Multiple sequence alignment - TraesCS3A01G336900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G336900 chr3A 100.000 3080 0 0 1 3080 583925709 583928788 0.000000e+00 5688.0
1 TraesCS3A01G336900 chr3A 95.745 94 4 0 2490 2583 583928258 583928351 5.320000e-33 152.0
2 TraesCS3A01G336900 chr3D 94.861 1226 49 3 965 2190 442754713 442755924 0.000000e+00 1903.0
3 TraesCS3A01G336900 chr3D 81.092 751 74 34 1 710 442753622 442754345 3.490000e-149 538.0
4 TraesCS3A01G336900 chr3B 92.149 1312 72 13 920 2231 580205669 580206949 0.000000e+00 1823.0
5 TraesCS3A01G336900 chr3B 80.518 811 65 43 149 911 580204858 580205623 1.260000e-148 536.0
6 TraesCS3A01G336900 chr3B 90.253 277 26 1 920 1196 828460415 828460690 8.120000e-96 361.0
7 TraesCS3A01G336900 chr4D 93.597 531 33 1 2550 3080 230978937 230978408 0.000000e+00 791.0
8 TraesCS3A01G336900 chr4D 74.906 1064 202 46 1056 2079 310111343 310110305 2.840000e-115 425.0
9 TraesCS3A01G336900 chr1D 92.844 531 36 2 2550 3080 57212236 57211708 0.000000e+00 769.0
10 TraesCS3A01G336900 chr1D 93.373 498 33 0 2580 3077 165207234 165207731 0.000000e+00 737.0
11 TraesCS3A01G336900 chr1A 92.655 531 39 0 2550 3080 32391239 32390709 0.000000e+00 765.0
12 TraesCS3A01G336900 chr1A 91.525 531 45 0 2550 3080 177980248 177979718 0.000000e+00 732.0
13 TraesCS3A01G336900 chr1A 91.762 522 43 0 2559 3080 32386991 32386470 0.000000e+00 726.0
14 TraesCS3A01G336900 chr6B 93.413 501 33 0 2580 3080 713952737 713952237 0.000000e+00 743.0
15 TraesCS3A01G336900 chr6B 86.567 134 13 2 2425 2553 713952807 713952674 3.200000e-30 143.0
16 TraesCS3A01G336900 chr6B 85.185 135 7 6 2401 2523 664532029 664532162 3.220000e-25 126.0
17 TraesCS3A01G336900 chr6A 93.413 501 33 0 2580 3080 572858569 572859069 0.000000e+00 743.0
18 TraesCS3A01G336900 chr6A 91.667 528 44 0 2550 3077 602228433 602228960 0.000000e+00 732.0
19 TraesCS3A01G336900 chr4B 75.023 1073 194 53 1056 2079 387511510 387510463 2.190000e-116 429.0
20 TraesCS3A01G336900 chr7B 89.209 278 29 1 919 1196 532455710 532455434 2.270000e-91 346.0
21 TraesCS3A01G336900 chr7B 81.270 315 16 11 632 911 532456061 532455755 6.690000e-52 215.0
22 TraesCS3A01G336900 chr4A 78.156 499 87 18 1592 2079 164626509 164626996 6.460000e-77 298.0
23 TraesCS3A01G336900 chr2D 87.402 127 10 3 2402 2523 577496738 577496863 1.150000e-29 141.0
24 TraesCS3A01G336900 chr2A 81.148 122 16 4 2407 2521 626614244 626614365 1.180000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G336900 chr3A 583925709 583928788 3079 False 2920.0 5688 97.8725 1 3080 2 chr3A.!!$F1 3079
1 TraesCS3A01G336900 chr3D 442753622 442755924 2302 False 1220.5 1903 87.9765 1 2190 2 chr3D.!!$F1 2189
2 TraesCS3A01G336900 chr3B 580204858 580206949 2091 False 1179.5 1823 86.3335 149 2231 2 chr3B.!!$F2 2082
3 TraesCS3A01G336900 chr4D 230978408 230978937 529 True 791.0 791 93.5970 2550 3080 1 chr4D.!!$R1 530
4 TraesCS3A01G336900 chr4D 310110305 310111343 1038 True 425.0 425 74.9060 1056 2079 1 chr4D.!!$R2 1023
5 TraesCS3A01G336900 chr1D 57211708 57212236 528 True 769.0 769 92.8440 2550 3080 1 chr1D.!!$R1 530
6 TraesCS3A01G336900 chr1A 32386470 32391239 4769 True 745.5 765 92.2085 2550 3080 2 chr1A.!!$R2 530
7 TraesCS3A01G336900 chr1A 177979718 177980248 530 True 732.0 732 91.5250 2550 3080 1 chr1A.!!$R1 530
8 TraesCS3A01G336900 chr6B 713952237 713952807 570 True 443.0 743 89.9900 2425 3080 2 chr6B.!!$R1 655
9 TraesCS3A01G336900 chr6A 572858569 572859069 500 False 743.0 743 93.4130 2580 3080 1 chr6A.!!$F1 500
10 TraesCS3A01G336900 chr6A 602228433 602228960 527 False 732.0 732 91.6670 2550 3077 1 chr6A.!!$F2 527
11 TraesCS3A01G336900 chr4B 387510463 387511510 1047 True 429.0 429 75.0230 1056 2079 1 chr4B.!!$R1 1023
12 TraesCS3A01G336900 chr7B 532455434 532456061 627 True 280.5 346 85.2395 632 1196 2 chr7B.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 1061 0.030504 TTGTGTGACAAATGCTGCCG 59.969 50.0 0.0 0.0 34.76 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2272 2575 0.027716 GATCGCGCGAGTAGAACAGA 59.972 55.0 36.99 11.1 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.161831 GCTACATGTTGAGCGCACA 58.838 52.632 11.47 6.87 0.00 4.57
73 74 1.862602 GCCCCACTAACACCAAAGCG 61.863 60.000 0.00 0.00 0.00 4.68
74 75 0.250553 CCCCACTAACACCAAAGCGA 60.251 55.000 0.00 0.00 0.00 4.93
80 81 2.034179 ACTAACACCAAAGCGAAAAGGC 59.966 45.455 0.00 0.00 0.00 4.35
86 87 2.167487 ACCAAAGCGAAAAGGCAAAAGA 59.833 40.909 0.00 0.00 34.64 2.52
88 89 4.038642 ACCAAAGCGAAAAGGCAAAAGATA 59.961 37.500 0.00 0.00 34.64 1.98
101 102 3.424433 GCAAAAGATACAGGTGTACGTGC 60.424 47.826 0.00 0.00 35.33 5.34
124 125 1.672881 GCATACGGACGTACCACTACT 59.327 52.381 6.73 0.00 38.90 2.57
130 131 1.542915 GGACGTACCACTACTGCAAGA 59.457 52.381 0.00 0.00 36.45 3.02
163 174 4.500545 CGTCCTCTGCTTATTAGTGCTCAT 60.501 45.833 0.00 0.00 0.00 2.90
164 175 4.987912 GTCCTCTGCTTATTAGTGCTCATC 59.012 45.833 0.00 0.00 0.00 2.92
165 176 4.898265 TCCTCTGCTTATTAGTGCTCATCT 59.102 41.667 0.00 0.00 0.00 2.90
219 237 4.697756 CGACCAGGGCAAAGGCGA 62.698 66.667 0.00 0.00 42.47 5.54
277 295 1.102222 GCGTCCACCCGAGTCTATCT 61.102 60.000 0.00 0.00 0.00 1.98
279 297 2.780714 CGTCCACCCGAGTCTATCTAT 58.219 52.381 0.00 0.00 0.00 1.98
280 298 2.743126 CGTCCACCCGAGTCTATCTATC 59.257 54.545 0.00 0.00 0.00 2.08
281 299 3.557475 CGTCCACCCGAGTCTATCTATCT 60.557 52.174 0.00 0.00 0.00 1.98
282 300 4.322574 CGTCCACCCGAGTCTATCTATCTA 60.323 50.000 0.00 0.00 0.00 1.98
283 301 5.627272 CGTCCACCCGAGTCTATCTATCTAT 60.627 48.000 0.00 0.00 0.00 1.98
284 302 5.818857 GTCCACCCGAGTCTATCTATCTATC 59.181 48.000 0.00 0.00 0.00 2.08
285 303 5.104444 TCCACCCGAGTCTATCTATCTATCC 60.104 48.000 0.00 0.00 0.00 2.59
286 304 5.339282 CCACCCGAGTCTATCTATCTATCCA 60.339 48.000 0.00 0.00 0.00 3.41
287 305 5.587043 CACCCGAGTCTATCTATCTATCCAC 59.413 48.000 0.00 0.00 0.00 4.02
288 306 4.812091 CCCGAGTCTATCTATCTATCCACG 59.188 50.000 0.00 0.00 0.00 4.94
289 307 5.421277 CCGAGTCTATCTATCTATCCACGT 58.579 45.833 0.00 0.00 0.00 4.49
290 308 5.292345 CCGAGTCTATCTATCTATCCACGTG 59.708 48.000 9.08 9.08 0.00 4.49
291 309 5.870433 CGAGTCTATCTATCTATCCACGTGT 59.130 44.000 15.65 0.00 0.00 4.49
292 310 7.034397 CGAGTCTATCTATCTATCCACGTGTA 58.966 42.308 15.65 0.00 0.00 2.90
293 311 7.221259 CGAGTCTATCTATCTATCCACGTGTAG 59.779 44.444 15.65 10.66 0.00 2.74
294 312 8.136563 AGTCTATCTATCTATCCACGTGTAGA 57.863 38.462 15.65 15.71 0.00 2.59
312 330 6.197096 CGTGTAGAGTAAAACGGCGTTATTAT 59.803 38.462 27.05 14.64 32.55 1.28
313 331 7.253750 CGTGTAGAGTAAAACGGCGTTATTATT 60.254 37.037 27.05 20.14 32.55 1.40
314 332 9.019764 GTGTAGAGTAAAACGGCGTTATTATTA 57.980 33.333 27.05 17.22 0.00 0.98
315 333 9.579768 TGTAGAGTAAAACGGCGTTATTATTAA 57.420 29.630 27.05 7.38 0.00 1.40
323 341 9.940166 AAAACGGCGTTATTATTAAATTAGAGG 57.060 29.630 27.05 0.00 0.00 3.69
374 395 2.043450 CTCCCTCCGAGGCAGTCT 60.043 66.667 9.17 0.00 34.67 3.24
375 396 2.043852 TCCCTCCGAGGCAGTCTC 60.044 66.667 9.17 0.00 39.10 3.36
376 397 3.151022 CCCTCCGAGGCAGTCTCC 61.151 72.222 9.17 0.00 39.30 3.71
377 398 3.522731 CCTCCGAGGCAGTCTCCG 61.523 72.222 0.18 0.00 39.30 4.63
378 399 4.200283 CTCCGAGGCAGTCTCCGC 62.200 72.222 0.00 0.00 39.30 5.54
405 432 3.579302 CCCCAAGCCACACCCAGA 61.579 66.667 0.00 0.00 0.00 3.86
439 466 0.033642 GCACGCTTCCCCTCCTATAC 59.966 60.000 0.00 0.00 0.00 1.47
442 469 2.368875 CACGCTTCCCCTCCTATACAAT 59.631 50.000 0.00 0.00 0.00 2.71
451 478 2.830321 CCTCCTATACAATACGTCCCCC 59.170 54.545 0.00 0.00 0.00 5.40
485 512 1.977854 AGGCCAGAAAATTCCCCAAAC 59.022 47.619 5.01 0.00 0.00 2.93
498 530 0.684535 CCCAAACCAAACCACATCCC 59.315 55.000 0.00 0.00 0.00 3.85
501 533 1.618343 CAAACCAAACCACATCCCCTC 59.382 52.381 0.00 0.00 0.00 4.30
505 537 1.151361 AAACCACATCCCCTCCCCT 60.151 57.895 0.00 0.00 0.00 4.79
515 558 3.093172 CCTCCCCTTCCCTGCTCC 61.093 72.222 0.00 0.00 0.00 4.70
573 632 2.740055 GTGCGGTGCTGTCTGGAG 60.740 66.667 0.00 0.00 0.00 3.86
574 633 4.687215 TGCGGTGCTGTCTGGAGC 62.687 66.667 0.00 0.00 39.62 4.70
575 634 4.687215 GCGGTGCTGTCTGGAGCA 62.687 66.667 0.00 0.00 46.87 4.26
598 657 3.295228 CTTGTTCGCGCTCGGGTTG 62.295 63.158 5.56 0.00 36.13 3.77
743 839 4.492611 CCCGGTTCAGTTTCTAGTCTTAC 58.507 47.826 0.00 0.00 0.00 2.34
776 872 6.558009 CAGTACTGTTCCATGGATGAATTTG 58.442 40.000 17.06 5.78 0.00 2.32
780 876 5.136816 TGTTCCATGGATGAATTTGTGTG 57.863 39.130 17.06 0.00 0.00 3.82
790 910 3.351740 TGAATTTGTGTGTGTGTGGAGT 58.648 40.909 0.00 0.00 0.00 3.85
809 929 4.095483 GGAGTGATTCAGTTGCATTGTAGG 59.905 45.833 0.00 0.00 0.00 3.18
810 930 4.910195 AGTGATTCAGTTGCATTGTAGGA 58.090 39.130 0.00 0.00 0.00 2.94
812 932 4.697352 GTGATTCAGTTGCATTGTAGGAGT 59.303 41.667 0.00 0.00 0.00 3.85
813 933 5.874810 GTGATTCAGTTGCATTGTAGGAGTA 59.125 40.000 0.00 0.00 0.00 2.59
814 934 5.874810 TGATTCAGTTGCATTGTAGGAGTAC 59.125 40.000 0.00 0.00 0.00 2.73
834 954 9.356433 GGAGTACTAGTTGTAGAGACAATTTTC 57.644 37.037 0.00 0.00 46.98 2.29
864 984 1.133790 GATTGGATGTGTCTTGCTGGC 59.866 52.381 0.00 0.00 0.00 4.85
865 985 0.111061 TTGGATGTGTCTTGCTGGCT 59.889 50.000 0.00 0.00 0.00 4.75
866 986 0.321919 TGGATGTGTCTTGCTGGCTC 60.322 55.000 0.00 0.00 0.00 4.70
867 987 0.321919 GGATGTGTCTTGCTGGCTCA 60.322 55.000 0.00 0.00 0.00 4.26
868 988 1.085091 GATGTGTCTTGCTGGCTCAG 58.915 55.000 0.00 0.00 34.12 3.35
885 1005 2.817396 GCTCAGCTCAGGCCGTTC 60.817 66.667 0.00 0.00 39.73 3.95
916 1061 0.030504 TTGTGTGACAAATGCTGCCG 59.969 50.000 0.00 0.00 34.76 5.69
933 1090 1.134788 GCCGCCTTCTTAGCTCTTACA 60.135 52.381 0.00 0.00 0.00 2.41
963 1218 7.641802 GCTACTGTTCTTGTTTCAGAAAAGAAG 59.358 37.037 9.44 9.05 43.58 2.85
979 1234 0.384353 GAAGTTGCTGGTTCGTTCGC 60.384 55.000 0.00 0.00 0.00 4.70
983 1238 4.430423 GCTGGTTCGTTCGCAGCG 62.430 66.667 9.06 9.06 0.00 5.18
989 1244 1.443194 TTCGTTCGCAGCGGTCTAC 60.443 57.895 16.42 7.51 0.00 2.59
1151 1406 4.081030 CGTGTGCAGGCGCTTCAG 62.081 66.667 7.64 0.00 39.64 3.02
1935 2238 1.811266 CCTGGTCGTCATCAAGCCG 60.811 63.158 0.00 0.00 0.00 5.52
1939 2242 1.080093 GTCGTCATCAAGCCGTCCA 60.080 57.895 0.00 0.00 0.00 4.02
1947 2250 3.390521 AAGCCGTCCAGCGATGGA 61.391 61.111 20.59 20.59 46.84 3.41
2073 2376 1.489481 ATCTGCTGGAGATGAACGGA 58.511 50.000 11.10 0.00 40.19 4.69
2110 2413 4.227073 TGAGGTGTTTGTGGATGGATATCA 59.773 41.667 4.83 0.00 34.90 2.15
2111 2414 5.103982 TGAGGTGTTTGTGGATGGATATCAT 60.104 40.000 4.83 0.00 39.13 2.45
2112 2415 6.101005 TGAGGTGTTTGTGGATGGATATCATA 59.899 38.462 4.83 0.00 35.97 2.15
2113 2416 7.095183 AGGTGTTTGTGGATGGATATCATAT 57.905 36.000 4.83 0.00 35.97 1.78
2114 2417 7.170965 AGGTGTTTGTGGATGGATATCATATC 58.829 38.462 4.83 7.71 35.97 1.63
2181 2484 2.093783 GCAAATGCAGCTTCTGAATTGC 59.906 45.455 15.85 15.85 38.66 3.56
2182 2485 2.273370 AATGCAGCTTCTGAATTGCG 57.727 45.000 16.92 6.08 38.23 4.85
2190 2493 1.267806 CTTCTGAATTGCGGTGTTGCT 59.732 47.619 0.00 0.00 35.36 3.91
2191 2494 1.317613 TCTGAATTGCGGTGTTGCTT 58.682 45.000 0.00 0.00 35.36 3.91
2192 2495 1.001487 TCTGAATTGCGGTGTTGCTTG 60.001 47.619 0.00 0.00 35.36 4.01
2193 2496 0.597118 TGAATTGCGGTGTTGCTTGC 60.597 50.000 0.00 0.00 35.36 4.01
2194 2497 0.597118 GAATTGCGGTGTTGCTTGCA 60.597 50.000 0.00 0.00 35.36 4.08
2205 2508 4.505191 GGTGTTGCTTGCATTGCATATAAG 59.495 41.667 12.95 7.91 38.76 1.73
2219 2522 4.453478 TGCATATAAGCTGCTGCATTACTC 59.547 41.667 18.42 2.08 39.54 2.59
2231 2534 3.925379 TGCATTACTCGTTGACAGATGT 58.075 40.909 0.00 0.00 0.00 3.06
2232 2535 3.679502 TGCATTACTCGTTGACAGATGTG 59.320 43.478 0.00 0.00 0.00 3.21
2233 2536 3.679980 GCATTACTCGTTGACAGATGTGT 59.320 43.478 0.00 0.00 40.71 3.72
2234 2537 4.434725 GCATTACTCGTTGACAGATGTGTG 60.435 45.833 0.00 0.00 36.88 3.82
2235 2538 2.890808 ACTCGTTGACAGATGTGTGT 57.109 45.000 0.00 0.00 36.88 3.72
2236 2539 2.473816 ACTCGTTGACAGATGTGTGTG 58.526 47.619 0.00 0.00 36.88 3.82
2237 2540 2.100749 ACTCGTTGACAGATGTGTGTGA 59.899 45.455 0.00 0.00 36.88 3.58
2238 2541 2.728318 CTCGTTGACAGATGTGTGTGAG 59.272 50.000 0.00 0.00 36.88 3.51
2239 2542 1.193203 CGTTGACAGATGTGTGTGAGC 59.807 52.381 0.00 0.00 36.88 4.26
2240 2543 1.193203 GTTGACAGATGTGTGTGAGCG 59.807 52.381 0.00 0.00 36.88 5.03
2241 2544 0.945743 TGACAGATGTGTGTGAGCGC 60.946 55.000 0.00 0.00 36.88 5.92
2242 2545 0.668706 GACAGATGTGTGTGAGCGCT 60.669 55.000 11.27 11.27 36.88 5.92
2243 2546 0.947660 ACAGATGTGTGTGAGCGCTG 60.948 55.000 18.48 0.00 34.75 5.18
2244 2547 2.031516 AGATGTGTGTGAGCGCTGC 61.032 57.895 18.48 8.36 0.00 5.25
2245 2548 2.031516 GATGTGTGTGAGCGCTGCT 61.032 57.895 18.48 2.68 43.88 4.24
2246 2549 2.236803 GATGTGTGTGAGCGCTGCTG 62.237 60.000 18.48 0.00 39.88 4.41
2247 2550 2.969238 GTGTGTGAGCGCTGCTGT 60.969 61.111 18.48 0.00 39.88 4.40
2248 2551 2.662857 TGTGTGAGCGCTGCTGTC 60.663 61.111 18.48 0.00 39.88 3.51
2249 2552 2.356793 GTGTGAGCGCTGCTGTCT 60.357 61.111 18.48 0.00 39.88 3.41
2250 2553 1.958205 GTGTGAGCGCTGCTGTCTT 60.958 57.895 18.48 0.00 39.88 3.01
2251 2554 0.667487 GTGTGAGCGCTGCTGTCTTA 60.667 55.000 18.48 0.00 39.88 2.10
2252 2555 0.247460 TGTGAGCGCTGCTGTCTTAT 59.753 50.000 18.48 0.00 39.88 1.73
2253 2556 0.926846 GTGAGCGCTGCTGTCTTATC 59.073 55.000 18.48 0.00 39.88 1.75
2254 2557 0.820226 TGAGCGCTGCTGTCTTATCT 59.180 50.000 18.48 0.00 39.88 1.98
2255 2558 1.207390 GAGCGCTGCTGTCTTATCTG 58.793 55.000 18.48 0.00 39.88 2.90
2256 2559 0.534412 AGCGCTGCTGTCTTATCTGT 59.466 50.000 10.39 0.00 37.57 3.41
2257 2560 0.649475 GCGCTGCTGTCTTATCTGTG 59.351 55.000 0.00 0.00 0.00 3.66
2258 2561 1.284657 CGCTGCTGTCTTATCTGTGG 58.715 55.000 0.00 0.00 0.00 4.17
2259 2562 1.012841 GCTGCTGTCTTATCTGTGGC 58.987 55.000 0.00 0.00 0.00 5.01
2260 2563 1.284657 CTGCTGTCTTATCTGTGGCG 58.715 55.000 0.00 0.00 0.00 5.69
2261 2564 0.608130 TGCTGTCTTATCTGTGGCGT 59.392 50.000 0.00 0.00 0.00 5.68
2262 2565 1.001974 TGCTGTCTTATCTGTGGCGTT 59.998 47.619 0.00 0.00 0.00 4.84
2263 2566 2.076863 GCTGTCTTATCTGTGGCGTTT 58.923 47.619 0.00 0.00 0.00 3.60
2264 2567 2.159653 GCTGTCTTATCTGTGGCGTTTG 60.160 50.000 0.00 0.00 0.00 2.93
2265 2568 2.416547 CTGTCTTATCTGTGGCGTTTGG 59.583 50.000 0.00 0.00 0.00 3.28
2266 2569 1.737793 GTCTTATCTGTGGCGTTTGGG 59.262 52.381 0.00 0.00 0.00 4.12
2267 2570 1.349688 TCTTATCTGTGGCGTTTGGGT 59.650 47.619 0.00 0.00 0.00 4.51
2268 2571 1.468520 CTTATCTGTGGCGTTTGGGTG 59.531 52.381 0.00 0.00 0.00 4.61
2269 2572 0.958382 TATCTGTGGCGTTTGGGTGC 60.958 55.000 0.00 0.00 0.00 5.01
2270 2573 2.974692 ATCTGTGGCGTTTGGGTGCA 62.975 55.000 0.00 0.00 0.00 4.57
2271 2574 3.483235 CTGTGGCGTTTGGGTGCAC 62.483 63.158 8.80 8.80 0.00 4.57
2272 2575 3.216292 GTGGCGTTTGGGTGCACT 61.216 61.111 17.98 0.00 0.00 4.40
2273 2576 2.904866 TGGCGTTTGGGTGCACTC 60.905 61.111 17.98 14.58 0.00 3.51
2274 2577 2.594592 GGCGTTTGGGTGCACTCT 60.595 61.111 19.48 0.00 0.00 3.24
2275 2578 2.639286 GCGTTTGGGTGCACTCTG 59.361 61.111 19.48 6.38 0.00 3.35
2276 2579 2.186826 GCGTTTGGGTGCACTCTGT 61.187 57.895 19.48 0.00 0.00 3.41
2277 2580 1.724582 GCGTTTGGGTGCACTCTGTT 61.725 55.000 19.48 0.00 0.00 3.16
2278 2581 0.307760 CGTTTGGGTGCACTCTGTTC 59.692 55.000 19.48 5.09 0.00 3.18
2279 2582 1.680338 GTTTGGGTGCACTCTGTTCT 58.320 50.000 19.48 0.00 0.00 3.01
2280 2583 2.805295 CGTTTGGGTGCACTCTGTTCTA 60.805 50.000 19.48 0.00 0.00 2.10
2281 2584 2.543777 TTGGGTGCACTCTGTTCTAC 57.456 50.000 19.48 0.00 0.00 2.59
2282 2585 1.717032 TGGGTGCACTCTGTTCTACT 58.283 50.000 19.48 0.00 0.00 2.57
2283 2586 1.618837 TGGGTGCACTCTGTTCTACTC 59.381 52.381 19.48 0.00 0.00 2.59
2284 2587 1.402984 GGGTGCACTCTGTTCTACTCG 60.403 57.143 17.98 0.00 0.00 4.18
2285 2588 1.341606 GTGCACTCTGTTCTACTCGC 58.658 55.000 10.32 0.00 0.00 5.03
2286 2589 0.109735 TGCACTCTGTTCTACTCGCG 60.110 55.000 0.00 0.00 0.00 5.87
2287 2590 1.406970 GCACTCTGTTCTACTCGCGC 61.407 60.000 0.00 0.00 0.00 6.86
2288 2591 1.128724 CACTCTGTTCTACTCGCGCG 61.129 60.000 26.76 26.76 0.00 6.86
2289 2592 1.296755 ACTCTGTTCTACTCGCGCGA 61.297 55.000 32.60 32.60 0.00 5.87
2290 2593 0.028242 CTCTGTTCTACTCGCGCGAT 59.972 55.000 34.86 24.11 0.00 4.58
2291 2594 0.027716 TCTGTTCTACTCGCGCGATC 59.972 55.000 34.86 18.33 0.00 3.69
2292 2595 0.930742 CTGTTCTACTCGCGCGATCC 60.931 60.000 34.86 16.84 0.00 3.36
2293 2596 1.063649 GTTCTACTCGCGCGATCCA 59.936 57.895 34.86 19.50 0.00 3.41
2294 2597 1.063649 TTCTACTCGCGCGATCCAC 59.936 57.895 34.86 0.00 0.00 4.02
2295 2598 1.374343 TTCTACTCGCGCGATCCACT 61.374 55.000 34.86 15.28 0.00 4.00
2296 2599 1.369448 CTACTCGCGCGATCCACTC 60.369 63.158 34.86 0.00 0.00 3.51
2297 2600 2.718993 CTACTCGCGCGATCCACTCC 62.719 65.000 34.86 0.00 0.00 3.85
2298 2601 3.893763 CTCGCGCGATCCACTCCT 61.894 66.667 34.86 0.00 0.00 3.69
2299 2602 3.815569 CTCGCGCGATCCACTCCTC 62.816 68.421 34.86 0.00 0.00 3.71
2300 2603 4.933064 CGCGCGATCCACTCCTCC 62.933 72.222 28.94 0.00 0.00 4.30
2301 2604 3.838271 GCGCGATCCACTCCTCCA 61.838 66.667 12.10 0.00 0.00 3.86
2302 2605 2.892640 CGCGATCCACTCCTCCAA 59.107 61.111 0.00 0.00 0.00 3.53
2303 2606 1.218047 CGCGATCCACTCCTCCAAA 59.782 57.895 0.00 0.00 0.00 3.28
2304 2607 0.179073 CGCGATCCACTCCTCCAAAT 60.179 55.000 0.00 0.00 0.00 2.32
2305 2608 1.743772 CGCGATCCACTCCTCCAAATT 60.744 52.381 0.00 0.00 0.00 1.82
2306 2609 1.943340 GCGATCCACTCCTCCAAATTC 59.057 52.381 0.00 0.00 0.00 2.17
2307 2610 2.565841 CGATCCACTCCTCCAAATTCC 58.434 52.381 0.00 0.00 0.00 3.01
2308 2611 2.171448 CGATCCACTCCTCCAAATTCCT 59.829 50.000 0.00 0.00 0.00 3.36
2309 2612 3.388024 CGATCCACTCCTCCAAATTCCTA 59.612 47.826 0.00 0.00 0.00 2.94
2310 2613 4.040952 CGATCCACTCCTCCAAATTCCTAT 59.959 45.833 0.00 0.00 0.00 2.57
2311 2614 5.246203 CGATCCACTCCTCCAAATTCCTATA 59.754 44.000 0.00 0.00 0.00 1.31
2312 2615 6.573289 CGATCCACTCCTCCAAATTCCTATAG 60.573 46.154 0.00 0.00 0.00 1.31
2313 2616 5.538877 TCCACTCCTCCAAATTCCTATAGT 58.461 41.667 0.00 0.00 0.00 2.12
2314 2617 6.689561 TCCACTCCTCCAAATTCCTATAGTA 58.310 40.000 0.00 0.00 0.00 1.82
2315 2618 6.782988 TCCACTCCTCCAAATTCCTATAGTAG 59.217 42.308 0.00 0.00 0.00 2.57
2316 2619 6.459923 CACTCCTCCAAATTCCTATAGTAGC 58.540 44.000 0.00 0.00 0.00 3.58
2317 2620 6.042093 CACTCCTCCAAATTCCTATAGTAGCA 59.958 42.308 0.00 0.00 0.00 3.49
2318 2621 6.615726 ACTCCTCCAAATTCCTATAGTAGCAA 59.384 38.462 0.00 0.00 0.00 3.91
2319 2622 7.293535 ACTCCTCCAAATTCCTATAGTAGCAAT 59.706 37.037 0.00 0.00 0.00 3.56
2320 2623 7.453393 TCCTCCAAATTCCTATAGTAGCAATG 58.547 38.462 0.00 0.00 0.00 2.82
2321 2624 6.656693 CCTCCAAATTCCTATAGTAGCAATGG 59.343 42.308 0.00 0.87 0.00 3.16
2322 2625 7.387265 TCCAAATTCCTATAGTAGCAATGGA 57.613 36.000 0.00 3.14 0.00 3.41
2323 2626 7.811282 TCCAAATTCCTATAGTAGCAATGGAA 58.189 34.615 0.00 0.00 37.87 3.53
2324 2627 8.278639 TCCAAATTCCTATAGTAGCAATGGAAA 58.721 33.333 0.00 0.00 37.18 3.13
2325 2628 9.082313 CCAAATTCCTATAGTAGCAATGGAAAT 57.918 33.333 0.00 0.00 37.18 2.17
2345 2648 8.716646 GGAAATTTCCGGAAAATTGACATATT 57.283 30.769 30.10 16.03 44.88 1.28
2346 2649 8.603181 GGAAATTTCCGGAAAATTGACATATTG 58.397 33.333 30.10 0.00 44.88 1.90
2347 2650 9.150348 GAAATTTCCGGAAAATTGACATATTGT 57.850 29.630 30.10 9.66 44.88 2.71
2351 2654 9.632807 TTTCCGGAAAATTGACATATTGTAAAG 57.367 29.630 27.12 0.00 0.00 1.85
2352 2655 8.568676 TCCGGAAAATTGACATATTGTAAAGA 57.431 30.769 0.00 0.00 0.00 2.52
2353 2656 8.673711 TCCGGAAAATTGACATATTGTAAAGAG 58.326 33.333 0.00 0.00 0.00 2.85
2354 2657 8.673711 CCGGAAAATTGACATATTGTAAAGAGA 58.326 33.333 0.00 0.00 0.00 3.10
2355 2658 9.490663 CGGAAAATTGACATATTGTAAAGAGAC 57.509 33.333 0.00 0.00 0.00 3.36
2360 2663 8.846943 ATTGACATATTGTAAAGAGACACACA 57.153 30.769 0.00 0.00 0.00 3.72
2361 2664 7.652300 TGACATATTGTAAAGAGACACACAC 57.348 36.000 0.00 0.00 0.00 3.82
2362 2665 7.441836 TGACATATTGTAAAGAGACACACACT 58.558 34.615 0.00 0.00 0.00 3.55
2363 2666 7.598869 TGACATATTGTAAAGAGACACACACTC 59.401 37.037 0.00 0.00 34.95 3.51
2364 2667 7.671302 ACATATTGTAAAGAGACACACACTCT 58.329 34.615 0.00 0.00 45.13 3.24
2365 2668 8.803235 ACATATTGTAAAGAGACACACACTCTA 58.197 33.333 0.00 0.00 42.85 2.43
2366 2669 9.809096 CATATTGTAAAGAGACACACACTCTAT 57.191 33.333 0.00 0.00 42.85 1.98
2367 2670 9.809096 ATATTGTAAAGAGACACACACTCTATG 57.191 33.333 0.00 0.00 42.85 2.23
2368 2671 6.894339 TGTAAAGAGACACACACTCTATGA 57.106 37.500 0.00 0.00 42.85 2.15
2369 2672 7.284919 TGTAAAGAGACACACACTCTATGAA 57.715 36.000 0.00 0.00 42.85 2.57
2370 2673 7.371159 TGTAAAGAGACACACACTCTATGAAG 58.629 38.462 0.00 0.00 42.85 3.02
2371 2674 6.656632 AAAGAGACACACACTCTATGAAGA 57.343 37.500 0.00 0.00 42.85 2.87
2372 2675 6.656632 AAGAGACACACACTCTATGAAGAA 57.343 37.500 0.00 0.00 42.85 2.52
2373 2676 6.266168 AGAGACACACACTCTATGAAGAAG 57.734 41.667 0.00 0.00 42.03 2.85
2374 2677 4.815269 AGACACACACTCTATGAAGAAGC 58.185 43.478 0.00 0.00 0.00 3.86
2375 2678 4.526262 AGACACACACTCTATGAAGAAGCT 59.474 41.667 0.00 0.00 0.00 3.74
2376 2679 5.011533 AGACACACACTCTATGAAGAAGCTT 59.988 40.000 0.00 0.00 0.00 3.74
2377 2680 6.209589 AGACACACACTCTATGAAGAAGCTTA 59.790 38.462 0.00 0.00 0.00 3.09
2378 2681 6.393990 ACACACACTCTATGAAGAAGCTTAG 58.606 40.000 0.00 0.00 0.00 2.18
2379 2682 5.290643 CACACACTCTATGAAGAAGCTTAGC 59.709 44.000 0.00 0.00 0.00 3.09
2380 2683 5.186797 ACACACTCTATGAAGAAGCTTAGCT 59.813 40.000 0.00 0.00 42.56 3.32
2394 2697 5.422214 AGCTTAGCTTTGTATGTACCTGT 57.578 39.130 0.00 0.00 33.89 4.00
2395 2698 5.805728 AGCTTAGCTTTGTATGTACCTGTT 58.194 37.500 0.00 0.00 33.89 3.16
2396 2699 6.238648 AGCTTAGCTTTGTATGTACCTGTTT 58.761 36.000 0.00 0.00 33.89 2.83
2397 2700 7.391620 AGCTTAGCTTTGTATGTACCTGTTTA 58.608 34.615 0.00 0.00 33.89 2.01
2398 2701 7.549488 AGCTTAGCTTTGTATGTACCTGTTTAG 59.451 37.037 0.00 0.00 33.89 1.85
2399 2702 7.333672 GCTTAGCTTTGTATGTACCTGTTTAGT 59.666 37.037 0.00 0.00 0.00 2.24
2400 2703 9.865321 CTTAGCTTTGTATGTACCTGTTTAGTA 57.135 33.333 0.00 0.00 0.00 1.82
2401 2704 9.865321 TTAGCTTTGTATGTACCTGTTTAGTAG 57.135 33.333 0.00 0.00 0.00 2.57
2402 2705 8.130671 AGCTTTGTATGTACCTGTTTAGTAGA 57.869 34.615 0.00 0.00 0.00 2.59
2403 2706 8.759782 AGCTTTGTATGTACCTGTTTAGTAGAT 58.240 33.333 0.00 0.00 0.00 1.98
2404 2707 9.032420 GCTTTGTATGTACCTGTTTAGTAGATC 57.968 37.037 0.00 0.00 0.00 2.75
2405 2708 9.530633 CTTTGTATGTACCTGTTTAGTAGATCC 57.469 37.037 0.00 0.00 0.00 3.36
2406 2709 8.834004 TTGTATGTACCTGTTTAGTAGATCCT 57.166 34.615 0.00 0.00 0.00 3.24
2407 2710 8.234136 TGTATGTACCTGTTTAGTAGATCCTG 57.766 38.462 0.00 0.00 0.00 3.86
2408 2711 6.732896 ATGTACCTGTTTAGTAGATCCTGG 57.267 41.667 0.00 0.00 0.00 4.45
2409 2712 4.960469 TGTACCTGTTTAGTAGATCCTGGG 59.040 45.833 0.00 0.00 0.00 4.45
2410 2713 4.076175 ACCTGTTTAGTAGATCCTGGGT 57.924 45.455 0.00 0.00 0.00 4.51
2411 2714 3.775316 ACCTGTTTAGTAGATCCTGGGTG 59.225 47.826 0.00 0.00 0.00 4.61
2412 2715 4.030913 CCTGTTTAGTAGATCCTGGGTGA 58.969 47.826 0.00 0.00 0.00 4.02
2413 2716 4.469945 CCTGTTTAGTAGATCCTGGGTGAA 59.530 45.833 0.00 0.00 0.00 3.18
2414 2717 5.131142 CCTGTTTAGTAGATCCTGGGTGAAT 59.869 44.000 0.00 0.00 0.00 2.57
2415 2718 6.235231 TGTTTAGTAGATCCTGGGTGAATC 57.765 41.667 0.00 0.00 0.00 2.52
2416 2719 5.163447 TGTTTAGTAGATCCTGGGTGAATCG 60.163 44.000 0.00 0.00 0.00 3.34
2417 2720 3.314307 AGTAGATCCTGGGTGAATCGA 57.686 47.619 0.00 0.00 0.00 3.59
2418 2721 3.850752 AGTAGATCCTGGGTGAATCGAT 58.149 45.455 0.00 0.00 0.00 3.59
2419 2722 3.829601 AGTAGATCCTGGGTGAATCGATC 59.170 47.826 0.00 0.00 0.00 3.69
2420 2723 2.969628 AGATCCTGGGTGAATCGATCT 58.030 47.619 0.00 0.00 35.87 2.75
2421 2724 4.119556 AGATCCTGGGTGAATCGATCTA 57.880 45.455 0.00 0.00 38.28 1.98
2422 2725 4.085733 AGATCCTGGGTGAATCGATCTAG 58.914 47.826 0.00 0.00 38.28 2.43
2423 2726 3.314307 TCCTGGGTGAATCGATCTAGT 57.686 47.619 0.00 0.00 0.00 2.57
2439 2742 6.116680 GATCTAGTGATCAAAAGCCAACAG 57.883 41.667 0.00 0.00 46.20 3.16
2494 2798 2.906047 AGCAACGCTGAGTCAAGTC 58.094 52.632 0.00 0.00 37.57 3.01
2495 2799 0.601311 AGCAACGCTGAGTCAAGTCC 60.601 55.000 0.00 0.00 37.57 3.85
2496 2800 1.891060 GCAACGCTGAGTCAAGTCCG 61.891 60.000 0.00 0.00 0.00 4.79
2497 2801 1.006102 AACGCTGAGTCAAGTCCGG 60.006 57.895 0.00 0.00 0.00 5.14
2498 2802 2.811317 CGCTGAGTCAAGTCCGGC 60.811 66.667 0.00 0.00 0.00 6.13
2499 2803 2.343758 GCTGAGTCAAGTCCGGCA 59.656 61.111 0.00 0.00 0.00 5.69
2500 2804 1.301716 GCTGAGTCAAGTCCGGCAA 60.302 57.895 0.00 0.00 0.00 4.52
2501 2805 1.569479 GCTGAGTCAAGTCCGGCAAC 61.569 60.000 0.00 0.00 0.00 4.17
2513 2817 2.050442 GGCAACGGCGGTTCAAAG 60.050 61.111 13.24 0.00 42.47 2.77
2514 2818 2.050442 GCAACGGCGGTTCAAAGG 60.050 61.111 13.24 0.00 32.98 3.11
2515 2819 2.050442 CAACGGCGGTTCAAAGGC 60.050 61.111 13.24 0.00 32.98 4.35
2519 2823 2.254350 GGCGGTTCAAAGGCGAAC 59.746 61.111 0.00 0.00 43.75 3.95
2520 2824 2.548295 GGCGGTTCAAAGGCGAACA 61.548 57.895 6.19 0.00 45.82 3.18
2521 2825 1.357334 GCGGTTCAAAGGCGAACAA 59.643 52.632 6.19 0.00 45.82 2.83
2522 2826 0.660300 GCGGTTCAAAGGCGAACAAG 60.660 55.000 6.19 1.30 45.82 3.16
2523 2827 0.661020 CGGTTCAAAGGCGAACAAGT 59.339 50.000 6.19 0.00 45.82 3.16
2524 2828 1.333791 CGGTTCAAAGGCGAACAAGTC 60.334 52.381 6.19 0.00 45.82 3.01
2525 2829 1.001706 GGTTCAAAGGCGAACAAGTCC 60.002 52.381 6.19 0.00 45.82 3.85
2526 2830 1.673920 GTTCAAAGGCGAACAAGTCCA 59.326 47.619 0.00 0.00 43.89 4.02
2527 2831 2.270352 TCAAAGGCGAACAAGTCCAT 57.730 45.000 0.00 0.00 0.00 3.41
2528 2832 2.151202 TCAAAGGCGAACAAGTCCATC 58.849 47.619 0.00 0.00 0.00 3.51
2529 2833 1.135972 CAAAGGCGAACAAGTCCATCG 60.136 52.381 0.00 0.00 39.47 3.84
2530 2834 0.320374 AAGGCGAACAAGTCCATCGA 59.680 50.000 0.00 0.00 38.82 3.59
2531 2835 0.389948 AGGCGAACAAGTCCATCGAC 60.390 55.000 0.00 0.00 44.80 4.20
2532 2836 1.683790 GGCGAACAAGTCCATCGACG 61.684 60.000 0.00 0.00 44.28 5.12
2533 2837 1.683790 GCGAACAAGTCCATCGACGG 61.684 60.000 0.00 0.00 44.28 4.79
2534 2838 0.388134 CGAACAAGTCCATCGACGGT 60.388 55.000 0.00 0.00 44.28 4.83
2535 2839 1.068474 GAACAAGTCCATCGACGGTG 58.932 55.000 0.00 0.00 44.28 4.94
2536 2840 0.320421 AACAAGTCCATCGACGGTGG 60.320 55.000 21.53 21.53 44.28 4.61
2537 2841 1.292223 CAAGTCCATCGACGGTGGT 59.708 57.895 25.83 5.69 44.28 4.16
2538 2842 0.320421 CAAGTCCATCGACGGTGGTT 60.320 55.000 25.83 11.89 44.28 3.67
2539 2843 0.037605 AAGTCCATCGACGGTGGTTC 60.038 55.000 25.83 19.09 44.28 3.62
2540 2844 1.447314 GTCCATCGACGGTGGTTCC 60.447 63.158 25.83 11.98 37.96 3.62
2541 2845 1.909287 TCCATCGACGGTGGTTCCA 60.909 57.895 25.83 4.49 37.96 3.53
2542 2846 1.004320 CCATCGACGGTGGTTCCAA 60.004 57.895 19.36 0.00 35.57 3.53
2543 2847 1.019278 CCATCGACGGTGGTTCCAAG 61.019 60.000 19.36 0.00 35.57 3.61
2544 2848 1.019278 CATCGACGGTGGTTCCAAGG 61.019 60.000 0.00 0.00 35.57 3.61
2545 2849 2.798148 ATCGACGGTGGTTCCAAGGC 62.798 60.000 0.00 0.00 35.57 4.35
2546 2850 2.112297 GACGGTGGTTCCAAGGCA 59.888 61.111 0.00 0.00 35.57 4.75
2547 2851 1.527380 GACGGTGGTTCCAAGGCAA 60.527 57.895 0.00 0.00 35.57 4.52
2548 2852 1.076632 ACGGTGGTTCCAAGGCAAA 60.077 52.632 0.00 0.00 35.57 3.68
2557 2861 0.106918 TCCAAGGCAAACAAGTCCGT 60.107 50.000 0.00 0.00 0.00 4.69
2586 2890 0.181587 TTCCAAGGCGAACAAGTCCA 59.818 50.000 0.00 0.00 0.00 4.02
2603 2907 0.604243 CCATCGACGGTGGTTCCAAA 60.604 55.000 19.36 0.00 35.57 3.28
2690 2995 0.251209 AGTCAGCGACTAGTGGTGGA 60.251 55.000 18.17 9.49 41.51 4.02
2721 3026 3.573558 CCAACGTACTGGCGCATT 58.426 55.556 10.83 0.00 34.88 3.56
2750 3055 0.469917 CCATCCAGTACCCGATGCTT 59.530 55.000 12.31 0.00 35.55 3.91
2870 3175 2.045926 GACGAAGGTGCCATGGCT 60.046 61.111 35.53 17.44 42.51 4.75
2906 3211 1.069090 GCCGGATTCCGTGCTGATA 59.931 57.895 22.83 0.00 46.80 2.15
2922 3227 3.270027 CTGATAACATTGGCGGAGTTCA 58.730 45.455 0.00 0.00 0.00 3.18
3028 7572 0.777631 CGCCAATTTCACAAGTTGCG 59.222 50.000 1.81 0.00 0.00 4.85
3044 7588 0.036388 TGCGGATGGAGGAAACTGAC 60.036 55.000 0.00 0.00 44.43 3.51
3046 7590 1.339151 GCGGATGGAGGAAACTGACTT 60.339 52.381 0.00 0.00 44.43 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.326278 ACATGTAGCGTATCAAACAGTTCG 59.674 41.667 0.00 0.00 0.00 3.95
11 12 4.578601 GCTCAACATGTAGCGTATCAAAC 58.421 43.478 4.90 0.00 0.00 2.93
38 39 2.355481 GCGACGGACGTGACCTTT 60.355 61.111 0.53 0.00 44.60 3.11
73 74 5.453567 ACACCTGTATCTTTTGCCTTTTC 57.546 39.130 0.00 0.00 0.00 2.29
74 75 5.048991 CGTACACCTGTATCTTTTGCCTTTT 60.049 40.000 0.00 0.00 32.54 2.27
80 81 3.124636 GGCACGTACACCTGTATCTTTTG 59.875 47.826 0.00 0.00 32.54 2.44
101 102 0.526954 GTGGTACGTCCGTATGCAGG 60.527 60.000 2.56 0.00 39.52 4.85
124 125 0.313672 GACGTGGCCATTTTCTTGCA 59.686 50.000 9.72 0.00 0.00 4.08
130 131 1.244019 GCAGAGGACGTGGCCATTTT 61.244 55.000 9.72 0.00 0.00 1.82
163 174 5.632347 CCTTCGCTTTTACTACGAGAAAAGA 59.368 40.000 10.47 0.00 42.67 2.52
164 175 5.163982 CCCTTCGCTTTTACTACGAGAAAAG 60.164 44.000 0.00 0.52 42.84 2.27
165 176 4.687483 CCCTTCGCTTTTACTACGAGAAAA 59.313 41.667 0.00 0.00 37.11 2.29
234 252 4.295119 ACCGGGTCACTCACGCAC 62.295 66.667 6.32 0.00 42.24 5.34
235 253 3.986006 GACCGGGTCACTCACGCA 61.986 66.667 22.10 0.00 42.24 5.24
236 254 3.986006 TGACCGGGTCACTCACGC 61.986 66.667 25.53 0.00 42.24 5.34
277 295 7.254898 CCGTTTTACTCTACACGTGGATAGATA 60.255 40.741 19.22 9.57 0.00 1.98
279 297 5.163723 CCGTTTTACTCTACACGTGGATAGA 60.164 44.000 19.22 16.04 0.00 1.98
280 298 5.032863 CCGTTTTACTCTACACGTGGATAG 58.967 45.833 21.57 16.20 0.00 2.08
281 299 4.675146 GCCGTTTTACTCTACACGTGGATA 60.675 45.833 21.57 2.46 0.00 2.59
282 300 3.841643 CCGTTTTACTCTACACGTGGAT 58.158 45.455 21.57 1.59 0.00 3.41
283 301 2.607771 GCCGTTTTACTCTACACGTGGA 60.608 50.000 21.57 11.23 0.00 4.02
284 302 1.723003 GCCGTTTTACTCTACACGTGG 59.277 52.381 21.57 4.06 0.00 4.94
285 303 1.384409 CGCCGTTTTACTCTACACGTG 59.616 52.381 15.48 15.48 0.00 4.49
286 304 1.001378 ACGCCGTTTTACTCTACACGT 60.001 47.619 0.00 0.00 0.00 4.49
287 305 1.689959 ACGCCGTTTTACTCTACACG 58.310 50.000 0.00 0.00 0.00 4.49
288 306 5.768333 AATAACGCCGTTTTACTCTACAC 57.232 39.130 8.19 0.00 0.00 2.90
289 307 9.579768 TTAATAATAACGCCGTTTTACTCTACA 57.420 29.630 8.19 0.00 0.00 2.74
312 330 2.420967 GCACGGGCCTCCTCTAATTTAA 60.421 50.000 0.00 0.00 0.00 1.52
313 331 1.140252 GCACGGGCCTCCTCTAATTTA 59.860 52.381 0.00 0.00 0.00 1.40
314 332 0.107165 GCACGGGCCTCCTCTAATTT 60.107 55.000 0.00 0.00 0.00 1.82
315 333 1.527370 GCACGGGCCTCCTCTAATT 59.473 57.895 0.00 0.00 0.00 1.40
317 335 3.458163 CGCACGGGCCTCCTCTAA 61.458 66.667 2.82 0.00 36.38 2.10
369 390 3.774959 AATAGCGCCGCGGAGACTG 62.775 63.158 33.84 14.77 0.00 3.51
370 391 3.486252 GAATAGCGCCGCGGAGACT 62.486 63.158 33.84 27.75 0.00 3.24
371 392 3.030882 GAATAGCGCCGCGGAGAC 61.031 66.667 33.84 22.56 0.00 3.36
372 393 4.280494 GGAATAGCGCCGCGGAGA 62.280 66.667 33.84 13.51 0.00 3.71
380 401 2.124320 TGGCTTGGGGAATAGCGC 60.124 61.111 0.00 0.00 38.28 5.92
381 402 1.077787 TGTGGCTTGGGGAATAGCG 60.078 57.895 0.00 0.00 38.28 4.26
382 403 1.037579 GGTGTGGCTTGGGGAATAGC 61.038 60.000 0.00 0.00 36.66 2.97
467 494 1.696884 TGGTTTGGGGAATTTTCTGGC 59.303 47.619 0.00 0.00 0.00 4.85
472 499 3.267031 TGTGGTTTGGTTTGGGGAATTTT 59.733 39.130 0.00 0.00 0.00 1.82
485 512 1.000359 GGGAGGGGATGTGGTTTGG 60.000 63.158 0.00 0.00 0.00 3.28
498 530 3.093172 GGAGCAGGGAAGGGGAGG 61.093 72.222 0.00 0.00 0.00 4.30
527 570 2.897350 GGAGCTTGGATTCGGGCG 60.897 66.667 0.00 0.00 0.00 6.13
559 618 2.433838 CTGCTCCAGACAGCACCG 60.434 66.667 0.00 0.00 44.73 4.94
574 633 3.642008 GAGCGCGAACAAGCAGCTG 62.642 63.158 12.10 10.11 43.12 4.24
575 634 3.418068 GAGCGCGAACAAGCAGCT 61.418 61.111 12.10 0.00 44.68 4.24
576 635 4.783841 CGAGCGCGAACAAGCAGC 62.784 66.667 12.10 0.00 40.82 5.25
577 636 4.139420 CCGAGCGCGAACAAGCAG 62.139 66.667 12.10 0.00 40.82 4.24
580 639 3.041940 AACCCGAGCGCGAACAAG 61.042 61.111 12.10 0.00 40.82 3.16
581 640 3.342627 CAACCCGAGCGCGAACAA 61.343 61.111 12.10 0.00 40.82 2.83
600 659 2.501610 GATCCCAGCTCCGGTGAC 59.498 66.667 7.92 0.00 32.22 3.67
601 660 2.764128 GGATCCCAGCTCCGGTGA 60.764 66.667 7.92 0.00 32.22 4.02
625 684 2.359011 GGCCCCAAATCCGGAGTT 59.641 61.111 12.20 12.20 0.00 3.01
626 685 4.109675 CGGCCCCAAATCCGGAGT 62.110 66.667 11.34 3.58 41.82 3.85
656 727 1.211709 GGCGAAAACAATGGACCGG 59.788 57.895 0.00 0.00 0.00 5.28
691 762 1.153823 CTTACCACGAGGACGGCTG 60.154 63.158 5.68 0.00 44.46 4.85
743 839 2.165641 TGGAACAGTACTGCTATCGTGG 59.834 50.000 22.90 0.00 0.00 4.94
776 872 2.545526 CTGAATCACTCCACACACACAC 59.454 50.000 0.00 0.00 0.00 3.82
780 876 2.031682 GCAACTGAATCACTCCACACAC 60.032 50.000 0.00 0.00 0.00 3.82
790 910 4.910195 ACTCCTACAATGCAACTGAATCA 58.090 39.130 6.19 0.00 0.00 2.57
834 954 0.680921 ACATCCAATCCAACGCCAGG 60.681 55.000 0.00 0.00 0.00 4.45
864 984 2.187424 GGCCTGAGCTGAGCTGAG 59.813 66.667 13.71 14.00 39.88 3.35
885 1005 1.938814 CACACAAACTTGGTGCGCG 60.939 57.895 0.00 0.00 39.87 6.86
916 1061 5.915812 GCTATTGTAAGAGCTAAGAAGGC 57.084 43.478 4.12 0.00 39.99 4.35
933 1090 8.677148 TTTCTGAAACAAGAACAGTAGCTATT 57.323 30.769 0.00 0.00 35.92 1.73
946 1103 5.517770 CCAGCAACTTCTTTTCTGAAACAAG 59.482 40.000 14.94 14.94 30.09 3.16
963 1218 1.082756 CTGCGAACGAACCAGCAAC 60.083 57.895 0.00 0.00 39.26 4.17
979 1234 2.724977 TTTCAGACTGTAGACCGCTG 57.275 50.000 1.59 0.00 0.00 5.18
983 1238 5.163713 GGATGCATTTTTCAGACTGTAGACC 60.164 44.000 0.00 0.00 0.00 3.85
989 1244 4.491676 CTTGGGATGCATTTTTCAGACTG 58.508 43.478 0.00 0.00 0.00 3.51
1386 1644 2.856000 AAGCCCCTGAGCACCTGT 60.856 61.111 0.00 0.00 34.23 4.00
1817 2120 3.555324 TCCTGTTGGAGCACGCCA 61.555 61.111 0.00 0.00 37.46 5.69
2073 2376 2.501723 ACACCTCAACGGCATCTAGAAT 59.498 45.455 0.00 0.00 35.61 2.40
2110 2413 4.461781 AGAAGCACTGCAAAAGCAAGATAT 59.538 37.500 3.30 0.00 0.00 1.63
2111 2414 3.822735 AGAAGCACTGCAAAAGCAAGATA 59.177 39.130 3.30 0.00 0.00 1.98
2112 2415 2.626743 AGAAGCACTGCAAAAGCAAGAT 59.373 40.909 3.30 0.00 0.00 2.40
2113 2416 2.026641 AGAAGCACTGCAAAAGCAAGA 58.973 42.857 3.30 0.00 0.00 3.02
2114 2417 2.223641 TGAGAAGCACTGCAAAAGCAAG 60.224 45.455 3.30 0.00 0.00 4.01
2181 2484 0.668096 ATGCAATGCAAGCAACACCG 60.668 50.000 13.45 0.00 46.27 4.94
2182 2485 2.367030 TATGCAATGCAAGCAACACC 57.633 45.000 13.45 0.00 46.27 4.16
2190 2493 3.797524 GCAGCAGCTTATATGCAATGCAA 60.798 43.478 13.45 1.99 46.31 4.08
2191 2494 2.287970 GCAGCAGCTTATATGCAATGCA 60.288 45.455 11.44 11.44 46.31 3.96
2192 2495 2.287970 TGCAGCAGCTTATATGCAATGC 60.288 45.455 19.14 19.14 45.09 3.56
2193 2496 3.636282 TGCAGCAGCTTATATGCAATG 57.364 42.857 12.65 8.73 45.09 2.82
2205 2508 1.078709 TCAACGAGTAATGCAGCAGC 58.921 50.000 0.00 0.00 42.57 5.25
2219 2522 1.193203 GCTCACACACATCTGTCAACG 59.807 52.381 0.00 0.00 0.00 4.10
2231 2534 2.649245 AAGACAGCAGCGCTCACACA 62.649 55.000 7.13 0.00 36.40 3.72
2232 2535 0.667487 TAAGACAGCAGCGCTCACAC 60.667 55.000 7.13 0.00 36.40 3.82
2233 2536 0.247460 ATAAGACAGCAGCGCTCACA 59.753 50.000 7.13 0.00 36.40 3.58
2234 2537 0.926846 GATAAGACAGCAGCGCTCAC 59.073 55.000 7.13 1.95 36.40 3.51
2235 2538 0.820226 AGATAAGACAGCAGCGCTCA 59.180 50.000 7.13 0.00 36.40 4.26
2236 2539 1.207390 CAGATAAGACAGCAGCGCTC 58.793 55.000 7.13 2.24 36.40 5.03
2237 2540 0.534412 ACAGATAAGACAGCAGCGCT 59.466 50.000 2.64 2.64 40.77 5.92
2238 2541 0.649475 CACAGATAAGACAGCAGCGC 59.351 55.000 0.00 0.00 0.00 5.92
2239 2542 1.284657 CCACAGATAAGACAGCAGCG 58.715 55.000 0.00 0.00 0.00 5.18
2240 2543 1.012841 GCCACAGATAAGACAGCAGC 58.987 55.000 0.00 0.00 0.00 5.25
2241 2544 1.284657 CGCCACAGATAAGACAGCAG 58.715 55.000 0.00 0.00 0.00 4.24
2242 2545 0.608130 ACGCCACAGATAAGACAGCA 59.392 50.000 0.00 0.00 0.00 4.41
2243 2546 1.726853 AACGCCACAGATAAGACAGC 58.273 50.000 0.00 0.00 0.00 4.40
2244 2547 2.416547 CCAAACGCCACAGATAAGACAG 59.583 50.000 0.00 0.00 0.00 3.51
2245 2548 2.422597 CCAAACGCCACAGATAAGACA 58.577 47.619 0.00 0.00 0.00 3.41
2246 2549 1.737793 CCCAAACGCCACAGATAAGAC 59.262 52.381 0.00 0.00 0.00 3.01
2247 2550 1.349688 ACCCAAACGCCACAGATAAGA 59.650 47.619 0.00 0.00 0.00 2.10
2248 2551 1.468520 CACCCAAACGCCACAGATAAG 59.531 52.381 0.00 0.00 0.00 1.73
2249 2552 1.529226 CACCCAAACGCCACAGATAA 58.471 50.000 0.00 0.00 0.00 1.75
2250 2553 0.958382 GCACCCAAACGCCACAGATA 60.958 55.000 0.00 0.00 0.00 1.98
2251 2554 2.268076 GCACCCAAACGCCACAGAT 61.268 57.895 0.00 0.00 0.00 2.90
2252 2555 2.904866 GCACCCAAACGCCACAGA 60.905 61.111 0.00 0.00 0.00 3.41
2253 2556 3.215568 TGCACCCAAACGCCACAG 61.216 61.111 0.00 0.00 0.00 3.66
2254 2557 3.522731 GTGCACCCAAACGCCACA 61.523 61.111 5.22 0.00 0.00 4.17
2255 2558 3.194272 GAGTGCACCCAAACGCCAC 62.194 63.158 14.63 0.00 0.00 5.01
2256 2559 2.904866 GAGTGCACCCAAACGCCA 60.905 61.111 14.63 0.00 0.00 5.69
2257 2560 2.594592 AGAGTGCACCCAAACGCC 60.595 61.111 14.63 0.00 0.00 5.68
2258 2561 1.724582 AACAGAGTGCACCCAAACGC 61.725 55.000 14.63 0.00 0.00 4.84
2259 2562 0.307760 GAACAGAGTGCACCCAAACG 59.692 55.000 14.63 0.00 0.00 3.60
2260 2563 1.680338 AGAACAGAGTGCACCCAAAC 58.320 50.000 14.63 1.27 0.00 2.93
2261 2564 2.438021 AGTAGAACAGAGTGCACCCAAA 59.562 45.455 14.63 0.00 0.00 3.28
2262 2565 2.037251 GAGTAGAACAGAGTGCACCCAA 59.963 50.000 14.63 0.00 0.00 4.12
2263 2566 1.618837 GAGTAGAACAGAGTGCACCCA 59.381 52.381 14.63 0.00 0.00 4.51
2264 2567 1.402984 CGAGTAGAACAGAGTGCACCC 60.403 57.143 14.63 0.01 0.00 4.61
2265 2568 1.983972 CGAGTAGAACAGAGTGCACC 58.016 55.000 14.63 5.12 0.00 5.01
2266 2569 1.341606 GCGAGTAGAACAGAGTGCAC 58.658 55.000 9.40 9.40 0.00 4.57
2267 2570 0.109735 CGCGAGTAGAACAGAGTGCA 60.110 55.000 0.00 0.00 0.00 4.57
2268 2571 1.406970 GCGCGAGTAGAACAGAGTGC 61.407 60.000 12.10 0.00 0.00 4.40
2269 2572 1.128724 CGCGCGAGTAGAACAGAGTG 61.129 60.000 28.94 0.00 0.00 3.51
2270 2573 1.134901 CGCGCGAGTAGAACAGAGT 59.865 57.895 28.94 0.00 0.00 3.24
2271 2574 0.028242 ATCGCGCGAGTAGAACAGAG 59.972 55.000 36.99 0.54 0.00 3.35
2272 2575 0.027716 GATCGCGCGAGTAGAACAGA 59.972 55.000 36.99 11.10 0.00 3.41
2273 2576 0.930742 GGATCGCGCGAGTAGAACAG 60.931 60.000 36.99 1.38 0.00 3.16
2274 2577 1.063649 GGATCGCGCGAGTAGAACA 59.936 57.895 36.99 12.77 0.00 3.18
2275 2578 1.063649 TGGATCGCGCGAGTAGAAC 59.936 57.895 36.99 21.72 0.00 3.01
2276 2579 1.063649 GTGGATCGCGCGAGTAGAA 59.936 57.895 36.99 17.94 0.00 2.10
2277 2580 1.773054 GAGTGGATCGCGCGAGTAGA 61.773 60.000 36.99 18.22 0.00 2.59
2278 2581 1.369448 GAGTGGATCGCGCGAGTAG 60.369 63.158 36.99 5.65 0.00 2.57
2279 2582 2.713770 GAGTGGATCGCGCGAGTA 59.286 61.111 36.99 22.44 0.00 2.59
2280 2583 4.194720 GGAGTGGATCGCGCGAGT 62.195 66.667 36.99 24.45 0.00 4.18
2281 2584 3.815569 GAGGAGTGGATCGCGCGAG 62.816 68.421 36.99 7.02 0.00 5.03
2282 2585 3.889044 GAGGAGTGGATCGCGCGA 61.889 66.667 36.65 36.65 0.00 5.87
2283 2586 4.933064 GGAGGAGTGGATCGCGCG 62.933 72.222 26.76 26.76 0.00 6.86
2284 2587 2.852495 TTTGGAGGAGTGGATCGCGC 62.852 60.000 0.00 0.00 0.00 6.86
2285 2588 0.179073 ATTTGGAGGAGTGGATCGCG 60.179 55.000 0.00 0.00 0.00 5.87
2286 2589 1.943340 GAATTTGGAGGAGTGGATCGC 59.057 52.381 0.00 0.00 0.00 4.58
2287 2590 2.171448 AGGAATTTGGAGGAGTGGATCG 59.829 50.000 0.00 0.00 0.00 3.69
2288 2591 3.941704 AGGAATTTGGAGGAGTGGATC 57.058 47.619 0.00 0.00 0.00 3.36
2289 2592 6.153924 ACTATAGGAATTTGGAGGAGTGGAT 58.846 40.000 4.43 0.00 0.00 3.41
2290 2593 5.538877 ACTATAGGAATTTGGAGGAGTGGA 58.461 41.667 4.43 0.00 0.00 4.02
2291 2594 5.896073 ACTATAGGAATTTGGAGGAGTGG 57.104 43.478 4.43 0.00 0.00 4.00
2292 2595 6.042093 TGCTACTATAGGAATTTGGAGGAGTG 59.958 42.308 4.43 0.00 0.00 3.51
2293 2596 6.143915 TGCTACTATAGGAATTTGGAGGAGT 58.856 40.000 4.43 0.00 0.00 3.85
2294 2597 6.672266 TGCTACTATAGGAATTTGGAGGAG 57.328 41.667 4.43 0.00 0.00 3.69
2295 2598 7.453393 CATTGCTACTATAGGAATTTGGAGGA 58.547 38.462 4.43 0.00 43.12 3.71
2296 2599 6.656693 CCATTGCTACTATAGGAATTTGGAGG 59.343 42.308 4.43 0.00 43.12 4.30
2297 2600 7.453393 TCCATTGCTACTATAGGAATTTGGAG 58.547 38.462 4.43 0.00 43.12 3.86
2298 2601 7.387265 TCCATTGCTACTATAGGAATTTGGA 57.613 36.000 4.43 7.83 43.12 3.53
2299 2602 8.463930 TTTCCATTGCTACTATAGGAATTTGG 57.536 34.615 4.43 4.43 43.12 3.28
2303 2606 9.301897 GGAAATTTCCATTGCTACTATAGGAAT 57.698 33.333 28.76 0.00 45.99 3.01
2304 2607 8.691661 GGAAATTTCCATTGCTACTATAGGAA 57.308 34.615 28.76 0.00 46.76 3.36
2320 2623 8.603181 CAATATGTCAATTTTCCGGAAATTTCC 58.397 33.333 29.37 24.90 43.65 3.13
2321 2624 9.150348 ACAATATGTCAATTTTCCGGAAATTTC 57.850 29.630 29.37 19.39 43.65 2.17
2325 2628 9.632807 CTTTACAATATGTCAATTTTCCGGAAA 57.367 29.630 25.67 25.67 0.00 3.13
2326 2629 9.015367 TCTTTACAATATGTCAATTTTCCGGAA 57.985 29.630 14.35 14.35 0.00 4.30
2327 2630 8.568676 TCTTTACAATATGTCAATTTTCCGGA 57.431 30.769 0.00 0.00 0.00 5.14
2328 2631 8.673711 TCTCTTTACAATATGTCAATTTTCCGG 58.326 33.333 0.00 0.00 0.00 5.14
2329 2632 9.490663 GTCTCTTTACAATATGTCAATTTTCCG 57.509 33.333 0.00 0.00 0.00 4.30
2334 2637 9.283768 TGTGTGTCTCTTTACAATATGTCAATT 57.716 29.630 0.00 0.00 0.00 2.32
2335 2638 8.721478 GTGTGTGTCTCTTTACAATATGTCAAT 58.279 33.333 0.00 0.00 0.00 2.57
2336 2639 7.931407 AGTGTGTGTCTCTTTACAATATGTCAA 59.069 33.333 0.00 0.00 0.00 3.18
2337 2640 7.441836 AGTGTGTGTCTCTTTACAATATGTCA 58.558 34.615 0.00 0.00 0.00 3.58
2338 2641 7.815068 AGAGTGTGTGTCTCTTTACAATATGTC 59.185 37.037 0.00 0.00 38.91 3.06
2339 2642 7.671302 AGAGTGTGTGTCTCTTTACAATATGT 58.329 34.615 0.00 0.00 38.91 2.29
2340 2643 9.809096 ATAGAGTGTGTGTCTCTTTACAATATG 57.191 33.333 0.87 0.00 41.66 1.78
2341 2644 9.809096 CATAGAGTGTGTGTCTCTTTACAATAT 57.191 33.333 0.87 0.00 41.66 1.28
2342 2645 9.020731 TCATAGAGTGTGTGTCTCTTTACAATA 57.979 33.333 0.87 0.00 41.66 1.90
2343 2646 7.896811 TCATAGAGTGTGTGTCTCTTTACAAT 58.103 34.615 0.87 0.00 41.66 2.71
2344 2647 7.284919 TCATAGAGTGTGTGTCTCTTTACAA 57.715 36.000 0.87 0.00 41.66 2.41
2345 2648 6.894339 TCATAGAGTGTGTGTCTCTTTACA 57.106 37.500 0.87 0.00 41.66 2.41
2346 2649 7.594714 TCTTCATAGAGTGTGTGTCTCTTTAC 58.405 38.462 0.87 0.00 41.66 2.01
2347 2650 7.761038 TCTTCATAGAGTGTGTGTCTCTTTA 57.239 36.000 0.87 0.00 41.66 1.85
2348 2651 6.656632 TCTTCATAGAGTGTGTGTCTCTTT 57.343 37.500 0.87 0.00 41.66 2.52
2349 2652 6.656632 TTCTTCATAGAGTGTGTGTCTCTT 57.343 37.500 0.87 0.00 41.66 2.85
2350 2653 5.336372 GCTTCTTCATAGAGTGTGTGTCTCT 60.336 44.000 0.00 0.00 43.51 3.10
2351 2654 4.862018 GCTTCTTCATAGAGTGTGTGTCTC 59.138 45.833 0.00 0.00 0.00 3.36
2352 2655 4.526262 AGCTTCTTCATAGAGTGTGTGTCT 59.474 41.667 0.00 0.00 0.00 3.41
2353 2656 4.815269 AGCTTCTTCATAGAGTGTGTGTC 58.185 43.478 0.00 0.00 0.00 3.67
2354 2657 4.881019 AGCTTCTTCATAGAGTGTGTGT 57.119 40.909 0.00 0.00 0.00 3.72
2355 2658 5.290643 GCTAAGCTTCTTCATAGAGTGTGTG 59.709 44.000 0.00 0.00 0.00 3.82
2356 2659 5.186797 AGCTAAGCTTCTTCATAGAGTGTGT 59.813 40.000 0.00 0.00 33.89 3.72
2357 2660 5.659463 AGCTAAGCTTCTTCATAGAGTGTG 58.341 41.667 0.00 0.00 33.89 3.82
2358 2661 5.930837 AGCTAAGCTTCTTCATAGAGTGT 57.069 39.130 0.00 0.00 33.89 3.55
2372 2675 5.422214 ACAGGTACATACAAAGCTAAGCT 57.578 39.130 0.00 0.00 42.56 3.74
2373 2676 6.496338 AAACAGGTACATACAAAGCTAAGC 57.504 37.500 0.00 0.00 0.00 3.09
2374 2677 8.773404 ACTAAACAGGTACATACAAAGCTAAG 57.227 34.615 0.00 0.00 0.00 2.18
2375 2678 9.865321 CTACTAAACAGGTACATACAAAGCTAA 57.135 33.333 0.00 0.00 0.00 3.09
2376 2679 9.246670 TCTACTAAACAGGTACATACAAAGCTA 57.753 33.333 0.00 0.00 0.00 3.32
2377 2680 8.130671 TCTACTAAACAGGTACATACAAAGCT 57.869 34.615 0.00 0.00 0.00 3.74
2378 2681 8.943909 ATCTACTAAACAGGTACATACAAAGC 57.056 34.615 0.00 0.00 0.00 3.51
2379 2682 9.530633 GGATCTACTAAACAGGTACATACAAAG 57.469 37.037 0.00 0.00 0.00 2.77
2380 2683 9.263446 AGGATCTACTAAACAGGTACATACAAA 57.737 33.333 0.00 0.00 0.00 2.83
2381 2684 8.692710 CAGGATCTACTAAACAGGTACATACAA 58.307 37.037 0.00 0.00 0.00 2.41
2382 2685 7.287005 CCAGGATCTACTAAACAGGTACATACA 59.713 40.741 0.00 0.00 0.00 2.29
2383 2686 7.255871 CCCAGGATCTACTAAACAGGTACATAC 60.256 44.444 0.00 0.00 0.00 2.39
2384 2687 6.781014 CCCAGGATCTACTAAACAGGTACATA 59.219 42.308 0.00 0.00 0.00 2.29
2385 2688 5.602978 CCCAGGATCTACTAAACAGGTACAT 59.397 44.000 0.00 0.00 0.00 2.29
2386 2689 4.960469 CCCAGGATCTACTAAACAGGTACA 59.040 45.833 0.00 0.00 0.00 2.90
2387 2690 4.961099 ACCCAGGATCTACTAAACAGGTAC 59.039 45.833 0.00 0.00 0.00 3.34
2388 2691 4.960469 CACCCAGGATCTACTAAACAGGTA 59.040 45.833 0.00 0.00 0.00 3.08
2389 2692 3.775316 CACCCAGGATCTACTAAACAGGT 59.225 47.826 0.00 0.00 0.00 4.00
2390 2693 4.030913 TCACCCAGGATCTACTAAACAGG 58.969 47.826 0.00 0.00 0.00 4.00
2391 2694 5.677319 TTCACCCAGGATCTACTAAACAG 57.323 43.478 0.00 0.00 0.00 3.16
2392 2695 5.163447 CGATTCACCCAGGATCTACTAAACA 60.163 44.000 0.00 0.00 0.00 2.83
2393 2696 5.068723 TCGATTCACCCAGGATCTACTAAAC 59.931 44.000 0.00 0.00 0.00 2.01
2394 2697 5.205821 TCGATTCACCCAGGATCTACTAAA 58.794 41.667 0.00 0.00 0.00 1.85
2395 2698 4.800023 TCGATTCACCCAGGATCTACTAA 58.200 43.478 0.00 0.00 0.00 2.24
2396 2699 4.448720 TCGATTCACCCAGGATCTACTA 57.551 45.455 0.00 0.00 0.00 1.82
2397 2700 3.314307 TCGATTCACCCAGGATCTACT 57.686 47.619 0.00 0.00 0.00 2.57
2398 2701 3.829601 AGATCGATTCACCCAGGATCTAC 59.170 47.826 0.00 0.00 41.35 2.59
2399 2702 4.119556 AGATCGATTCACCCAGGATCTA 57.880 45.455 0.00 0.00 41.35 1.98
2400 2703 2.969628 AGATCGATTCACCCAGGATCT 58.030 47.619 0.00 0.00 39.09 2.75
2401 2704 3.829601 ACTAGATCGATTCACCCAGGATC 59.170 47.826 0.00 0.00 35.01 3.36
2402 2705 3.576118 CACTAGATCGATTCACCCAGGAT 59.424 47.826 0.00 0.00 0.00 3.24
2403 2706 2.959030 CACTAGATCGATTCACCCAGGA 59.041 50.000 0.00 0.00 0.00 3.86
2404 2707 2.959030 TCACTAGATCGATTCACCCAGG 59.041 50.000 0.00 0.00 0.00 4.45
2405 2708 4.804108 GATCACTAGATCGATTCACCCAG 58.196 47.826 0.00 0.00 41.12 4.45
2406 2709 4.855715 GATCACTAGATCGATTCACCCA 57.144 45.455 0.00 0.00 41.12 4.51
2417 2720 5.564550 ACTGTTGGCTTTTGATCACTAGAT 58.435 37.500 0.00 0.00 37.13 1.98
2418 2721 4.973168 ACTGTTGGCTTTTGATCACTAGA 58.027 39.130 0.00 0.00 0.00 2.43
2419 2722 5.455392 CAACTGTTGGCTTTTGATCACTAG 58.545 41.667 12.66 0.00 0.00 2.57
2420 2723 4.278170 CCAACTGTTGGCTTTTGATCACTA 59.722 41.667 25.21 0.00 45.17 2.74
2421 2724 3.068590 CCAACTGTTGGCTTTTGATCACT 59.931 43.478 25.21 0.00 45.17 3.41
2422 2725 3.383761 CCAACTGTTGGCTTTTGATCAC 58.616 45.455 25.21 0.00 45.17 3.06
2423 2726 3.731652 CCAACTGTTGGCTTTTGATCA 57.268 42.857 25.21 0.00 45.17 2.92
2439 2742 2.163010 TCGTCGAGGTTCTGATACCAAC 59.837 50.000 4.85 5.88 40.82 3.77
2448 2751 2.306341 TCGTAGATCGTCGAGGTTCT 57.694 50.000 19.33 19.33 40.80 3.01
2449 2752 2.543012 TCATCGTAGATCGTCGAGGTTC 59.457 50.000 19.82 6.55 45.12 3.62
2450 2753 2.287373 GTCATCGTAGATCGTCGAGGTT 59.713 50.000 19.82 0.00 45.12 3.50
2495 2799 3.872409 CTTTGAACCGCCGTTGCCG 62.872 63.158 0.00 0.00 30.30 5.69
2496 2800 2.050442 CTTTGAACCGCCGTTGCC 60.050 61.111 0.00 0.00 30.30 4.52
2497 2801 2.050442 CCTTTGAACCGCCGTTGC 60.050 61.111 0.00 0.00 30.30 4.17
2498 2802 2.050442 GCCTTTGAACCGCCGTTG 60.050 61.111 0.00 0.00 30.30 4.10
2499 2803 3.656045 CGCCTTTGAACCGCCGTT 61.656 61.111 0.00 0.00 33.88 4.44
2500 2804 4.612412 TCGCCTTTGAACCGCCGT 62.612 61.111 0.00 0.00 0.00 5.68
2501 2805 3.350612 TTCGCCTTTGAACCGCCG 61.351 61.111 0.00 0.00 0.00 6.46
2502 2806 2.065906 TTGTTCGCCTTTGAACCGCC 62.066 55.000 4.37 0.00 46.04 6.13
2503 2807 0.660300 CTTGTTCGCCTTTGAACCGC 60.660 55.000 4.37 0.00 46.04 5.68
2504 2808 0.661020 ACTTGTTCGCCTTTGAACCG 59.339 50.000 4.37 0.00 46.04 4.44
2505 2809 1.001706 GGACTTGTTCGCCTTTGAACC 60.002 52.381 4.37 0.00 46.04 3.62
2506 2810 1.673920 TGGACTTGTTCGCCTTTGAAC 59.326 47.619 0.00 0.00 46.63 3.18
2507 2811 2.045561 TGGACTTGTTCGCCTTTGAA 57.954 45.000 0.00 0.00 0.00 2.69
2508 2812 2.151202 GATGGACTTGTTCGCCTTTGA 58.849 47.619 0.00 0.00 0.00 2.69
2509 2813 1.135972 CGATGGACTTGTTCGCCTTTG 60.136 52.381 0.00 0.00 0.00 2.77
2510 2814 1.156736 CGATGGACTTGTTCGCCTTT 58.843 50.000 0.00 0.00 0.00 3.11
2511 2815 0.320374 TCGATGGACTTGTTCGCCTT 59.680 50.000 0.00 0.00 33.08 4.35
2512 2816 0.389948 GTCGATGGACTTGTTCGCCT 60.390 55.000 0.00 0.00 40.15 5.52
2513 2817 1.683790 CGTCGATGGACTTGTTCGCC 61.684 60.000 6.29 0.00 41.16 5.54
2514 2818 1.683790 CCGTCGATGGACTTGTTCGC 61.684 60.000 19.48 0.00 41.16 4.70
2515 2819 0.388134 ACCGTCGATGGACTTGTTCG 60.388 55.000 30.28 4.11 41.16 3.95
2516 2820 1.068474 CACCGTCGATGGACTTGTTC 58.932 55.000 30.28 0.00 41.16 3.18
2517 2821 0.320421 CCACCGTCGATGGACTTGTT 60.320 55.000 30.28 3.26 41.16 2.83
2518 2822 1.292223 CCACCGTCGATGGACTTGT 59.708 57.895 30.28 4.08 41.16 3.16
2519 2823 0.320421 AACCACCGTCGATGGACTTG 60.320 55.000 30.28 17.21 41.16 3.16
2520 2824 0.037605 GAACCACCGTCGATGGACTT 60.038 55.000 30.28 16.26 41.16 3.01
2521 2825 1.590147 GAACCACCGTCGATGGACT 59.410 57.895 30.28 5.74 41.16 3.85
2522 2826 1.447314 GGAACCACCGTCGATGGAC 60.447 63.158 30.28 14.04 39.87 4.02
2523 2827 1.473497 TTGGAACCACCGTCGATGGA 61.473 55.000 30.28 2.45 39.87 3.41
2524 2828 1.004320 TTGGAACCACCGTCGATGG 60.004 57.895 22.38 22.38 43.43 3.51
2525 2829 1.019278 CCTTGGAACCACCGTCGATG 61.019 60.000 0.00 0.00 42.61 3.84
2526 2830 1.295423 CCTTGGAACCACCGTCGAT 59.705 57.895 0.00 0.00 42.61 3.59
2527 2831 2.738480 CCTTGGAACCACCGTCGA 59.262 61.111 0.00 0.00 42.61 4.20
2528 2832 3.047877 GCCTTGGAACCACCGTCG 61.048 66.667 0.00 0.00 42.61 5.12
2529 2833 1.104577 TTTGCCTTGGAACCACCGTC 61.105 55.000 0.00 0.00 42.61 4.79
2530 2834 1.076632 TTTGCCTTGGAACCACCGT 60.077 52.632 0.00 0.00 42.61 4.83
2531 2835 1.362355 GTTTGCCTTGGAACCACCG 59.638 57.895 0.00 0.00 42.61 4.94
2532 2836 0.827368 TTGTTTGCCTTGGAACCACC 59.173 50.000 0.00 0.00 39.54 4.61
2533 2837 1.480545 ACTTGTTTGCCTTGGAACCAC 59.519 47.619 0.00 0.00 0.00 4.16
2534 2838 1.754226 GACTTGTTTGCCTTGGAACCA 59.246 47.619 0.00 0.00 0.00 3.67
2535 2839 1.068588 GGACTTGTTTGCCTTGGAACC 59.931 52.381 0.00 0.00 0.00 3.62
2536 2840 1.269051 CGGACTTGTTTGCCTTGGAAC 60.269 52.381 0.00 0.00 0.00 3.62
2537 2841 1.028905 CGGACTTGTTTGCCTTGGAA 58.971 50.000 0.00 0.00 0.00 3.53
2538 2842 0.106918 ACGGACTTGTTTGCCTTGGA 60.107 50.000 0.00 0.00 0.00 3.53
2539 2843 0.310854 GACGGACTTGTTTGCCTTGG 59.689 55.000 0.00 0.00 0.00 3.61
2540 2844 1.021202 TGACGGACTTGTTTGCCTTG 58.979 50.000 0.00 0.00 0.00 3.61
2541 2845 1.404035 GTTGACGGACTTGTTTGCCTT 59.596 47.619 0.00 0.00 0.00 4.35
2542 2846 1.021968 GTTGACGGACTTGTTTGCCT 58.978 50.000 0.00 0.00 0.00 4.75
2543 2847 0.316689 CGTTGACGGACTTGTTTGCC 60.317 55.000 0.00 0.00 35.37 4.52
2544 2848 3.142796 CGTTGACGGACTTGTTTGC 57.857 52.632 0.00 0.00 35.37 3.68
2557 2861 2.281208 CCTTGGAACCGCCGTTGA 60.281 61.111 0.00 0.00 40.66 3.18
2586 2890 0.953960 GCTTTGGAACCACCGTCGAT 60.954 55.000 0.00 0.00 42.61 3.59
2603 2907 1.213094 CGTTGACGGACTTGTTCGCT 61.213 55.000 0.86 0.00 35.37 4.93
2721 3026 1.064758 GTACTGGATGGGGATGTTGCA 60.065 52.381 0.00 0.00 0.00 4.08
2870 3175 1.603842 CACAGACTGGGCTATGGCA 59.396 57.895 7.51 0.00 40.87 4.92
2906 3211 1.880027 GTCTTGAACTCCGCCAATGTT 59.120 47.619 0.00 0.00 0.00 2.71
2922 3227 0.320247 CACGCCTCTCTTGCTGTCTT 60.320 55.000 0.00 0.00 0.00 3.01
2996 7540 2.482296 ATTGGCGCTTCAGCACTTGC 62.482 55.000 7.64 0.00 42.21 4.01
3028 7572 2.040412 ACCAAGTCAGTTTCCTCCATCC 59.960 50.000 0.00 0.00 0.00 3.51
3044 7588 3.674138 GCATGGCATAGTTGTTCACCAAG 60.674 47.826 0.00 0.00 32.51 3.61
3046 7590 1.818060 GCATGGCATAGTTGTTCACCA 59.182 47.619 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.