AutoCloner

Multiple sequence alignment - TraesCS3A01G337000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G337000	chr3A	100.000	2192	0	0	1	2192	583972886	583975077	0.000000e+00	4048
1	TraesCS3A01G337000	chr3A	78.661	717	118	26	45	751	354832788	354833479	5.550000e-121	444
2	TraesCS3A01G337000	chr3A	85.000	340	49	2	1093	1431	83006016	83005678	5.790000e-91	344
3	TraesCS3A01G337000	chr3A	84.830	323	33	5	3	325	463949667	463949361	5.880000e-81	311
4	TraesCS3A01G337000	chr3A	92.708	96	7	0	927	1022	638791518	638791613	2.930000e-29	139
5	TraesCS3A01G337000	chr2A	88.839	896	74	16	1309	2191	429576286	429575404	0.000000e+00	1077
6	TraesCS3A01G337000	chr2A	93.538	650	27	5	458	1107	429649667	429649033	0.000000e+00	953
7	TraesCS3A01G337000	chr2A	93.385	650	28	5	458	1107	429579898	429579264	0.000000e+00	948
8	TraesCS3A01G337000	chr2A	92.575	431	20	6	1309	1733	429646326	429645902	1.860000e-170	608
9	TraesCS3A01G337000	chr2A	82.517	572	77	15	1	566	485003649	485003095	4.230000e-132	481
10	TraesCS3A01G337000	chr2A	82.168	572	75	17	1	563	117787484	117788037	1.190000e-127	466
11	TraesCS3A01G337000	chr2A	90.722	194	11	5	1621	1808	409718618	409718810	3.610000e-63	252
12	TraesCS3A01G337000	chr2A	90.206	194	12	6	1618	1808	409726682	409726871	1.680000e-61	246
13	TraesCS3A01G337000	chr7A	91.084	572	33	7	1	567	200471835	200472393	0.000000e+00	758
14	TraesCS3A01G337000	chr7A	84.110	365	51	7	1089	1450	259364532	259364892	1.610000e-91	346
15	TraesCS3A01G337000	chr7A	83.288	365	54	7	1089	1450	259393672	259394032	1.620000e-86	329
16	TraesCS3A01G337000	chr7A	91.304	92	3	4	1582	1669	153989291	153989201	1.060000e-23	121
17	TraesCS3A01G337000	chr4D	84.397	564	69	12	4	563	456629790	456630338	8.910000e-149	536
18	TraesCS3A01G337000	chr4D	85.465	344	47	3	1089	1431	147868705	147868364	2.680000e-94	355
19	TraesCS3A01G337000	chr4B	83.944	573	63	14	1	567	350414253	350413704	2.490000e-144	521
20	TraesCS3A01G337000	chr4B	80.855	585	86	20	1	577	287640953	287640387	9.290000e-119	436
21	TraesCS3A01G337000	chr4B	75.979	562	112	21	1644	2192	346736170	346736721	3.590000e-68	268
22	TraesCS3A01G337000	chr3B	85.685	482	54	6	3	483	439389758	439390225	5.440000e-136	494
23	TraesCS3A01G337000	chr3B	81.752	548	77	16	1656	2192	372495768	372496303	9.290000e-119	436
24	TraesCS3A01G337000	chr3B	83.297	455	61	10	1746	2190	238681189	238680740	2.620000e-109	405
25	TraesCS3A01G337000	chr3B	83.077	455	60	10	1746	2192	238687175	238686730	4.380000e-107	398
26	TraesCS3A01G337000	chr2D	84.921	504	59	9	1	500	197228189	197227699	5.440000e-136	494
27	TraesCS3A01G337000	chr2D	92.657	286	16	4	1522	1807	349228523	349228803	7.290000e-110	407
28	TraesCS3A01G337000	chr2D	82.479	468	63	10	1	465	602070716	602071167	2.040000e-105	392
29	TraesCS3A01G337000	chr2D	86.648	352	44	3	1081	1431	123120387	123120736	9.490000e-104	387
30	TraesCS3A01G337000	chr2D	86.047	344	45	3	1089	1431	123126362	123126703	1.240000e-97	366
31	TraesCS3A01G337000	chr2D	89.333	300	18	5	1509	1808	181835433	181835718	4.450000e-97	364
32	TraesCS3A01G337000	chr2D	89.547	287	16	5	1522	1808	181871087	181871359	3.460000e-93	351
33	TraesCS3A01G337000	chr1D	78.765	810	112	43	1	787	112162041	112162813	2.530000e-134	488
34	TraesCS3A01G337000	chr1D	79.833	600	83	27	1	585	78218618	78218042	9.420000e-109	403
35	TraesCS3A01G337000	chr1D	85.174	344	48	3	1089	1431	126863423	126863082	1.250000e-92	350
36	TraesCS3A01G337000	chr3D	82.632	570	80	10	1	567	161611680	161612233	9.100000e-134	486
37	TraesCS3A01G337000	chr3D	84.180	512	58	15	1	506	103747770	103747276	1.970000e-130	475
38	TraesCS3A01G337000	chr6A	82.168	572	79	15	1	566	216591605	216591051	9.160000e-129	470
39	TraesCS3A01G337000	chr6A	88.298	188	19	2	915	1102	180918248	180918064	2.830000e-54	222
40	TraesCS3A01G337000	chr5A	79.167	672	97	33	1	655	219161264	219161909	2.010000e-115	425
41	TraesCS3A01G337000	chr7B	89.666	329	30	4	1867	2192	338110261	338109934	1.210000e-112	416
42	TraesCS3A01G337000	chr7B	89.394	330	32	3	1865	2192	342354058	342354386	1.570000e-111	412
43	TraesCS3A01G337000	chr7B	76.283	565	103	27	1643	2189	18290970	18290419	2.770000e-69	272
44	TraesCS3A01G337000	chr1B	89.815	324	29	4	1872	2192	565577472	565577794	1.570000e-111	412
45	TraesCS3A01G337000	chr7D	82.278	474	65	18	149	613	203290514	203290977	2.040000e-105	392
46	TraesCS3A01G337000	chr4A	80.725	524	77	16	1682	2191	467583525	467583012	9.490000e-104	387
47	TraesCS3A01G337000	chr4A	84.488	361	50	6	1093	1450	211067656	211067299	3.460000e-93	351
48	TraesCS3A01G337000	chr4A	81.292	449	70	10	1746	2185	428482712	428483155	3.460000e-93	351
49	TraesCS3A01G337000	chr5B	84.366	339	45	8	1089	1424	216677114	216676781	2.100000e-85	326

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G337000	chr3A	583972886	583975077	2191	False	4048.0	4048	100.0000	1	2192	1	chr3A.!!$F2	2191
1	TraesCS3A01G337000	chr3A	354832788	354833479	691	False	444.0	444	78.6610	45	751	1	chr3A.!!$F1	706
2	TraesCS3A01G337000	chr2A	429575404	429579898	4494	True	1012.5	1077	91.1120	458	2191	2	chr2A.!!$R2	1733
3	TraesCS3A01G337000	chr2A	429645902	429649667	3765	True	780.5	953	93.0565	458	1733	2	chr2A.!!$R3	1275
4	TraesCS3A01G337000	chr2A	485003095	485003649	554	True	481.0	481	82.5170	1	566	1	chr2A.!!$R1	565
5	TraesCS3A01G337000	chr2A	117787484	117788037	553	False	466.0	466	82.1680	1	563	1	chr2A.!!$F1	562
6	TraesCS3A01G337000	chr7A	200471835	200472393	558	False	758.0	758	91.0840	1	567	1	chr7A.!!$F1	566
7	TraesCS3A01G337000	chr4D	456629790	456630338	548	False	536.0	536	84.3970	4	563	1	chr4D.!!$F1	559
8	TraesCS3A01G337000	chr4B	350413704	350414253	549	True	521.0	521	83.9440	1	567	1	chr4B.!!$R2	566
9	TraesCS3A01G337000	chr4B	287640387	287640953	566	True	436.0	436	80.8550	1	577	1	chr4B.!!$R1	576
10	TraesCS3A01G337000	chr4B	346736170	346736721	551	False	268.0	268	75.9790	1644	2192	1	chr4B.!!$F1	548
11	TraesCS3A01G337000	chr3B	372495768	372496303	535	False	436.0	436	81.7520	1656	2192	1	chr3B.!!$F1	536
12	TraesCS3A01G337000	chr1D	112162041	112162813	772	False	488.0	488	78.7650	1	787	1	chr1D.!!$F1	786
13	TraesCS3A01G337000	chr1D	78218042	78218618	576	True	403.0	403	79.8330	1	585	1	chr1D.!!$R1	584
14	TraesCS3A01G337000	chr3D	161611680	161612233	553	False	486.0	486	82.6320	1	567	1	chr3D.!!$F1	566
15	TraesCS3A01G337000	chr6A	216591051	216591605	554	True	470.0	470	82.1680	1	566	1	chr6A.!!$R2	565
16	TraesCS3A01G337000	chr5A	219161264	219161909	645	False	425.0	425	79.1670	1	655	1	chr5A.!!$F1	654
17	TraesCS3A01G337000	chr7B	18290419	18290970	551	True	272.0	272	76.2830	1643	2189	1	chr7B.!!$R1	546
18	TraesCS3A01G337000	chr4A	467583012	467583525	513	True	387.0	387	80.7250	1682	2191	1	chr4A.!!$R2	509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
970	1040	0.107945	CACCTCCTGCTACAGAAGGC	60.108	60.0	0.0	0.0	40.9	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1981	4883	0.457166	CAGATGAACGGACCGCGTAA	60.457	55.0	15.39	0.0	0.0	3.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	6.914259	TCTATTCTGGTATGAGACGCAATAG	58.086	40.000	0.00	0.00	0.00	1.73
73	85	4.756642	CACACTCTACTTCAGGCATCAAAA	59.243	41.667	0.00	0.00	0.00	2.44
114	130	6.819284	TGAAACTTTCGTACCCTCTTAGAAA	58.181	36.000	0.00	0.00	0.00	2.52
116	132	4.818642	ACTTTCGTACCCTCTTAGAAAGC	58.181	43.478	13.93	0.00	46.78	3.51
117	133	4.527427	ACTTTCGTACCCTCTTAGAAAGCT	59.473	41.667	13.93	0.00	46.78	3.74
118	134	4.715527	TTCGTACCCTCTTAGAAAGCTC	57.284	45.455	0.00	0.00	0.00	4.09
119	135	3.022406	TCGTACCCTCTTAGAAAGCTCC	58.978	50.000	0.00	0.00	0.00	4.70
120	136	2.101082	CGTACCCTCTTAGAAAGCTCCC	59.899	54.545	0.00	0.00	0.00	4.30
121	137	1.196012	ACCCTCTTAGAAAGCTCCCG	58.804	55.000	0.00	0.00	0.00	5.14
122	138	1.273098	ACCCTCTTAGAAAGCTCCCGA	60.273	52.381	0.00	0.00	0.00	5.14
123	139	2.043227	CCCTCTTAGAAAGCTCCCGAT	58.957	52.381	0.00	0.00	0.00	4.18
124	140	2.224161	CCCTCTTAGAAAGCTCCCGATG	60.224	54.545	0.00	0.00	0.00	3.84
130	146	1.078143	AAAGCTCCCGATGTGCTCC	60.078	57.895	0.00	0.00	42.76	4.70
192	208	1.621814	TCTTCCCCTGAGTTAACCGTG	59.378	52.381	0.88	0.00	0.00	4.94
302	322	3.181479	ACAACTTCATCATGATGCATGGC	60.181	43.478	27.68	0.00	41.66	4.40
347	368	3.119602	CGAGTGGGATCAACTACTTCGAA	60.120	47.826	0.00	0.00	0.00	3.71
392	414	6.268566	AGATCCGTTAGAATTACGTAACCAC	58.731	40.000	10.81	5.24	37.30	4.16
507	538	0.484212	CCCCTAATGGTGGCCATGAT	59.516	55.000	9.72	0.06	44.40	2.45
862	932	7.861176	TTTGCTATTAAAACTAAAGGCAACG	57.139	32.000	0.00	0.00	46.39	4.10
865	935	6.376018	TGCTATTAAAACTAAAGGCAACGGAT	59.624	34.615	0.00	0.00	46.39	4.18
959	1029	1.293498	CACGTTCCTCCACCTCCTG	59.707	63.158	0.00	0.00	0.00	3.86
960	1030	2.266055	CGTTCCTCCACCTCCTGC	59.734	66.667	0.00	0.00	0.00	4.85
961	1031	2.286523	CGTTCCTCCACCTCCTGCT	61.287	63.158	0.00	0.00	0.00	4.24
962	1032	0.970937	CGTTCCTCCACCTCCTGCTA	60.971	60.000	0.00	0.00	0.00	3.49
963	1033	0.537653	GTTCCTCCACCTCCTGCTAC	59.462	60.000	0.00	0.00	0.00	3.58
964	1034	0.116342	TTCCTCCACCTCCTGCTACA	59.884	55.000	0.00	0.00	0.00	2.74
965	1035	0.324738	TCCTCCACCTCCTGCTACAG	60.325	60.000	0.00	0.00	0.00	2.74
966	1036	0.324738	CCTCCACCTCCTGCTACAGA	60.325	60.000	0.00	0.00	32.44	3.41
967	1037	1.561643	CTCCACCTCCTGCTACAGAA	58.438	55.000	0.00	0.00	32.44	3.02
968	1038	1.480137	CTCCACCTCCTGCTACAGAAG	59.520	57.143	0.00	0.00	32.44	2.85
969	1039	0.539051	CCACCTCCTGCTACAGAAGG	59.461	60.000	0.00	0.00	42.59	3.46
970	1040	0.107945	CACCTCCTGCTACAGAAGGC	60.108	60.000	0.00	0.00	40.90	4.35
971	1041	0.545309	ACCTCCTGCTACAGAAGGCA	60.545	55.000	0.00	0.00	40.90	4.75
1041	1111	2.514824	GGCATCCACCCGAGCTTC	60.515	66.667	0.00	0.00	0.00	3.86
1065	1135	3.235200	AGAAGATAAGATCGACCCCCAG	58.765	50.000	0.00	0.00	0.00	4.45
1087	1157	1.823899	CCCGCAATGAACCCTAGCC	60.824	63.158	0.00	0.00	0.00	3.93
1100	1170	1.223763	CTAGCCCCGTTTTCCCCTC	59.776	63.158	0.00	0.00	0.00	4.30
1107	1177	1.218316	CGTTTTCCCCTCTCCCTCG	59.782	63.158	0.00	0.00	0.00	4.63
1108	1178	1.078356	GTTTTCCCCTCTCCCTCGC	60.078	63.158	0.00	0.00	0.00	5.03
1138	4019	1.132453	TCTCCACAACGATAGCAGTCG	59.868	52.381	8.91	8.91	46.56	4.18
1139	4020	0.457853	TCCACAACGATAGCAGTCGC	60.458	55.000	10.19	0.00	45.12	5.19
1140	4021	0.735978	CCACAACGATAGCAGTCGCA	60.736	55.000	10.19	0.00	45.12	5.10
1141	4022	0.642291	CACAACGATAGCAGTCGCAG	59.358	55.000	10.19	6.19	45.12	5.18
1248	4129	3.067180	CCTTCGTCTACGCTATTGGGTTA	59.933	47.826	1.72	0.00	40.03	2.85
1254	4135	0.462789	ACGCTATTGGGTTAGACCGG	59.537	55.000	0.00	0.00	39.83	5.28
1298	4179	4.818835	GTCGTCCCCGTCGCGTAC	62.819	72.222	5.77	1.94	35.01	3.67
1300	4181	4.183686	CGTCCCCGTCGCGTACAT	62.184	66.667	5.77	0.00	0.00	2.29
1301	4182	2.278401	GTCCCCGTCGCGTACATC	60.278	66.667	5.77	0.00	0.00	3.06
1302	4183	2.438975	TCCCCGTCGCGTACATCT	60.439	61.111	5.77	0.00	0.00	2.90
1303	4184	2.025727	CCCCGTCGCGTACATCTC	59.974	66.667	5.77	0.00	0.00	2.75
1304	4185	2.025727	CCCGTCGCGTACATCTCC	59.974	66.667	5.77	0.00	0.00	3.71
1305	4186	2.352001	CCGTCGCGTACATCTCCG	60.352	66.667	5.77	0.00	0.00	4.63
1306	4187	2.352001	CGTCGCGTACATCTCCGG	60.352	66.667	5.77	0.00	0.00	5.14
1307	4188	2.654404	GTCGCGTACATCTCCGGC	60.654	66.667	5.77	0.00	0.00	6.13
1308	4189	3.896133	TCGCGTACATCTCCGGCC	61.896	66.667	5.77	0.00	0.00	6.13
1311	4192	4.944372	CGTACATCTCCGGCCGCC	62.944	72.222	22.85	0.00	0.00	6.13
1396	4277	0.618968	AGCTTCTCCACCGGATCCTT	60.619	55.000	9.46	0.00	0.00	3.36
1479	4360	1.014564	GCTCGAGCCCTTGTGTGTAC	61.015	60.000	27.22	0.00	34.31	2.90
1483	4364	1.566018	GAGCCCTTGTGTGTACGTGC	61.566	60.000	0.00	0.00	0.00	5.34
1484	4365	1.890041	GCCCTTGTGTGTACGTGCA	60.890	57.895	0.82	0.82	0.00	4.57
1520	4401	1.227350	CTGCTATGCTACTGCGCCA	60.227	57.895	4.18	0.00	43.34	5.69
1528	4409	4.312941	TACTGCGCCACTGCTGCA	62.313	61.111	4.18	0.88	42.01	4.41
1542	4423	3.047718	CTGCAGCATCCGCCTGTTG	62.048	63.158	0.00	0.00	39.83	3.33
1658	4545	1.439679	TTGTGTGCGTGTGTGTACAA	58.560	45.000	0.00	0.00	38.82	2.41
1981	4883	5.500234	TCAGAAAAATCCAGTGAATCCGAT	58.500	37.500	0.00	0.00	0.00	4.18
2071	4973	0.757561	TCTGACACAGGTCCGGAACA	60.758	55.000	24.28	0.00	43.65	3.18
2107	5009	0.259356	TTGTTTTCCCCCTTCACCGT	59.741	50.000	0.00	0.00	0.00	4.83
2169	5071	7.660112	TCTTATTGCCATGTTATGCTTTATGG	58.340	34.615	0.00	0.00	42.30	2.74
2185	5089	5.743872	GCTTTATGGTGCTATGTTGCTTTAC	59.256	40.000	0.00	0.00	0.00	2.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	5.554696	GCAACGAGAATAACTATTGCGTCTC	60.555	44.000	0.00	0.00	39.38	3.36
24	25	3.371285	GGGTTCAGAGCAACGAGAATAAC	59.629	47.826	0.00	0.00	0.00	1.89
73	85	2.172851	TCAAACGGGTTAGCAATCGT	57.827	45.000	0.00	0.00	37.45	3.73
114	130	3.474570	GGGAGCACATCGGGAGCT	61.475	66.667	0.00	0.00	42.17	4.09
115	131	4.899239	CGGGAGCACATCGGGAGC	62.899	72.222	0.00	0.00	0.00	4.70
116	132	2.502492	ATCGGGAGCACATCGGGAG	61.502	63.158	0.00	0.00	0.00	4.30
117	133	2.443952	ATCGGGAGCACATCGGGA	60.444	61.111	0.00	0.00	0.00	5.14
118	134	2.280389	CATCGGGAGCACATCGGG	60.280	66.667	0.00	0.00	0.00	5.14
119	135	1.884464	CACATCGGGAGCACATCGG	60.884	63.158	0.00	0.00	0.00	4.18
120	136	0.740868	AACACATCGGGAGCACATCG	60.741	55.000	0.00	0.00	0.00	3.84
121	137	1.398390	GAAACACATCGGGAGCACATC	59.602	52.381	0.00	0.00	0.00	3.06
122	138	1.271325	TGAAACACATCGGGAGCACAT	60.271	47.619	0.00	0.00	0.00	3.21
123	139	0.107643	TGAAACACATCGGGAGCACA	59.892	50.000	0.00	0.00	0.00	4.57
124	140	1.131126	CATGAAACACATCGGGAGCAC	59.869	52.381	0.00	0.00	37.07	4.40
130	146	5.331902	GGTTGATTACATGAAACACATCGG	58.668	41.667	0.00	0.00	37.07	4.18
302	322	3.922910	TGATGTCTTCAGTTCTCTGCAG	58.077	45.455	7.63	7.63	41.10	4.41
347	368	3.553828	TCTCGTCCTTGGTTGTTCTTT	57.446	42.857	0.00	0.00	0.00	2.52
392	414	2.504585	GGTAGAGTAAGGGGGAAGGTTG	59.495	54.545	0.00	0.00	0.00	3.77
456	483	2.505819	AGCAAGATTCTCGGGGTGTTAT	59.494	45.455	0.00	0.00	0.00	1.89
837	907	7.544217	CCGTTGCCTTTAGTTTTAATAGCAAAT	59.456	33.333	0.00	0.00	38.14	2.32
943	1013	0.970937	TAGCAGGAGGTGGAGGAACG	60.971	60.000	0.00	0.00	0.00	3.95
959	1029	2.124529	GCCCCTGCCTTCTGTAGC	60.125	66.667	0.00	0.00	0.00	3.58
1015	1085	4.501714	GTGGATGCCCGACGCGTA	62.502	66.667	13.97	0.00	42.08	4.42
1041	1111	2.229302	GGGGTCGATCTTATCTTCTCCG	59.771	54.545	0.00	0.00	0.00	4.63
1050	1120	1.764854	GGCCTGGGGGTCGATCTTA	60.765	63.158	0.00	0.00	34.45	2.10
1072	1142	1.823899	CGGGGCTAGGGTTCATTGC	60.824	63.158	0.00	0.00	0.00	3.56
1076	1146	0.037160	GAAAACGGGGCTAGGGTTCA	59.963	55.000	0.00	0.00	0.00	3.18
1087	1157	1.911702	GAGGGAGAGGGGAAAACGGG	61.912	65.000	0.00	0.00	0.00	5.28
1100	1170	1.671901	GAAGAGGACCAGCGAGGGAG	61.672	65.000	0.00	0.00	43.89	4.30
1107	1177	0.687354	TTGTGGAGAAGAGGACCAGC	59.313	55.000	0.00	0.00	34.21	4.85
1108	1178	1.337260	CGTTGTGGAGAAGAGGACCAG	60.337	57.143	0.00	0.00	34.21	4.00
1187	4068	2.741092	TGGACGTCCCAGCTCAAC	59.259	61.111	31.19	3.87	40.82	3.18
1195	4076	2.283529	TGAAGCTCCTGGACGTCCC	61.284	63.158	31.19	15.56	34.29	4.46
1199	4080	1.374758	GTGGTGAAGCTCCTGGACG	60.375	63.158	0.00	0.00	0.00	4.79
1248	4129	3.326385	TACATGGCCTCCCCGGTCT	62.326	63.158	3.32	0.00	38.58	3.85
1285	4166	2.438975	AGATGTACGCGACGGGGA	60.439	61.111	15.93	4.47	0.00	4.81
1286	4167	2.025727	GAGATGTACGCGACGGGG	59.974	66.667	15.93	0.00	0.00	5.73
1287	4168	2.025727	GGAGATGTACGCGACGGG	59.974	66.667	15.93	10.72	0.00	5.28
1288	4169	2.352001	CGGAGATGTACGCGACGG	60.352	66.667	15.93	0.00	0.00	4.79
1289	4170	2.352001	CCGGAGATGTACGCGACG	60.352	66.667	15.93	3.74	0.00	5.12
1290	4171	2.654404	GCCGGAGATGTACGCGAC	60.654	66.667	15.93	7.50	0.00	5.19
1291	4172	3.896133	GGCCGGAGATGTACGCGA	61.896	66.667	15.93	0.00	0.00	5.87
1294	4175	4.944372	GGCGGCCGGAGATGTACG	62.944	72.222	29.38	0.00	0.00	3.67
1295	4176	4.944372	CGGCGGCCGGAGATGTAC	62.944	72.222	32.80	6.97	44.15	2.90
1308	4189	4.525576	TCGGAATCGACGACGGCG	62.526	66.667	19.07	19.07	40.88	6.46
1361	4242	3.207354	CTCACCGTGGAGCCGTAT	58.793	61.111	0.00	0.00	0.00	3.06
1396	4277	0.325671	AGATCGAGGCAGGGAAAGGA	60.326	55.000	0.00	0.00	0.00	3.36
1808	4703	3.393278	GTCAAATAGGGGTGGCCTACATA	59.607	47.826	3.32	0.00	0.00	2.29
1981	4883	0.457166	CAGATGAACGGACCGCGTAA	60.457	55.000	15.39	0.00	0.00	3.18
2107	5009	4.580167	ACCTAACGTATGGCTACACGATAA	59.420	41.667	8.22	0.00	40.56	1.75

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.