Multiple sequence alignment - TraesCS3A01G339200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G339200 chr3A 100.000 3269 0 0 1 3269 586410661 586413929 0.000000e+00 6037.0
1 TraesCS3A01G339200 chr3A 96.330 109 4 0 2813 2921 571330132 571330240 2.590000e-41 180.0
2 TraesCS3A01G339200 chr3A 100.000 28 0 0 2750 2777 586413382 586413409 6.000000e-03 52.8
3 TraesCS3A01G339200 chr3A 100.000 28 0 0 2722 2749 586413410 586413437 6.000000e-03 52.8
4 TraesCS3A01G339200 chr3D 88.979 2468 129 59 158 2557 445025839 445028231 0.000000e+00 2918.0
5 TraesCS3A01G339200 chr3D 95.495 111 5 0 2810 2920 572131113 572131003 9.320000e-41 178.0
6 TraesCS3A01G339200 chr3B 93.307 1031 44 13 1480 2499 583382214 583383230 0.000000e+00 1498.0
7 TraesCS3A01G339200 chr3B 86.639 958 66 33 142 1063 583380857 583381788 0.000000e+00 1003.0
8 TraesCS3A01G339200 chr3B 97.409 386 9 1 1104 1488 583381793 583382178 0.000000e+00 656.0
9 TraesCS3A01G339200 chr3B 85.787 197 15 3 3086 3269 583383582 583383778 2.570000e-46 196.0
10 TraesCS3A01G339200 chr6A 95.041 121 4 2 2806 2924 477910762 477910882 4.310000e-44 189.0
11 TraesCS3A01G339200 chr5A 96.364 110 4 0 2814 2923 16499955 16500064 7.210000e-42 182.0
12 TraesCS3A01G339200 chr1B 95.614 114 4 1 2809 2921 651523585 651523698 7.210000e-42 182.0
13 TraesCS3A01G339200 chr1B 100.000 32 0 0 2118 2149 397135029 397135060 3.520000e-05 60.2
14 TraesCS3A01G339200 chr4B 95.536 112 5 0 2813 2924 79997158 79997269 2.590000e-41 180.0
15 TraesCS3A01G339200 chr1A 95.575 113 4 1 2810 2921 294516631 294516519 2.590000e-41 180.0
16 TraesCS3A01G339200 chrUn 92.623 122 5 4 2801 2920 352766864 352766983 4.340000e-39 172.0
17 TraesCS3A01G339200 chr7A 92.623 122 5 4 2801 2920 735739790 735739909 4.340000e-39 172.0
18 TraesCS3A01G339200 chr6D 100.000 32 0 0 2118 2149 120260513 120260544 3.520000e-05 60.2
19 TraesCS3A01G339200 chr4D 100.000 32 0 0 2118 2149 45987147 45987178 3.520000e-05 60.2
20 TraesCS3A01G339200 chr4D 100.000 32 0 0 2118 2149 169850065 169850096 3.520000e-05 60.2
21 TraesCS3A01G339200 chr4D 100.000 32 0 0 2118 2149 220132694 220132725 3.520000e-05 60.2
22 TraesCS3A01G339200 chr4D 100.000 32 0 0 2118 2149 220148066 220148097 3.520000e-05 60.2
23 TraesCS3A01G339200 chr4D 100.000 32 0 0 2118 2149 310825946 310825915 3.520000e-05 60.2
24 TraesCS3A01G339200 chr4D 96.875 32 1 0 1288 1319 13237056 13237087 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G339200 chr3A 586410661 586413929 3268 False 2047.533333 6037 100.0000 1 3269 3 chr3A.!!$F2 3268
1 TraesCS3A01G339200 chr3D 445025839 445028231 2392 False 2918.000000 2918 88.9790 158 2557 1 chr3D.!!$F1 2399
2 TraesCS3A01G339200 chr3B 583380857 583383778 2921 False 838.250000 1498 90.7855 142 3269 4 chr3B.!!$F1 3127

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.107703 TTGTCCCGTGATCTGGATGC 60.108 55.0 6.18 0.0 32.20 3.91 F
218 219 0.180171 TGGGCCACCGAATACAGATG 59.820 55.0 0.00 0.0 40.75 2.90 F
1736 1839 0.381801 AACTTCCTGTGTTTGCTGCG 59.618 50.0 0.00 0.0 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1816 1.406539 AGCAAACACAGGAAGTTGCAG 59.593 47.619 9.62 0.00 0.0 4.41 R
1804 1907 1.825090 TGTCCTGCATTGACACATCC 58.175 50.000 13.51 0.00 37.8 3.51 R
2777 2885 0.027979 CCATTACCTGTGCGCGAATG 59.972 55.000 12.10 8.97 0.0 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.795905 TTCCTAGGGTTTCGCCGT 58.204 55.556 9.46 0.00 38.44 5.68
18 19 2.060370 TTCCTAGGGTTTCGCCGTT 58.940 52.632 9.46 0.00 38.44 4.44
19 20 1.265236 TTCCTAGGGTTTCGCCGTTA 58.735 50.000 9.46 0.00 38.44 3.18
20 21 1.488390 TCCTAGGGTTTCGCCGTTAT 58.512 50.000 9.46 0.00 38.44 1.89
21 22 1.137479 TCCTAGGGTTTCGCCGTTATG 59.863 52.381 9.46 0.00 38.44 1.90
22 23 1.578583 CTAGGGTTTCGCCGTTATGG 58.421 55.000 0.00 0.00 42.50 2.74
23 24 0.178533 TAGGGTTTCGCCGTTATGGG 59.821 55.000 0.00 0.00 38.63 4.00
24 25 1.377594 GGGTTTCGCCGTTATGGGT 60.378 57.895 0.00 0.00 38.63 4.51
25 26 1.650314 GGGTTTCGCCGTTATGGGTG 61.650 60.000 0.00 0.00 38.63 4.61
26 27 0.956902 GGTTTCGCCGTTATGGGTGT 60.957 55.000 0.00 0.00 38.71 4.16
27 28 0.876399 GTTTCGCCGTTATGGGTGTT 59.124 50.000 0.00 0.00 38.71 3.32
28 29 1.135888 GTTTCGCCGTTATGGGTGTTC 60.136 52.381 0.00 0.00 38.71 3.18
29 30 1.015085 TTCGCCGTTATGGGTGTTCG 61.015 55.000 0.00 0.00 38.71 3.95
30 31 1.446445 CGCCGTTATGGGTGTTCGA 60.446 57.895 0.00 0.00 38.63 3.71
31 32 1.418342 CGCCGTTATGGGTGTTCGAG 61.418 60.000 0.00 0.00 38.63 4.04
32 33 0.108520 GCCGTTATGGGTGTTCGAGA 60.109 55.000 0.00 0.00 38.63 4.04
33 34 1.472728 GCCGTTATGGGTGTTCGAGAT 60.473 52.381 0.00 0.00 38.63 2.75
34 35 2.201732 CCGTTATGGGTGTTCGAGATG 58.798 52.381 0.00 0.00 0.00 2.90
35 36 2.418197 CCGTTATGGGTGTTCGAGATGT 60.418 50.000 0.00 0.00 0.00 3.06
36 37 2.603110 CGTTATGGGTGTTCGAGATGTG 59.397 50.000 0.00 0.00 0.00 3.21
37 38 3.596214 GTTATGGGTGTTCGAGATGTGT 58.404 45.455 0.00 0.00 0.00 3.72
38 39 2.859165 ATGGGTGTTCGAGATGTGTT 57.141 45.000 0.00 0.00 0.00 3.32
39 40 2.163818 TGGGTGTTCGAGATGTGTTC 57.836 50.000 0.00 0.00 0.00 3.18
40 41 1.068474 GGGTGTTCGAGATGTGTTCG 58.932 55.000 0.00 0.00 39.33 3.95
41 42 1.604693 GGGTGTTCGAGATGTGTTCGT 60.605 52.381 0.00 0.00 39.05 3.85
42 43 2.132762 GGTGTTCGAGATGTGTTCGTT 58.867 47.619 0.00 0.00 39.05 3.85
43 44 2.542595 GGTGTTCGAGATGTGTTCGTTT 59.457 45.455 0.00 0.00 39.05 3.60
44 45 3.001939 GGTGTTCGAGATGTGTTCGTTTT 59.998 43.478 0.00 0.00 39.05 2.43
45 46 3.960002 GTGTTCGAGATGTGTTCGTTTTG 59.040 43.478 0.00 0.00 39.05 2.44
46 47 2.941891 TCGAGATGTGTTCGTTTTGC 57.058 45.000 0.00 0.00 39.05 3.68
47 48 2.479837 TCGAGATGTGTTCGTTTTGCT 58.520 42.857 0.00 0.00 39.05 3.91
48 49 2.869801 TCGAGATGTGTTCGTTTTGCTT 59.130 40.909 0.00 0.00 39.05 3.91
49 50 2.966708 CGAGATGTGTTCGTTTTGCTTG 59.033 45.455 0.00 0.00 33.57 4.01
50 51 3.303066 CGAGATGTGTTCGTTTTGCTTGA 60.303 43.478 0.00 0.00 33.57 3.02
51 52 4.214437 GAGATGTGTTCGTTTTGCTTGAG 58.786 43.478 0.00 0.00 0.00 3.02
52 53 3.627577 AGATGTGTTCGTTTTGCTTGAGT 59.372 39.130 0.00 0.00 0.00 3.41
53 54 3.398954 TGTGTTCGTTTTGCTTGAGTC 57.601 42.857 0.00 0.00 0.00 3.36
54 55 2.096819 TGTGTTCGTTTTGCTTGAGTCC 59.903 45.455 0.00 0.00 0.00 3.85
55 56 2.354821 GTGTTCGTTTTGCTTGAGTCCT 59.645 45.455 0.00 0.00 0.00 3.85
56 57 3.013921 TGTTCGTTTTGCTTGAGTCCTT 58.986 40.909 0.00 0.00 0.00 3.36
57 58 3.442273 TGTTCGTTTTGCTTGAGTCCTTT 59.558 39.130 0.00 0.00 0.00 3.11
58 59 3.963383 TCGTTTTGCTTGAGTCCTTTC 57.037 42.857 0.00 0.00 0.00 2.62
59 60 2.286833 TCGTTTTGCTTGAGTCCTTTCG 59.713 45.455 0.00 0.00 0.00 3.46
60 61 2.031683 CGTTTTGCTTGAGTCCTTTCGT 59.968 45.455 0.00 0.00 0.00 3.85
61 62 3.618698 GTTTTGCTTGAGTCCTTTCGTC 58.381 45.455 0.00 0.00 0.00 4.20
62 63 2.613026 TTGCTTGAGTCCTTTCGTCA 57.387 45.000 0.00 0.00 0.00 4.35
63 64 2.154854 TGCTTGAGTCCTTTCGTCAG 57.845 50.000 0.00 0.00 0.00 3.51
64 65 1.686587 TGCTTGAGTCCTTTCGTCAGA 59.313 47.619 0.00 0.00 0.00 3.27
65 66 2.300152 TGCTTGAGTCCTTTCGTCAGAT 59.700 45.455 0.00 0.00 0.00 2.90
66 67 2.670414 GCTTGAGTCCTTTCGTCAGATG 59.330 50.000 0.00 0.00 0.00 2.90
67 68 2.370281 TGAGTCCTTTCGTCAGATGC 57.630 50.000 0.00 0.00 0.00 3.91
68 69 1.272781 GAGTCCTTTCGTCAGATGCG 58.727 55.000 0.00 0.00 0.00 4.73
69 70 0.888619 AGTCCTTTCGTCAGATGCGA 59.111 50.000 0.00 0.00 36.51 5.10
70 71 1.135257 AGTCCTTTCGTCAGATGCGAG 60.135 52.381 0.00 0.00 39.61 5.03
71 72 0.173481 TCCTTTCGTCAGATGCGAGG 59.827 55.000 0.00 5.24 39.61 4.63
72 73 0.807667 CCTTTCGTCAGATGCGAGGG 60.808 60.000 0.00 0.00 39.61 4.30
73 74 0.173481 CTTTCGTCAGATGCGAGGGA 59.827 55.000 0.00 0.00 39.61 4.20
74 75 0.173481 TTTCGTCAGATGCGAGGGAG 59.827 55.000 0.00 0.00 39.61 4.30
75 76 2.279120 CGTCAGATGCGAGGGAGC 60.279 66.667 0.00 0.00 37.71 4.70
76 77 2.279120 GTCAGATGCGAGGGAGCG 60.279 66.667 0.00 0.00 40.67 5.03
77 78 2.440247 TCAGATGCGAGGGAGCGA 60.440 61.111 0.00 0.00 40.67 4.93
78 79 2.027314 CAGATGCGAGGGAGCGAG 59.973 66.667 0.00 0.00 40.67 5.03
79 80 3.910490 AGATGCGAGGGAGCGAGC 61.910 66.667 0.00 0.00 40.67 5.03
80 81 4.959596 GATGCGAGGGAGCGAGCC 62.960 72.222 0.00 0.00 40.67 4.70
84 85 4.598894 CGAGGGAGCGAGCCATGG 62.599 72.222 7.63 7.63 0.00 3.66
85 86 4.247380 GAGGGAGCGAGCCATGGG 62.247 72.222 15.13 0.00 0.00 4.00
86 87 4.804420 AGGGAGCGAGCCATGGGA 62.804 66.667 15.13 0.00 0.00 4.37
87 88 4.554036 GGGAGCGAGCCATGGGAC 62.554 72.222 15.13 0.00 0.00 4.46
88 89 4.899239 GGAGCGAGCCATGGGACG 62.899 72.222 15.13 5.54 0.00 4.79
89 90 3.838271 GAGCGAGCCATGGGACGA 61.838 66.667 15.13 0.00 0.00 4.20
90 91 4.148825 AGCGAGCCATGGGACGAC 62.149 66.667 15.13 0.00 0.00 4.34
93 94 4.451150 GAGCCATGGGACGACGCA 62.451 66.667 15.13 7.13 42.77 5.24
95 96 2.108157 GCCATGGGACGACGCATA 59.892 61.111 15.13 0.00 45.56 3.14
96 97 1.956170 GCCATGGGACGACGCATAG 60.956 63.158 15.13 10.95 45.56 2.23
97 98 1.441729 CCATGGGACGACGCATAGT 59.558 57.895 16.12 0.00 45.56 2.12
98 99 0.179084 CCATGGGACGACGCATAGTT 60.179 55.000 16.12 0.00 45.56 2.24
99 100 1.651987 CATGGGACGACGCATAGTTT 58.348 50.000 16.12 0.00 45.56 2.66
100 101 1.327460 CATGGGACGACGCATAGTTTG 59.673 52.381 16.12 2.99 45.56 2.93
101 102 0.319083 TGGGACGACGCATAGTTTGT 59.681 50.000 0.00 0.00 34.12 2.83
102 103 1.270412 TGGGACGACGCATAGTTTGTT 60.270 47.619 0.00 0.00 34.12 2.83
103 104 1.127951 GGGACGACGCATAGTTTGTTG 59.872 52.381 0.00 0.00 0.00 3.33
104 105 1.796459 GGACGACGCATAGTTTGTTGT 59.204 47.619 0.00 0.00 33.01 3.32
105 106 2.159881 GGACGACGCATAGTTTGTTGTC 60.160 50.000 0.00 3.87 43.30 3.18
106 107 1.796459 ACGACGCATAGTTTGTTGTCC 59.204 47.619 0.00 0.00 32.50 4.02
107 108 1.127951 CGACGCATAGTTTGTTGTCCC 59.872 52.381 0.00 0.00 32.50 4.46
108 109 1.127951 GACGCATAGTTTGTTGTCCCG 59.872 52.381 0.00 0.00 30.95 5.14
109 110 1.153353 CGCATAGTTTGTTGTCCCGT 58.847 50.000 0.00 0.00 0.00 5.28
110 111 1.136085 CGCATAGTTTGTTGTCCCGTG 60.136 52.381 0.00 0.00 0.00 4.94
111 112 2.147958 GCATAGTTTGTTGTCCCGTGA 58.852 47.619 0.00 0.00 0.00 4.35
112 113 2.747446 GCATAGTTTGTTGTCCCGTGAT 59.253 45.455 0.00 0.00 0.00 3.06
113 114 3.181510 GCATAGTTTGTTGTCCCGTGATC 60.182 47.826 0.00 0.00 0.00 2.92
114 115 2.930826 AGTTTGTTGTCCCGTGATCT 57.069 45.000 0.00 0.00 0.00 2.75
115 116 2.494059 AGTTTGTTGTCCCGTGATCTG 58.506 47.619 0.00 0.00 0.00 2.90
116 117 1.535462 GTTTGTTGTCCCGTGATCTGG 59.465 52.381 0.00 0.00 0.00 3.86
117 118 1.052617 TTGTTGTCCCGTGATCTGGA 58.947 50.000 6.18 1.16 0.00 3.86
118 119 1.275666 TGTTGTCCCGTGATCTGGAT 58.724 50.000 6.18 0.00 32.20 3.41
119 120 1.066215 TGTTGTCCCGTGATCTGGATG 60.066 52.381 6.18 0.00 32.20 3.51
120 121 0.107703 TTGTCCCGTGATCTGGATGC 60.108 55.000 6.18 0.00 32.20 3.91
121 122 1.592669 GTCCCGTGATCTGGATGCG 60.593 63.158 6.18 0.00 32.20 4.73
122 123 2.058001 TCCCGTGATCTGGATGCGT 61.058 57.895 6.18 0.00 0.00 5.24
123 124 1.592669 CCCGTGATCTGGATGCGTC 60.593 63.158 0.00 0.00 0.00 5.19
124 125 1.592669 CCGTGATCTGGATGCGTCC 60.593 63.158 18.69 18.69 45.31 4.79
134 135 2.325583 GGATGCGTCCATTACCTCAA 57.674 50.000 20.55 0.00 44.42 3.02
135 136 2.213499 GGATGCGTCCATTACCTCAAG 58.787 52.381 20.55 0.00 44.42 3.02
136 137 1.599542 GATGCGTCCATTACCTCAAGC 59.400 52.381 0.00 0.00 0.00 4.01
137 138 0.739462 TGCGTCCATTACCTCAAGCG 60.739 55.000 0.00 0.00 0.00 4.68
138 139 2.006772 CGTCCATTACCTCAAGCGC 58.993 57.895 0.00 0.00 0.00 5.92
139 140 0.739462 CGTCCATTACCTCAAGCGCA 60.739 55.000 11.47 0.00 0.00 6.09
140 141 1.009829 GTCCATTACCTCAAGCGCAG 58.990 55.000 11.47 0.72 0.00 5.18
145 146 2.380084 TTACCTCAAGCGCAGTTAGG 57.620 50.000 11.47 13.28 0.00 2.69
148 149 1.202770 ACCTCAAGCGCAGTTAGGTTT 60.203 47.619 11.47 0.00 37.25 3.27
153 154 4.069304 TCAAGCGCAGTTAGGTTTATTGT 58.931 39.130 11.47 0.00 0.00 2.71
155 156 4.419522 AGCGCAGTTAGGTTTATTGTTG 57.580 40.909 11.47 0.00 0.00 3.33
156 157 4.069304 AGCGCAGTTAGGTTTATTGTTGA 58.931 39.130 11.47 0.00 0.00 3.18
162 163 6.856426 GCAGTTAGGTTTATTGTTGAAGTGAC 59.144 38.462 0.00 0.00 0.00 3.67
164 165 8.621286 CAGTTAGGTTTATTGTTGAAGTGACTT 58.379 33.333 0.00 0.00 0.00 3.01
211 212 1.615424 AGGTACTGGGCCACCGAAT 60.615 57.895 0.00 0.00 39.94 3.34
218 219 0.180171 TGGGCCACCGAATACAGATG 59.820 55.000 0.00 0.00 40.75 2.90
219 220 1.166531 GGGCCACCGAATACAGATGC 61.167 60.000 4.39 0.00 0.00 3.91
237 238 1.355210 CGCTGTTGCAGTTTTCGGT 59.645 52.632 0.00 0.00 39.64 4.69
252 253 2.994186 TCGGTGGCCTAATCTTTACC 57.006 50.000 3.32 0.00 0.00 2.85
258 259 1.940613 GGCCTAATCTTTACCGTGCAG 59.059 52.381 0.00 0.00 0.00 4.41
259 260 2.629051 GCCTAATCTTTACCGTGCAGT 58.371 47.619 0.00 0.00 0.00 4.40
261 262 3.554731 GCCTAATCTTTACCGTGCAGTAC 59.445 47.826 0.00 0.00 0.00 2.73
262 263 4.751060 CCTAATCTTTACCGTGCAGTACA 58.249 43.478 0.00 0.00 0.00 2.90
286 313 1.405105 GTCTTTGTGTTTCTGCTGCCA 59.595 47.619 0.00 0.00 0.00 4.92
289 316 2.340210 TTGTGTTTCTGCTGCCAGTA 57.660 45.000 0.00 0.00 40.09 2.74
315 342 5.402054 ACCCAATAATCATCCAGCCTTTA 57.598 39.130 0.00 0.00 0.00 1.85
316 343 5.969086 ACCCAATAATCATCCAGCCTTTAT 58.031 37.500 0.00 0.00 0.00 1.40
317 344 6.384603 ACCCAATAATCATCCAGCCTTTATT 58.615 36.000 0.00 0.00 0.00 1.40
325 352 8.918202 AATCATCCAGCCTTTATTTACGATTA 57.082 30.769 0.00 0.00 0.00 1.75
326 353 9.520515 AATCATCCAGCCTTTATTTACGATTAT 57.479 29.630 0.00 0.00 0.00 1.28
351 378 6.809196 TGGTGTTGTGTTATTCTTTGTTTGTC 59.191 34.615 0.00 0.00 0.00 3.18
543 572 5.472820 TGACATGCATCTGACATTGTTTGTA 59.527 36.000 0.00 0.00 39.18 2.41
545 574 5.474532 ACATGCATCTGACATTGTTTGTACT 59.525 36.000 0.00 0.00 39.18 2.73
603 633 3.778954 ATGAGCTTACTATTGGGCCTC 57.221 47.619 4.53 0.00 0.00 4.70
604 634 2.764269 TGAGCTTACTATTGGGCCTCT 58.236 47.619 4.53 0.00 0.00 3.69
605 635 2.700897 TGAGCTTACTATTGGGCCTCTC 59.299 50.000 4.53 0.00 0.00 3.20
606 636 2.969262 GAGCTTACTATTGGGCCTCTCT 59.031 50.000 4.53 0.00 0.00 3.10
607 637 2.703007 AGCTTACTATTGGGCCTCTCTG 59.297 50.000 4.53 0.00 0.00 3.35
608 638 2.436173 GCTTACTATTGGGCCTCTCTGT 59.564 50.000 4.53 0.00 0.00 3.41
609 639 3.493524 GCTTACTATTGGGCCTCTCTGTC 60.494 52.174 4.53 0.00 0.00 3.51
610 640 2.254152 ACTATTGGGCCTCTCTGTCA 57.746 50.000 4.53 0.00 0.00 3.58
612 642 2.503356 ACTATTGGGCCTCTCTGTCAAG 59.497 50.000 4.53 0.00 0.00 3.02
613 643 1.366319 ATTGGGCCTCTCTGTCAAGT 58.634 50.000 4.53 0.00 0.00 3.16
614 644 1.140312 TTGGGCCTCTCTGTCAAGTT 58.860 50.000 4.53 0.00 0.00 2.66
615 645 2.024176 TGGGCCTCTCTGTCAAGTTA 57.976 50.000 4.53 0.00 0.00 2.24
616 646 1.623811 TGGGCCTCTCTGTCAAGTTAC 59.376 52.381 4.53 0.00 0.00 2.50
617 647 1.066071 GGGCCTCTCTGTCAAGTTACC 60.066 57.143 0.84 0.00 0.00 2.85
618 648 1.623811 GGCCTCTCTGTCAAGTTACCA 59.376 52.381 0.00 0.00 0.00 3.25
692 732 0.732571 CGTTCTGGTTGCACAGTTGT 59.267 50.000 4.42 0.00 39.48 3.32
751 791 3.257469 TGCAGCAGAGATTTACTCCAG 57.743 47.619 0.00 0.00 45.96 3.86
770 810 1.694150 AGTTTCTGCAGCCAGTAGTCA 59.306 47.619 9.47 0.00 40.09 3.41
776 816 1.972198 CAGCCAGTAGTCACCCGAA 59.028 57.895 0.00 0.00 0.00 4.30
788 828 0.661020 CACCCGAAACCACACACTTC 59.339 55.000 0.00 0.00 0.00 3.01
826 866 5.876357 ACATGAGTACACAATTTACACCCT 58.124 37.500 0.00 0.00 0.00 4.34
827 867 5.705441 ACATGAGTACACAATTTACACCCTG 59.295 40.000 0.00 0.00 0.00 4.45
828 868 5.298989 TGAGTACACAATTTACACCCTGT 57.701 39.130 0.00 0.00 0.00 4.00
844 889 4.783764 CCCTGTTGGTTATGAGGTTTTC 57.216 45.455 0.00 0.00 0.00 2.29
911 958 7.820044 TGTTGTTATTGTTCTTTTGTGTTCC 57.180 32.000 0.00 0.00 0.00 3.62
915 966 7.262048 TGTTATTGTTCTTTTGTGTTCCCTTC 58.738 34.615 0.00 0.00 0.00 3.46
924 975 6.264518 TCTTTTGTGTTCCCTTCCTTTATGTC 59.735 38.462 0.00 0.00 0.00 3.06
1047 1100 7.222611 TGTTTTTGCAAATTAGCTTGTCTTCTC 59.777 33.333 13.65 0.00 34.99 2.87
1075 1128 5.312120 AGTTTGATAGTAGTGACACCTCG 57.688 43.478 0.84 0.00 0.00 4.63
1079 1132 5.349061 TGATAGTAGTGACACCTCGAGTA 57.651 43.478 12.31 0.00 0.00 2.59
1086 1139 3.323979 AGTGACACCTCGAGTATGGTTTT 59.676 43.478 12.31 0.00 33.75 2.43
1087 1140 4.525487 AGTGACACCTCGAGTATGGTTTTA 59.475 41.667 12.31 0.00 33.75 1.52
1088 1141 4.624452 GTGACACCTCGAGTATGGTTTTAC 59.376 45.833 12.31 0.00 33.75 2.01
1089 1142 4.281435 TGACACCTCGAGTATGGTTTTACA 59.719 41.667 12.31 2.92 33.75 2.41
1090 1143 5.217978 ACACCTCGAGTATGGTTTTACAA 57.782 39.130 12.31 0.00 33.75 2.41
1091 1144 5.801380 ACACCTCGAGTATGGTTTTACAAT 58.199 37.500 12.31 0.00 33.75 2.71
1092 1145 6.235664 ACACCTCGAGTATGGTTTTACAATT 58.764 36.000 12.31 0.00 33.75 2.32
1093 1146 6.148811 ACACCTCGAGTATGGTTTTACAATTG 59.851 38.462 12.31 3.24 33.75 2.32
1094 1147 6.148811 CACCTCGAGTATGGTTTTACAATTGT 59.851 38.462 16.68 16.68 33.75 2.71
1095 1148 6.713450 ACCTCGAGTATGGTTTTACAATTGTT 59.287 34.615 17.78 0.00 31.62 2.83
1096 1149 7.021196 CCTCGAGTATGGTTTTACAATTGTTG 58.979 38.462 17.78 0.00 0.00 3.33
1098 1151 7.577979 TCGAGTATGGTTTTACAATTGTTGTC 58.422 34.615 17.78 5.43 44.12 3.18
1099 1152 7.442969 TCGAGTATGGTTTTACAATTGTTGTCT 59.557 33.333 17.78 3.21 44.12 3.41
1100 1153 8.073768 CGAGTATGGTTTTACAATTGTTGTCTT 58.926 33.333 17.78 4.11 44.12 3.01
1319 1372 3.053991 TCTTCTTCAAACAGGAACCACCA 60.054 43.478 0.00 0.00 42.04 4.17
1399 1452 1.019805 GCTACTTCCACAACCGCCTC 61.020 60.000 0.00 0.00 0.00 4.70
1474 1528 6.030228 GGTATCACATTTTGCTGCTAAGTTC 58.970 40.000 0.00 0.00 0.00 3.01
1477 1531 6.875948 TCACATTTTGCTGCTAAGTTCTTA 57.124 33.333 0.00 0.00 0.00 2.10
1510 1609 8.734386 AGACAAAGAAATGTTGCTAGAATTAGG 58.266 33.333 0.00 0.00 32.57 2.69
1544 1647 7.491682 ACTCTGTTTGTAATTTGCATTTCACT 58.508 30.769 0.00 0.00 0.00 3.41
1594 1697 4.943705 CCCTACAGTTTGATATGCTTGTGT 59.056 41.667 0.00 0.00 0.00 3.72
1657 1760 8.894768 ATGTTATTTATAGACCACTGCTTCTC 57.105 34.615 0.00 0.00 0.00 2.87
1679 1782 5.375773 TCTTAGCATGCCTGTATTTATGCA 58.624 37.500 15.66 0.00 46.20 3.96
1703 1806 5.488341 TGCCAGTCCTTCTGTAATCTTAAC 58.512 41.667 0.00 0.00 42.19 2.01
1713 1816 7.659390 CCTTCTGTAATCTTAACCCTCATGATC 59.341 40.741 0.00 0.00 0.00 2.92
1736 1839 0.381801 AACTTCCTGTGTTTGCTGCG 59.618 50.000 0.00 0.00 0.00 5.18
1742 1845 1.269206 CCTGTGTTTGCTGCGACAAAT 60.269 47.619 9.74 0.00 41.31 2.32
1804 1907 3.081061 TGTATTTACTGGGCTGTGCTTG 58.919 45.455 0.00 0.00 0.00 4.01
1991 2095 8.889717 TCCGGTATGTTTTCAATCTCTTTATTC 58.110 33.333 0.00 0.00 0.00 1.75
2013 2117 3.804325 CCTATTCCAGCATTGTGTCTACG 59.196 47.826 0.00 0.00 0.00 3.51
2031 2135 1.732259 ACGCCTAAATCTTCTGTTGCG 59.268 47.619 0.00 0.00 45.59 4.85
2042 2146 6.801539 ATCTTCTGTTGCGAAAACTGATAA 57.198 33.333 10.36 4.69 0.00 1.75
2086 2190 9.143631 GCTGTTGATATTATTGTTTGCTTTTCT 57.856 29.630 0.00 0.00 0.00 2.52
2133 2237 0.809241 GCAGTGAGATCAAGGAGCGG 60.809 60.000 0.00 0.00 0.00 5.52
2273 2377 1.082104 GCGGGAAGCGTTGAAAGTG 60.082 57.895 0.00 0.00 35.41 3.16
2274 2378 1.082104 CGGGAAGCGTTGAAAGTGC 60.082 57.895 0.00 0.00 0.00 4.40
2275 2379 1.082104 GGGAAGCGTTGAAAGTGCG 60.082 57.895 0.00 0.00 0.00 5.34
2276 2380 1.647084 GGAAGCGTTGAAAGTGCGT 59.353 52.632 0.00 0.00 0.00 5.24
2277 2381 0.028902 GGAAGCGTTGAAAGTGCGTT 59.971 50.000 0.00 0.00 0.00 4.84
2278 2382 1.112459 GAAGCGTTGAAAGTGCGTTG 58.888 50.000 0.00 0.00 0.00 4.10
2279 2383 0.730265 AAGCGTTGAAAGTGCGTTGA 59.270 45.000 0.00 0.00 0.00 3.18
2280 2384 0.730265 AGCGTTGAAAGTGCGTTGAA 59.270 45.000 0.00 0.00 0.00 2.69
2281 2385 1.131504 AGCGTTGAAAGTGCGTTGAAA 59.868 42.857 0.00 0.00 0.00 2.69
2282 2386 1.512771 GCGTTGAAAGTGCGTTGAAAG 59.487 47.619 0.00 0.00 0.00 2.62
2283 2387 2.780993 CGTTGAAAGTGCGTTGAAAGT 58.219 42.857 0.00 0.00 0.00 2.66
2294 2398 1.722464 CGTTGAAAGTCGATTACGCCA 59.278 47.619 0.00 0.00 39.58 5.69
2477 2581 7.658575 GGTACTTATGTTGGTTCTTGTCACTTA 59.341 37.037 0.00 0.00 0.00 2.24
2481 2585 8.514330 TTATGTTGGTTCTTGTCACTTAGTTT 57.486 30.769 0.00 0.00 0.00 2.66
2482 2586 6.827586 TGTTGGTTCTTGTCACTTAGTTTT 57.172 33.333 0.00 0.00 0.00 2.43
2483 2587 6.848451 TGTTGGTTCTTGTCACTTAGTTTTC 58.152 36.000 0.00 0.00 0.00 2.29
2485 2589 6.920569 TGGTTCTTGTCACTTAGTTTTCTC 57.079 37.500 0.00 0.00 0.00 2.87
2486 2590 6.411376 TGGTTCTTGTCACTTAGTTTTCTCA 58.589 36.000 0.00 0.00 0.00 3.27
2487 2591 7.054124 TGGTTCTTGTCACTTAGTTTTCTCAT 58.946 34.615 0.00 0.00 0.00 2.90
2488 2592 7.012327 TGGTTCTTGTCACTTAGTTTTCTCATG 59.988 37.037 0.00 0.00 0.00 3.07
2491 2595 6.542005 TCTTGTCACTTAGTTTTCTCATGCAA 59.458 34.615 0.00 0.00 0.00 4.08
2492 2596 6.060028 TGTCACTTAGTTTTCTCATGCAAC 57.940 37.500 0.00 0.00 0.00 4.17
2493 2597 5.822519 TGTCACTTAGTTTTCTCATGCAACT 59.177 36.000 0.00 0.00 35.00 3.16
2494 2598 6.138761 GTCACTTAGTTTTCTCATGCAACTG 58.861 40.000 0.00 0.00 32.88 3.16
2496 2600 4.022849 ACTTAGTTTTCTCATGCAACTGGC 60.023 41.667 0.00 0.00 45.13 4.85
2514 2618 4.567318 GCCAAGGCGATGGATCTT 57.433 55.556 15.36 0.00 43.54 2.40
2515 2619 2.799176 GCCAAGGCGATGGATCTTT 58.201 52.632 15.36 0.00 43.54 2.52
2516 2620 1.967319 GCCAAGGCGATGGATCTTTA 58.033 50.000 15.36 0.00 43.54 1.85
2517 2621 2.508526 GCCAAGGCGATGGATCTTTAT 58.491 47.619 15.36 0.00 43.54 1.40
2518 2622 3.674997 GCCAAGGCGATGGATCTTTATA 58.325 45.455 15.36 0.00 43.54 0.98
2519 2623 3.686726 GCCAAGGCGATGGATCTTTATAG 59.313 47.826 15.36 0.00 43.54 1.31
2521 2625 4.256920 CAAGGCGATGGATCTTTATAGGG 58.743 47.826 0.00 0.00 0.00 3.53
2527 2635 3.485463 TGGATCTTTATAGGGTTGCCG 57.515 47.619 0.00 0.00 0.00 5.69
2531 2639 2.361789 TCTTTATAGGGTTGCCGTTGC 58.638 47.619 0.00 0.00 38.26 4.17
2535 2643 0.392998 ATAGGGTTGCCGTTGCTCTG 60.393 55.000 0.00 0.00 38.71 3.35
2536 2644 1.764571 TAGGGTTGCCGTTGCTCTGT 61.765 55.000 0.00 0.00 38.71 3.41
2540 2648 0.602905 GTTGCCGTTGCTCTGTAGGT 60.603 55.000 0.00 0.00 38.71 3.08
2541 2649 0.320421 TTGCCGTTGCTCTGTAGGTC 60.320 55.000 0.00 0.00 38.71 3.85
2557 2665 6.717540 TCTGTAGGTCCTCTAGCTGATTATTC 59.282 42.308 0.00 0.00 37.13 1.75
2558 2666 6.615617 TGTAGGTCCTCTAGCTGATTATTCT 58.384 40.000 0.00 0.00 37.13 2.40
2559 2667 7.756614 TGTAGGTCCTCTAGCTGATTATTCTA 58.243 38.462 0.00 0.00 37.13 2.10
2560 2668 8.394822 TGTAGGTCCTCTAGCTGATTATTCTAT 58.605 37.037 0.00 0.00 37.13 1.98
2561 2669 9.908747 GTAGGTCCTCTAGCTGATTATTCTATA 57.091 37.037 0.00 0.00 37.13 1.31
2563 2671 7.559897 AGGTCCTCTAGCTGATTATTCTATAGC 59.440 40.741 0.00 0.00 33.68 2.97
2564 2672 7.559897 GGTCCTCTAGCTGATTATTCTATAGCT 59.440 40.741 0.00 0.00 45.74 3.32
2565 2673 8.966868 GTCCTCTAGCTGATTATTCTATAGCTT 58.033 37.037 0.00 0.00 41.60 3.74
2566 2674 9.184523 TCCTCTAGCTGATTATTCTATAGCTTC 57.815 37.037 0.00 0.00 41.60 3.86
2567 2675 9.189156 CCTCTAGCTGATTATTCTATAGCTTCT 57.811 37.037 0.00 0.00 41.60 2.85
2584 2692 5.841810 AGCTTCTAAGTCTTGCTATAGCTG 58.158 41.667 24.61 16.95 42.66 4.24
2588 2696 7.116233 GCTTCTAAGTCTTGCTATAGCTGATTC 59.884 40.741 24.61 11.88 42.66 2.52
2590 2698 8.926092 TCTAAGTCTTGCTATAGCTGATTCTA 57.074 34.615 24.61 13.24 42.66 2.10
2591 2699 9.355916 TCTAAGTCTTGCTATAGCTGATTCTAA 57.644 33.333 24.61 8.53 42.66 2.10
2601 2709 7.598493 GCTATAGCTGATTCTAAGAAGTTCCTG 59.402 40.741 17.75 0.00 38.21 3.86
2619 2727 2.389715 CTGGTCTCCCGTCCTAATTCT 58.610 52.381 0.00 0.00 0.00 2.40
2627 2735 5.711036 TCTCCCGTCCTAATTCTATAGCTTC 59.289 44.000 0.00 0.00 0.00 3.86
2666 2774 4.918810 ACTTCGAAAATCAAACCTTGCT 57.081 36.364 0.00 0.00 0.00 3.91
2667 2775 7.681939 ATACTTCGAAAATCAAACCTTGCTA 57.318 32.000 0.00 0.00 0.00 3.49
2668 2776 5.758924 ACTTCGAAAATCAAACCTTGCTAC 58.241 37.500 0.00 0.00 0.00 3.58
2669 2777 4.759516 TCGAAAATCAAACCTTGCTACC 57.240 40.909 0.00 0.00 0.00 3.18
2670 2778 4.394729 TCGAAAATCAAACCTTGCTACCT 58.605 39.130 0.00 0.00 0.00 3.08
2671 2779 4.825085 TCGAAAATCAAACCTTGCTACCTT 59.175 37.500 0.00 0.00 0.00 3.50
2672 2780 5.998981 TCGAAAATCAAACCTTGCTACCTTA 59.001 36.000 0.00 0.00 0.00 2.69
2673 2781 6.657541 TCGAAAATCAAACCTTGCTACCTTAT 59.342 34.615 0.00 0.00 0.00 1.73
2674 2782 6.747280 CGAAAATCAAACCTTGCTACCTTATG 59.253 38.462 0.00 0.00 0.00 1.90
2675 2783 7.539034 AAAATCAAACCTTGCTACCTTATGT 57.461 32.000 0.00 0.00 0.00 2.29
2676 2784 8.644374 AAAATCAAACCTTGCTACCTTATGTA 57.356 30.769 0.00 0.00 0.00 2.29
2677 2785 8.823220 AAATCAAACCTTGCTACCTTATGTAT 57.177 30.769 0.00 0.00 0.00 2.29
2678 2786 7.807977 ATCAAACCTTGCTACCTTATGTATG 57.192 36.000 0.00 0.00 0.00 2.39
2679 2787 6.953101 TCAAACCTTGCTACCTTATGTATGA 58.047 36.000 0.00 0.00 0.00 2.15
2680 2788 7.573710 TCAAACCTTGCTACCTTATGTATGAT 58.426 34.615 0.00 0.00 0.00 2.45
2681 2789 7.715249 TCAAACCTTGCTACCTTATGTATGATC 59.285 37.037 0.00 0.00 0.00 2.92
2682 2790 6.747414 ACCTTGCTACCTTATGTATGATCA 57.253 37.500 0.00 0.00 0.00 2.92
2683 2791 7.321717 ACCTTGCTACCTTATGTATGATCAT 57.678 36.000 13.81 13.81 0.00 2.45
2684 2792 8.435931 ACCTTGCTACCTTATGTATGATCATA 57.564 34.615 11.49 11.49 0.00 2.15
2685 2793 9.051259 ACCTTGCTACCTTATGTATGATCATAT 57.949 33.333 18.18 7.39 31.58 1.78
2689 2797 9.715119 TGCTACCTTATGTATGATCATATACCT 57.285 33.333 18.18 5.32 33.56 3.08
2690 2798 9.973450 GCTACCTTATGTATGATCATATACCTG 57.027 37.037 18.18 8.92 33.56 4.00
2726 2834 7.881751 TGATCAATGAGATTTATAGGAGCAAGG 59.118 37.037 0.00 0.00 37.00 3.61
2734 2842 1.356124 ATAGGAGCAAGGGCATCGAT 58.644 50.000 0.00 0.00 44.61 3.59
2746 2854 1.401905 GGCATCGATTGGTTTCACCTC 59.598 52.381 0.00 0.00 39.58 3.85
2748 2856 2.941415 GCATCGATTGGTTTCACCTCCT 60.941 50.000 0.00 0.00 39.58 3.69
2749 2857 2.472695 TCGATTGGTTTCACCTCCTG 57.527 50.000 0.00 0.00 39.58 3.86
2750 2858 0.804989 CGATTGGTTTCACCTCCTGC 59.195 55.000 0.00 0.00 39.58 4.85
2751 2859 1.881925 CGATTGGTTTCACCTCCTGCA 60.882 52.381 0.00 0.00 39.58 4.41
2752 2860 2.238521 GATTGGTTTCACCTCCTGCAA 58.761 47.619 0.00 0.00 39.58 4.08
2753 2861 1.691196 TTGGTTTCACCTCCTGCAAG 58.309 50.000 0.00 0.00 39.58 4.01
2754 2862 0.178992 TGGTTTCACCTCCTGCAAGG 60.179 55.000 2.71 2.71 46.99 3.61
2755 2863 3.555860 TGGTTTCACCTCCTGCAAGGG 62.556 57.143 9.27 3.78 46.08 3.95
2766 2874 3.924507 GCAAGGGCATCGATTGGT 58.075 55.556 0.00 0.00 40.72 3.67
2767 2875 2.192605 GCAAGGGCATCGATTGGTT 58.807 52.632 0.00 0.00 40.72 3.67
2768 2876 0.532115 GCAAGGGCATCGATTGGTTT 59.468 50.000 0.00 0.00 40.72 3.27
2769 2877 1.469767 GCAAGGGCATCGATTGGTTTC 60.470 52.381 0.00 0.00 40.72 2.78
2770 2878 1.818060 CAAGGGCATCGATTGGTTTCA 59.182 47.619 0.00 0.00 0.00 2.69
2771 2879 1.463674 AGGGCATCGATTGGTTTCAC 58.536 50.000 0.00 0.00 0.00 3.18
2772 2880 0.455815 GGGCATCGATTGGTTTCACC 59.544 55.000 0.00 0.00 39.22 4.02
2773 2881 1.463674 GGCATCGATTGGTTTCACCT 58.536 50.000 0.00 0.00 39.58 4.00
2774 2882 1.401905 GGCATCGATTGGTTTCACCTC 59.598 52.381 0.00 0.00 39.58 3.85
2775 2883 1.401905 GCATCGATTGGTTTCACCTCC 59.598 52.381 0.00 0.00 39.58 4.30
2776 2884 2.941415 GCATCGATTGGTTTCACCTCCT 60.941 50.000 0.00 0.00 39.58 3.69
2777 2885 2.762535 TCGATTGGTTTCACCTCCTC 57.237 50.000 0.00 0.00 39.58 3.71
2778 2886 1.974957 TCGATTGGTTTCACCTCCTCA 59.025 47.619 0.00 0.00 39.58 3.86
2779 2887 2.571653 TCGATTGGTTTCACCTCCTCAT 59.428 45.455 0.00 0.00 39.58 2.90
2780 2888 3.009033 TCGATTGGTTTCACCTCCTCATT 59.991 43.478 0.00 0.00 39.58 2.57
2781 2889 3.375299 CGATTGGTTTCACCTCCTCATTC 59.625 47.826 0.00 0.00 39.58 2.67
2782 2890 2.472695 TGGTTTCACCTCCTCATTCG 57.527 50.000 0.00 0.00 39.58 3.34
2783 2891 1.087501 GGTTTCACCTCCTCATTCGC 58.912 55.000 0.00 0.00 34.73 4.70
2784 2892 0.721718 GTTTCACCTCCTCATTCGCG 59.278 55.000 0.00 0.00 0.00 5.87
2785 2893 1.019278 TTTCACCTCCTCATTCGCGC 61.019 55.000 0.00 0.00 0.00 6.86
2786 2894 2.125552 CACCTCCTCATTCGCGCA 60.126 61.111 8.75 0.00 0.00 6.09
2787 2895 2.125512 ACCTCCTCATTCGCGCAC 60.126 61.111 8.75 0.00 0.00 5.34
2788 2896 2.125552 CCTCCTCATTCGCGCACA 60.126 61.111 8.75 0.00 0.00 4.57
2789 2897 2.169789 CCTCCTCATTCGCGCACAG 61.170 63.158 8.75 0.00 0.00 3.66
2790 2898 2.125552 TCCTCATTCGCGCACAGG 60.126 61.111 8.75 3.88 0.00 4.00
2791 2899 2.434884 CCTCATTCGCGCACAGGT 60.435 61.111 8.75 0.00 0.00 4.00
2792 2900 1.153647 CCTCATTCGCGCACAGGTA 60.154 57.895 8.75 0.00 0.00 3.08
2793 2901 0.739462 CCTCATTCGCGCACAGGTAA 60.739 55.000 8.75 0.00 0.00 2.85
2794 2902 1.290203 CTCATTCGCGCACAGGTAAT 58.710 50.000 8.75 0.00 0.00 1.89
2795 2903 1.004610 CTCATTCGCGCACAGGTAATG 60.005 52.381 8.75 4.52 0.00 1.90
2796 2904 0.027979 CATTCGCGCACAGGTAATGG 59.972 55.000 8.75 0.00 0.00 3.16
2797 2905 0.392461 ATTCGCGCACAGGTAATGGT 60.392 50.000 8.75 0.00 0.00 3.55
2798 2906 0.604243 TTCGCGCACAGGTAATGGTT 60.604 50.000 8.75 0.00 0.00 3.67
2815 2923 3.297830 GGTTTGGCACCTTGTGAATAC 57.702 47.619 0.00 0.00 43.29 1.89
2816 2924 2.890945 GGTTTGGCACCTTGTGAATACT 59.109 45.455 0.00 0.00 43.29 2.12
2817 2925 3.057526 GGTTTGGCACCTTGTGAATACTC 60.058 47.826 0.00 0.00 43.29 2.59
2818 2926 2.489938 TGGCACCTTGTGAATACTCC 57.510 50.000 0.00 0.00 35.23 3.85
2819 2927 1.004277 TGGCACCTTGTGAATACTCCC 59.996 52.381 0.00 0.00 35.23 4.30
2820 2928 1.282157 GGCACCTTGTGAATACTCCCT 59.718 52.381 0.00 0.00 35.23 4.20
2821 2929 2.633488 GCACCTTGTGAATACTCCCTC 58.367 52.381 0.00 0.00 35.23 4.30
2822 2930 2.237392 GCACCTTGTGAATACTCCCTCT 59.763 50.000 0.00 0.00 35.23 3.69
2823 2931 3.866651 CACCTTGTGAATACTCCCTCTG 58.133 50.000 0.00 0.00 35.23 3.35
2824 2932 3.261897 CACCTTGTGAATACTCCCTCTGT 59.738 47.826 0.00 0.00 35.23 3.41
2825 2933 3.910627 ACCTTGTGAATACTCCCTCTGTT 59.089 43.478 0.00 0.00 0.00 3.16
2826 2934 4.020128 ACCTTGTGAATACTCCCTCTGTTC 60.020 45.833 0.00 0.00 0.00 3.18
2827 2935 4.223923 CCTTGTGAATACTCCCTCTGTTCT 59.776 45.833 0.00 0.00 0.00 3.01
2828 2936 4.808414 TGTGAATACTCCCTCTGTTCTG 57.192 45.455 0.00 0.00 0.00 3.02
2829 2937 4.416516 TGTGAATACTCCCTCTGTTCTGA 58.583 43.478 0.00 0.00 0.00 3.27
2830 2938 4.838423 TGTGAATACTCCCTCTGTTCTGAA 59.162 41.667 0.00 0.00 0.00 3.02
2831 2939 5.485353 TGTGAATACTCCCTCTGTTCTGAAT 59.515 40.000 0.00 0.00 0.00 2.57
2832 2940 6.013379 TGTGAATACTCCCTCTGTTCTGAATT 60.013 38.462 0.00 0.00 0.00 2.17
2833 2941 7.180229 TGTGAATACTCCCTCTGTTCTGAATTA 59.820 37.037 0.00 0.00 0.00 1.40
2834 2942 7.492994 GTGAATACTCCCTCTGTTCTGAATTAC 59.507 40.741 0.00 0.00 0.00 1.89
2835 2943 7.400339 TGAATACTCCCTCTGTTCTGAATTACT 59.600 37.037 0.00 0.00 0.00 2.24
2836 2944 7.741554 ATACTCCCTCTGTTCTGAATTACTT 57.258 36.000 0.00 0.00 0.00 2.24
2837 2945 5.799213 ACTCCCTCTGTTCTGAATTACTTG 58.201 41.667 0.00 0.00 0.00 3.16
2838 2946 5.308237 ACTCCCTCTGTTCTGAATTACTTGT 59.692 40.000 0.00 0.00 0.00 3.16
2839 2947 5.794894 TCCCTCTGTTCTGAATTACTTGTC 58.205 41.667 0.00 0.00 0.00 3.18
2840 2948 4.627467 CCCTCTGTTCTGAATTACTTGTCG 59.373 45.833 0.00 0.00 0.00 4.35
2841 2949 4.092091 CCTCTGTTCTGAATTACTTGTCGC 59.908 45.833 0.00 0.00 0.00 5.19
2842 2950 4.627058 TCTGTTCTGAATTACTTGTCGCA 58.373 39.130 0.00 0.00 0.00 5.10
2843 2951 4.686091 TCTGTTCTGAATTACTTGTCGCAG 59.314 41.667 0.00 0.00 0.00 5.18
2844 2952 3.745975 TGTTCTGAATTACTTGTCGCAGG 59.254 43.478 0.00 0.00 0.00 4.85
2845 2953 3.678056 TCTGAATTACTTGTCGCAGGT 57.322 42.857 0.00 0.91 0.00 4.00
2846 2954 4.794278 TCTGAATTACTTGTCGCAGGTA 57.206 40.909 0.00 0.00 0.00 3.08
2847 2955 5.339008 TCTGAATTACTTGTCGCAGGTAT 57.661 39.130 3.46 0.00 0.00 2.73
2848 2956 5.109210 TCTGAATTACTTGTCGCAGGTATG 58.891 41.667 3.46 0.00 0.00 2.39
2849 2957 4.188462 TGAATTACTTGTCGCAGGTATGG 58.812 43.478 3.46 0.00 0.00 2.74
2850 2958 4.081365 TGAATTACTTGTCGCAGGTATGGA 60.081 41.667 3.46 0.00 0.00 3.41
2851 2959 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
2852 2960 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
2853 2961 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
2854 2962 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
2855 2963 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
2856 2964 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
2857 2965 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
2858 2966 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
2859 2967 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
2860 2968 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
2861 2969 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
2862 2970 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
2863 2971 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
2864 2972 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
2865 2973 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
2866 2974 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
2894 3002 8.397575 AGTTCTAGATACATCTATTTCTGCGA 57.602 34.615 0.00 0.00 38.60 5.10
2895 3003 8.293867 AGTTCTAGATACATCTATTTCTGCGAC 58.706 37.037 0.00 0.00 38.60 5.19
2896 3004 6.832804 TCTAGATACATCTATTTCTGCGACG 58.167 40.000 0.00 0.00 38.60 5.12
2897 3005 5.690997 AGATACATCTATTTCTGCGACGA 57.309 39.130 0.00 0.00 34.85 4.20
2898 3006 6.073327 AGATACATCTATTTCTGCGACGAA 57.927 37.500 0.00 0.00 34.85 3.85
2899 3007 6.682746 AGATACATCTATTTCTGCGACGAAT 58.317 36.000 0.00 0.00 34.85 3.34
2900 3008 7.817641 AGATACATCTATTTCTGCGACGAATA 58.182 34.615 0.00 0.00 34.85 1.75
2901 3009 8.297426 AGATACATCTATTTCTGCGACGAATAA 58.703 33.333 0.00 0.00 34.85 1.40
2902 3010 8.988064 ATACATCTATTTCTGCGACGAATAAT 57.012 30.769 0.00 0.00 0.00 1.28
2903 3011 7.715265 ACATCTATTTCTGCGACGAATAATT 57.285 32.000 0.00 0.00 0.00 1.40
2904 3012 8.142994 ACATCTATTTCTGCGACGAATAATTT 57.857 30.769 0.00 0.00 0.00 1.82
2905 3013 8.064222 ACATCTATTTCTGCGACGAATAATTTG 58.936 33.333 0.00 0.00 0.00 2.32
2906 3014 7.764695 TCTATTTCTGCGACGAATAATTTGA 57.235 32.000 0.00 0.00 0.00 2.69
2907 3015 8.192068 TCTATTTCTGCGACGAATAATTTGAA 57.808 30.769 0.00 0.00 0.00 2.69
2908 3016 8.661257 TCTATTTCTGCGACGAATAATTTGAAA 58.339 29.630 0.00 0.00 0.00 2.69
2909 3017 6.904954 TTTCTGCGACGAATAATTTGAAAC 57.095 33.333 0.00 0.00 0.00 2.78
2910 3018 4.634000 TCTGCGACGAATAATTTGAAACG 58.366 39.130 0.00 0.00 0.00 3.60
2911 3019 3.738399 TGCGACGAATAATTTGAAACGG 58.262 40.909 0.00 0.00 0.00 4.44
2912 3020 3.432592 TGCGACGAATAATTTGAAACGGA 59.567 39.130 0.00 0.00 0.00 4.69
2913 3021 4.019867 GCGACGAATAATTTGAAACGGAG 58.980 43.478 0.00 0.00 0.00 4.63
2914 3022 4.574759 CGACGAATAATTTGAAACGGAGG 58.425 43.478 0.00 0.00 0.00 4.30
2915 3023 4.493545 CGACGAATAATTTGAAACGGAGGG 60.494 45.833 0.00 0.00 0.00 4.30
2916 3024 4.581868 ACGAATAATTTGAAACGGAGGGA 58.418 39.130 0.00 0.00 0.00 4.20
2917 3025 4.634443 ACGAATAATTTGAAACGGAGGGAG 59.366 41.667 0.00 0.00 0.00 4.30
2934 3042 0.173708 GAGTAGAAGTGAGGCGGTGG 59.826 60.000 0.00 0.00 0.00 4.61
2935 3043 0.542232 AGTAGAAGTGAGGCGGTGGT 60.542 55.000 0.00 0.00 0.00 4.16
2936 3044 0.389948 GTAGAAGTGAGGCGGTGGTG 60.390 60.000 0.00 0.00 0.00 4.17
2937 3045 1.541310 TAGAAGTGAGGCGGTGGTGG 61.541 60.000 0.00 0.00 0.00 4.61
2938 3046 3.168528 AAGTGAGGCGGTGGTGGT 61.169 61.111 0.00 0.00 0.00 4.16
2939 3047 2.676163 GAAGTGAGGCGGTGGTGGTT 62.676 60.000 0.00 0.00 0.00 3.67
2940 3048 2.668550 GTGAGGCGGTGGTGGTTC 60.669 66.667 0.00 0.00 0.00 3.62
2941 3049 2.847234 TGAGGCGGTGGTGGTTCT 60.847 61.111 0.00 0.00 0.00 3.01
2942 3050 1.534476 TGAGGCGGTGGTGGTTCTA 60.534 57.895 0.00 0.00 0.00 2.10
2943 3051 1.218316 GAGGCGGTGGTGGTTCTAG 59.782 63.158 0.00 0.00 0.00 2.43
2944 3052 1.229082 AGGCGGTGGTGGTTCTAGA 60.229 57.895 0.00 0.00 0.00 2.43
2945 3053 0.617820 AGGCGGTGGTGGTTCTAGAT 60.618 55.000 0.00 0.00 0.00 1.98
2946 3054 0.179081 GGCGGTGGTGGTTCTAGATC 60.179 60.000 0.00 0.00 0.00 2.75
2947 3055 0.179081 GCGGTGGTGGTTCTAGATCC 60.179 60.000 12.29 12.29 0.00 3.36
2948 3056 1.191535 CGGTGGTGGTTCTAGATCCA 58.808 55.000 17.08 17.08 0.00 3.41
2949 3057 1.137086 CGGTGGTGGTTCTAGATCCAG 59.863 57.143 20.70 7.12 34.16 3.86
2950 3058 1.486726 GGTGGTGGTTCTAGATCCAGG 59.513 57.143 20.70 0.00 34.16 4.45
2951 3059 1.486726 GTGGTGGTTCTAGATCCAGGG 59.513 57.143 20.70 0.00 34.16 4.45
2952 3060 1.080498 TGGTGGTTCTAGATCCAGGGT 59.920 52.381 20.70 0.00 34.16 4.34
2953 3061 1.486726 GGTGGTTCTAGATCCAGGGTG 59.513 57.143 20.70 0.00 34.16 4.61
2954 3062 2.188817 GTGGTTCTAGATCCAGGGTGT 58.811 52.381 20.70 0.00 34.16 4.16
2955 3063 2.572104 GTGGTTCTAGATCCAGGGTGTT 59.428 50.000 20.70 0.00 34.16 3.32
2956 3064 3.009143 GTGGTTCTAGATCCAGGGTGTTT 59.991 47.826 20.70 0.00 34.16 2.83
2957 3065 3.009033 TGGTTCTAGATCCAGGGTGTTTG 59.991 47.826 17.08 0.00 0.00 2.93
2958 3066 3.010420 GTTCTAGATCCAGGGTGTTTGC 58.990 50.000 0.00 0.00 0.00 3.68
2959 3067 2.551270 TCTAGATCCAGGGTGTTTGCT 58.449 47.619 0.00 0.00 0.00 3.91
2960 3068 2.237143 TCTAGATCCAGGGTGTTTGCTG 59.763 50.000 0.00 0.00 0.00 4.41
2961 3069 0.038744 AGATCCAGGGTGTTTGCTGG 59.961 55.000 0.00 0.00 38.26 4.85
2962 3070 1.598701 GATCCAGGGTGTTTGCTGGC 61.599 60.000 0.00 0.00 36.94 4.85
2963 3071 3.673484 CCAGGGTGTTTGCTGGCG 61.673 66.667 0.00 0.00 0.00 5.69
2983 3091 2.253403 ATTTCGTCGCTCCCCTTCCC 62.253 60.000 0.00 0.00 0.00 3.97
3007 3115 2.604914 CCTATCATCGTATTGGCATCGC 59.395 50.000 0.00 0.00 0.00 4.58
3039 3149 2.766400 GCTCCGGTCTCTCGTCCAG 61.766 68.421 0.00 0.00 0.00 3.86
3042 3152 4.180946 CGGTCTCTCGTCCAGGCG 62.181 72.222 0.00 0.00 0.00 5.52
3043 3153 4.500116 GGTCTCTCGTCCAGGCGC 62.500 72.222 0.00 0.00 0.00 6.53
3050 3160 1.286354 CTCGTCCAGGCGCGTTTTAA 61.286 55.000 8.43 0.00 0.00 1.52
3060 3205 4.328983 CAGGCGCGTTTTAATCTTTAGAGA 59.671 41.667 8.43 0.00 36.09 3.10
3067 3212 7.801783 CGCGTTTTAATCTTTAGAGAGGTTTTT 59.198 33.333 0.00 0.00 34.85 1.94
3078 3223 4.720046 AGAGAGGTTTTTGAGTTTCCTCC 58.280 43.478 0.00 0.00 43.80 4.30
3091 3236 1.613317 TTCCTCCGCCGATGTCATGT 61.613 55.000 0.00 0.00 0.00 3.21
3092 3237 1.884464 CCTCCGCCGATGTCATGTG 60.884 63.158 0.00 0.00 0.00 3.21
3104 3285 1.202915 TGTCATGTGGTGGTGCTCATT 60.203 47.619 0.00 0.00 0.00 2.57
3119 3300 6.002704 GGTGCTCATTGGAATAATGATCTCT 58.997 40.000 3.12 0.00 36.23 3.10
3152 3333 0.105964 TGCTCGTTGTAGGTGTTGCT 59.894 50.000 0.00 0.00 0.00 3.91
3155 3336 0.466543 TCGTTGTAGGTGTTGCTGGT 59.533 50.000 0.00 0.00 0.00 4.00
3164 3345 3.414700 GTTGCTGGTGCCGACGAG 61.415 66.667 0.00 0.00 38.71 4.18
3170 3351 1.934220 CTGGTGCCGACGAGAGCTTA 61.934 60.000 0.00 0.00 29.61 3.09
3198 3387 0.944311 AAGCTGTCAGTGCGGTTACG 60.944 55.000 0.93 0.00 44.63 3.18
3224 3413 1.517694 GTTGCATCTTGGCATGGCG 60.518 57.895 15.27 0.90 44.48 5.69
3247 3441 2.169789 CGATGCTCTTGGAGTGCGG 61.170 63.158 0.00 0.00 37.52 5.69
3260 3454 4.758251 TGCGGCGGTGATGACTGG 62.758 66.667 9.78 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.265236 TAACGGCGAAACCCTAGGAA 58.735 50.000 16.62 0.00 33.26 3.36
1 2 1.137479 CATAACGGCGAAACCCTAGGA 59.863 52.381 16.62 0.00 33.26 2.94
2 3 1.578583 CATAACGGCGAAACCCTAGG 58.421 55.000 16.62 0.06 33.26 3.02
3 4 1.578583 CCATAACGGCGAAACCCTAG 58.421 55.000 16.62 0.00 33.26 3.02
4 5 0.178533 CCCATAACGGCGAAACCCTA 59.821 55.000 16.62 0.00 33.26 3.53
5 6 1.078001 CCCATAACGGCGAAACCCT 60.078 57.895 16.62 0.00 33.26 4.34
6 7 1.377594 ACCCATAACGGCGAAACCC 60.378 57.895 16.62 0.00 33.26 4.11
7 8 0.956902 ACACCCATAACGGCGAAACC 60.957 55.000 16.62 0.00 0.00 3.27
8 9 0.876399 AACACCCATAACGGCGAAAC 59.124 50.000 16.62 0.00 0.00 2.78
9 10 1.158434 GAACACCCATAACGGCGAAA 58.842 50.000 16.62 0.00 0.00 3.46
10 11 1.015085 CGAACACCCATAACGGCGAA 61.015 55.000 16.62 0.38 0.00 4.70
11 12 1.446445 CGAACACCCATAACGGCGA 60.446 57.895 16.62 0.00 0.00 5.54
12 13 1.418342 CTCGAACACCCATAACGGCG 61.418 60.000 4.80 4.80 0.00 6.46
13 14 0.108520 TCTCGAACACCCATAACGGC 60.109 55.000 0.00 0.00 0.00 5.68
14 15 2.201732 CATCTCGAACACCCATAACGG 58.798 52.381 0.00 0.00 0.00 4.44
15 16 2.603110 CACATCTCGAACACCCATAACG 59.397 50.000 0.00 0.00 0.00 3.18
16 17 3.596214 ACACATCTCGAACACCCATAAC 58.404 45.455 0.00 0.00 0.00 1.89
17 18 3.973206 ACACATCTCGAACACCCATAA 57.027 42.857 0.00 0.00 0.00 1.90
18 19 3.674955 CGAACACATCTCGAACACCCATA 60.675 47.826 0.00 0.00 38.61 2.74
19 20 2.699954 GAACACATCTCGAACACCCAT 58.300 47.619 0.00 0.00 0.00 4.00
20 21 1.604438 CGAACACATCTCGAACACCCA 60.604 52.381 0.00 0.00 38.61 4.51
21 22 1.068474 CGAACACATCTCGAACACCC 58.932 55.000 0.00 0.00 38.61 4.61
22 23 1.779569 ACGAACACATCTCGAACACC 58.220 50.000 0.00 0.00 39.60 4.16
23 24 3.854286 AAACGAACACATCTCGAACAC 57.146 42.857 0.00 0.00 39.60 3.32
24 25 3.545228 GCAAAACGAACACATCTCGAACA 60.545 43.478 0.00 0.00 39.60 3.18
25 26 2.964768 GCAAAACGAACACATCTCGAAC 59.035 45.455 0.00 0.00 39.60 3.95
26 27 2.869801 AGCAAAACGAACACATCTCGAA 59.130 40.909 0.00 0.00 39.60 3.71
27 28 2.479837 AGCAAAACGAACACATCTCGA 58.520 42.857 0.00 0.00 39.60 4.04
28 29 2.949714 AGCAAAACGAACACATCTCG 57.050 45.000 0.00 0.00 42.06 4.04
29 30 4.209452 TCAAGCAAAACGAACACATCTC 57.791 40.909 0.00 0.00 0.00 2.75
30 31 3.627577 ACTCAAGCAAAACGAACACATCT 59.372 39.130 0.00 0.00 0.00 2.90
31 32 3.952535 ACTCAAGCAAAACGAACACATC 58.047 40.909 0.00 0.00 0.00 3.06
32 33 3.243068 GGACTCAAGCAAAACGAACACAT 60.243 43.478 0.00 0.00 0.00 3.21
33 34 2.096819 GGACTCAAGCAAAACGAACACA 59.903 45.455 0.00 0.00 0.00 3.72
34 35 2.354821 AGGACTCAAGCAAAACGAACAC 59.645 45.455 0.00 0.00 0.00 3.32
35 36 2.639065 AGGACTCAAGCAAAACGAACA 58.361 42.857 0.00 0.00 0.00 3.18
36 37 3.692791 AAGGACTCAAGCAAAACGAAC 57.307 42.857 0.00 0.00 0.00 3.95
37 38 3.242608 CGAAAGGACTCAAGCAAAACGAA 60.243 43.478 0.00 0.00 0.00 3.85
38 39 2.286833 CGAAAGGACTCAAGCAAAACGA 59.713 45.455 0.00 0.00 0.00 3.85
39 40 2.031683 ACGAAAGGACTCAAGCAAAACG 59.968 45.455 0.00 0.00 0.00 3.60
40 41 3.064820 TGACGAAAGGACTCAAGCAAAAC 59.935 43.478 0.00 0.00 0.00 2.43
41 42 3.275143 TGACGAAAGGACTCAAGCAAAA 58.725 40.909 0.00 0.00 0.00 2.44
42 43 2.872245 CTGACGAAAGGACTCAAGCAAA 59.128 45.455 0.00 0.00 0.00 3.68
43 44 2.102420 TCTGACGAAAGGACTCAAGCAA 59.898 45.455 0.00 0.00 0.00 3.91
44 45 1.686587 TCTGACGAAAGGACTCAAGCA 59.313 47.619 0.00 0.00 0.00 3.91
45 46 2.440539 TCTGACGAAAGGACTCAAGC 57.559 50.000 0.00 0.00 0.00 4.01
46 47 2.670414 GCATCTGACGAAAGGACTCAAG 59.330 50.000 0.00 0.00 0.00 3.02
47 48 2.688507 GCATCTGACGAAAGGACTCAA 58.311 47.619 0.00 0.00 0.00 3.02
48 49 1.402852 CGCATCTGACGAAAGGACTCA 60.403 52.381 0.00 0.00 0.00 3.41
49 50 1.135373 TCGCATCTGACGAAAGGACTC 60.135 52.381 0.00 0.00 36.44 3.36
50 51 0.888619 TCGCATCTGACGAAAGGACT 59.111 50.000 0.00 0.00 36.44 3.85
51 52 1.272781 CTCGCATCTGACGAAAGGAC 58.727 55.000 0.00 0.00 39.39 3.85
52 53 0.173481 CCTCGCATCTGACGAAAGGA 59.827 55.000 0.00 0.00 39.39 3.36
53 54 0.807667 CCCTCGCATCTGACGAAAGG 60.808 60.000 0.00 0.00 39.39 3.11
54 55 0.173481 TCCCTCGCATCTGACGAAAG 59.827 55.000 0.00 0.00 39.39 2.62
55 56 0.173481 CTCCCTCGCATCTGACGAAA 59.827 55.000 0.00 0.00 39.39 3.46
56 57 1.809869 CTCCCTCGCATCTGACGAA 59.190 57.895 0.00 0.00 39.39 3.85
57 58 2.775856 GCTCCCTCGCATCTGACGA 61.776 63.158 0.00 0.00 38.02 4.20
58 59 2.279120 GCTCCCTCGCATCTGACG 60.279 66.667 0.00 0.00 0.00 4.35
59 60 2.279120 CGCTCCCTCGCATCTGAC 60.279 66.667 0.00 0.00 0.00 3.51
60 61 2.440247 TCGCTCCCTCGCATCTGA 60.440 61.111 0.00 0.00 0.00 3.27
61 62 2.027314 CTCGCTCCCTCGCATCTG 59.973 66.667 0.00 0.00 0.00 2.90
62 63 3.910490 GCTCGCTCCCTCGCATCT 61.910 66.667 0.00 0.00 0.00 2.90
63 64 4.959596 GGCTCGCTCCCTCGCATC 62.960 72.222 0.00 0.00 0.00 3.91
67 68 4.598894 CCATGGCTCGCTCCCTCG 62.599 72.222 0.00 0.00 0.00 4.63
68 69 4.247380 CCCATGGCTCGCTCCCTC 62.247 72.222 6.09 0.00 0.00 4.30
69 70 4.804420 TCCCATGGCTCGCTCCCT 62.804 66.667 6.09 0.00 0.00 4.20
70 71 4.554036 GTCCCATGGCTCGCTCCC 62.554 72.222 6.09 0.00 0.00 4.30
71 72 4.899239 CGTCCCATGGCTCGCTCC 62.899 72.222 6.09 0.00 0.00 4.70
72 73 3.838271 TCGTCCCATGGCTCGCTC 61.838 66.667 17.85 0.58 0.00 5.03
73 74 4.148825 GTCGTCCCATGGCTCGCT 62.149 66.667 17.85 0.00 0.00 4.93
76 77 2.363711 TATGCGTCGTCCCATGGCTC 62.364 60.000 6.09 0.00 0.00 4.70
77 78 2.369257 CTATGCGTCGTCCCATGGCT 62.369 60.000 6.09 0.00 0.00 4.75
78 79 1.956170 CTATGCGTCGTCCCATGGC 60.956 63.158 6.09 0.00 0.00 4.40
79 80 0.179084 AACTATGCGTCGTCCCATGG 60.179 55.000 4.14 4.14 0.00 3.66
80 81 1.327460 CAAACTATGCGTCGTCCCATG 59.673 52.381 0.00 0.00 0.00 3.66
81 82 1.066430 ACAAACTATGCGTCGTCCCAT 60.066 47.619 0.00 0.00 0.00 4.00
82 83 0.319083 ACAAACTATGCGTCGTCCCA 59.681 50.000 0.00 0.00 0.00 4.37
83 84 1.127951 CAACAAACTATGCGTCGTCCC 59.872 52.381 0.00 0.00 0.00 4.46
84 85 1.796459 ACAACAAACTATGCGTCGTCC 59.204 47.619 0.00 0.00 0.00 4.79
85 86 2.159881 GGACAACAAACTATGCGTCGTC 60.160 50.000 0.00 0.00 36.23 4.20
86 87 1.796459 GGACAACAAACTATGCGTCGT 59.204 47.619 0.00 0.00 36.23 4.34
87 88 1.127951 GGGACAACAAACTATGCGTCG 59.872 52.381 0.00 0.00 36.23 5.12
88 89 1.127951 CGGGACAACAAACTATGCGTC 59.872 52.381 0.00 0.00 35.20 5.19
89 90 1.153353 CGGGACAACAAACTATGCGT 58.847 50.000 0.00 0.00 0.00 5.24
90 91 1.136085 CACGGGACAACAAACTATGCG 60.136 52.381 0.00 0.00 0.00 4.73
91 92 2.147958 TCACGGGACAACAAACTATGC 58.852 47.619 0.00 0.00 0.00 3.14
92 93 4.093408 CAGATCACGGGACAACAAACTATG 59.907 45.833 0.00 0.00 0.00 2.23
93 94 4.253685 CAGATCACGGGACAACAAACTAT 58.746 43.478 0.00 0.00 0.00 2.12
94 95 3.556213 CCAGATCACGGGACAACAAACTA 60.556 47.826 0.00 0.00 33.26 2.24
95 96 2.494059 CAGATCACGGGACAACAAACT 58.506 47.619 0.00 0.00 0.00 2.66
96 97 1.535462 CCAGATCACGGGACAACAAAC 59.465 52.381 0.00 0.00 33.26 2.93
97 98 1.418264 TCCAGATCACGGGACAACAAA 59.582 47.619 0.00 0.00 35.60 2.83
98 99 1.052617 TCCAGATCACGGGACAACAA 58.947 50.000 0.00 0.00 35.60 2.83
99 100 1.066215 CATCCAGATCACGGGACAACA 60.066 52.381 0.00 0.00 42.55 3.33
100 101 1.656652 CATCCAGATCACGGGACAAC 58.343 55.000 0.00 0.00 42.55 3.32
101 102 0.107703 GCATCCAGATCACGGGACAA 60.108 55.000 0.00 0.00 42.55 3.18
102 103 1.522092 GCATCCAGATCACGGGACA 59.478 57.895 0.00 0.00 42.55 4.02
103 104 1.592669 CGCATCCAGATCACGGGAC 60.593 63.158 0.00 0.00 42.55 4.46
104 105 2.016393 GACGCATCCAGATCACGGGA 62.016 60.000 0.00 0.00 43.73 5.14
105 106 1.592669 GACGCATCCAGATCACGGG 60.593 63.158 0.00 0.00 0.00 5.28
106 107 1.592669 GGACGCATCCAGATCACGG 60.593 63.158 0.00 0.00 45.47 4.94
107 108 4.018609 GGACGCATCCAGATCACG 57.981 61.111 0.00 0.00 45.47 4.35
115 116 2.213499 CTTGAGGTAATGGACGCATCC 58.787 52.381 0.00 0.00 46.48 3.51
116 117 1.599542 GCTTGAGGTAATGGACGCATC 59.400 52.381 0.00 0.00 0.00 3.91
117 118 1.668419 GCTTGAGGTAATGGACGCAT 58.332 50.000 0.00 0.00 0.00 4.73
118 119 0.739462 CGCTTGAGGTAATGGACGCA 60.739 55.000 0.00 0.00 0.00 5.24
119 120 2.006772 CGCTTGAGGTAATGGACGC 58.993 57.895 0.00 0.00 0.00 5.19
120 121 0.739462 TGCGCTTGAGGTAATGGACG 60.739 55.000 9.73 0.00 0.00 4.79
121 122 1.009829 CTGCGCTTGAGGTAATGGAC 58.990 55.000 9.73 0.00 0.00 4.02
122 123 0.613260 ACTGCGCTTGAGGTAATGGA 59.387 50.000 9.73 0.00 0.00 3.41
123 124 1.453155 AACTGCGCTTGAGGTAATGG 58.547 50.000 9.73 0.00 0.00 3.16
124 125 2.609459 CCTAACTGCGCTTGAGGTAATG 59.391 50.000 9.73 0.00 0.00 1.90
125 126 2.236395 ACCTAACTGCGCTTGAGGTAAT 59.764 45.455 15.11 0.00 38.77 1.89
126 127 1.621814 ACCTAACTGCGCTTGAGGTAA 59.378 47.619 15.11 0.00 38.77 2.85
127 128 1.263356 ACCTAACTGCGCTTGAGGTA 58.737 50.000 15.11 4.04 38.77 3.08
128 129 0.396811 AACCTAACTGCGCTTGAGGT 59.603 50.000 9.73 10.99 42.41 3.85
129 130 1.523758 AAACCTAACTGCGCTTGAGG 58.476 50.000 9.73 10.28 0.00 3.86
130 131 4.154195 ACAATAAACCTAACTGCGCTTGAG 59.846 41.667 9.73 0.00 0.00 3.02
131 132 4.069304 ACAATAAACCTAACTGCGCTTGA 58.931 39.130 9.73 0.00 0.00 3.02
132 133 4.419522 ACAATAAACCTAACTGCGCTTG 57.580 40.909 9.73 3.92 0.00 4.01
133 134 4.517453 TCAACAATAAACCTAACTGCGCTT 59.483 37.500 9.73 0.00 0.00 4.68
134 135 4.069304 TCAACAATAAACCTAACTGCGCT 58.931 39.130 9.73 0.00 0.00 5.92
135 136 4.413495 TCAACAATAAACCTAACTGCGC 57.587 40.909 0.00 0.00 0.00 6.09
136 137 5.851177 CACTTCAACAATAAACCTAACTGCG 59.149 40.000 0.00 0.00 0.00 5.18
137 138 6.856426 GTCACTTCAACAATAAACCTAACTGC 59.144 38.462 0.00 0.00 0.00 4.40
138 139 8.154649 AGTCACTTCAACAATAAACCTAACTG 57.845 34.615 0.00 0.00 0.00 3.16
139 140 8.747538 AAGTCACTTCAACAATAAACCTAACT 57.252 30.769 0.00 0.00 0.00 2.24
140 141 9.447040 GAAAGTCACTTCAACAATAAACCTAAC 57.553 33.333 0.00 0.00 0.00 2.34
145 146 6.417930 GGCAGAAAGTCACTTCAACAATAAAC 59.582 38.462 0.00 0.00 0.00 2.01
148 149 5.239306 CAGGCAGAAAGTCACTTCAACAATA 59.761 40.000 0.00 0.00 0.00 1.90
153 154 1.949525 GCAGGCAGAAAGTCACTTCAA 59.050 47.619 0.00 0.00 0.00 2.69
155 156 1.534595 CAGCAGGCAGAAAGTCACTTC 59.465 52.381 0.00 0.00 0.00 3.01
156 157 1.133976 ACAGCAGGCAGAAAGTCACTT 60.134 47.619 0.00 0.00 0.00 3.16
162 163 0.236711 CACGAACAGCAGGCAGAAAG 59.763 55.000 0.00 0.00 0.00 2.62
164 165 0.601046 CTCACGAACAGCAGGCAGAA 60.601 55.000 0.00 0.00 0.00 3.02
203 204 0.530650 AGCGCATCTGTATTCGGTGG 60.531 55.000 11.47 0.00 31.35 4.61
218 219 2.010817 CCGAAAACTGCAACAGCGC 61.011 57.895 0.00 0.00 34.37 5.92
219 220 0.929824 CACCGAAAACTGCAACAGCG 60.930 55.000 0.00 0.00 34.37 5.18
227 228 2.711542 AGATTAGGCCACCGAAAACTG 58.288 47.619 5.01 0.00 0.00 3.16
233 234 2.994186 GGTAAAGATTAGGCCACCGA 57.006 50.000 5.01 0.00 0.00 4.69
237 238 1.279558 TGCACGGTAAAGATTAGGCCA 59.720 47.619 5.01 0.00 0.00 5.36
252 253 1.464608 CAAAGACCCATGTACTGCACG 59.535 52.381 0.00 0.00 0.00 5.34
258 259 4.556699 GCAGAAACACAAAGACCCATGTAC 60.557 45.833 0.00 0.00 0.00 2.90
259 260 3.568007 GCAGAAACACAAAGACCCATGTA 59.432 43.478 0.00 0.00 0.00 2.29
261 262 2.624838 AGCAGAAACACAAAGACCCATG 59.375 45.455 0.00 0.00 0.00 3.66
262 263 2.624838 CAGCAGAAACACAAAGACCCAT 59.375 45.455 0.00 0.00 0.00 4.00
265 266 1.269257 GGCAGCAGAAACACAAAGACC 60.269 52.381 0.00 0.00 0.00 3.85
266 267 1.405105 TGGCAGCAGAAACACAAAGAC 59.595 47.619 0.00 0.00 0.00 3.01
286 313 6.465894 GGCTGGATGATTATTGGGTAACTACT 60.466 42.308 0.00 0.00 0.00 2.57
289 316 4.416848 AGGCTGGATGATTATTGGGTAACT 59.583 41.667 0.00 0.00 0.00 2.24
315 342 9.997482 GAATAACACAACACCATAATCGTAAAT 57.003 29.630 0.00 0.00 0.00 1.40
316 343 9.221933 AGAATAACACAACACCATAATCGTAAA 57.778 29.630 0.00 0.00 0.00 2.01
317 344 8.780846 AGAATAACACAACACCATAATCGTAA 57.219 30.769 0.00 0.00 0.00 3.18
325 352 7.327214 ACAAACAAAGAATAACACAACACCAT 58.673 30.769 0.00 0.00 0.00 3.55
326 353 6.692486 ACAAACAAAGAATAACACAACACCA 58.308 32.000 0.00 0.00 0.00 4.17
351 378 5.105146 ACTTGTGCTCTGGATCCTACTTTAG 60.105 44.000 14.23 0.21 0.00 1.85
562 592 9.352784 GCTCATTATCAAATAGCTACTGTCTAG 57.647 37.037 0.00 0.00 0.00 2.43
576 606 6.490040 GGCCCAATAGTAAGCTCATTATCAAA 59.510 38.462 0.00 0.00 0.00 2.69
585 615 2.969262 AGAGAGGCCCAATAGTAAGCTC 59.031 50.000 0.00 0.00 0.00 4.09
594 624 1.366319 ACTTGACAGAGAGGCCCAAT 58.634 50.000 0.00 0.00 0.00 3.16
603 633 3.809832 CAGGTTGTGGTAACTTGACAGAG 59.190 47.826 0.00 0.00 37.61 3.35
604 634 3.199071 ACAGGTTGTGGTAACTTGACAGA 59.801 43.478 8.58 0.00 32.43 3.41
605 635 3.541632 ACAGGTTGTGGTAACTTGACAG 58.458 45.455 8.58 0.00 32.43 3.51
606 636 3.637911 ACAGGTTGTGGTAACTTGACA 57.362 42.857 8.58 0.00 32.43 3.58
607 637 4.062991 CCTACAGGTTGTGGTAACTTGAC 58.937 47.826 8.58 0.00 32.43 3.18
608 638 4.345859 CCTACAGGTTGTGGTAACTTGA 57.654 45.455 8.58 0.00 32.43 3.02
692 732 7.978414 TGTTTCTCTTGCACAACAAAAATATGA 59.022 29.630 0.00 0.00 37.96 2.15
751 791 1.801178 GTGACTACTGGCTGCAGAAAC 59.199 52.381 20.43 7.25 0.00 2.78
770 810 0.253610 TGAAGTGTGTGGTTTCGGGT 59.746 50.000 0.00 0.00 0.00 5.28
776 816 5.680619 TCTTTCATACTGAAGTGTGTGGTT 58.319 37.500 7.03 0.00 37.70 3.67
788 828 8.598924 GTGTACTCATGTTCATCTTTCATACTG 58.401 37.037 0.00 0.00 0.00 2.74
808 848 4.825085 CCAACAGGGTGTAAATTGTGTACT 59.175 41.667 0.00 0.00 0.00 2.73
826 866 7.015098 ACAATCATGAAAACCTCATAACCAACA 59.985 33.333 0.00 0.00 43.28 3.33
827 867 7.329226 CACAATCATGAAAACCTCATAACCAAC 59.671 37.037 0.00 0.00 43.28 3.77
828 868 7.377398 CACAATCATGAAAACCTCATAACCAA 58.623 34.615 0.00 0.00 43.28 3.67
844 889 3.646611 TGACCACAAAGCACAATCATG 57.353 42.857 0.00 0.00 0.00 3.07
911 958 9.462606 AACACTTAATAAGGACATAAAGGAAGG 57.537 33.333 4.92 0.00 0.00 3.46
915 966 8.281212 AGCAACACTTAATAAGGACATAAAGG 57.719 34.615 4.92 0.00 0.00 3.11
924 975 7.370383 ACAAACATGAGCAACACTTAATAAGG 58.630 34.615 0.00 0.00 0.00 2.69
1047 1100 8.958506 AGGTGTCACTACTATCAAACTAAGTAG 58.041 37.037 2.35 7.09 45.33 2.57
1069 1122 6.148811 ACAATTGTAAAACCATACTCGAGGTG 59.851 38.462 18.41 14.58 38.37 4.00
1079 1132 9.528018 CACTTAAGACAACAATTGTAAAACCAT 57.472 29.630 12.39 0.00 45.52 3.55
1086 1139 7.561021 TTGAGCACTTAAGACAACAATTGTA 57.439 32.000 12.39 0.00 45.52 2.41
1088 1141 7.935338 ATTTGAGCACTTAAGACAACAATTG 57.065 32.000 10.09 3.24 0.00 2.32
1089 1142 7.981225 ACAATTTGAGCACTTAAGACAACAATT 59.019 29.630 10.09 3.92 0.00 2.32
1090 1143 7.491682 ACAATTTGAGCACTTAAGACAACAAT 58.508 30.769 10.09 0.00 0.00 2.71
1091 1144 6.862209 ACAATTTGAGCACTTAAGACAACAA 58.138 32.000 10.09 7.51 0.00 2.83
1092 1145 6.449635 ACAATTTGAGCACTTAAGACAACA 57.550 33.333 10.09 1.61 0.00 3.33
1093 1146 6.751888 ACAACAATTTGAGCACTTAAGACAAC 59.248 34.615 10.09 0.00 36.48 3.32
1094 1147 6.862209 ACAACAATTTGAGCACTTAAGACAA 58.138 32.000 10.09 7.18 36.48 3.18
1095 1148 6.449635 ACAACAATTTGAGCACTTAAGACA 57.550 33.333 10.09 1.26 36.48 3.41
1096 1149 7.487829 TGAAACAACAATTTGAGCACTTAAGAC 59.512 33.333 10.09 0.55 36.48 3.01
1097 1150 7.542890 TGAAACAACAATTTGAGCACTTAAGA 58.457 30.769 10.09 0.00 36.48 2.10
1098 1151 7.754069 TGAAACAACAATTTGAGCACTTAAG 57.246 32.000 2.79 0.00 36.48 1.85
1099 1152 8.715191 AATGAAACAACAATTTGAGCACTTAA 57.285 26.923 2.79 0.00 36.48 1.85
1100 1153 8.602328 CAAATGAAACAACAATTTGAGCACTTA 58.398 29.630 2.79 0.00 36.48 2.24
1101 1154 7.119553 ACAAATGAAACAACAATTTGAGCACTT 59.880 29.630 12.80 0.00 36.43 3.16
1319 1372 8.177663 CAGCACAAAATATCTGAATCGTTAGTT 58.822 33.333 0.00 0.00 0.00 2.24
1484 1583 8.734386 CCTAATTCTAGCAACATTTCTTTGTCT 58.266 33.333 0.00 0.00 0.00 3.41
1486 1585 8.409358 ACCTAATTCTAGCAACATTTCTTTGT 57.591 30.769 0.00 0.00 0.00 2.83
1510 1609 7.558137 CAAATTACAAACAGAGTTCATGCAAC 58.442 34.615 0.00 0.00 34.86 4.17
1657 1760 5.694231 TGCATAAATACAGGCATGCTAAG 57.306 39.130 18.92 10.17 43.30 2.18
1703 1806 2.092538 AGGAAGTTGCAGATCATGAGGG 60.093 50.000 0.09 0.00 0.00 4.30
1713 1816 1.406539 AGCAAACACAGGAAGTTGCAG 59.593 47.619 9.62 0.00 0.00 4.41
1804 1907 1.825090 TGTCCTGCATTGACACATCC 58.175 50.000 13.51 0.00 37.80 3.51
1991 2095 3.804325 CGTAGACACAATGCTGGAATAGG 59.196 47.826 0.00 0.00 0.00 2.57
1994 2098 2.009774 GCGTAGACACAATGCTGGAAT 58.990 47.619 0.00 0.00 0.00 3.01
2013 2117 4.419522 TTTCGCAACAGAAGATTTAGGC 57.580 40.909 0.00 0.00 0.00 3.93
2042 2146 5.365021 ACAGCTGCTAGAATATCCAAAGT 57.635 39.130 15.27 0.00 0.00 2.66
2086 2190 6.752285 TGATGAATCAAGGGTGAGATGATA 57.248 37.500 0.00 0.00 37.14 2.15
2094 2198 3.193903 TGCAACATGATGAATCAAGGGTG 59.806 43.478 7.22 8.30 40.69 4.61
2133 2237 5.350504 TCTCATCCTTGGTCTTCTTGATC 57.649 43.478 0.00 0.00 0.00 2.92
2274 2378 1.722464 TGGCGTAATCGACTTTCAACG 59.278 47.619 0.00 0.00 46.49 4.10
2275 2379 3.799137 TTGGCGTAATCGACTTTCAAC 57.201 42.857 0.00 0.00 46.49 3.18
2276 2380 5.290158 GTCTATTGGCGTAATCGACTTTCAA 59.710 40.000 10.03 0.00 46.49 2.69
2277 2381 4.802039 GTCTATTGGCGTAATCGACTTTCA 59.198 41.667 10.03 0.00 46.49 2.69
2278 2382 4.802039 TGTCTATTGGCGTAATCGACTTTC 59.198 41.667 15.04 0.00 46.49 2.62
2279 2383 4.751060 TGTCTATTGGCGTAATCGACTTT 58.249 39.130 15.04 0.00 46.49 2.66
2280 2384 4.380841 TGTCTATTGGCGTAATCGACTT 57.619 40.909 15.04 0.00 46.49 3.01
2281 2385 4.585955 ATGTCTATTGGCGTAATCGACT 57.414 40.909 15.04 0.00 46.49 4.18
2282 2386 5.696822 TCTATGTCTATTGGCGTAATCGAC 58.303 41.667 10.25 10.25 46.54 4.20
2283 2387 5.472478 ACTCTATGTCTATTGGCGTAATCGA 59.528 40.000 0.00 0.00 39.71 3.59
2294 2398 4.163078 AGGCAGCACAACTCTATGTCTATT 59.837 41.667 0.00 0.00 0.00 1.73
2477 2581 1.267806 CGCCAGTTGCATGAGAAAACT 59.732 47.619 0.00 0.00 41.33 2.66
2481 2585 2.334946 GGCGCCAGTTGCATGAGAA 61.335 57.895 24.80 0.00 41.33 2.87
2482 2586 2.747460 GGCGCCAGTTGCATGAGA 60.747 61.111 24.80 0.00 41.33 3.27
2483 2587 2.537792 CTTGGCGCCAGTTGCATGAG 62.538 60.000 30.75 17.69 41.33 2.90
2485 2589 2.126228 CTTGGCGCCAGTTGCATG 60.126 61.111 30.75 10.86 41.33 4.06
2486 2590 3.376078 CCTTGGCGCCAGTTGCAT 61.376 61.111 30.75 0.00 41.33 3.96
2496 2600 1.097547 AAAGATCCATCGCCTTGGCG 61.098 55.000 26.01 26.01 36.66 5.69
2497 2601 1.967319 TAAAGATCCATCGCCTTGGC 58.033 50.000 0.75 0.75 36.66 4.52
2498 2602 4.256920 CCTATAAAGATCCATCGCCTTGG 58.743 47.826 0.00 0.00 38.18 3.61
2499 2603 4.256920 CCCTATAAAGATCCATCGCCTTG 58.743 47.826 0.00 0.00 0.00 3.61
2500 2604 3.910627 ACCCTATAAAGATCCATCGCCTT 59.089 43.478 0.00 0.00 0.00 4.35
2501 2605 3.521727 ACCCTATAAAGATCCATCGCCT 58.478 45.455 0.00 0.00 0.00 5.52
2505 2609 4.003648 CGGCAACCCTATAAAGATCCATC 58.996 47.826 0.00 0.00 0.00 3.51
2507 2611 2.775384 ACGGCAACCCTATAAAGATCCA 59.225 45.455 0.00 0.00 0.00 3.41
2509 2613 3.003378 GCAACGGCAACCCTATAAAGATC 59.997 47.826 0.00 0.00 40.72 2.75
2510 2614 2.949644 GCAACGGCAACCCTATAAAGAT 59.050 45.455 0.00 0.00 40.72 2.40
2512 2616 2.354821 GAGCAACGGCAACCCTATAAAG 59.645 50.000 0.00 0.00 44.61 1.85
2513 2617 2.026636 AGAGCAACGGCAACCCTATAAA 60.027 45.455 0.00 0.00 44.61 1.40
2514 2618 1.557832 AGAGCAACGGCAACCCTATAA 59.442 47.619 0.00 0.00 44.61 0.98
2515 2619 1.134521 CAGAGCAACGGCAACCCTATA 60.135 52.381 0.00 0.00 44.61 1.31
2516 2620 0.392998 CAGAGCAACGGCAACCCTAT 60.393 55.000 0.00 0.00 44.61 2.57
2517 2621 1.003839 CAGAGCAACGGCAACCCTA 60.004 57.895 0.00 0.00 44.61 3.53
2518 2622 1.764571 TACAGAGCAACGGCAACCCT 61.765 55.000 0.00 0.00 44.61 4.34
2519 2623 1.298859 CTACAGAGCAACGGCAACCC 61.299 60.000 0.00 0.00 44.61 4.11
2521 2625 0.602905 ACCTACAGAGCAACGGCAAC 60.603 55.000 0.00 0.00 44.61 4.17
2527 2635 2.100087 GCTAGAGGACCTACAGAGCAAC 59.900 54.545 0.00 0.00 0.00 4.17
2531 2639 3.569194 TCAGCTAGAGGACCTACAGAG 57.431 52.381 0.00 0.00 0.00 3.35
2535 2643 8.817092 ATAGAATAATCAGCTAGAGGACCTAC 57.183 38.462 0.00 0.00 0.00 3.18
2540 2648 9.184523 GAAGCTATAGAATAATCAGCTAGAGGA 57.815 37.037 3.21 0.00 41.58 3.71
2541 2649 9.189156 AGAAGCTATAGAATAATCAGCTAGAGG 57.811 37.037 3.21 0.00 41.58 3.69
2558 2666 8.735315 CAGCTATAGCAAGACTTAGAAGCTATA 58.265 37.037 26.07 17.48 44.22 1.31
2559 2667 7.450014 TCAGCTATAGCAAGACTTAGAAGCTAT 59.550 37.037 26.07 17.21 46.70 2.97
2560 2668 6.773200 TCAGCTATAGCAAGACTTAGAAGCTA 59.227 38.462 26.07 7.26 45.16 3.32
2561 2669 5.596361 TCAGCTATAGCAAGACTTAGAAGCT 59.404 40.000 26.07 0.00 45.16 3.74
2562 2670 5.837437 TCAGCTATAGCAAGACTTAGAAGC 58.163 41.667 26.07 0.00 45.16 3.86
2563 2671 8.359642 AGAATCAGCTATAGCAAGACTTAGAAG 58.640 37.037 26.07 2.16 45.16 2.85
2564 2672 8.243961 AGAATCAGCTATAGCAAGACTTAGAA 57.756 34.615 26.07 1.84 45.16 2.10
2565 2673 7.831691 AGAATCAGCTATAGCAAGACTTAGA 57.168 36.000 26.07 10.57 45.16 2.10
2566 2674 9.624697 CTTAGAATCAGCTATAGCAAGACTTAG 57.375 37.037 26.07 15.01 45.16 2.18
2567 2675 9.355916 TCTTAGAATCAGCTATAGCAAGACTTA 57.644 33.333 26.07 12.90 45.16 2.24
2568 2676 8.243961 TCTTAGAATCAGCTATAGCAAGACTT 57.756 34.615 26.07 16.79 45.16 3.01
2569 2677 7.831691 TCTTAGAATCAGCTATAGCAAGACT 57.168 36.000 26.07 17.58 45.16 3.24
2570 2678 8.141268 ACTTCTTAGAATCAGCTATAGCAAGAC 58.859 37.037 26.07 12.18 45.16 3.01
2571 2679 8.243961 ACTTCTTAGAATCAGCTATAGCAAGA 57.756 34.615 26.07 21.85 45.16 3.02
2572 2680 8.885494 AACTTCTTAGAATCAGCTATAGCAAG 57.115 34.615 26.07 17.54 45.16 4.01
2573 2681 7.928706 GGAACTTCTTAGAATCAGCTATAGCAA 59.071 37.037 26.07 14.21 45.16 3.91
2574 2682 7.288852 AGGAACTTCTTAGAATCAGCTATAGCA 59.711 37.037 26.07 7.38 38.97 3.49
2575 2683 7.598493 CAGGAACTTCTTAGAATCAGCTATAGC 59.402 40.741 17.33 17.33 34.60 2.97
2576 2684 8.087750 CCAGGAACTTCTTAGAATCAGCTATAG 58.912 40.741 0.00 0.00 34.60 1.31
2577 2685 7.565398 ACCAGGAACTTCTTAGAATCAGCTATA 59.435 37.037 0.00 0.00 34.60 1.31
2578 2686 6.385467 ACCAGGAACTTCTTAGAATCAGCTAT 59.615 38.462 0.00 0.00 34.60 2.97
2579 2687 5.721960 ACCAGGAACTTCTTAGAATCAGCTA 59.278 40.000 0.00 0.00 34.60 3.32
2580 2688 4.534103 ACCAGGAACTTCTTAGAATCAGCT 59.466 41.667 0.00 0.00 34.60 4.24
2584 2692 5.666462 GGAGACCAGGAACTTCTTAGAATC 58.334 45.833 0.00 0.00 34.60 2.52
2649 2757 4.766404 AGGTAGCAAGGTTTGATTTTCG 57.234 40.909 0.00 0.00 0.00 3.46
2663 2771 9.715119 AGGTATATGATCATACATAAGGTAGCA 57.285 33.333 17.60 0.00 36.53 3.49
2664 2772 9.973450 CAGGTATATGATCATACATAAGGTAGC 57.027 37.037 17.60 12.88 36.53 3.58
2698 2806 9.803507 TTGCTCCTATAAATCTCATTGATCATT 57.196 29.630 0.00 0.00 33.57 2.57
2699 2807 9.451002 CTTGCTCCTATAAATCTCATTGATCAT 57.549 33.333 0.00 0.00 33.57 2.45
2700 2808 7.881751 CCTTGCTCCTATAAATCTCATTGATCA 59.118 37.037 0.00 0.00 33.57 2.92
2701 2809 7.336427 CCCTTGCTCCTATAAATCTCATTGATC 59.664 40.741 0.00 0.00 33.57 2.92
2702 2810 7.173722 CCCTTGCTCCTATAAATCTCATTGAT 58.826 38.462 0.00 0.00 36.89 2.57
2703 2811 6.537355 CCCTTGCTCCTATAAATCTCATTGA 58.463 40.000 0.00 0.00 0.00 2.57
2749 2857 0.532115 AAACCAATCGATGCCCTTGC 59.468 50.000 0.00 0.00 38.26 4.01
2750 2858 1.818060 TGAAACCAATCGATGCCCTTG 59.182 47.619 0.00 0.00 0.00 3.61
2751 2859 1.818674 GTGAAACCAATCGATGCCCTT 59.181 47.619 0.00 0.00 0.00 3.95
2752 2860 1.463674 GTGAAACCAATCGATGCCCT 58.536 50.000 0.00 0.00 0.00 5.19
2765 2873 0.721718 CGCGAATGAGGAGGTGAAAC 59.278 55.000 0.00 0.00 0.00 2.78
2766 2874 1.019278 GCGCGAATGAGGAGGTGAAA 61.019 55.000 12.10 0.00 0.00 2.69
2767 2875 1.447838 GCGCGAATGAGGAGGTGAA 60.448 57.895 12.10 0.00 0.00 3.18
2768 2876 2.184322 GCGCGAATGAGGAGGTGA 59.816 61.111 12.10 0.00 0.00 4.02
2769 2877 2.125552 TGCGCGAATGAGGAGGTG 60.126 61.111 12.10 0.00 0.00 4.00
2770 2878 2.125512 GTGCGCGAATGAGGAGGT 60.126 61.111 12.10 0.00 0.00 3.85
2771 2879 2.125552 TGTGCGCGAATGAGGAGG 60.126 61.111 12.10 0.00 0.00 4.30
2772 2880 2.169789 CCTGTGCGCGAATGAGGAG 61.170 63.158 12.10 0.00 0.00 3.69
2773 2881 1.600511 TACCTGTGCGCGAATGAGGA 61.601 55.000 19.42 3.42 0.00 3.71
2774 2882 0.739462 TTACCTGTGCGCGAATGAGG 60.739 55.000 12.10 12.37 0.00 3.86
2775 2883 1.004610 CATTACCTGTGCGCGAATGAG 60.005 52.381 12.10 0.00 30.62 2.90
2776 2884 1.006086 CATTACCTGTGCGCGAATGA 58.994 50.000 12.10 0.00 30.62 2.57
2777 2885 0.027979 CCATTACCTGTGCGCGAATG 59.972 55.000 12.10 8.97 0.00 2.67
2778 2886 0.392461 ACCATTACCTGTGCGCGAAT 60.392 50.000 12.10 0.00 0.00 3.34
2779 2887 0.604243 AACCATTACCTGTGCGCGAA 60.604 50.000 12.10 0.00 0.00 4.70
2780 2888 0.604243 AAACCATTACCTGTGCGCGA 60.604 50.000 12.10 0.00 0.00 5.87
2781 2889 0.454285 CAAACCATTACCTGTGCGCG 60.454 55.000 0.00 0.00 0.00 6.86
2782 2890 0.109319 CCAAACCATTACCTGTGCGC 60.109 55.000 0.00 0.00 0.00 6.09
2783 2891 0.109319 GCCAAACCATTACCTGTGCG 60.109 55.000 0.00 0.00 0.00 5.34
2784 2892 0.965439 TGCCAAACCATTACCTGTGC 59.035 50.000 0.00 0.00 0.00 4.57
2785 2893 2.723124 GTGCCAAACCATTACCTGTG 57.277 50.000 0.00 0.00 0.00 3.66
2796 2904 3.057526 GGAGTATTCACAAGGTGCCAAAC 60.058 47.826 0.00 0.00 32.98 2.93
2797 2905 3.153919 GGAGTATTCACAAGGTGCCAAA 58.846 45.455 0.00 0.00 32.98 3.28
2798 2906 2.554344 GGGAGTATTCACAAGGTGCCAA 60.554 50.000 0.00 0.00 32.98 4.52
2805 2913 5.047021 TCAGAACAGAGGGAGTATTCACAAG 60.047 44.000 0.00 0.00 0.00 3.16
2813 2921 6.497259 ACAAGTAATTCAGAACAGAGGGAGTA 59.503 38.462 0.00 0.00 0.00 2.59
2814 2922 5.308237 ACAAGTAATTCAGAACAGAGGGAGT 59.692 40.000 0.00 0.00 0.00 3.85
2815 2923 5.799213 ACAAGTAATTCAGAACAGAGGGAG 58.201 41.667 0.00 0.00 0.00 4.30
2816 2924 5.566826 CGACAAGTAATTCAGAACAGAGGGA 60.567 44.000 0.00 0.00 0.00 4.20
2817 2925 4.627467 CGACAAGTAATTCAGAACAGAGGG 59.373 45.833 0.00 0.00 0.00 4.30
2818 2926 4.092091 GCGACAAGTAATTCAGAACAGAGG 59.908 45.833 0.00 0.00 0.00 3.69
2819 2927 4.686091 TGCGACAAGTAATTCAGAACAGAG 59.314 41.667 0.00 0.00 0.00 3.35
2820 2928 4.627058 TGCGACAAGTAATTCAGAACAGA 58.373 39.130 0.00 0.00 0.00 3.41
2821 2929 4.143030 CCTGCGACAAGTAATTCAGAACAG 60.143 45.833 0.00 0.00 0.00 3.16
2822 2930 3.745975 CCTGCGACAAGTAATTCAGAACA 59.254 43.478 0.00 0.00 0.00 3.18
2823 2931 3.746492 ACCTGCGACAAGTAATTCAGAAC 59.254 43.478 0.00 0.00 0.00 3.01
2824 2932 4.002906 ACCTGCGACAAGTAATTCAGAA 57.997 40.909 0.00 0.00 0.00 3.02
2825 2933 3.678056 ACCTGCGACAAGTAATTCAGA 57.322 42.857 0.00 0.00 0.00 3.27
2826 2934 4.271049 CCATACCTGCGACAAGTAATTCAG 59.729 45.833 0.00 0.00 0.00 3.02
2827 2935 4.081365 TCCATACCTGCGACAAGTAATTCA 60.081 41.667 0.00 0.00 0.00 2.57
2828 2936 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
2829 2937 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
2830 2938 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
2831 2939 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
2832 2940 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
2833 2941 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
2834 2942 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
2835 2943 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
2836 2944 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
2837 2945 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
2838 2946 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
2839 2947 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
2840 2948 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
2868 2976 9.503399 TCGCAGAAATAGATGTATCTAGAACTA 57.497 33.333 0.00 0.00 42.20 2.24
2869 2977 8.293867 GTCGCAGAAATAGATGTATCTAGAACT 58.706 37.037 0.00 4.12 39.84 3.01
2870 2978 7.269511 CGTCGCAGAAATAGATGTATCTAGAAC 59.730 40.741 0.00 0.00 39.84 3.01
2871 2979 7.172703 TCGTCGCAGAAATAGATGTATCTAGAA 59.827 37.037 0.00 0.00 39.84 2.10
2872 2980 6.649557 TCGTCGCAGAAATAGATGTATCTAGA 59.350 38.462 7.57 0.00 39.84 2.43
2873 2981 6.832804 TCGTCGCAGAAATAGATGTATCTAG 58.167 40.000 7.57 0.00 39.84 2.43
2874 2982 6.796705 TCGTCGCAGAAATAGATGTATCTA 57.203 37.500 4.22 4.22 40.45 1.98
2875 2983 5.690997 TCGTCGCAGAAATAGATGTATCT 57.309 39.130 0.00 0.00 39.69 1.98
2876 2984 6.936222 ATTCGTCGCAGAAATAGATGTATC 57.064 37.500 0.00 0.00 39.69 2.24
2877 2985 8.988064 ATTATTCGTCGCAGAAATAGATGTAT 57.012 30.769 0.00 0.00 39.69 2.29
2878 2986 8.812147 AATTATTCGTCGCAGAAATAGATGTA 57.188 30.769 0.00 0.00 39.69 2.29
2879 2987 7.715265 AATTATTCGTCGCAGAAATAGATGT 57.285 32.000 0.00 0.00 39.69 3.06
2880 2988 8.275632 TCAAATTATTCGTCGCAGAAATAGATG 58.724 33.333 0.00 0.00 39.69 2.90
2881 2989 8.365399 TCAAATTATTCGTCGCAGAAATAGAT 57.635 30.769 0.00 0.00 39.69 1.98
2882 2990 7.764695 TCAAATTATTCGTCGCAGAAATAGA 57.235 32.000 0.00 0.00 39.69 1.98
2883 2991 8.725046 GTTTCAAATTATTCGTCGCAGAAATAG 58.275 33.333 0.00 0.00 39.69 1.73
2884 2992 7.424167 CGTTTCAAATTATTCGTCGCAGAAATA 59.576 33.333 0.00 0.00 39.69 1.40
2885 2993 6.248420 CGTTTCAAATTATTCGTCGCAGAAAT 59.752 34.615 0.00 0.00 39.69 2.17
2886 2994 5.562248 CGTTTCAAATTATTCGTCGCAGAAA 59.438 36.000 0.00 0.00 39.69 2.52
2887 2995 5.076765 CGTTTCAAATTATTCGTCGCAGAA 58.923 37.500 0.00 0.00 39.69 3.02
2888 2996 4.434989 CCGTTTCAAATTATTCGTCGCAGA 60.435 41.667 0.00 0.00 0.00 4.26
2889 2997 3.778718 CCGTTTCAAATTATTCGTCGCAG 59.221 43.478 0.00 0.00 0.00 5.18
2890 2998 3.432592 TCCGTTTCAAATTATTCGTCGCA 59.567 39.130 0.00 0.00 0.00 5.10
2891 2999 3.993547 TCCGTTTCAAATTATTCGTCGC 58.006 40.909 0.00 0.00 0.00 5.19
2892 3000 4.493545 CCCTCCGTTTCAAATTATTCGTCG 60.494 45.833 0.00 0.00 0.00 5.12
2893 3001 4.632688 TCCCTCCGTTTCAAATTATTCGTC 59.367 41.667 0.00 0.00 0.00 4.20
2894 3002 4.581868 TCCCTCCGTTTCAAATTATTCGT 58.418 39.130 0.00 0.00 0.00 3.85
2895 3003 4.634443 ACTCCCTCCGTTTCAAATTATTCG 59.366 41.667 0.00 0.00 0.00 3.34
2896 3004 7.046033 TCTACTCCCTCCGTTTCAAATTATTC 58.954 38.462 0.00 0.00 0.00 1.75
2897 3005 6.954232 TCTACTCCCTCCGTTTCAAATTATT 58.046 36.000 0.00 0.00 0.00 1.40
2898 3006 6.555463 TCTACTCCCTCCGTTTCAAATTAT 57.445 37.500 0.00 0.00 0.00 1.28
2899 3007 6.013984 ACTTCTACTCCCTCCGTTTCAAATTA 60.014 38.462 0.00 0.00 0.00 1.40
2900 3008 4.903045 TCTACTCCCTCCGTTTCAAATT 57.097 40.909 0.00 0.00 0.00 1.82
2901 3009 4.286291 ACTTCTACTCCCTCCGTTTCAAAT 59.714 41.667 0.00 0.00 0.00 2.32
2902 3010 3.644738 ACTTCTACTCCCTCCGTTTCAAA 59.355 43.478 0.00 0.00 0.00 2.69
2903 3011 3.006537 CACTTCTACTCCCTCCGTTTCAA 59.993 47.826 0.00 0.00 0.00 2.69
2904 3012 2.561419 CACTTCTACTCCCTCCGTTTCA 59.439 50.000 0.00 0.00 0.00 2.69
2905 3013 2.824341 TCACTTCTACTCCCTCCGTTTC 59.176 50.000 0.00 0.00 0.00 2.78
2906 3014 2.826725 CTCACTTCTACTCCCTCCGTTT 59.173 50.000 0.00 0.00 0.00 3.60
2907 3015 2.448453 CTCACTTCTACTCCCTCCGTT 58.552 52.381 0.00 0.00 0.00 4.44
2908 3016 1.341187 CCTCACTTCTACTCCCTCCGT 60.341 57.143 0.00 0.00 0.00 4.69
2909 3017 1.394618 CCTCACTTCTACTCCCTCCG 58.605 60.000 0.00 0.00 0.00 4.63
2910 3018 1.116308 GCCTCACTTCTACTCCCTCC 58.884 60.000 0.00 0.00 0.00 4.30
2911 3019 0.741915 CGCCTCACTTCTACTCCCTC 59.258 60.000 0.00 0.00 0.00 4.30
2912 3020 0.684805 CCGCCTCACTTCTACTCCCT 60.685 60.000 0.00 0.00 0.00 4.20
2913 3021 0.971447 ACCGCCTCACTTCTACTCCC 60.971 60.000 0.00 0.00 0.00 4.30
2914 3022 0.173708 CACCGCCTCACTTCTACTCC 59.826 60.000 0.00 0.00 0.00 3.85
2915 3023 0.173708 CCACCGCCTCACTTCTACTC 59.826 60.000 0.00 0.00 0.00 2.59
2916 3024 0.542232 ACCACCGCCTCACTTCTACT 60.542 55.000 0.00 0.00 0.00 2.57
2917 3025 0.389948 CACCACCGCCTCACTTCTAC 60.390 60.000 0.00 0.00 0.00 2.59
2934 3042 2.188817 ACACCCTGGATCTAGAACCAC 58.811 52.381 17.26 0.00 32.44 4.16
2935 3043 2.642171 ACACCCTGGATCTAGAACCA 57.358 50.000 19.66 19.66 34.81 3.67
2936 3044 3.610911 CAAACACCCTGGATCTAGAACC 58.389 50.000 12.02 12.02 0.00 3.62
2937 3045 3.010420 GCAAACACCCTGGATCTAGAAC 58.990 50.000 7.81 0.00 0.00 3.01
2938 3046 2.912956 AGCAAACACCCTGGATCTAGAA 59.087 45.455 7.81 0.00 0.00 2.10
2939 3047 2.237143 CAGCAAACACCCTGGATCTAGA 59.763 50.000 7.81 0.00 0.00 2.43
2940 3048 2.636830 CAGCAAACACCCTGGATCTAG 58.363 52.381 0.00 0.00 0.00 2.43
2941 3049 2.787473 CAGCAAACACCCTGGATCTA 57.213 50.000 0.00 0.00 0.00 1.98
2942 3050 3.658398 CAGCAAACACCCTGGATCT 57.342 52.632 0.00 0.00 0.00 2.75
2947 3055 1.526575 AATCGCCAGCAAACACCCTG 61.527 55.000 0.00 0.00 0.00 4.45
2948 3056 0.827507 AAATCGCCAGCAAACACCCT 60.828 50.000 0.00 0.00 0.00 4.34
2949 3057 0.388520 GAAATCGCCAGCAAACACCC 60.389 55.000 0.00 0.00 0.00 4.61
2950 3058 0.729140 CGAAATCGCCAGCAAACACC 60.729 55.000 0.00 0.00 0.00 4.16
2951 3059 0.040425 ACGAAATCGCCAGCAAACAC 60.040 50.000 2.15 0.00 44.43 3.32
2952 3060 0.237235 GACGAAATCGCCAGCAAACA 59.763 50.000 2.15 0.00 44.43 2.83
2953 3061 0.789383 CGACGAAATCGCCAGCAAAC 60.789 55.000 2.15 0.00 45.52 2.93
2954 3062 1.495509 CGACGAAATCGCCAGCAAA 59.504 52.632 2.15 0.00 45.52 3.68
2955 3063 3.164576 CGACGAAATCGCCAGCAA 58.835 55.556 2.15 0.00 45.52 3.91
2963 3071 0.810426 GGAAGGGGAGCGACGAAATC 60.810 60.000 0.00 0.00 0.00 2.17
2983 3091 3.961480 TGCCAATACGATGATAGGAGG 57.039 47.619 0.00 0.00 0.00 4.30
2984 3092 4.108336 CGATGCCAATACGATGATAGGAG 58.892 47.826 0.00 0.00 0.00 3.69
3039 3149 4.260253 CCTCTCTAAAGATTAAAACGCGCC 60.260 45.833 5.73 0.00 0.00 6.53
3042 3152 8.902735 CAAAAACCTCTCTAAAGATTAAAACGC 58.097 33.333 0.00 0.00 0.00 4.84
3050 3160 8.221251 AGGAAACTCAAAAACCTCTCTAAAGAT 58.779 33.333 0.00 0.00 32.90 2.40
3078 3223 2.463620 CCACCACATGACATCGGCG 61.464 63.158 0.00 0.00 0.00 6.46
3091 3236 3.448093 TTATTCCAATGAGCACCACCA 57.552 42.857 0.00 0.00 0.00 4.17
3092 3237 3.953612 TCATTATTCCAATGAGCACCACC 59.046 43.478 0.00 0.00 33.20 4.61
3104 3285 3.007290 CGGGCTGAGAGATCATTATTCCA 59.993 47.826 0.00 0.00 0.00 3.53
3152 3333 1.320344 ATAAGCTCTCGTCGGCACCA 61.320 55.000 0.00 0.00 0.00 4.17
3155 3336 1.437573 CCATAAGCTCTCGTCGGCA 59.562 57.895 0.00 0.00 0.00 5.69
3164 3345 3.102090 GCTTGGACCCCATAAGCTC 57.898 57.895 6.96 0.00 42.55 4.09
3170 3351 1.136329 ACTGACAGCTTGGACCCCAT 61.136 55.000 1.25 0.00 31.53 4.00
3198 3387 1.133790 GCCAAGATGCAACACCAGATC 59.866 52.381 0.00 0.00 0.00 2.75
3224 3413 1.817099 CTCCAAGAGCATCGCCACC 60.817 63.158 0.00 0.00 42.67 4.61
3234 3423 4.379243 ACCGCCGCACTCCAAGAG 62.379 66.667 0.00 0.00 35.52 2.85
3235 3424 4.680237 CACCGCCGCACTCCAAGA 62.680 66.667 0.00 0.00 0.00 3.02
3236 3425 3.958147 ATCACCGCCGCACTCCAAG 62.958 63.158 0.00 0.00 0.00 3.61
3247 3441 3.490759 CGCACCAGTCATCACCGC 61.491 66.667 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.