1D 94.737 38 2 0 2505 2542 59125508 59125545 3.430000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G339600 chr3A 586420966 586424145 3179 True 5873 5873 100.0000 1 3180 1 chr3A.!!$R2 3179
1 TraesCS3A01G339600 chr3B 583390790 583393776 2986 True 3771 3771 89.6950 173 3178 1 chr3B.!!$R1 3005
2 TraesCS3A01G339600 chr3D 445036125 445039040 2915 True 1897 2693 89.6785 227 3180 2 chr3D.!!$R3 2953

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 528 0.104487 ATGCAGCAGATGAGAGGTCG 59.896 55.0 0.0 0.0 0.00 4.79 F
1312 1406 0.107945 CCTCCTTCTTGGCTTCCTCG 60.108 60.0 0.0 0.0 35.26 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1316 1410 0.181114 AGCACACACTGAAGGAGCAA 59.819 50.000 0.0 0.0 0.0 3.91 R
3011 3183 2.205074 AGCTTGTTCTGTCAGTTGTCG 58.795 47.619 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.772332 AATGACATATGTACTTCCTTCGTTC 57.228 36.000 8.71 0.00 0.00 3.95
26 27 6.275494 TGACATATGTACTTCCTTCGTTCA 57.725 37.500 8.71 0.00 0.00 3.18
27 28 6.873997 TGACATATGTACTTCCTTCGTTCAT 58.126 36.000 8.71 0.00 0.00 2.57
28 29 6.756542 TGACATATGTACTTCCTTCGTTCATG 59.243 38.462 8.71 0.00 0.00 3.07
29 30 6.873997 ACATATGTACTTCCTTCGTTCATGA 58.126 36.000 6.56 0.00 0.00 3.07
30 31 7.327975 ACATATGTACTTCCTTCGTTCATGAA 58.672 34.615 6.56 3.38 0.00 2.57
31 32 7.987458 ACATATGTACTTCCTTCGTTCATGAAT 59.013 33.333 12.12 0.00 0.00 2.57
32 33 9.476202 CATATGTACTTCCTTCGTTCATGAATA 57.524 33.333 12.12 0.07 0.00 1.75
36 37 9.529325 TGTACTTCCTTCGTTCATGAATATAAG 57.471 33.333 12.12 14.16 0.00 1.73
37 38 9.745880 GTACTTCCTTCGTTCATGAATATAAGA 57.254 33.333 12.12 4.05 0.00 2.10
39 40 9.265901 ACTTCCTTCGTTCATGAATATAAGATG 57.734 33.333 12.12 10.62 0.00 2.90
40 41 9.265901 CTTCCTTCGTTCATGAATATAAGATGT 57.734 33.333 12.12 0.00 0.00 3.06
41 42 9.613428 TTCCTTCGTTCATGAATATAAGATGTT 57.387 29.630 12.12 0.00 0.00 2.71
42 43 9.045223 TCCTTCGTTCATGAATATAAGATGTTG 57.955 33.333 12.12 3.65 0.00 3.33
43 44 8.830580 CCTTCGTTCATGAATATAAGATGTTGT 58.169 33.333 12.12 0.00 0.00 3.32
79 80 9.836864 TCTGAATTAAATGTACATAGACATGCT 57.163 29.630 9.21 0.00 39.99 3.79
86 87 8.792830 AAATGTACATAGACATGCTTTAGTGT 57.207 30.769 9.21 0.00 39.99 3.55
87 88 9.884636 AAATGTACATAGACATGCTTTAGTGTA 57.115 29.630 9.21 0.00 39.99 2.90
89 90 8.871686 TGTACATAGACATGCTTTAGTGTATG 57.128 34.615 7.81 7.81 43.59 2.39
91 92 7.776933 ACATAGACATGCTTTAGTGTATGTG 57.223 36.000 12.60 3.48 46.76 3.21
92 93 7.331026 ACATAGACATGCTTTAGTGTATGTGT 58.669 34.615 12.60 4.01 46.76 3.72
93 94 7.824289 ACATAGACATGCTTTAGTGTATGTGTT 59.176 33.333 12.60 0.00 46.76 3.32
94 95 9.313118 CATAGACATGCTTTAGTGTATGTGTTA 57.687 33.333 3.21 0.00 41.89 2.41
95 96 7.596749 AGACATGCTTTAGTGTATGTGTTAC 57.403 36.000 3.21 0.00 41.89 2.50
96 97 7.386851 AGACATGCTTTAGTGTATGTGTTACT 58.613 34.615 3.21 0.00 41.89 2.24
97 98 7.545965 AGACATGCTTTAGTGTATGTGTTACTC 59.454 37.037 3.21 0.00 41.89 2.59
98 99 6.310467 ACATGCTTTAGTGTATGTGTTACTCG 59.690 38.462 0.00 0.00 40.69 4.18
99 100 5.775686 TGCTTTAGTGTATGTGTTACTCGT 58.224 37.500 0.00 0.00 31.13 4.18
100 101 6.218019 TGCTTTAGTGTATGTGTTACTCGTT 58.782 36.000 0.00 0.00 31.13 3.85
101 102 6.702723 TGCTTTAGTGTATGTGTTACTCGTTT 59.297 34.615 0.00 0.00 31.13 3.60
102 103 7.095940 TGCTTTAGTGTATGTGTTACTCGTTTC 60.096 37.037 0.00 0.00 31.13 2.78
103 104 7.095940 GCTTTAGTGTATGTGTTACTCGTTTCA 60.096 37.037 0.00 0.00 31.13 2.69
104 105 8.645730 TTTAGTGTATGTGTTACTCGTTTCAA 57.354 30.769 0.00 0.00 31.13 2.69
105 106 8.821147 TTAGTGTATGTGTTACTCGTTTCAAT 57.179 30.769 0.00 0.00 31.13 2.57
106 107 9.911138 TTAGTGTATGTGTTACTCGTTTCAATA 57.089 29.630 0.00 0.00 31.13 1.90
107 108 8.997621 AGTGTATGTGTTACTCGTTTCAATAT 57.002 30.769 0.00 0.00 31.13 1.28
140 141 5.407407 AGACATTAATATAGACCGCCTGG 57.593 43.478 0.00 0.00 42.84 4.45
141 142 5.084519 AGACATTAATATAGACCGCCTGGA 58.915 41.667 0.00 0.00 39.21 3.86
142 143 5.721960 AGACATTAATATAGACCGCCTGGAT 59.278 40.000 0.00 0.00 39.21 3.41
143 144 6.213600 AGACATTAATATAGACCGCCTGGATT 59.786 38.462 0.00 0.00 39.21 3.01
144 145 7.399191 AGACATTAATATAGACCGCCTGGATTA 59.601 37.037 0.00 0.00 39.21 1.75
145 146 7.913789 ACATTAATATAGACCGCCTGGATTAA 58.086 34.615 0.00 0.00 39.21 1.40
146 147 8.548877 ACATTAATATAGACCGCCTGGATTAAT 58.451 33.333 0.00 0.00 35.77 1.40
147 148 8.830580 CATTAATATAGACCGCCTGGATTAATG 58.169 37.037 13.93 13.93 40.29 1.90
148 149 6.374417 AATATAGACCGCCTGGATTAATGT 57.626 37.500 0.00 0.00 39.21 2.71
149 150 2.622064 AGACCGCCTGGATTAATGTC 57.378 50.000 0.00 0.00 39.21 3.06
150 151 2.119495 AGACCGCCTGGATTAATGTCT 58.881 47.619 0.00 0.00 39.21 3.41
151 152 2.505819 AGACCGCCTGGATTAATGTCTT 59.494 45.455 0.00 0.00 39.21 3.01
152 153 3.709653 AGACCGCCTGGATTAATGTCTTA 59.290 43.478 0.00 0.00 39.21 2.10
153 154 4.163458 AGACCGCCTGGATTAATGTCTTAA 59.837 41.667 0.00 0.00 39.21 1.85
154 155 5.048846 ACCGCCTGGATTAATGTCTTAAT 57.951 39.130 0.00 0.00 39.67 1.40
155 156 5.445964 ACCGCCTGGATTAATGTCTTAATT 58.554 37.500 0.00 0.00 37.61 1.40
156 157 5.891551 ACCGCCTGGATTAATGTCTTAATTT 59.108 36.000 0.00 0.00 37.61 1.82
157 158 6.379988 ACCGCCTGGATTAATGTCTTAATTTT 59.620 34.615 0.00 0.00 37.61 1.82
158 159 7.093509 ACCGCCTGGATTAATGTCTTAATTTTT 60.094 33.333 0.00 0.00 37.61 1.94
159 160 8.410141 CCGCCTGGATTAATGTCTTAATTTTTA 58.590 33.333 0.00 0.00 37.61 1.52
160 161 9.450807 CGCCTGGATTAATGTCTTAATTTTTAG 57.549 33.333 0.00 0.00 37.61 1.85
190 191 7.581011 AATTGCATCCACGTTTATTTTCTTC 57.419 32.000 0.00 0.00 0.00 2.87
195 196 8.609176 TGCATCCACGTTTATTTTCTTCTATAC 58.391 33.333 0.00 0.00 0.00 1.47
196 197 8.609176 GCATCCACGTTTATTTTCTTCTATACA 58.391 33.333 0.00 0.00 0.00 2.29
197 198 9.916397 CATCCACGTTTATTTTCTTCTATACAC 57.084 33.333 0.00 0.00 0.00 2.90
198 199 9.661563 ATCCACGTTTATTTTCTTCTATACACA 57.338 29.630 0.00 0.00 0.00 3.72
199 200 9.146984 TCCACGTTTATTTTCTTCTATACACAG 57.853 33.333 0.00 0.00 0.00 3.66
200 201 9.146984 CCACGTTTATTTTCTTCTATACACAGA 57.853 33.333 0.00 0.00 0.00 3.41
223 224 2.231478 AGTAGGACTTGACGTGGTCATG 59.769 50.000 0.00 9.33 42.40 3.07
225 226 2.244695 AGGACTTGACGTGGTCATGTA 58.755 47.619 14.71 0.00 46.10 2.29
241 242 4.689345 GTCATGTATCCACGTTTATAGGCC 59.311 45.833 0.00 0.00 0.00 5.19
273 274 1.909700 TGGCATCTTTGAAGGGTCAC 58.090 50.000 0.00 0.00 31.90 3.67
274 284 0.804989 GGCATCTTTGAAGGGTCACG 59.195 55.000 0.00 0.00 31.90 4.35
345 359 0.173255 AAAAATCCAAGGCGCGATGG 59.827 50.000 20.63 20.63 38.09 3.51
348 362 2.349376 TCCAAGGCGCGATGGAAA 59.651 55.556 25.20 8.50 42.61 3.13
360 374 3.565516 GCGATGGAAAGAAAACCTTCAC 58.434 45.455 0.00 0.00 33.02 3.18
366 380 2.422276 AAGAAAACCTTCACGCATGC 57.578 45.000 7.91 7.91 33.64 4.06
367 381 1.317613 AGAAAACCTTCACGCATGCA 58.682 45.000 19.57 0.00 33.64 3.96
368 382 1.267806 AGAAAACCTTCACGCATGCAG 59.732 47.619 19.57 12.98 33.64 4.41
369 383 0.314935 AAAACCTTCACGCATGCAGG 59.685 50.000 19.57 18.59 44.27 4.85
370 384 2.146073 AAACCTTCACGCATGCAGGC 62.146 55.000 19.57 14.55 42.60 4.85
371 385 3.057548 CCTTCACGCATGCAGGCA 61.058 61.111 24.53 0.00 32.12 4.75
372 386 2.412323 CCTTCACGCATGCAGGCAT 61.412 57.895 24.53 4.65 32.12 4.40
427 441 3.256136 CCTCATACCTTCCTCCACGTATC 59.744 52.174 0.00 0.00 0.00 2.24
434 448 1.758936 TCCTCCACGTATCACGACAT 58.241 50.000 5.61 0.00 46.05 3.06
435 449 2.921821 TCCTCCACGTATCACGACATA 58.078 47.619 5.61 0.00 46.05 2.29
436 450 2.876550 TCCTCCACGTATCACGACATAG 59.123 50.000 5.61 0.00 46.05 2.23
438 452 3.811497 CCTCCACGTATCACGACATAGTA 59.189 47.826 5.61 0.00 46.05 1.82
441 455 4.271776 TCCACGTATCACGACATAGTAGTG 59.728 45.833 5.61 4.34 46.05 2.74
448 462 1.202533 ACGACATAGTAGTGCATGGCC 60.203 52.381 0.00 0.00 0.00 5.36
490 528 0.104487 ATGCAGCAGATGAGAGGTCG 59.896 55.000 0.00 0.00 0.00 4.79
498 536 1.740585 AGATGAGAGGTCGAGAACACG 59.259 52.381 0.00 0.00 0.00 4.49
632 686 1.741770 CCTTCCGTCCCTTTCAGCG 60.742 63.158 0.00 0.00 0.00 5.18
711 765 3.781307 CCGGCCGTCCTCATCCAA 61.781 66.667 26.12 0.00 0.00 3.53
712 766 2.202932 CGGCCGTCCTCATCCAAG 60.203 66.667 19.50 0.00 0.00 3.61
713 767 2.514824 GGCCGTCCTCATCCAAGC 60.515 66.667 0.00 0.00 0.00 4.01
714 768 2.514824 GCCGTCCTCATCCAAGCC 60.515 66.667 0.00 0.00 0.00 4.35
715 769 2.190578 CCGTCCTCATCCAAGCCC 59.809 66.667 0.00 0.00 0.00 5.19
716 770 2.669133 CCGTCCTCATCCAAGCCCA 61.669 63.158 0.00 0.00 0.00 5.36
717 771 1.450312 CGTCCTCATCCAAGCCCAC 60.450 63.158 0.00 0.00 0.00 4.61
718 772 1.450312 GTCCTCATCCAAGCCCACG 60.450 63.158 0.00 0.00 0.00 4.94
906 980 1.746991 CCAGCCGCCTTTCTCTTCC 60.747 63.158 0.00 0.00 0.00 3.46
1023 1105 1.675641 GACGGCAATGGTGAAGGCT 60.676 57.895 0.00 0.00 0.00 4.58
1250 1344 2.815647 CGGTGCGCCTTCTCTTCC 60.816 66.667 15.69 0.00 0.00 3.46
1260 1354 2.666317 CCTTCTCTTCCTCCTCTCTCC 58.334 57.143 0.00 0.00 0.00 3.71
1261 1355 2.666317 CTTCTCTTCCTCCTCTCTCCC 58.334 57.143 0.00 0.00 0.00 4.30
1262 1356 0.930726 TCTCTTCCTCCTCTCTCCCC 59.069 60.000 0.00 0.00 0.00 4.81
1305 1399 0.254462 CCTCCTTCCTCCTTCTTGGC 59.746 60.000 0.00 0.00 35.26 4.52
1306 1400 1.284313 CTCCTTCCTCCTTCTTGGCT 58.716 55.000 0.00 0.00 35.26 4.75
1307 1401 1.632920 CTCCTTCCTCCTTCTTGGCTT 59.367 52.381 0.00 0.00 35.26 4.35
1308 1402 1.630878 TCCTTCCTCCTTCTTGGCTTC 59.369 52.381 0.00 0.00 35.26 3.86
1309 1403 1.340502 CCTTCCTCCTTCTTGGCTTCC 60.341 57.143 0.00 0.00 35.26 3.46
1310 1404 1.632920 CTTCCTCCTTCTTGGCTTCCT 59.367 52.381 0.00 0.00 35.26 3.36
1311 1405 1.280457 TCCTCCTTCTTGGCTTCCTC 58.720 55.000 0.00 0.00 35.26 3.71
1312 1406 0.107945 CCTCCTTCTTGGCTTCCTCG 60.108 60.000 0.00 0.00 35.26 4.63
1313 1407 0.610687 CTCCTTCTTGGCTTCCTCGT 59.389 55.000 0.00 0.00 35.26 4.18
1314 1408 1.002544 CTCCTTCTTGGCTTCCTCGTT 59.997 52.381 0.00 0.00 35.26 3.85
1315 1409 1.002087 TCCTTCTTGGCTTCCTCGTTC 59.998 52.381 0.00 0.00 35.26 3.95
1316 1410 1.002544 CCTTCTTGGCTTCCTCGTTCT 59.997 52.381 0.00 0.00 0.00 3.01
1317 1411 2.551071 CCTTCTTGGCTTCCTCGTTCTT 60.551 50.000 0.00 0.00 0.00 2.52
1318 1412 2.169832 TCTTGGCTTCCTCGTTCTTG 57.830 50.000 0.00 0.00 0.00 3.02
1319 1413 0.519077 CTTGGCTTCCTCGTTCTTGC 59.481 55.000 0.00 0.00 0.00 4.01
1320 1414 0.108585 TTGGCTTCCTCGTTCTTGCT 59.891 50.000 0.00 0.00 0.00 3.91
1321 1415 0.320771 TGGCTTCCTCGTTCTTGCTC 60.321 55.000 0.00 0.00 0.00 4.26
1322 1416 1.021920 GGCTTCCTCGTTCTTGCTCC 61.022 60.000 0.00 0.00 0.00 4.70
1327 1421 1.273606 TCCTCGTTCTTGCTCCTTCAG 59.726 52.381 0.00 0.00 0.00 3.02
1532 1640 0.672401 GGACGGTCGGCATCAAGAAA 60.672 55.000 1.43 0.00 0.00 2.52
1664 1772 1.078637 GGTAACCCCAGCGTCTTCC 60.079 63.158 0.00 0.00 0.00 3.46
1665 1773 1.551019 GGTAACCCCAGCGTCTTCCT 61.551 60.000 0.00 0.00 0.00 3.36
1666 1774 0.323957 GTAACCCCAGCGTCTTCCTT 59.676 55.000 0.00 0.00 0.00 3.36
1667 1775 1.061546 TAACCCCAGCGTCTTCCTTT 58.938 50.000 0.00 0.00 0.00 3.11
1677 1785 2.854805 GCGTCTTCCTTTCAGTTTGCAC 60.855 50.000 0.00 0.00 0.00 4.57
1701 1809 4.284829 TGCTCACCAACAATACTGATCA 57.715 40.909 0.00 0.00 0.00 2.92
1753 1861 2.693074 TCTCTGTGATGTGCGGCTATTA 59.307 45.455 0.00 0.00 0.00 0.98
1918 2026 2.179517 CAGACGCACGACTCCTCC 59.820 66.667 0.00 0.00 0.00 4.30
2297 2417 5.497464 TGATTCTGAAGATGTGGTGGTAA 57.503 39.130 0.00 0.00 0.00 2.85
2402 2530 8.974060 AATCTCAAGTCTAAACACCAAACTTA 57.026 30.769 0.00 0.00 0.00 2.24
2427 2566 4.779489 TCTTCTGACCCTTGATCAATCTGA 59.221 41.667 8.96 10.30 0.00 3.27
2428 2567 5.249163 TCTTCTGACCCTTGATCAATCTGAA 59.751 40.000 19.93 19.93 0.00 3.02
2429 2568 5.503634 TCTGACCCTTGATCAATCTGAAA 57.496 39.130 8.96 0.00 0.00 2.69
2430 2569 5.248640 TCTGACCCTTGATCAATCTGAAAC 58.751 41.667 8.96 0.00 0.00 2.78
2431 2570 4.984295 TGACCCTTGATCAATCTGAAACA 58.016 39.130 8.96 1.31 0.00 2.83
2432 2571 5.384336 TGACCCTTGATCAATCTGAAACAA 58.616 37.500 8.96 0.00 0.00 2.83
2433 2572 5.832595 TGACCCTTGATCAATCTGAAACAAA 59.167 36.000 8.96 0.00 30.85 2.83
2434 2573 6.494491 TGACCCTTGATCAATCTGAAACAAAT 59.506 34.615 8.96 0.00 30.85 2.32
2435 2574 6.928520 ACCCTTGATCAATCTGAAACAAATC 58.071 36.000 8.96 0.00 30.85 2.17
2436 2575 6.723052 ACCCTTGATCAATCTGAAACAAATCT 59.277 34.615 8.96 0.00 30.85 2.40
2437 2576 7.033791 CCCTTGATCAATCTGAAACAAATCTG 58.966 38.462 8.96 0.00 30.85 2.90
2443 2582 8.807667 ATCAATCTGAAACAAATCTGAAACAC 57.192 30.769 0.00 0.00 32.11 3.32
2459 2598 1.874129 ACACATATTCCCTCCGTCCA 58.126 50.000 0.00 0.00 0.00 4.02
2502 2672 9.804758 ATGTATCTAGACAGTTTTAGTGTTAGC 57.195 33.333 0.00 0.00 30.64 3.09
2504 2674 9.291664 GTATCTAGACAGTTTTAGTGTTAGCTG 57.708 37.037 0.00 0.00 30.64 4.24
2505 2675 7.286215 TCTAGACAGTTTTAGTGTTAGCTGT 57.714 36.000 0.00 0.00 39.51 4.40
2510 2680 9.021807 AGACAGTTTTAGTGTTAGCTGTATCTA 57.978 33.333 0.00 0.00 37.32 1.98
2511 2681 8.983307 ACAGTTTTAGTGTTAGCTGTATCTAC 57.017 34.615 0.00 0.00 35.71 2.59
2513 2683 9.419297 CAGTTTTAGTGTTAGCTGTATCTACAA 57.581 33.333 0.00 0.00 35.50 2.41
2514 2684 9.991906 AGTTTTAGTGTTAGCTGTATCTACAAA 57.008 29.630 0.00 0.00 35.50 2.83
2526 2696 9.593134 AGCTGTATCTACAAAAATCTAAGACAG 57.407 33.333 0.00 0.00 35.50 3.51
2657 2828 5.186198 ACAGTGGGTTCAGATATTAACAGC 58.814 41.667 0.00 0.00 0.00 4.40
2769 2940 4.183865 TGCACTATGTTAGTCTGCATCAC 58.816 43.478 0.00 0.00 36.76 3.06
2834 3005 2.874014 TGCCATGAAATTGACAGTGGA 58.126 42.857 0.00 0.00 0.00 4.02
2884 3055 4.202315 TGGCTGTAGCTTGTACAGAGAAAA 60.202 41.667 17.47 0.00 45.69 2.29
3011 3183 9.964303 CATAACAGAGATCAGGATATATGTAGC 57.036 37.037 4.80 0.00 33.92 3.58
3116 3288 6.010675 CGAAGATAAATTTTTGACGCGTACA 58.989 36.000 13.97 9.74 0.00 2.90
3120 3292 9.997482 AAGATAAATTTTTGACGCGTACAATAT 57.003 25.926 13.97 11.90 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.822334 TGAACGAAGGAAGTACATATGTCATTT 59.178 33.333 12.68 5.41 0.00 2.32
1 2 7.327975 TGAACGAAGGAAGTACATATGTCATT 58.672 34.615 12.68 8.38 0.00 2.57
2 3 6.873997 TGAACGAAGGAAGTACATATGTCAT 58.126 36.000 12.68 0.00 0.00 3.06
3 4 6.275494 TGAACGAAGGAAGTACATATGTCA 57.725 37.500 12.68 0.00 0.00 3.58
4 5 6.978659 TCATGAACGAAGGAAGTACATATGTC 59.021 38.462 12.68 4.47 0.00 3.06
5 6 6.873997 TCATGAACGAAGGAAGTACATATGT 58.126 36.000 13.93 13.93 0.00 2.29
6 7 7.770801 TTCATGAACGAAGGAAGTACATATG 57.229 36.000 3.38 0.00 0.00 1.78
10 11 9.529325 CTTATATTCATGAACGAAGGAAGTACA 57.471 33.333 11.07 0.00 0.00 2.90
11 12 9.745880 TCTTATATTCATGAACGAAGGAAGTAC 57.254 33.333 11.07 0.00 0.00 2.73
13 14 9.265901 CATCTTATATTCATGAACGAAGGAAGT 57.734 33.333 11.07 0.00 0.00 3.01
14 15 9.265901 ACATCTTATATTCATGAACGAAGGAAG 57.734 33.333 11.07 8.74 0.00 3.46
15 16 9.613428 AACATCTTATATTCATGAACGAAGGAA 57.387 29.630 11.07 0.80 0.00 3.36
16 17 9.045223 CAACATCTTATATTCATGAACGAAGGA 57.955 33.333 11.07 7.42 0.00 3.36
17 18 8.830580 ACAACATCTTATATTCATGAACGAAGG 58.169 33.333 11.07 5.64 0.00 3.46
53 54 9.836864 AGCATGTCTATGTACATTTAATTCAGA 57.163 29.630 14.77 5.91 38.01 3.27
60 61 9.884636 ACACTAAAGCATGTCTATGTACATTTA 57.115 29.630 14.77 3.26 38.01 1.40
61 62 8.792830 ACACTAAAGCATGTCTATGTACATTT 57.207 30.769 14.77 2.16 38.01 2.32
63 64 9.481340 CATACACTAAAGCATGTCTATGTACAT 57.519 33.333 13.93 13.93 40.75 2.29
64 65 8.474831 ACATACACTAAAGCATGTCTATGTACA 58.525 33.333 0.00 0.00 36.65 2.90
65 66 8.755941 CACATACACTAAAGCATGTCTATGTAC 58.244 37.037 0.00 0.00 36.65 2.90
66 67 8.474831 ACACATACACTAAAGCATGTCTATGTA 58.525 33.333 0.00 0.00 36.65 2.29
67 68 7.331026 ACACATACACTAAAGCATGTCTATGT 58.669 34.615 0.00 0.00 36.65 2.29
68 69 7.776933 ACACATACACTAAAGCATGTCTATG 57.223 36.000 0.00 0.00 37.36 2.23
69 70 9.314321 GTAACACATACACTAAAGCATGTCTAT 57.686 33.333 0.00 0.00 34.46 1.98
70 71 8.528643 AGTAACACATACACTAAAGCATGTCTA 58.471 33.333 0.00 0.00 36.94 2.59
71 72 7.386851 AGTAACACATACACTAAAGCATGTCT 58.613 34.615 0.00 0.00 36.94 3.41
72 73 7.462856 CGAGTAACACATACACTAAAGCATGTC 60.463 40.741 0.00 0.00 36.94 3.06
73 74 6.310467 CGAGTAACACATACACTAAAGCATGT 59.690 38.462 0.00 0.00 36.94 3.21
74 75 6.310467 ACGAGTAACACATACACTAAAGCATG 59.690 38.462 0.00 0.00 36.94 4.06
75 76 6.395629 ACGAGTAACACATACACTAAAGCAT 58.604 36.000 0.00 0.00 36.94 3.79
76 77 5.775686 ACGAGTAACACATACACTAAAGCA 58.224 37.500 0.00 0.00 36.94 3.91
77 78 6.701432 AACGAGTAACACATACACTAAAGC 57.299 37.500 0.00 0.00 36.94 3.51
78 79 8.289440 TGAAACGAGTAACACATACACTAAAG 57.711 34.615 0.00 0.00 36.94 1.85
79 80 8.645730 TTGAAACGAGTAACACATACACTAAA 57.354 30.769 0.00 0.00 36.94 1.85
80 81 8.821147 ATTGAAACGAGTAACACATACACTAA 57.179 30.769 0.00 0.00 36.94 2.24
82 83 8.997621 ATATTGAAACGAGTAACACATACACT 57.002 30.769 0.00 0.00 36.94 3.55
114 115 8.861086 CCAGGCGGTCTATATTAATGTCTATAT 58.139 37.037 0.00 0.00 0.00 0.86
115 116 8.057011 TCCAGGCGGTCTATATTAATGTCTATA 58.943 37.037 0.00 0.00 0.00 1.31
116 117 6.895756 TCCAGGCGGTCTATATTAATGTCTAT 59.104 38.462 0.00 0.00 0.00 1.98
117 118 6.250711 TCCAGGCGGTCTATATTAATGTCTA 58.749 40.000 0.00 0.00 0.00 2.59
118 119 5.084519 TCCAGGCGGTCTATATTAATGTCT 58.915 41.667 0.00 0.00 0.00 3.41
119 120 5.401531 TCCAGGCGGTCTATATTAATGTC 57.598 43.478 0.00 0.00 0.00 3.06
120 121 6.374417 AATCCAGGCGGTCTATATTAATGT 57.626 37.500 0.00 0.00 0.00 2.71
121 122 8.830580 CATTAATCCAGGCGGTCTATATTAATG 58.169 37.037 21.65 21.65 39.72 1.90
122 123 8.548877 ACATTAATCCAGGCGGTCTATATTAAT 58.451 33.333 12.20 12.20 35.06 1.40
123 124 7.913789 ACATTAATCCAGGCGGTCTATATTAA 58.086 34.615 9.58 9.58 31.55 1.40
124 125 7.399191 AGACATTAATCCAGGCGGTCTATATTA 59.601 37.037 0.00 0.00 32.80 0.98
125 126 6.213600 AGACATTAATCCAGGCGGTCTATATT 59.786 38.462 0.00 0.00 32.80 1.28
126 127 5.721960 AGACATTAATCCAGGCGGTCTATAT 59.278 40.000 0.00 0.00 32.80 0.86
127 128 5.084519 AGACATTAATCCAGGCGGTCTATA 58.915 41.667 0.00 0.00 32.80 1.31
128 129 3.904339 AGACATTAATCCAGGCGGTCTAT 59.096 43.478 0.00 0.00 32.80 1.98
129 130 3.305720 AGACATTAATCCAGGCGGTCTA 58.694 45.455 0.00 0.00 32.80 2.59
130 131 2.119495 AGACATTAATCCAGGCGGTCT 58.881 47.619 0.00 0.00 0.00 3.85
131 132 2.622064 AGACATTAATCCAGGCGGTC 57.378 50.000 0.00 0.00 0.00 4.79
132 133 4.497291 TTAAGACATTAATCCAGGCGGT 57.503 40.909 0.00 0.00 0.00 5.68
133 134 6.391227 AAATTAAGACATTAATCCAGGCGG 57.609 37.500 0.00 0.00 40.05 6.13
134 135 9.450807 CTAAAAATTAAGACATTAATCCAGGCG 57.549 33.333 0.00 0.00 40.05 5.52
163 164 8.376889 AGAAAATAAACGTGGATGCAATTTTT 57.623 26.923 7.65 2.34 0.00 1.94
164 165 7.961325 AGAAAATAAACGTGGATGCAATTTT 57.039 28.000 6.33 6.33 0.00 1.82
165 166 7.872483 AGAAGAAAATAAACGTGGATGCAATTT 59.128 29.630 0.00 0.00 0.00 1.82
166 167 7.378181 AGAAGAAAATAAACGTGGATGCAATT 58.622 30.769 0.00 0.00 0.00 2.32
167 168 6.924111 AGAAGAAAATAAACGTGGATGCAAT 58.076 32.000 0.00 0.00 0.00 3.56
168 169 6.325919 AGAAGAAAATAAACGTGGATGCAA 57.674 33.333 0.00 0.00 0.00 4.08
169 170 5.957842 AGAAGAAAATAAACGTGGATGCA 57.042 34.783 0.00 0.00 0.00 3.96
170 171 8.609176 TGTATAGAAGAAAATAAACGTGGATGC 58.391 33.333 0.00 0.00 0.00 3.91
171 172 9.916397 GTGTATAGAAGAAAATAAACGTGGATG 57.084 33.333 0.00 0.00 0.00 3.51
182 183 9.702253 TCCTACTCTCTGTGTATAGAAGAAAAT 57.298 33.333 0.00 0.00 0.00 1.82
190 191 6.018588 CGTCAAGTCCTACTCTCTGTGTATAG 60.019 46.154 0.00 0.00 0.00 1.31
195 196 2.814919 ACGTCAAGTCCTACTCTCTGTG 59.185 50.000 0.00 0.00 0.00 3.66
196 197 2.814919 CACGTCAAGTCCTACTCTCTGT 59.185 50.000 0.00 0.00 0.00 3.41
197 198 2.162608 CCACGTCAAGTCCTACTCTCTG 59.837 54.545 0.00 0.00 0.00 3.35
198 199 2.224818 ACCACGTCAAGTCCTACTCTCT 60.225 50.000 0.00 0.00 0.00 3.10
199 200 2.161030 ACCACGTCAAGTCCTACTCTC 58.839 52.381 0.00 0.00 0.00 3.20
200 201 2.161030 GACCACGTCAAGTCCTACTCT 58.839 52.381 0.00 0.00 32.09 3.24
201 202 1.884579 TGACCACGTCAAGTCCTACTC 59.115 52.381 7.28 0.00 39.78 2.59
202 203 1.991121 TGACCACGTCAAGTCCTACT 58.009 50.000 7.28 0.00 39.78 2.57
203 204 2.029290 ACATGACCACGTCAAGTCCTAC 60.029 50.000 0.00 0.00 45.96 3.18
223 224 3.648339 TCGGCCTATAAACGTGGATAC 57.352 47.619 0.00 0.00 0.00 2.24
225 226 3.118519 AGTTTCGGCCTATAAACGTGGAT 60.119 43.478 15.39 0.00 39.90 3.41
241 242 6.148948 TCAAAGATGCCATTGTTTAGTTTCG 58.851 36.000 0.00 0.00 0.00 3.46
273 274 2.721603 CACGCTAAGCTAGAATGCTACG 59.278 50.000 0.00 0.00 43.24 3.51
274 284 3.966154 TCACGCTAAGCTAGAATGCTAC 58.034 45.455 0.00 0.00 43.24 3.58
345 359 2.726241 GCATGCGTGAAGGTTTTCTTTC 59.274 45.455 10.93 0.00 35.50 2.62
346 360 2.100584 TGCATGCGTGAAGGTTTTCTTT 59.899 40.909 14.09 0.00 35.50 2.52
347 361 1.680735 TGCATGCGTGAAGGTTTTCTT 59.319 42.857 14.09 0.00 38.65 2.52
348 362 1.267806 CTGCATGCGTGAAGGTTTTCT 59.732 47.619 14.09 0.00 34.31 2.52
380 394 4.218478 GTTACGACCCGCGCATGC 62.218 66.667 7.91 7.91 46.04 4.06
427 441 1.860950 GCCATGCACTACTATGTCGTG 59.139 52.381 0.00 0.00 33.31 4.35
434 448 2.504032 GGCGGCCATGCACTACTA 59.496 61.111 15.62 0.00 36.28 1.82
435 449 4.838152 CGGCGGCCATGCACTACT 62.838 66.667 20.71 0.00 36.28 2.57
462 476 1.929806 ATCTGCTGCATTGCACCACG 61.930 55.000 7.38 0.00 38.12 4.94
473 511 0.248990 CTCGACCTCTCATCTGCTGC 60.249 60.000 0.00 0.00 0.00 5.25
474 512 1.387539 TCTCGACCTCTCATCTGCTG 58.612 55.000 0.00 0.00 0.00 4.41
475 513 1.748493 GTTCTCGACCTCTCATCTGCT 59.252 52.381 0.00 0.00 0.00 4.24
490 528 1.079750 GCTGGTCCTCCGTGTTCTC 60.080 63.158 0.00 0.00 36.30 2.87
560 601 2.762535 AAATATATCCCCGCGACCAG 57.237 50.000 8.23 0.00 0.00 4.00
648 702 1.204312 GCGGCGACAAGAGTTTGAC 59.796 57.895 12.98 0.00 37.73 3.18
694 748 3.740128 CTTGGATGAGGACGGCCGG 62.740 68.421 31.76 11.88 39.96 6.13
845 906 2.169561 CCTGGAGCCCTTCTCTTTAGTC 59.830 54.545 0.00 0.00 41.60 2.59
848 909 2.188817 GACCTGGAGCCCTTCTCTTTA 58.811 52.381 0.00 0.00 41.60 1.85
857 918 4.741239 TCCTGGGACCTGGAGCCC 62.741 72.222 18.43 18.43 44.93 5.19
939 1013 0.178964 CCACCTTGGAGAAAAGCCCA 60.179 55.000 0.00 0.00 40.96 5.36
1110 1204 3.618750 TCGTCCGTGGGGTGGAAC 61.619 66.667 0.00 0.00 37.23 3.62
1250 1344 2.018086 AGGGGAGGGGAGAGAGGAG 61.018 68.421 0.00 0.00 0.00 3.69
1260 1354 1.443729 AAAAACAGGGGAGGGGAGGG 61.444 60.000 0.00 0.00 0.00 4.30
1261 1355 2.173852 AAAAACAGGGGAGGGGAGG 58.826 57.895 0.00 0.00 0.00 4.30
1305 1399 2.289072 TGAAGGAGCAAGAACGAGGAAG 60.289 50.000 0.00 0.00 0.00 3.46
1306 1400 1.691976 TGAAGGAGCAAGAACGAGGAA 59.308 47.619 0.00 0.00 0.00 3.36
1307 1401 1.273606 CTGAAGGAGCAAGAACGAGGA 59.726 52.381 0.00 0.00 0.00 3.71
1308 1402 1.001406 ACTGAAGGAGCAAGAACGAGG 59.999 52.381 0.00 0.00 0.00 4.63
1309 1403 2.064762 CACTGAAGGAGCAAGAACGAG 58.935 52.381 0.00 0.00 0.00 4.18
1310 1404 1.412710 ACACTGAAGGAGCAAGAACGA 59.587 47.619 0.00 0.00 0.00 3.85
1311 1405 1.528586 CACACTGAAGGAGCAAGAACG 59.471 52.381 0.00 0.00 0.00 3.95
1312 1406 2.289002 CACACACTGAAGGAGCAAGAAC 59.711 50.000 0.00 0.00 0.00 3.01
1313 1407 2.564771 CACACACTGAAGGAGCAAGAA 58.435 47.619 0.00 0.00 0.00 2.52
1314 1408 1.811558 GCACACACTGAAGGAGCAAGA 60.812 52.381 0.00 0.00 0.00 3.02
1315 1409 0.590195 GCACACACTGAAGGAGCAAG 59.410 55.000 0.00 0.00 0.00 4.01
1316 1410 0.181114 AGCACACACTGAAGGAGCAA 59.819 50.000 0.00 0.00 0.00 3.91
1317 1411 0.533531 CAGCACACACTGAAGGAGCA 60.534 55.000 0.00 0.00 40.25 4.26
1318 1412 0.533755 ACAGCACACACTGAAGGAGC 60.534 55.000 0.00 0.00 40.25 4.70
1319 1413 1.224075 CACAGCACACACTGAAGGAG 58.776 55.000 0.00 0.00 40.25 3.69
1320 1414 0.815213 GCACAGCACACACTGAAGGA 60.815 55.000 0.00 0.00 40.25 3.36
1321 1415 0.816825 AGCACAGCACACACTGAAGG 60.817 55.000 0.00 0.00 40.25 3.46
1322 1416 0.306840 CAGCACAGCACACACTGAAG 59.693 55.000 0.00 0.00 40.25 3.02
1327 1421 1.097547 AAGGTCAGCACAGCACACAC 61.098 55.000 0.00 0.00 0.00 3.82
1532 1640 1.707239 CGGAGTAGAAGACGAGCGCT 61.707 60.000 11.27 11.27 0.00 5.92
1677 1785 5.181811 TGATCAGTATTGTTGGTGAGCAAAG 59.818 40.000 0.00 0.00 32.66 2.77
1701 1809 8.811017 AGGATCAGTATTCAGTATCGATTGATT 58.189 33.333 1.71 1.52 35.99 2.57
1753 1861 1.003355 CACCCATTCGTCCAGCTGT 60.003 57.895 13.81 0.00 0.00 4.40
1918 2026 2.352915 GAGGCGCTGTCGATCTCG 60.353 66.667 7.64 0.00 38.10 4.04
1951 2059 1.594194 GCGCCATGTCCATGAAACCA 61.594 55.000 8.82 0.00 41.20 3.67
1954 2062 1.936436 GCTGCGCCATGTCCATGAAA 61.936 55.000 4.18 0.00 41.20 2.69
1973 2081 2.513204 CACCATCCTCGCCTGCTG 60.513 66.667 0.00 0.00 0.00 4.41
1974 2082 2.685017 TCACCATCCTCGCCTGCT 60.685 61.111 0.00 0.00 0.00 4.24
1979 2087 2.501223 TTCACCGTCACCATCCTCGC 62.501 60.000 0.00 0.00 0.00 5.03
2297 2417 7.611855 ACCAAAGAATAAATACTGCTACAAGCT 59.388 33.333 0.03 0.00 42.97 3.74
2402 2530 6.069789 TCAGATTGATCAAGGGTCAGAAGAAT 60.070 38.462 14.54 0.00 0.00 2.40
2427 2566 8.193953 AGGGAATATGTGTTTCAGATTTGTTT 57.806 30.769 0.00 0.00 37.98 2.83
2428 2567 7.093771 GGAGGGAATATGTGTTTCAGATTTGTT 60.094 37.037 0.00 0.00 37.98 2.83
2429 2568 6.378280 GGAGGGAATATGTGTTTCAGATTTGT 59.622 38.462 0.00 0.00 37.98 2.83
2430 2569 6.458751 CGGAGGGAATATGTGTTTCAGATTTG 60.459 42.308 0.00 0.00 37.98 2.32
2431 2570 5.590259 CGGAGGGAATATGTGTTTCAGATTT 59.410 40.000 0.00 0.00 37.98 2.17
2432 2571 5.126067 CGGAGGGAATATGTGTTTCAGATT 58.874 41.667 0.00 0.00 40.15 2.40
2433 2572 4.164221 ACGGAGGGAATATGTGTTTCAGAT 59.836 41.667 0.00 0.00 0.00 2.90
2434 2573 3.517901 ACGGAGGGAATATGTGTTTCAGA 59.482 43.478 0.00 0.00 0.00 3.27
2435 2574 3.871594 GACGGAGGGAATATGTGTTTCAG 59.128 47.826 0.00 0.00 0.00 3.02
2436 2575 3.370103 GGACGGAGGGAATATGTGTTTCA 60.370 47.826 0.00 0.00 0.00 2.69
2437 2576 3.203716 GGACGGAGGGAATATGTGTTTC 58.796 50.000 0.00 0.00 0.00 2.78
2443 2582 4.891992 AATACTGGACGGAGGGAATATG 57.108 45.455 0.00 0.00 0.00 1.78
2447 2586 3.393426 AGTAATACTGGACGGAGGGAA 57.607 47.619 0.00 0.00 0.00 3.97
2502 2672 9.877178 ACCTGTCTTAGATTTTTGTAGATACAG 57.123 33.333 0.00 0.00 37.52 2.74
2510 2680 8.585018 CCCAAATTACCTGTCTTAGATTTTTGT 58.415 33.333 0.00 0.00 0.00 2.83
2511 2681 8.802267 TCCCAAATTACCTGTCTTAGATTTTTG 58.198 33.333 0.00 0.00 0.00 2.44
2513 2683 7.120726 CGTCCCAAATTACCTGTCTTAGATTTT 59.879 37.037 0.00 0.00 0.00 1.82
2514 2684 6.598064 CGTCCCAAATTACCTGTCTTAGATTT 59.402 38.462 0.00 0.00 0.00 2.17
2515 2685 6.113411 CGTCCCAAATTACCTGTCTTAGATT 58.887 40.000 0.00 0.00 0.00 2.40
2517 2687 4.081309 CCGTCCCAAATTACCTGTCTTAGA 60.081 45.833 0.00 0.00 0.00 2.10
2518 2688 4.081309 TCCGTCCCAAATTACCTGTCTTAG 60.081 45.833 0.00 0.00 0.00 2.18
2519 2689 3.839490 TCCGTCCCAAATTACCTGTCTTA 59.161 43.478 0.00 0.00 0.00 2.10
2520 2690 2.640826 TCCGTCCCAAATTACCTGTCTT 59.359 45.455 0.00 0.00 0.00 3.01
2521 2691 2.236395 CTCCGTCCCAAATTACCTGTCT 59.764 50.000 0.00 0.00 0.00 3.41
2522 2692 2.629051 CTCCGTCCCAAATTACCTGTC 58.371 52.381 0.00 0.00 0.00 3.51
2526 2696 3.632643 TTACCTCCGTCCCAAATTACC 57.367 47.619 0.00 0.00 0.00 2.85
2605 2776 9.030301 CCAAATTCGGATAAACACCAAATATTC 57.970 33.333 0.00 0.00 0.00 1.75
2657 2828 7.929159 TGTATGCACTGAATGTTACCATTATG 58.071 34.615 0.00 0.00 41.37 1.90
2769 2940 3.969352 GTGTCGCTAACTCATATGACTCG 59.031 47.826 0.00 1.70 0.00 4.18
2807 2978 6.695713 CACTGTCAATTTCATGGCATCTTATG 59.304 38.462 0.00 0.00 33.82 1.90
3011 3183 2.205074 AGCTTGTTCTGTCAGTTGTCG 58.795 47.619 0.00 0.00 0.00 4.35
3116 3288 9.234384 GATTCGATCATACCGACGATAAATATT 57.766 33.333 0.00 0.00 35.61 1.28
3120 3292 5.048573 TGGATTCGATCATACCGACGATAAA 60.049 40.000 0.00 0.00 35.61 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.