Multiple sequence alignment - TraesCS3A01G337900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G337900 chr3A 100.000 5008 0 0 960 5967 584751920 584756927 0.000000e+00 9249.0
1 TraesCS3A01G337900 chr3A 100.000 690 0 0 1 690 584750961 584751650 0.000000e+00 1275.0
2 TraesCS3A01G337900 chr3A 85.714 161 19 3 2365 2522 584753274 584753433 3.700000e-37 167.0
3 TraesCS3A01G337900 chr3A 85.714 161 19 3 2314 2473 584753325 584753482 3.700000e-37 167.0
4 TraesCS3A01G337900 chr3D 94.711 5048 165 23 960 5967 443593150 443598135 0.000000e+00 7749.0
5 TraesCS3A01G337900 chr3D 85.714 161 19 3 2365 2522 443594516 443594675 3.700000e-37 167.0
6 TraesCS3A01G337900 chr3D 85.714 161 19 3 2314 2473 443594567 443594724 3.700000e-37 167.0
7 TraesCS3A01G337900 chr3D 76.000 175 30 6 216 382 534107960 534108130 4.960000e-11 80.5
8 TraesCS3A01G337900 chr3D 91.379 58 4 1 5385 5441 53613017 53613074 1.780000e-10 78.7
9 TraesCS3A01G337900 chr3D 97.297 37 1 0 400 436 443592861 443592897 4.990000e-06 63.9
10 TraesCS3A01G337900 chr3B 95.621 4430 164 16 960 5375 581655441 581659854 0.000000e+00 7079.0
11 TraesCS3A01G337900 chr3B 85.458 557 32 12 5439 5967 581659855 581660390 8.800000e-148 534.0
12 TraesCS3A01G337900 chr3B 85.401 274 30 8 140 406 581654854 581655124 5.890000e-70 276.0
13 TraesCS3A01G337900 chr3B 85.714 161 19 3 2365 2522 581656801 581656960 3.700000e-37 167.0
14 TraesCS3A01G337900 chr3B 85.714 161 19 3 2314 2473 581656852 581657009 3.700000e-37 167.0
15 TraesCS3A01G337900 chr7B 91.489 141 10 2 552 690 184195250 184195110 6.100000e-45 193.0
16 TraesCS3A01G337900 chr7B 77.315 216 44 2 172 383 104258209 104258423 8.120000e-24 122.0
17 TraesCS3A01G337900 chr5B 86.747 166 13 6 529 690 36444512 36444672 6.150000e-40 176.0
18 TraesCS3A01G337900 chr4B 87.857 140 13 4 552 690 543283591 543283455 1.720000e-35 161.0
19 TraesCS3A01G337900 chr4B 90.476 63 5 1 5374 5435 479678625 479678687 1.380000e-11 82.4
20 TraesCS3A01G337900 chr2D 86.620 142 13 6 529 665 391272849 391272709 1.040000e-32 152.0
21 TraesCS3A01G337900 chr1D 85.430 151 16 6 542 688 464256053 464256201 1.040000e-32 152.0
22 TraesCS3A01G337900 chr1D 87.500 120 13 2 5569 5687 107179894 107180012 2.900000e-28 137.0
23 TraesCS3A01G337900 chr2A 85.065 154 15 8 542 688 11996969 11997121 3.730000e-32 150.0
24 TraesCS3A01G337900 chr2A 85.616 146 12 7 547 690 750109792 750109930 1.730000e-30 145.0
25 TraesCS3A01G337900 chr2A 76.471 170 34 5 218 382 316593165 316593333 2.960000e-13 87.9
26 TraesCS3A01G337900 chr2A 94.340 53 3 0 5392 5444 622459473 622459421 1.380000e-11 82.4
27 TraesCS3A01G337900 chr2A 88.235 68 6 2 5369 5435 27422808 27422742 4.960000e-11 80.5
28 TraesCS3A01G337900 chr1A 84.967 153 15 8 542 688 508209946 508209796 1.340000e-31 148.0
29 TraesCS3A01G337900 chr7D 83.537 164 17 8 529 686 578033008 578033167 1.730000e-30 145.0
30 TraesCS3A01G337900 chr4A 87.156 109 13 1 2151 2258 619994598 619994490 8.120000e-24 122.0
31 TraesCS3A01G337900 chr4A 86.239 109 14 1 2151 2258 619749426 619749318 3.780000e-22 117.0
32 TraesCS3A01G337900 chrUn 95.946 74 3 0 453 526 189387329 189387256 2.920000e-23 121.0
33 TraesCS3A01G337900 chrUn 95.946 74 3 0 453 526 332083282 332083209 2.920000e-23 121.0
34 TraesCS3A01G337900 chrUn 95.946 74 3 0 453 526 332086102 332086029 2.920000e-23 121.0
35 TraesCS3A01G337900 chrUn 95.946 74 3 0 453 526 370539401 370539474 2.920000e-23 121.0
36 TraesCS3A01G337900 chrUn 95.946 74 3 0 453 526 444344197 444344124 2.920000e-23 121.0
37 TraesCS3A01G337900 chr5D 85.000 120 16 2 2140 2258 548667066 548666948 2.920000e-23 121.0
38 TraesCS3A01G337900 chr4D 95.946 74 3 0 453 526 123407691 123407618 2.920000e-23 121.0
39 TraesCS3A01G337900 chr4D 95.946 74 3 0 453 526 135003988 135004061 2.920000e-23 121.0
40 TraesCS3A01G337900 chr4D 95.946 74 3 0 453 526 241141011 241141084 2.920000e-23 121.0
41 TraesCS3A01G337900 chr4D 95.946 74 3 0 453 526 483698594 483698521 2.920000e-23 121.0
42 TraesCS3A01G337900 chr4D 91.228 57 3 2 5379 5435 5527969 5527915 6.410000e-10 76.8
43 TraesCS3A01G337900 chr6B 92.982 57 3 1 5379 5435 577364617 577364672 1.380000e-11 82.4
44 TraesCS3A01G337900 chr6B 88.333 60 7 0 5393 5452 518389475 518389416 8.300000e-09 73.1
45 TraesCS3A01G337900 chr7A 90.000 60 4 2 5378 5435 562894878 562894819 6.410000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G337900 chr3A 584750961 584756927 5966 False 2714.500 9249 92.8570 1 5967 4 chr3A.!!$F1 5966
1 TraesCS3A01G337900 chr3D 443592861 443598135 5274 False 2036.725 7749 90.8590 400 5967 4 chr3D.!!$F3 5567
2 TraesCS3A01G337900 chr3B 581654854 581660390 5536 False 1644.600 7079 87.5816 140 5967 5 chr3B.!!$F1 5827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 539 0.037790 AGAGCTGCTCGGTCAAAGAC 60.038 55.000 22.77 0.0 42.56 3.01 F
1261 1300 0.035056 CAATCAGTTCGGGGCCTTCT 60.035 55.000 0.84 0.0 0.00 2.85 F
1638 1688 1.873591 CCCACTAGCGGCATATTTCAC 59.126 52.381 1.45 0.0 0.00 3.18 F
2629 2681 1.349542 ATGCATAGGGGGCCGTGTTA 61.350 55.000 0.00 0.0 0.00 2.41 F
3448 3502 0.461693 GCATCTCTCCTGGTCTGTGC 60.462 60.000 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1600 1649 3.314913 GTGGGGGAAATTGCAACAAAAAG 59.685 43.478 0.00 0.0 0.00 2.27 R
2605 2657 1.531602 GGCCCCCTATGCATGTTCC 60.532 63.158 10.16 0.0 0.00 3.62 R
3423 3477 3.005684 CAGACCAGGAGAGATGCAGATAC 59.994 52.174 0.00 0.0 0.00 2.24 R
4547 4601 1.703513 GGTTGGTTCCCTACTCTTGGT 59.296 52.381 0.00 0.0 30.42 3.67 R
5235 5307 1.134995 GCCTATGCTGTTTTTCCTGCC 60.135 52.381 0.00 0.0 33.53 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.837291 GGCACAGGGGTTGCAACA 60.837 61.111 29.55 0.00 0.00 3.33
18 19 2.209315 GGCACAGGGGTTGCAACAT 61.209 57.895 29.55 13.10 0.00 2.71
19 20 1.290009 GCACAGGGGTTGCAACATC 59.710 57.895 29.55 20.17 0.00 3.06
20 21 1.966762 CACAGGGGTTGCAACATCC 59.033 57.895 29.55 26.92 0.00 3.51
21 22 0.540365 CACAGGGGTTGCAACATCCT 60.540 55.000 29.55 28.46 35.45 3.24
22 23 0.251341 ACAGGGGTTGCAACATCCTC 60.251 55.000 29.39 16.35 33.70 3.71
23 24 0.967380 CAGGGGTTGCAACATCCTCC 60.967 60.000 29.39 21.54 33.70 4.30
24 25 1.142688 AGGGGTTGCAACATCCTCCT 61.143 55.000 29.55 21.92 31.43 3.69
25 26 0.681243 GGGGTTGCAACATCCTCCTC 60.681 60.000 29.55 8.80 0.00 3.71
26 27 0.329596 GGGTTGCAACATCCTCCTCT 59.670 55.000 29.55 0.00 0.00 3.69
27 28 1.272147 GGGTTGCAACATCCTCCTCTT 60.272 52.381 29.55 0.00 0.00 2.85
28 29 2.087646 GGTTGCAACATCCTCCTCTTC 58.912 52.381 29.55 5.18 0.00 2.87
29 30 2.087646 GTTGCAACATCCTCCTCTTCC 58.912 52.381 24.52 0.00 0.00 3.46
30 31 1.361204 TGCAACATCCTCCTCTTCCA 58.639 50.000 0.00 0.00 0.00 3.53
31 32 1.003580 TGCAACATCCTCCTCTTCCAC 59.996 52.381 0.00 0.00 0.00 4.02
32 33 1.003580 GCAACATCCTCCTCTTCCACA 59.996 52.381 0.00 0.00 0.00 4.17
33 34 2.938756 GCAACATCCTCCTCTTCCACAG 60.939 54.545 0.00 0.00 0.00 3.66
34 35 0.908198 ACATCCTCCTCTTCCACAGC 59.092 55.000 0.00 0.00 0.00 4.40
35 36 0.179936 CATCCTCCTCTTCCACAGCC 59.820 60.000 0.00 0.00 0.00 4.85
36 37 1.333636 ATCCTCCTCTTCCACAGCCG 61.334 60.000 0.00 0.00 0.00 5.52
37 38 1.984570 CCTCCTCTTCCACAGCCGA 60.985 63.158 0.00 0.00 0.00 5.54
38 39 1.216710 CTCCTCTTCCACAGCCGAC 59.783 63.158 0.00 0.00 0.00 4.79
39 40 2.232298 CTCCTCTTCCACAGCCGACC 62.232 65.000 0.00 0.00 0.00 4.79
40 41 2.583441 CCTCTTCCACAGCCGACCA 61.583 63.158 0.00 0.00 0.00 4.02
41 42 1.079543 CTCTTCCACAGCCGACCAG 60.080 63.158 0.00 0.00 0.00 4.00
42 43 2.743928 CTTCCACAGCCGACCAGC 60.744 66.667 0.00 0.00 0.00 4.85
43 44 4.329545 TTCCACAGCCGACCAGCC 62.330 66.667 0.00 0.00 0.00 4.85
52 53 3.411517 CGACCAGCCCCCATCCTT 61.412 66.667 0.00 0.00 0.00 3.36
53 54 2.276740 GACCAGCCCCCATCCTTG 59.723 66.667 0.00 0.00 0.00 3.61
54 55 2.535317 ACCAGCCCCCATCCTTGT 60.535 61.111 0.00 0.00 0.00 3.16
55 56 2.276740 CCAGCCCCCATCCTTGTC 59.723 66.667 0.00 0.00 0.00 3.18
56 57 2.311854 CCAGCCCCCATCCTTGTCT 61.312 63.158 0.00 0.00 0.00 3.41
57 58 1.225704 CAGCCCCCATCCTTGTCTC 59.774 63.158 0.00 0.00 0.00 3.36
58 59 2.003548 AGCCCCCATCCTTGTCTCC 61.004 63.158 0.00 0.00 0.00 3.71
59 60 2.911143 CCCCCATCCTTGTCTCCG 59.089 66.667 0.00 0.00 0.00 4.63
60 61 2.190578 CCCCATCCTTGTCTCCGC 59.809 66.667 0.00 0.00 0.00 5.54
61 62 2.190578 CCCATCCTTGTCTCCGCC 59.809 66.667 0.00 0.00 0.00 6.13
62 63 2.190578 CCATCCTTGTCTCCGCCC 59.809 66.667 0.00 0.00 0.00 6.13
63 64 2.370445 CCATCCTTGTCTCCGCCCT 61.370 63.158 0.00 0.00 0.00 5.19
64 65 1.048724 CCATCCTTGTCTCCGCCCTA 61.049 60.000 0.00 0.00 0.00 3.53
65 66 0.390860 CATCCTTGTCTCCGCCCTAG 59.609 60.000 0.00 0.00 0.00 3.02
66 67 1.403687 ATCCTTGTCTCCGCCCTAGC 61.404 60.000 0.00 0.00 0.00 3.42
67 68 2.501610 CTTGTCTCCGCCCTAGCC 59.498 66.667 0.00 0.00 34.57 3.93
68 69 3.432051 CTTGTCTCCGCCCTAGCCG 62.432 68.421 0.00 0.00 34.57 5.52
89 90 3.866582 CTCCCAGCCCCGACCATC 61.867 72.222 0.00 0.00 0.00 3.51
90 91 4.731853 TCCCAGCCCCGACCATCA 62.732 66.667 0.00 0.00 0.00 3.07
91 92 3.492353 CCCAGCCCCGACCATCAT 61.492 66.667 0.00 0.00 0.00 2.45
92 93 2.203252 CCAGCCCCGACCATCATG 60.203 66.667 0.00 0.00 0.00 3.07
93 94 2.591753 CAGCCCCGACCATCATGT 59.408 61.111 0.00 0.00 0.00 3.21
94 95 1.820906 CAGCCCCGACCATCATGTG 60.821 63.158 0.00 0.00 0.00 3.21
95 96 1.995066 AGCCCCGACCATCATGTGA 60.995 57.895 0.00 0.00 0.00 3.58
96 97 1.149174 GCCCCGACCATCATGTGAT 59.851 57.895 0.00 0.00 34.56 3.06
97 98 0.886490 GCCCCGACCATCATGTGATC 60.886 60.000 0.00 0.00 31.21 2.92
98 99 0.761187 CCCCGACCATCATGTGATCT 59.239 55.000 0.00 0.00 31.21 2.75
99 100 1.541889 CCCCGACCATCATGTGATCTG 60.542 57.143 0.00 0.00 31.21 2.90
100 101 1.224075 CCGACCATCATGTGATCTGC 58.776 55.000 0.00 0.00 31.21 4.26
101 102 0.857287 CGACCATCATGTGATCTGCG 59.143 55.000 0.00 0.00 31.21 5.18
102 103 0.585357 GACCATCATGTGATCTGCGC 59.415 55.000 0.00 0.00 31.21 6.09
103 104 0.816825 ACCATCATGTGATCTGCGCC 60.817 55.000 4.18 0.00 31.21 6.53
104 105 1.568025 CATCATGTGATCTGCGCCG 59.432 57.895 4.18 0.00 31.21 6.46
105 106 1.596203 ATCATGTGATCTGCGCCGG 60.596 57.895 4.18 0.00 0.00 6.13
106 107 3.945434 CATGTGATCTGCGCCGGC 61.945 66.667 19.07 19.07 40.52 6.13
120 121 2.821366 CGGCCGAAGCAAGCTGAT 60.821 61.111 24.07 0.00 42.56 2.90
121 122 2.817423 CGGCCGAAGCAAGCTGATC 61.817 63.158 24.07 0.00 42.56 2.92
122 123 2.705826 GCCGAAGCAAGCTGATCG 59.294 61.111 8.71 8.71 39.53 3.69
123 124 1.811266 GCCGAAGCAAGCTGATCGA 60.811 57.895 15.48 0.00 39.53 3.59
124 125 2.002127 CCGAAGCAAGCTGATCGAC 58.998 57.895 15.48 0.00 37.48 4.20
125 126 0.737367 CCGAAGCAAGCTGATCGACA 60.737 55.000 15.48 0.00 37.48 4.35
137 138 2.962569 TCGACAGCGACCTCAAGG 59.037 61.111 0.00 0.00 42.51 3.61
192 193 4.219507 TGTTGCTTCTTTGGTCAAGTGAAA 59.780 37.500 0.00 0.00 33.66 2.69
196 197 7.106439 TGCTTCTTTGGTCAAGTGAAAAATA 57.894 32.000 0.00 0.00 33.66 1.40
201 202 8.243961 TCTTTGGTCAAGTGAAAAATATTGGA 57.756 30.769 0.00 0.00 33.66 3.53
214 215 4.519540 AATATTGGACACAAGTTGCACC 57.480 40.909 1.81 4.81 40.49 5.01
215 216 1.774110 ATTGGACACAAGTTGCACCA 58.226 45.000 1.81 7.42 40.49 4.17
219 220 1.455383 GACACAAGTTGCACCAGGGG 61.455 60.000 1.81 0.00 0.00 4.79
225 226 2.432510 CAAGTTGCACCAGGGGTAAAAA 59.567 45.455 0.00 0.00 32.11 1.94
233 234 4.560716 GCACCAGGGGTAAAAATGTCTTTC 60.561 45.833 0.00 0.00 32.11 2.62
242 243 4.568152 AAAAATGTCTTTCCAGGTGTCG 57.432 40.909 0.00 0.00 0.00 4.35
270 272 4.017499 ACACCCTTAGTAGGCAAAATGGAT 60.017 41.667 0.00 0.00 40.50 3.41
276 278 3.026694 AGTAGGCAAAATGGATGGAAGC 58.973 45.455 0.00 0.00 0.00 3.86
287 289 0.804989 GATGGAAGCGTCACAAAGGG 59.195 55.000 1.14 0.00 0.00 3.95
289 291 0.250295 TGGAAGCGTCACAAAGGGAG 60.250 55.000 1.14 0.00 0.00 4.30
292 294 1.166531 AAGCGTCACAAAGGGAGCAC 61.167 55.000 0.00 0.00 0.00 4.40
297 299 2.034558 CGTCACAAAGGGAGCACATTTT 59.965 45.455 0.00 0.00 0.00 1.82
298 300 3.252215 CGTCACAAAGGGAGCACATTTTA 59.748 43.478 0.00 0.00 0.00 1.52
299 301 4.082787 CGTCACAAAGGGAGCACATTTTAT 60.083 41.667 0.00 0.00 0.00 1.40
300 302 5.123186 CGTCACAAAGGGAGCACATTTTATA 59.877 40.000 0.00 0.00 0.00 0.98
307 309 4.949856 AGGGAGCACATTTTATACTTGGTG 59.050 41.667 0.00 0.00 0.00 4.17
340 342 5.468746 TGAAGAAATAGTTTTCCGGTGTCAG 59.531 40.000 0.00 0.00 41.86 3.51
348 350 2.471815 TTCCGGTGTCAGATAGGGAT 57.528 50.000 0.00 0.00 0.00 3.85
349 351 2.471815 TCCGGTGTCAGATAGGGATT 57.528 50.000 0.00 0.00 0.00 3.01
350 352 2.759355 TCCGGTGTCAGATAGGGATTT 58.241 47.619 0.00 0.00 0.00 2.17
351 353 3.112263 TCCGGTGTCAGATAGGGATTTT 58.888 45.455 0.00 0.00 0.00 1.82
352 354 3.521937 TCCGGTGTCAGATAGGGATTTTT 59.478 43.478 0.00 0.00 0.00 1.94
436 472 3.544834 CGCAAGAGCCAGATCAAAATACG 60.545 47.826 0.00 0.00 43.02 3.06
437 473 3.623060 GCAAGAGCCAGATCAAAATACGA 59.377 43.478 0.00 0.00 33.58 3.43
438 474 4.094887 GCAAGAGCCAGATCAAAATACGAA 59.905 41.667 0.00 0.00 33.58 3.85
439 475 5.391950 GCAAGAGCCAGATCAAAATACGAAA 60.392 40.000 0.00 0.00 33.58 3.46
440 476 6.253746 CAAGAGCCAGATCAAAATACGAAAG 58.746 40.000 0.00 0.00 0.00 2.62
441 477 9.427079 GCAAGAGCCAGATCAAAATACGAAAGT 62.427 40.741 0.00 0.00 41.18 2.66
462 498 5.587033 GTACCTTTGTACGAAGAGGTTTG 57.413 43.478 22.34 8.38 42.30 2.93
463 499 4.411256 ACCTTTGTACGAAGAGGTTTGA 57.589 40.909 22.34 0.00 39.41 2.69
464 500 4.969484 ACCTTTGTACGAAGAGGTTTGAT 58.031 39.130 22.34 0.00 39.41 2.57
466 502 6.527423 ACCTTTGTACGAAGAGGTTTGATTA 58.473 36.000 22.34 0.00 39.41 1.75
467 503 6.426025 ACCTTTGTACGAAGAGGTTTGATTAC 59.574 38.462 22.34 0.00 39.41 1.89
468 504 6.649557 CCTTTGTACGAAGAGGTTTGATTACT 59.350 38.462 22.34 0.00 0.00 2.24
470 506 6.335471 TGTACGAAGAGGTTTGATTACTGA 57.665 37.500 0.00 0.00 0.00 3.41
471 507 6.931838 TGTACGAAGAGGTTTGATTACTGAT 58.068 36.000 0.00 0.00 0.00 2.90
472 508 8.058667 TGTACGAAGAGGTTTGATTACTGATA 57.941 34.615 0.00 0.00 0.00 2.15
476 512 9.449719 ACGAAGAGGTTTGATTACTGATAAAAT 57.550 29.630 0.00 0.00 0.00 1.82
481 517 9.994432 GAGGTTTGATTACTGATAAAATGAGTG 57.006 33.333 0.00 0.00 0.00 3.51
482 518 8.960591 AGGTTTGATTACTGATAAAATGAGTGG 58.039 33.333 0.00 0.00 0.00 4.00
483 519 8.956426 GGTTTGATTACTGATAAAATGAGTGGA 58.044 33.333 0.00 0.00 0.00 4.02
486 522 9.958180 TTGATTACTGATAAAATGAGTGGAAGA 57.042 29.630 0.00 0.00 0.00 2.87
489 525 6.059787 ACTGATAAAATGAGTGGAAGAGCT 57.940 37.500 0.00 0.00 0.00 4.09
490 526 5.879223 ACTGATAAAATGAGTGGAAGAGCTG 59.121 40.000 0.00 0.00 0.00 4.24
491 527 4.637534 TGATAAAATGAGTGGAAGAGCTGC 59.362 41.667 0.00 0.00 0.00 5.25
493 529 2.399916 AATGAGTGGAAGAGCTGCTC 57.600 50.000 21.72 21.72 0.00 4.26
494 530 0.175302 ATGAGTGGAAGAGCTGCTCG 59.825 55.000 22.77 0.00 35.36 5.03
495 531 1.153667 GAGTGGAAGAGCTGCTCGG 60.154 63.158 22.77 0.00 35.36 4.63
496 532 1.882989 GAGTGGAAGAGCTGCTCGGT 61.883 60.000 22.77 15.40 35.36 4.69
497 533 1.446966 GTGGAAGAGCTGCTCGGTC 60.447 63.158 22.77 21.84 40.43 4.79
498 534 1.908299 TGGAAGAGCTGCTCGGTCA 60.908 57.895 26.69 20.87 42.56 4.02
500 536 0.320771 GGAAGAGCTGCTCGGTCAAA 60.321 55.000 26.69 0.00 42.56 2.69
501 537 1.074752 GAAGAGCTGCTCGGTCAAAG 58.925 55.000 22.77 0.00 42.56 2.77
503 539 0.037790 AGAGCTGCTCGGTCAAAGAC 60.038 55.000 22.77 0.00 42.56 3.01
505 541 0.322975 AGCTGCTCGGTCAAAGACAT 59.677 50.000 0.00 0.00 33.68 3.06
506 542 1.160137 GCTGCTCGGTCAAAGACATT 58.840 50.000 0.00 0.00 33.68 2.71
507 543 1.129437 GCTGCTCGGTCAAAGACATTC 59.871 52.381 0.00 0.00 33.68 2.67
508 544 2.693069 CTGCTCGGTCAAAGACATTCT 58.307 47.619 0.00 0.00 33.68 2.40
509 545 2.670414 CTGCTCGGTCAAAGACATTCTC 59.330 50.000 0.00 0.00 33.68 2.87
510 546 2.300152 TGCTCGGTCAAAGACATTCTCT 59.700 45.455 0.00 0.00 33.68 3.10
511 547 2.926838 GCTCGGTCAAAGACATTCTCTC 59.073 50.000 0.00 0.00 33.68 3.20
512 548 3.615110 GCTCGGTCAAAGACATTCTCTCA 60.615 47.826 0.00 0.00 33.68 3.27
513 549 4.560128 CTCGGTCAAAGACATTCTCTCAA 58.440 43.478 0.00 0.00 33.68 3.02
514 550 4.560128 TCGGTCAAAGACATTCTCTCAAG 58.440 43.478 0.00 0.00 33.68 3.02
515 551 4.039245 TCGGTCAAAGACATTCTCTCAAGT 59.961 41.667 0.00 0.00 33.68 3.16
516 552 5.243060 TCGGTCAAAGACATTCTCTCAAGTA 59.757 40.000 0.00 0.00 33.68 2.24
520 556 6.425114 GTCAAAGACATTCTCTCAAGTAGCAA 59.575 38.462 0.00 0.00 32.09 3.91
521 557 6.992123 TCAAAGACATTCTCTCAAGTAGCAAA 59.008 34.615 0.00 0.00 0.00 3.68
522 558 7.172190 TCAAAGACATTCTCTCAAGTAGCAAAG 59.828 37.037 0.00 0.00 0.00 2.77
523 559 5.486526 AGACATTCTCTCAAGTAGCAAAGG 58.513 41.667 0.00 0.00 0.00 3.11
525 561 3.769739 TTCTCTCAAGTAGCAAAGGCA 57.230 42.857 0.00 0.00 44.61 4.75
526 562 3.988976 TCTCTCAAGTAGCAAAGGCAT 57.011 42.857 0.00 0.00 44.61 4.40
527 563 3.603532 TCTCTCAAGTAGCAAAGGCATG 58.396 45.455 0.00 0.00 44.61 4.06
528 564 3.008375 TCTCTCAAGTAGCAAAGGCATGT 59.992 43.478 0.00 0.00 44.61 3.21
529 565 3.076621 TCTCAAGTAGCAAAGGCATGTG 58.923 45.455 0.00 0.00 44.61 3.21
530 566 1.541147 TCAAGTAGCAAAGGCATGTGC 59.459 47.619 5.09 5.09 44.61 4.57
534 570 3.690745 GCAAAGGCATGTGCTCCT 58.309 55.556 6.20 0.00 41.70 3.69
535 571 1.214589 GCAAAGGCATGTGCTCCTG 59.785 57.895 6.20 1.42 41.70 3.86
536 572 1.888018 CAAAGGCATGTGCTCCTGG 59.112 57.895 4.84 0.00 41.70 4.45
537 573 0.896940 CAAAGGCATGTGCTCCTGGT 60.897 55.000 4.84 0.00 41.70 4.00
539 575 2.034687 GGCATGTGCTCCTGGTGT 59.965 61.111 4.84 0.00 41.70 4.16
540 576 2.338015 GGCATGTGCTCCTGGTGTG 61.338 63.158 4.84 0.00 41.70 3.82
542 578 0.890542 GCATGTGCTCCTGGTGTGAA 60.891 55.000 0.00 0.00 38.21 3.18
544 580 1.538512 CATGTGCTCCTGGTGTGAAAG 59.461 52.381 0.00 0.00 0.00 2.62
545 581 0.546122 TGTGCTCCTGGTGTGAAAGT 59.454 50.000 0.00 0.00 0.00 2.66
546 582 1.765904 TGTGCTCCTGGTGTGAAAGTA 59.234 47.619 0.00 0.00 0.00 2.24
547 583 2.171659 TGTGCTCCTGGTGTGAAAGTAA 59.828 45.455 0.00 0.00 0.00 2.24
548 584 3.211045 GTGCTCCTGGTGTGAAAGTAAA 58.789 45.455 0.00 0.00 0.00 2.01
549 585 3.630312 GTGCTCCTGGTGTGAAAGTAAAA 59.370 43.478 0.00 0.00 0.00 1.52
553 589 6.547880 TGCTCCTGGTGTGAAAGTAAAATAAA 59.452 34.615 0.00 0.00 0.00 1.40
554 590 7.068839 TGCTCCTGGTGTGAAAGTAAAATAAAA 59.931 33.333 0.00 0.00 0.00 1.52
596 632 1.610363 TTTTGTGGCATACTTCCGCA 58.390 45.000 0.00 0.00 41.85 5.69
598 634 3.331002 TGTGGCATACTTCCGCAAA 57.669 47.368 0.00 0.00 40.75 3.68
599 635 1.832883 TGTGGCATACTTCCGCAAAT 58.167 45.000 0.00 0.00 40.75 2.32
600 636 1.472082 TGTGGCATACTTCCGCAAATG 59.528 47.619 0.00 0.00 40.75 2.32
601 637 1.472480 GTGGCATACTTCCGCAAATGT 59.528 47.619 0.00 0.00 34.38 2.71
602 638 2.094752 GTGGCATACTTCCGCAAATGTT 60.095 45.455 0.00 0.00 34.38 2.71
603 639 2.560542 TGGCATACTTCCGCAAATGTTT 59.439 40.909 0.00 0.00 0.00 2.83
604 640 2.923020 GGCATACTTCCGCAAATGTTTG 59.077 45.455 1.19 1.19 41.03 2.93
605 641 3.574614 GCATACTTCCGCAAATGTTTGT 58.425 40.909 7.26 0.00 40.24 2.83
606 642 3.987220 GCATACTTCCGCAAATGTTTGTT 59.013 39.130 7.26 0.00 40.24 2.83
607 643 4.143347 GCATACTTCCGCAAATGTTTGTTG 60.143 41.667 7.26 1.28 40.24 3.33
608 644 3.518634 ACTTCCGCAAATGTTTGTTGT 57.481 38.095 7.26 0.00 40.24 3.32
609 645 3.186119 ACTTCCGCAAATGTTTGTTGTG 58.814 40.909 7.26 0.00 40.24 3.33
610 646 1.565305 TCCGCAAATGTTTGTTGTGC 58.435 45.000 7.26 0.00 40.24 4.57
611 647 1.134995 TCCGCAAATGTTTGTTGTGCA 60.135 42.857 7.26 0.00 40.24 4.57
612 648 1.865970 CCGCAAATGTTTGTTGTGCAT 59.134 42.857 7.26 0.00 40.24 3.96
613 649 2.348685 CCGCAAATGTTTGTTGTGCATG 60.349 45.455 7.26 0.00 40.24 4.06
615 651 2.031807 GCAAATGTTTGTTGTGCATGCA 59.968 40.909 18.46 18.46 40.24 3.96
617 653 4.659088 CAAATGTTTGTTGTGCATGCAAA 58.341 34.783 24.58 15.92 33.59 3.68
618 654 4.959596 AATGTTTGTTGTGCATGCAAAA 57.040 31.818 24.58 21.90 34.47 2.44
619 655 5.502153 AATGTTTGTTGTGCATGCAAAAT 57.498 30.435 25.58 6.44 34.47 1.82
620 656 4.959596 TGTTTGTTGTGCATGCAAAATT 57.040 31.818 25.58 0.00 34.47 1.82
621 657 5.306532 TGTTTGTTGTGCATGCAAAATTT 57.693 30.435 25.58 0.00 34.47 1.82
622 658 5.706916 TGTTTGTTGTGCATGCAAAATTTT 58.293 29.167 25.58 0.00 34.47 1.82
623 659 6.845302 TGTTTGTTGTGCATGCAAAATTTTA 58.155 28.000 25.58 10.50 34.47 1.52
624 660 7.478322 TGTTTGTTGTGCATGCAAAATTTTAT 58.522 26.923 25.58 0.00 34.47 1.40
626 662 6.856135 TGTTGTGCATGCAAAATTTTATCA 57.144 29.167 25.58 14.81 0.00 2.15
627 663 7.436430 TGTTGTGCATGCAAAATTTTATCAT 57.564 28.000 25.58 7.45 0.00 2.45
628 664 7.298854 TGTTGTGCATGCAAAATTTTATCATG 58.701 30.769 25.58 25.63 35.37 3.07
629 665 7.172703 TGTTGTGCATGCAAAATTTTATCATGA 59.827 29.630 29.94 19.78 34.78 3.07
630 666 7.668525 TGTGCATGCAAAATTTTATCATGAA 57.331 28.000 29.94 23.63 34.78 2.57
631 667 8.095937 TGTGCATGCAAAATTTTATCATGAAA 57.904 26.923 29.94 20.98 34.78 2.69
632 668 8.731605 TGTGCATGCAAAATTTTATCATGAAAT 58.268 25.926 29.94 8.56 34.78 2.17
634 670 8.947115 TGCATGCAAAATTTTATCATGAAATCA 58.053 25.926 29.94 21.39 34.78 2.57
647 683 9.844790 TTATCATGAAATCACATTGTGAAAGTC 57.155 29.630 22.44 18.29 45.96 3.01
648 684 7.274603 TCATGAAATCACATTGTGAAAGTCA 57.725 32.000 22.44 22.32 45.96 3.41
649 685 7.888424 TCATGAAATCACATTGTGAAAGTCAT 58.112 30.769 22.44 23.27 45.96 3.06
650 686 7.810759 TCATGAAATCACATTGTGAAAGTCATG 59.189 33.333 33.55 33.55 45.96 3.07
651 687 5.921976 TGAAATCACATTGTGAAAGTCATGC 59.078 36.000 22.44 7.83 45.96 4.06
652 688 5.456548 AATCACATTGTGAAAGTCATGCA 57.543 34.783 22.44 0.00 45.96 3.96
653 689 4.915158 TCACATTGTGAAAGTCATGCAA 57.085 36.364 16.95 0.00 39.78 4.08
654 690 5.259832 TCACATTGTGAAAGTCATGCAAA 57.740 34.783 16.95 0.00 39.78 3.68
655 691 5.658468 TCACATTGTGAAAGTCATGCAAAA 58.342 33.333 16.95 0.00 39.78 2.44
656 692 6.104665 TCACATTGTGAAAGTCATGCAAAAA 58.895 32.000 16.95 0.00 39.78 1.94
685 721 7.797038 AAAAATCAGAGCTTCAAAATGCTTT 57.203 28.000 0.00 0.00 39.91 3.51
686 722 7.797038 AAAATCAGAGCTTCAAAATGCTTTT 57.203 28.000 0.00 0.00 39.91 2.27
1019 1058 3.499050 GCACCAGCAGCAGATGAG 58.501 61.111 0.00 0.00 41.58 2.90
1098 1137 2.125147 CCCTTCCTCGCGATGCAA 60.125 61.111 10.36 1.43 0.00 4.08
1194 1233 2.904866 CACCACCACCACCAACCG 60.905 66.667 0.00 0.00 0.00 4.44
1261 1300 0.035056 CAATCAGTTCGGGGCCTTCT 60.035 55.000 0.84 0.00 0.00 2.85
1449 1497 3.170717 TGGGAAAGATCGGAACAGTAGT 58.829 45.455 0.00 0.00 0.00 2.73
1467 1515 2.606826 GGAGGGGTCGGTCAGGTT 60.607 66.667 0.00 0.00 0.00 3.50
1546 1594 4.616181 GCACTGTAGCGGTTATTGAATT 57.384 40.909 0.00 0.00 0.00 2.17
1547 1595 4.981794 GCACTGTAGCGGTTATTGAATTT 58.018 39.130 0.00 0.00 0.00 1.82
1548 1596 5.399013 GCACTGTAGCGGTTATTGAATTTT 58.601 37.500 0.00 0.00 0.00 1.82
1549 1597 5.861787 GCACTGTAGCGGTTATTGAATTTTT 59.138 36.000 0.00 0.00 0.00 1.94
1600 1649 7.491372 TCGATCAGTAAATAGTTGTGATTGTCC 59.509 37.037 13.08 0.22 32.79 4.02
1638 1688 1.873591 CCCACTAGCGGCATATTTCAC 59.126 52.381 1.45 0.00 0.00 3.18
1652 1702 5.353678 GCATATTTCACTGGGATAGCTGATC 59.646 44.000 0.00 0.00 0.00 2.92
1892 1944 8.251026 TGGTATCTCTTGTTTACAGTATCTGTG 58.749 37.037 11.92 0.00 45.01 3.66
1914 1966 2.565841 CTATGGGCACAACTAAGCTCC 58.434 52.381 0.00 0.00 0.00 4.70
2026 2078 7.079182 TGTGATTGTTTTGGAACGTATATCC 57.921 36.000 0.00 0.00 38.65 2.59
2039 2091 4.978186 ACGTATATCCGTGAACATATCGG 58.022 43.478 0.00 0.00 44.76 4.18
2092 2144 8.912988 TGGTAATATGATCGCTATATCATCACA 58.087 33.333 8.73 0.00 43.81 3.58
2093 2145 9.920133 GGTAATATGATCGCTATATCATCACAT 57.080 33.333 8.73 0.00 43.81 3.21
2244 2296 8.199449 CCAAACTAATAACAAATCAGATGGCAT 58.801 33.333 0.00 0.00 0.00 4.40
2285 2337 5.587388 AAATGGTGTGAGGAATAATGCAG 57.413 39.130 0.00 0.00 0.00 4.41
2554 2606 1.969862 CCGTGGAAGAGGTACCGTT 59.030 57.895 6.18 4.07 0.00 4.44
2585 2637 5.897377 ATGGCATACAAACAGAACTTACC 57.103 39.130 0.00 0.00 0.00 2.85
2586 2638 4.076394 TGGCATACAAACAGAACTTACCC 58.924 43.478 0.00 0.00 0.00 3.69
2605 2657 1.538512 CCTGTGTCACCTCATGCTTTG 59.461 52.381 0.00 0.00 0.00 2.77
2623 2675 1.531602 GGAACATGCATAGGGGGCC 60.532 63.158 0.00 0.00 0.00 5.80
2629 2681 1.349542 ATGCATAGGGGGCCGTGTTA 61.350 55.000 0.00 0.00 0.00 2.41
2644 2696 5.266242 GCCGTGTTAATCAGAATTAAGCAG 58.734 41.667 0.00 0.00 37.87 4.24
2862 2914 5.535783 TGAAATCTTTGAACAGAAGGCATGA 59.464 36.000 0.00 0.00 0.00 3.07
2975 3027 2.820197 CTGTGTAGTCTAGTCCACTGCA 59.180 50.000 0.00 0.00 34.50 4.41
2990 3042 5.237344 GTCCACTGCATTCCTTGTACATATC 59.763 44.000 0.00 0.00 0.00 1.63
2999 3051 7.201574 GCATTCCTTGTACATATCGTGTGTAAA 60.202 37.037 0.00 0.00 42.24 2.01
3105 3159 3.012518 ACATCTTATCTGCCACAGTTGC 58.987 45.455 0.00 0.00 32.61 4.17
3158 3212 2.993220 CGAGTCACGAATTTGATCACCA 59.007 45.455 0.00 0.00 45.77 4.17
3264 3318 6.658391 AGAAATGACTGGAGAGAAGGAAAATG 59.342 38.462 0.00 0.00 0.00 2.32
3362 3416 5.861727 AGTATGTCATGCTGAATGCTGATA 58.138 37.500 2.23 0.00 43.37 2.15
3423 3477 7.692908 AAACGAGTTTCATTACATGTTTTGG 57.307 32.000 2.30 0.00 29.22 3.28
3448 3502 0.461693 GCATCTCTCCTGGTCTGTGC 60.462 60.000 0.00 0.00 0.00 4.57
3535 3589 2.168521 TGTTACTCAGCTAGATGCCCAC 59.831 50.000 2.24 0.00 44.23 4.61
3600 3654 9.562583 TCTAAATTATTAAAACATGTTCGTGGC 57.437 29.630 12.39 0.00 0.00 5.01
3981 4035 2.775890 CATTGACTGACTGCTGACCTT 58.224 47.619 0.00 0.00 0.00 3.50
4211 4265 5.760253 CGCTGTTCCAATATTTCCATCTACT 59.240 40.000 0.00 0.00 0.00 2.57
4234 4288 5.697848 ACACGCGTTAATCTTGAATACTC 57.302 39.130 10.22 0.00 0.00 2.59
4547 4601 0.540923 TCATGATGGTGGTGCGATGA 59.459 50.000 0.00 0.00 0.00 2.92
4719 4773 1.139853 GGTGGACCAGATAGAGCTTGG 59.860 57.143 0.00 0.00 35.64 3.61
4857 4911 1.134670 GGAGGATGAAAGTGAGGACGG 60.135 57.143 0.00 0.00 0.00 4.79
4978 5041 4.152647 TCTCAGCCTGAGTTTCTTGACTA 58.847 43.478 20.67 0.00 44.58 2.59
4979 5042 4.219507 TCTCAGCCTGAGTTTCTTGACTAG 59.780 45.833 20.67 0.00 44.58 2.57
4982 5045 4.688413 CAGCCTGAGTTTCTTGACTAGAAC 59.312 45.833 0.00 0.00 42.50 3.01
4992 5055 6.681729 TTCTTGACTAGAACCCAAGTATGT 57.318 37.500 0.00 0.00 37.96 2.29
5006 5069 2.566913 AGTATGTGACCGTGTTTTGCA 58.433 42.857 0.00 0.00 0.00 4.08
5015 5078 4.757657 TGACCGTGTTTTGCATGTATAGTT 59.242 37.500 0.00 0.00 32.30 2.24
5085 5148 6.719365 AGCTATGATTTCGTTGTAATGCTTC 58.281 36.000 0.00 0.00 0.00 3.86
5207 5277 4.396166 CGATGCCCTAATGTTGTTTTCTCT 59.604 41.667 0.00 0.00 0.00 3.10
5295 5375 7.950512 TCTGAAAAAGATGCCATACAGAAAAA 58.049 30.769 0.00 0.00 31.69 1.94
5388 5468 7.189087 TGTCATGCTATATAATACTCCCTCCA 58.811 38.462 0.00 0.00 0.00 3.86
5407 5487 6.149474 CCCTCCATCAAGTTAGTACAAAGTTG 59.851 42.308 0.00 0.00 39.91 3.16
5427 5507 5.177696 AGTTGAGACACTTATTTTGAGACGC 59.822 40.000 0.00 0.00 0.00 5.19
5431 5511 3.074412 ACACTTATTTTGAGACGCAGGG 58.926 45.455 0.00 0.00 0.00 4.45
5435 5515 2.568623 ATTTTGAGACGCAGGGAGTT 57.431 45.000 0.00 0.00 0.00 3.01
5634 5714 5.130145 AGGATTGGAAGACATCTAGACTTGG 59.870 44.000 0.00 0.00 32.40 3.61
5784 5888 7.819900 TGGTTGTAATAAAATTGCCATGGTAAC 59.180 33.333 18.22 3.75 0.00 2.50
5923 6030 5.048083 TGCTCTAACCCTGCTTATTTTGTTG 60.048 40.000 0.00 0.00 0.00 3.33
5929 6036 4.161377 ACCCTGCTTATTTTGTTGTGTTGT 59.839 37.500 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.158561 GATGTTGCAACCCCTGTGCC 62.159 60.000 26.14 0.00 0.00 5.01
1 2 1.290009 GATGTTGCAACCCCTGTGC 59.710 57.895 26.14 0.00 0.00 4.57
2 3 0.540365 AGGATGTTGCAACCCCTGTG 60.540 55.000 28.96 0.00 32.19 3.66
3 4 0.251341 GAGGATGTTGCAACCCCTGT 60.251 55.000 32.44 17.88 33.13 4.00
4 5 0.967380 GGAGGATGTTGCAACCCCTG 60.967 60.000 32.44 0.00 33.13 4.45
5 6 1.142688 AGGAGGATGTTGCAACCCCT 61.143 55.000 29.56 29.56 34.86 4.79
6 7 0.681243 GAGGAGGATGTTGCAACCCC 60.681 60.000 26.14 24.41 0.00 4.95
7 8 0.329596 AGAGGAGGATGTTGCAACCC 59.670 55.000 26.14 20.15 0.00 4.11
8 9 2.087646 GAAGAGGAGGATGTTGCAACC 58.912 52.381 26.14 11.75 0.00 3.77
9 10 2.087646 GGAAGAGGAGGATGTTGCAAC 58.912 52.381 22.83 22.83 0.00 4.17
10 11 1.704628 TGGAAGAGGAGGATGTTGCAA 59.295 47.619 0.00 0.00 0.00 4.08
11 12 1.003580 GTGGAAGAGGAGGATGTTGCA 59.996 52.381 0.00 0.00 0.00 4.08
12 13 1.003580 TGTGGAAGAGGAGGATGTTGC 59.996 52.381 0.00 0.00 0.00 4.17
13 14 2.938756 GCTGTGGAAGAGGAGGATGTTG 60.939 54.545 0.00 0.00 0.00 3.33
14 15 1.280421 GCTGTGGAAGAGGAGGATGTT 59.720 52.381 0.00 0.00 0.00 2.71
15 16 0.908198 GCTGTGGAAGAGGAGGATGT 59.092 55.000 0.00 0.00 0.00 3.06
16 17 0.179936 GGCTGTGGAAGAGGAGGATG 59.820 60.000 0.00 0.00 0.00 3.51
17 18 1.333636 CGGCTGTGGAAGAGGAGGAT 61.334 60.000 0.00 0.00 0.00 3.24
18 19 1.984570 CGGCTGTGGAAGAGGAGGA 60.985 63.158 0.00 0.00 0.00 3.71
19 20 1.984570 TCGGCTGTGGAAGAGGAGG 60.985 63.158 0.00 0.00 0.00 4.30
20 21 1.216710 GTCGGCTGTGGAAGAGGAG 59.783 63.158 0.00 0.00 0.00 3.69
21 22 2.283529 GGTCGGCTGTGGAAGAGGA 61.284 63.158 0.00 0.00 0.00 3.71
22 23 2.266055 GGTCGGCTGTGGAAGAGG 59.734 66.667 0.00 0.00 0.00 3.69
23 24 1.079543 CTGGTCGGCTGTGGAAGAG 60.080 63.158 0.00 0.00 0.00 2.85
24 25 3.059982 CTGGTCGGCTGTGGAAGA 58.940 61.111 0.00 0.00 0.00 2.87
25 26 2.743928 GCTGGTCGGCTGTGGAAG 60.744 66.667 0.00 0.00 0.00 3.46
26 27 4.329545 GGCTGGTCGGCTGTGGAA 62.330 66.667 1.58 0.00 34.85 3.53
35 36 3.411517 AAGGATGGGGGCTGGTCG 61.412 66.667 0.00 0.00 0.00 4.79
36 37 2.276740 CAAGGATGGGGGCTGGTC 59.723 66.667 0.00 0.00 0.00 4.02
37 38 2.535317 ACAAGGATGGGGGCTGGT 60.535 61.111 0.00 0.00 0.00 4.00
38 39 2.276309 GAGACAAGGATGGGGGCTGG 62.276 65.000 0.00 0.00 0.00 4.85
39 40 1.225704 GAGACAAGGATGGGGGCTG 59.774 63.158 0.00 0.00 0.00 4.85
40 41 2.003548 GGAGACAAGGATGGGGGCT 61.004 63.158 0.00 0.00 0.00 5.19
41 42 2.597903 GGAGACAAGGATGGGGGC 59.402 66.667 0.00 0.00 0.00 5.80
42 43 2.911143 CGGAGACAAGGATGGGGG 59.089 66.667 0.00 0.00 0.00 5.40
43 44 2.190578 GCGGAGACAAGGATGGGG 59.809 66.667 0.00 0.00 0.00 4.96
44 45 2.190578 GGCGGAGACAAGGATGGG 59.809 66.667 0.00 0.00 31.66 4.00
45 46 1.048724 TAGGGCGGAGACAAGGATGG 61.049 60.000 0.00 0.00 37.00 3.51
46 47 0.390860 CTAGGGCGGAGACAAGGATG 59.609 60.000 0.00 0.00 37.00 3.51
47 48 1.403687 GCTAGGGCGGAGACAAGGAT 61.404 60.000 0.00 0.00 37.00 3.24
48 49 2.058595 GCTAGGGCGGAGACAAGGA 61.059 63.158 0.00 0.00 37.00 3.36
49 50 2.501610 GCTAGGGCGGAGACAAGG 59.498 66.667 0.00 0.00 37.00 3.61
50 51 2.501610 GGCTAGGGCGGAGACAAG 59.498 66.667 0.00 0.00 37.00 3.16
72 73 3.866582 GATGGTCGGGGCTGGGAG 61.867 72.222 0.00 0.00 0.00 4.30
73 74 4.731853 TGATGGTCGGGGCTGGGA 62.732 66.667 0.00 0.00 0.00 4.37
74 75 3.492353 ATGATGGTCGGGGCTGGG 61.492 66.667 0.00 0.00 0.00 4.45
75 76 2.203252 CATGATGGTCGGGGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
76 77 1.820906 CACATGATGGTCGGGGCTG 60.821 63.158 0.00 0.00 0.00 4.85
77 78 1.348008 ATCACATGATGGTCGGGGCT 61.348 55.000 0.00 0.00 32.68 5.19
78 79 0.886490 GATCACATGATGGTCGGGGC 60.886 60.000 0.00 0.00 34.37 5.80
79 80 0.761187 AGATCACATGATGGTCGGGG 59.239 55.000 0.00 0.00 43.96 5.73
80 81 1.875009 CAGATCACATGATGGTCGGG 58.125 55.000 0.00 0.00 43.96 5.14
81 82 1.224075 GCAGATCACATGATGGTCGG 58.776 55.000 0.00 2.12 43.96 4.79
82 83 0.857287 CGCAGATCACATGATGGTCG 59.143 55.000 0.00 0.00 43.96 4.79
83 84 0.585357 GCGCAGATCACATGATGGTC 59.415 55.000 0.30 0.00 38.93 4.02
84 85 0.816825 GGCGCAGATCACATGATGGT 60.817 55.000 10.83 0.00 34.37 3.55
85 86 1.838568 CGGCGCAGATCACATGATGG 61.839 60.000 10.83 0.00 34.37 3.51
86 87 1.568025 CGGCGCAGATCACATGATG 59.432 57.895 10.83 0.00 34.37 3.07
87 88 1.596203 CCGGCGCAGATCACATGAT 60.596 57.895 10.83 0.00 37.51 2.45
88 89 2.202919 CCGGCGCAGATCACATGA 60.203 61.111 10.83 0.00 0.00 3.07
89 90 3.945434 GCCGGCGCAGATCACATG 61.945 66.667 12.58 0.00 34.03 3.21
103 104 2.817423 GATCAGCTTGCTTCGGCCG 61.817 63.158 22.12 22.12 40.91 6.13
104 105 2.817423 CGATCAGCTTGCTTCGGCC 61.817 63.158 8.36 0.00 40.91 6.13
105 106 1.811266 TCGATCAGCTTGCTTCGGC 60.811 57.895 14.19 0.00 42.19 5.54
106 107 0.737367 TGTCGATCAGCTTGCTTCGG 60.737 55.000 14.19 0.00 32.67 4.30
107 108 0.644331 CTGTCGATCAGCTTGCTTCG 59.356 55.000 9.60 9.60 37.36 3.79
120 121 2.962569 CCTTGAGGTCGCTGTCGA 59.037 61.111 0.00 0.00 43.28 4.20
130 131 5.928264 CCAAAGAAGCAATTTTACCTTGAGG 59.072 40.000 0.00 0.00 42.17 3.86
131 132 6.515832 ACCAAAGAAGCAATTTTACCTTGAG 58.484 36.000 0.00 0.00 0.00 3.02
132 133 6.097554 TGACCAAAGAAGCAATTTTACCTTGA 59.902 34.615 0.00 0.00 0.00 3.02
133 134 6.279882 TGACCAAAGAAGCAATTTTACCTTG 58.720 36.000 0.00 0.00 0.00 3.61
134 135 6.478512 TGACCAAAGAAGCAATTTTACCTT 57.521 33.333 0.00 0.00 0.00 3.50
135 136 6.098266 ACTTGACCAAAGAAGCAATTTTACCT 59.902 34.615 0.00 0.00 39.38 3.08
136 137 6.200854 CACTTGACCAAAGAAGCAATTTTACC 59.799 38.462 0.00 0.00 39.38 2.85
137 138 6.978080 TCACTTGACCAAAGAAGCAATTTTAC 59.022 34.615 0.00 0.00 39.38 2.01
138 139 7.106439 TCACTTGACCAAAGAAGCAATTTTA 57.894 32.000 0.00 0.00 39.38 1.52
139 140 5.976458 TCACTTGACCAAAGAAGCAATTTT 58.024 33.333 0.00 0.00 39.38 1.82
140 141 5.596836 TCACTTGACCAAAGAAGCAATTT 57.403 34.783 0.00 0.00 39.38 1.82
141 142 5.596836 TTCACTTGACCAAAGAAGCAATT 57.403 34.783 0.00 0.00 39.38 2.32
142 143 5.596836 TTTCACTTGACCAAAGAAGCAAT 57.403 34.783 0.00 0.00 39.38 3.56
143 144 5.398603 TTTTCACTTGACCAAAGAAGCAA 57.601 34.783 0.00 0.00 39.38 3.91
170 171 4.370364 TTCACTTGACCAAAGAAGCAAC 57.630 40.909 0.00 0.00 39.38 4.17
192 193 4.343526 TGGTGCAACTTGTGTCCAATATTT 59.656 37.500 2.04 0.00 36.74 1.40
196 197 1.682854 CTGGTGCAACTTGTGTCCAAT 59.317 47.619 2.04 0.00 36.74 3.16
201 202 1.455587 CCCCTGGTGCAACTTGTGT 60.456 57.895 2.04 0.00 36.74 3.72
214 215 4.220602 CCTGGAAAGACATTTTTACCCCTG 59.779 45.833 0.00 0.00 0.00 4.45
215 216 4.140782 ACCTGGAAAGACATTTTTACCCCT 60.141 41.667 0.00 0.00 0.00 4.79
219 220 5.008316 ACGACACCTGGAAAGACATTTTTAC 59.992 40.000 0.00 0.00 0.00 2.01
225 226 2.930826 AACGACACCTGGAAAGACAT 57.069 45.000 0.00 0.00 0.00 3.06
242 243 6.638096 TTTTGCCTACTAAGGGTGTTAAAC 57.362 37.500 0.00 0.00 43.87 2.01
250 251 3.891366 CCATCCATTTTGCCTACTAAGGG 59.109 47.826 0.00 0.00 43.87 3.95
252 253 5.221126 GCTTCCATCCATTTTGCCTACTAAG 60.221 44.000 0.00 0.00 0.00 2.18
270 272 0.250295 CTCCCTTTGTGACGCTTCCA 60.250 55.000 0.00 0.00 0.00 3.53
276 278 1.238439 AATGTGCTCCCTTTGTGACG 58.762 50.000 0.00 0.00 0.00 4.35
316 318 5.369833 TGACACCGGAAAACTATTTCTTCA 58.630 37.500 9.46 0.00 43.65 3.02
324 326 3.449737 CCCTATCTGACACCGGAAAACTA 59.550 47.826 9.46 0.00 0.00 2.24
397 403 6.089551 GCTCTTGCGTATGTAACTATGTATGG 59.910 42.308 0.00 0.00 0.00 2.74
398 404 6.089551 GGCTCTTGCGTATGTAACTATGTATG 59.910 42.308 0.00 0.00 40.82 2.39
439 475 5.069516 TCAAACCTCTTCGTACAAAGGTACT 59.930 40.000 6.05 0.00 46.20 2.73
440 476 5.291971 TCAAACCTCTTCGTACAAAGGTAC 58.708 41.667 6.05 0.00 41.25 3.34
441 477 5.534207 TCAAACCTCTTCGTACAAAGGTA 57.466 39.130 6.05 0.00 41.25 3.08
442 478 4.411256 TCAAACCTCTTCGTACAAAGGT 57.589 40.909 0.00 0.00 43.96 3.50
443 479 5.941948 AATCAAACCTCTTCGTACAAAGG 57.058 39.130 0.00 0.00 34.94 3.11
444 480 7.384115 TCAGTAATCAAACCTCTTCGTACAAAG 59.616 37.037 0.00 0.00 0.00 2.77
445 481 7.211573 TCAGTAATCAAACCTCTTCGTACAAA 58.788 34.615 0.00 0.00 0.00 2.83
446 482 6.751157 TCAGTAATCAAACCTCTTCGTACAA 58.249 36.000 0.00 0.00 0.00 2.41
447 483 6.335471 TCAGTAATCAAACCTCTTCGTACA 57.665 37.500 0.00 0.00 0.00 2.90
448 484 8.922058 TTATCAGTAATCAAACCTCTTCGTAC 57.078 34.615 0.00 0.00 0.00 3.67
455 491 9.994432 CACTCATTTTATCAGTAATCAAACCTC 57.006 33.333 0.00 0.00 0.00 3.85
456 492 8.960591 CCACTCATTTTATCAGTAATCAAACCT 58.039 33.333 0.00 0.00 0.00 3.50
460 496 9.958180 TCTTCCACTCATTTTATCAGTAATCAA 57.042 29.630 0.00 0.00 0.00 2.57
462 498 8.555361 GCTCTTCCACTCATTTTATCAGTAATC 58.445 37.037 0.00 0.00 0.00 1.75
463 499 8.270744 AGCTCTTCCACTCATTTTATCAGTAAT 58.729 33.333 0.00 0.00 0.00 1.89
464 500 7.550551 CAGCTCTTCCACTCATTTTATCAGTAA 59.449 37.037 0.00 0.00 0.00 2.24
466 502 5.879223 CAGCTCTTCCACTCATTTTATCAGT 59.121 40.000 0.00 0.00 0.00 3.41
467 503 5.220815 GCAGCTCTTCCACTCATTTTATCAG 60.221 44.000 0.00 0.00 0.00 2.90
468 504 4.637534 GCAGCTCTTCCACTCATTTTATCA 59.362 41.667 0.00 0.00 0.00 2.15
470 506 4.853007 AGCAGCTCTTCCACTCATTTTAT 58.147 39.130 0.00 0.00 0.00 1.40
471 507 4.256920 GAGCAGCTCTTCCACTCATTTTA 58.743 43.478 15.78 0.00 0.00 1.52
472 508 3.080319 GAGCAGCTCTTCCACTCATTTT 58.920 45.455 15.78 0.00 0.00 1.82
476 512 1.588597 CGAGCAGCTCTTCCACTCA 59.411 57.895 20.39 0.00 0.00 3.41
478 514 1.882989 GACCGAGCAGCTCTTCCACT 61.883 60.000 20.39 0.00 0.00 4.00
479 515 1.446966 GACCGAGCAGCTCTTCCAC 60.447 63.158 20.39 3.89 0.00 4.02
481 517 0.320771 TTTGACCGAGCAGCTCTTCC 60.321 55.000 20.39 9.00 0.00 3.46
482 518 1.074752 CTTTGACCGAGCAGCTCTTC 58.925 55.000 20.39 15.77 0.00 2.87
483 519 0.681733 TCTTTGACCGAGCAGCTCTT 59.318 50.000 20.39 6.98 0.00 2.85
485 521 0.319900 TGTCTTTGACCGAGCAGCTC 60.320 55.000 12.94 12.94 0.00 4.09
486 522 0.322975 ATGTCTTTGACCGAGCAGCT 59.677 50.000 0.00 0.00 0.00 4.24
489 525 2.300152 AGAGAATGTCTTTGACCGAGCA 59.700 45.455 0.00 0.00 27.07 4.26
490 526 2.926838 GAGAGAATGTCTTTGACCGAGC 59.073 50.000 0.00 0.00 34.71 5.03
491 527 4.179926 TGAGAGAATGTCTTTGACCGAG 57.820 45.455 0.00 0.00 34.71 4.63
493 529 4.310769 ACTTGAGAGAATGTCTTTGACCG 58.689 43.478 0.00 0.00 34.71 4.79
494 530 5.350091 GCTACTTGAGAGAATGTCTTTGACC 59.650 44.000 0.00 0.00 34.71 4.02
495 531 5.928839 TGCTACTTGAGAGAATGTCTTTGAC 59.071 40.000 0.00 0.00 34.71 3.18
496 532 6.101650 TGCTACTTGAGAGAATGTCTTTGA 57.898 37.500 0.00 0.00 34.71 2.69
497 533 6.791887 TTGCTACTTGAGAGAATGTCTTTG 57.208 37.500 0.00 0.00 34.71 2.77
498 534 6.429385 CCTTTGCTACTTGAGAGAATGTCTTT 59.571 38.462 0.00 0.00 34.71 2.52
500 536 5.486526 CCTTTGCTACTTGAGAGAATGTCT 58.513 41.667 0.00 0.00 38.71 3.41
501 537 4.094146 GCCTTTGCTACTTGAGAGAATGTC 59.906 45.833 0.00 0.00 33.53 3.06
503 539 4.005650 TGCCTTTGCTACTTGAGAGAATG 58.994 43.478 0.00 0.00 38.71 2.67
505 541 3.769739 TGCCTTTGCTACTTGAGAGAA 57.230 42.857 0.00 0.00 38.71 2.87
506 542 3.008375 ACATGCCTTTGCTACTTGAGAGA 59.992 43.478 0.00 0.00 38.71 3.10
507 543 3.126514 CACATGCCTTTGCTACTTGAGAG 59.873 47.826 0.00 0.00 38.71 3.20
508 544 3.076621 CACATGCCTTTGCTACTTGAGA 58.923 45.455 0.00 0.00 38.71 3.27
509 545 2.415090 GCACATGCCTTTGCTACTTGAG 60.415 50.000 0.00 0.00 38.71 3.02
510 546 1.541147 GCACATGCCTTTGCTACTTGA 59.459 47.619 0.00 0.00 38.71 3.02
511 547 1.986698 GCACATGCCTTTGCTACTTG 58.013 50.000 0.00 0.00 38.71 3.16
520 556 1.303888 CACCAGGAGCACATGCCTT 60.304 57.895 0.00 0.00 43.38 4.35
521 557 2.353958 CACCAGGAGCACATGCCT 59.646 61.111 0.00 0.00 43.38 4.75
522 558 2.034687 ACACCAGGAGCACATGCC 59.965 61.111 0.00 0.00 43.38 4.40
523 559 0.890542 TTCACACCAGGAGCACATGC 60.891 55.000 0.00 0.00 42.49 4.06
525 561 1.143684 ACTTTCACACCAGGAGCACAT 59.856 47.619 0.00 0.00 0.00 3.21
526 562 0.546122 ACTTTCACACCAGGAGCACA 59.454 50.000 0.00 0.00 0.00 4.57
527 563 2.543777 TACTTTCACACCAGGAGCAC 57.456 50.000 0.00 0.00 0.00 4.40
528 564 3.569194 TTTACTTTCACACCAGGAGCA 57.431 42.857 0.00 0.00 0.00 4.26
529 565 6.569179 TTATTTTACTTTCACACCAGGAGC 57.431 37.500 0.00 0.00 0.00 4.70
576 612 1.957177 TGCGGAAGTATGCCACAAAAA 59.043 42.857 0.00 0.00 25.52 1.94
577 613 1.610363 TGCGGAAGTATGCCACAAAA 58.390 45.000 0.00 0.00 25.52 2.44
579 615 1.610363 TTTGCGGAAGTATGCCACAA 58.390 45.000 0.00 0.00 25.52 3.33
580 616 1.472082 CATTTGCGGAAGTATGCCACA 59.528 47.619 0.00 0.00 25.52 4.17
581 617 1.472480 ACATTTGCGGAAGTATGCCAC 59.528 47.619 1.68 0.00 25.52 5.01
582 618 1.832883 ACATTTGCGGAAGTATGCCA 58.167 45.000 1.68 0.00 25.52 4.92
583 619 2.923020 CAAACATTTGCGGAAGTATGCC 59.077 45.455 1.68 0.00 0.00 4.40
584 620 3.574614 ACAAACATTTGCGGAAGTATGC 58.425 40.909 4.25 0.00 41.79 3.14
585 621 4.981674 ACAACAAACATTTGCGGAAGTATG 59.018 37.500 4.25 0.34 41.79 2.39
586 622 4.981674 CACAACAAACATTTGCGGAAGTAT 59.018 37.500 4.25 0.00 41.79 2.12
587 623 4.355437 CACAACAAACATTTGCGGAAGTA 58.645 39.130 4.25 0.00 41.79 2.24
588 624 3.186119 CACAACAAACATTTGCGGAAGT 58.814 40.909 4.25 0.00 41.79 3.01
591 627 1.134995 TGCACAACAAACATTTGCGGA 60.135 42.857 4.25 0.00 41.79 5.54
592 628 1.284657 TGCACAACAAACATTTGCGG 58.715 45.000 4.25 0.04 41.79 5.69
593 629 2.893837 CATGCACAACAAACATTTGCG 58.106 42.857 4.25 0.00 41.79 4.85
594 630 2.031807 TGCATGCACAACAAACATTTGC 59.968 40.909 18.46 0.00 41.79 3.68
596 632 4.959596 TTTGCATGCACAACAAACATTT 57.040 31.818 22.58 0.00 0.00 2.32
597 633 4.959596 TTTTGCATGCACAACAAACATT 57.040 31.818 22.58 0.00 33.29 2.71
598 634 5.502153 AATTTTGCATGCACAACAAACAT 57.498 30.435 22.58 8.21 33.29 2.71
599 635 4.959596 AATTTTGCATGCACAACAAACA 57.040 31.818 22.58 0.00 33.29 2.83
600 636 7.642978 TGATAAAATTTTGCATGCACAACAAAC 59.357 29.630 22.58 10.80 33.29 2.93
601 637 7.700505 TGATAAAATTTTGCATGCACAACAAA 58.299 26.923 22.58 18.36 0.00 2.83
602 638 7.255491 TGATAAAATTTTGCATGCACAACAA 57.745 28.000 22.58 9.42 0.00 2.83
603 639 6.856135 TGATAAAATTTTGCATGCACAACA 57.144 29.167 22.58 10.39 0.00 3.33
604 640 7.519843 TCATGATAAAATTTTGCATGCACAAC 58.480 30.769 26.99 7.74 35.80 3.32
605 641 7.668525 TCATGATAAAATTTTGCATGCACAA 57.331 28.000 26.99 21.53 35.80 3.33
606 642 7.668525 TTCATGATAAAATTTTGCATGCACA 57.331 28.000 26.99 12.14 35.80 4.57
607 643 9.217223 GATTTCATGATAAAATTTTGCATGCAC 57.783 29.630 26.99 18.91 35.80 4.57
608 644 8.947115 TGATTTCATGATAAAATTTTGCATGCA 58.053 25.926 26.99 18.46 35.80 3.96
609 645 9.217223 GTGATTTCATGATAAAATTTTGCATGC 57.783 29.630 26.99 11.82 35.80 4.06
621 657 9.844790 GACTTTCACAATGTGATTTCATGATAA 57.155 29.630 17.48 4.22 42.40 1.75
622 658 9.012161 TGACTTTCACAATGTGATTTCATGATA 57.988 29.630 17.48 0.00 42.40 2.15
623 659 7.888424 TGACTTTCACAATGTGATTTCATGAT 58.112 30.769 17.48 0.00 42.40 2.45
624 660 7.274603 TGACTTTCACAATGTGATTTCATGA 57.725 32.000 17.48 0.00 42.40 3.07
626 662 6.588756 GCATGACTTTCACAATGTGATTTCAT 59.411 34.615 17.48 19.19 42.40 2.57
627 663 5.921976 GCATGACTTTCACAATGTGATTTCA 59.078 36.000 17.48 17.96 42.40 2.69
628 664 5.921976 TGCATGACTTTCACAATGTGATTTC 59.078 36.000 17.48 13.33 42.40 2.17
629 665 5.845103 TGCATGACTTTCACAATGTGATTT 58.155 33.333 17.48 4.31 42.40 2.17
630 666 5.456548 TGCATGACTTTCACAATGTGATT 57.543 34.783 17.48 4.68 42.40 2.57
631 667 5.456548 TTGCATGACTTTCACAATGTGAT 57.543 34.783 17.48 1.89 42.40 3.06
632 668 4.915158 TTGCATGACTTTCACAATGTGA 57.085 36.364 12.63 12.63 41.09 3.58
661 697 7.797038 AAAGCATTTTGAAGCTCTGATTTTT 57.203 28.000 0.00 0.00 40.90 1.94
1194 1233 0.319405 AGGGATTTTGCTGCTGTTGC 59.681 50.000 0.00 0.00 40.20 4.17
1269 1308 4.697756 CCGTTGAAGCCGGCCTGA 62.698 66.667 26.15 0.00 38.85 3.86
1295 1334 4.263572 CACCACCAGGCCGGAACA 62.264 66.667 18.74 0.00 39.06 3.18
1381 1426 4.309950 GTTCACCCCGACACCGCT 62.310 66.667 0.00 0.00 0.00 5.52
1449 1497 3.477956 AACCTGACCGACCCCTCCA 62.478 63.158 0.00 0.00 0.00 3.86
1467 1515 5.601583 ATTATGCAGCAAATGATTCACCA 57.398 34.783 0.00 0.00 0.00 4.17
1600 1649 3.314913 GTGGGGGAAATTGCAACAAAAAG 59.685 43.478 0.00 0.00 0.00 2.27
1652 1702 3.432592 CACTCTGAAAGACATGACAGCTG 59.567 47.826 13.48 13.48 38.67 4.24
1726 1778 6.020971 TGCCATTCATCATTATCAGAATGC 57.979 37.500 8.14 5.43 43.57 3.56
1914 1966 4.386867 AAGCAGAATGGCATTCAGAATG 57.613 40.909 34.54 25.86 41.71 2.67
1995 2047 5.559227 GTTCCAAAACAATCACAAAAGCAC 58.441 37.500 0.00 0.00 35.36 4.40
2026 2078 9.188588 ACAGTAATATTAACCGATATGTTCACG 57.811 33.333 0.00 0.00 0.00 4.35
2174 2226 8.715191 AGAGAAACATCAATTAGATCACAGAC 57.285 34.615 0.00 0.00 33.72 3.51
2244 2296 4.356405 TTTTCAGAGGCAACATGAGAGA 57.644 40.909 0.00 0.00 36.16 3.10
2285 2337 5.278022 GGTTAAATCGGGATTTCTGATCTGC 60.278 44.000 9.75 0.00 40.43 4.26
2575 2627 2.368875 AGGTGACACAGGGTAAGTTCTG 59.631 50.000 8.08 0.00 37.07 3.02
2585 2637 1.538512 CAAAGCATGAGGTGACACAGG 59.461 52.381 8.08 0.00 35.76 4.00
2586 2638 1.538512 CCAAAGCATGAGGTGACACAG 59.461 52.381 8.08 0.00 33.32 3.66
2605 2657 1.531602 GGCCCCCTATGCATGTTCC 60.532 63.158 10.16 0.00 0.00 3.62
2623 2675 5.730568 GCCCTGCTTAATTCTGATTAACACG 60.731 44.000 0.00 0.00 34.76 4.49
2862 2914 9.939802 CTCTTTAACCTTATGTACAAGTAACCT 57.060 33.333 0.00 0.00 0.00 3.50
2975 3027 8.958119 ATTTACACACGATATGTACAAGGAAT 57.042 30.769 0.00 0.00 40.64 3.01
2990 3042 7.858382 TGACAGGAAAATTACAATTTACACACG 59.142 33.333 0.56 0.00 37.62 4.49
2999 3051 3.769300 GGCCCTGACAGGAAAATTACAAT 59.231 43.478 23.77 0.00 37.67 2.71
3046 3100 6.463995 TCATTTGTACTTTCCTTGCAGTTT 57.536 33.333 0.00 0.00 0.00 2.66
3146 3200 9.445878 CTATCATGTAGCTATGGTGATCAAATT 57.554 33.333 16.76 0.00 32.31 1.82
3158 3212 6.339730 GCATGCTCTTCTATCATGTAGCTAT 58.660 40.000 11.37 0.00 39.64 2.97
3264 3318 8.597662 TGGACTGTCACTACTTGTAAAATTAC 57.402 34.615 10.38 0.00 0.00 1.89
3423 3477 3.005684 CAGACCAGGAGAGATGCAGATAC 59.994 52.174 0.00 0.00 0.00 2.24
3479 3533 4.562757 CCACAAGCTAGTTGGTAGTTAGCA 60.563 45.833 5.64 0.00 41.67 3.49
3535 3589 4.641396 TGTCTGGTGGTTAGACAGAAATG 58.359 43.478 3.89 0.00 46.92 2.32
3600 3654 3.489738 GGATTCAATCATTTGCCAGACGG 60.490 47.826 0.00 0.00 32.61 4.79
3738 3792 8.354711 AGATAGTCTAAGAACATGTGAACTGA 57.645 34.615 0.00 0.00 0.00 3.41
3934 3988 5.769662 TCTTCCATGTTGACATAAAGTTGCT 59.230 36.000 13.60 0.00 34.26 3.91
3981 4035 9.020731 TGACTCTGACACAACTTCTGTATTATA 57.979 33.333 0.00 0.00 36.10 0.98
4143 4197 9.314321 CATATAAACCTGAAGTCTTTCATACGT 57.686 33.333 0.00 0.00 42.19 3.57
4173 4227 3.617263 GGAACAGCGTCGTCTGAATATTT 59.383 43.478 19.08 6.48 37.51 1.40
4174 4228 3.187700 GGAACAGCGTCGTCTGAATATT 58.812 45.455 19.08 6.76 37.51 1.28
4211 4265 6.558009 AGAGTATTCAAGATTAACGCGTGTA 58.442 36.000 14.98 3.78 0.00 2.90
4234 4288 3.731652 TCCTGCACCAAATGAAACAAG 57.268 42.857 0.00 0.00 0.00 3.16
4547 4601 1.703513 GGTTGGTTCCCTACTCTTGGT 59.296 52.381 0.00 0.00 30.42 3.67
4719 4773 5.897050 AGTCTTCCTCGTCAATATCACTTC 58.103 41.667 0.00 0.00 0.00 3.01
4857 4911 1.935065 CTTGTCGTCAGCTTCGTCGC 61.935 60.000 7.74 0.00 0.00 5.19
4978 5041 1.975680 ACGGTCACATACTTGGGTTCT 59.024 47.619 0.00 0.00 0.00 3.01
4979 5042 2.073816 CACGGTCACATACTTGGGTTC 58.926 52.381 0.00 0.00 0.00 3.62
4982 5045 2.178912 AACACGGTCACATACTTGGG 57.821 50.000 0.00 0.00 0.00 4.12
4992 5055 4.320023 ACTATACATGCAAAACACGGTCA 58.680 39.130 0.00 0.00 0.00 4.02
5015 5078 8.318412 TGTGAGAAGGCTTACAAATATTCTGTA 58.682 33.333 0.00 0.00 37.65 2.74
5035 5098 4.072131 GGCAACAGGATAAAGTTGTGAGA 58.928 43.478 7.08 0.00 45.16 3.27
5085 5148 9.225201 CAACAACGATATCATTTTACCATTCAG 57.775 33.333 3.12 0.00 0.00 3.02
5235 5307 1.134995 GCCTATGCTGTTTTTCCTGCC 60.135 52.381 0.00 0.00 33.53 4.85
5376 5456 6.901300 TGTACTAACTTGATGGAGGGAGTATT 59.099 38.462 0.00 0.00 0.00 1.89
5388 5468 8.204836 AGTGTCTCAACTTTGTACTAACTTGAT 58.795 33.333 10.67 0.00 0.00 2.57
5407 5487 4.092091 CCTGCGTCTCAAAATAAGTGTCTC 59.908 45.833 0.00 0.00 0.00 3.36
5427 5507 1.691196 TGGCAGTTTCAAACTCCCTG 58.309 50.000 11.71 0.00 40.18 4.45
5431 5511 4.574599 AGTTGATGGCAGTTTCAAACTC 57.425 40.909 0.00 0.00 40.46 3.01
5508 5588 6.550938 TGATCATGGTCTAGATGTGTTTCT 57.449 37.500 7.64 0.00 0.00 2.52
5547 5627 5.104235 AGGGGGTATTTTCTGCGTAAGTATT 60.104 40.000 0.00 0.00 41.68 1.89
5903 6010 6.084326 ACACAACAAAATAAGCAGGGTTAG 57.916 37.500 0.00 0.00 0.00 2.34
5904 6011 6.127310 ACAACACAACAAAATAAGCAGGGTTA 60.127 34.615 0.00 0.00 0.00 2.85
5923 6030 7.850492 GCCATGAAAATTTTAGTTCAACAACAC 59.150 33.333 2.75 0.00 37.31 3.32
5929 6036 7.495901 TCACAGCCATGAAAATTTTAGTTCAA 58.504 30.769 2.75 0.00 37.31 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.