Multiple sequence alignment - TraesCS3A01G336600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G336600 chr3A 100.000 5268 0 0 1 5268 583696065 583701332 0.000000e+00 9729.0
1 TraesCS3A01G336600 chr3A 85.212 683 64 18 4585 5239 571844522 571843849 0.000000e+00 667.0
2 TraesCS3A01G336600 chr3A 100.000 32 0 0 5237 5268 479443368 479443399 5.700000e-05 60.2
3 TraesCS3A01G336600 chr3D 94.456 3445 121 29 1561 4944 442392024 442395459 0.000000e+00 5240.0
4 TraesCS3A01G336600 chr3D 90.851 776 45 12 350 1123 442390743 442391494 0.000000e+00 1016.0
5 TraesCS3A01G336600 chr3D 93.946 446 21 5 1119 1560 442391548 442391991 0.000000e+00 669.0
6 TraesCS3A01G336600 chr3D 90.777 206 9 3 58 262 442390552 442390748 3.130000e-67 267.0
7 TraesCS3A01G336600 chr3B 92.513 2057 111 18 2328 4347 580031423 580033473 0.000000e+00 2905.0
8 TraesCS3A01G336600 chr3B 92.683 1230 67 13 343 1568 580029467 580030677 0.000000e+00 1751.0
9 TraesCS3A01G336600 chr3B 94.143 700 36 3 1561 2258 580030702 580031398 0.000000e+00 1061.0
10 TraesCS3A01G336600 chr3B 93.204 206 13 1 58 262 580029263 580029468 8.570000e-78 302.0
11 TraesCS3A01G336600 chr7B 92.004 2001 110 17 2328 4300 32022414 32020436 0.000000e+00 2763.0
12 TraesCS3A01G336600 chr7B 89.748 1151 75 20 436 1568 32024295 32023170 0.000000e+00 1432.0
13 TraesCS3A01G336600 chr7B 93.875 702 39 3 1561 2258 32023145 32022444 0.000000e+00 1055.0
14 TraesCS3A01G336600 chr7B 92.308 533 30 6 1040 1568 32024969 32025494 0.000000e+00 747.0
15 TraesCS3A01G336600 chr7B 93.426 502 29 3 1561 2058 32025519 32026020 0.000000e+00 741.0
16 TraesCS3A01G336600 chr7B 88.421 285 9 7 2 262 32024806 32024522 6.580000e-84 322.0
17 TraesCS3A01G336600 chr7B 81.472 394 50 12 4585 4959 124239035 124239424 8.570000e-78 302.0
18 TraesCS3A01G336600 chr7B 92.793 111 7 1 4347 4456 32020355 32020245 5.460000e-35 159.0
19 TraesCS3A01G336600 chr2A 91.854 2001 112 18 2328 4300 337721109 337723086 0.000000e+00 2745.0
20 TraesCS3A01G336600 chr2A 91.854 2001 112 18 2328 4300 337860914 337862891 0.000000e+00 2745.0
21 TraesCS3A01G336600 chr2A 90.125 1681 88 31 435 2061 337856431 337854775 0.000000e+00 2113.0
22 TraesCS3A01G336600 chr2A 90.563 1155 66 18 432 1568 337859030 337860159 0.000000e+00 1489.0
23 TraesCS3A01G336600 chr2A 90.451 1152 67 17 435 1568 337716652 337715526 0.000000e+00 1478.0
24 TraesCS3A01G336600 chr2A 89.255 1154 71 19 432 1568 337719237 337720354 0.000000e+00 1395.0
25 TraesCS3A01G336600 chr2A 94.160 702 36 4 1561 2258 337860184 337860884 0.000000e+00 1064.0
26 TraesCS3A01G336600 chr2A 94.017 702 37 4 1561 2258 337720379 337721079 0.000000e+00 1059.0
27 TraesCS3A01G336600 chr2A 93.688 507 26 3 1561 2061 337715501 337714995 0.000000e+00 754.0
28 TraesCS3A01G336600 chr2A 88.772 285 8 7 2 262 337718730 337719014 1.410000e-85 327.0
29 TraesCS3A01G336600 chr2A 88.772 285 8 7 2 262 337858523 337858807 1.410000e-85 327.0
30 TraesCS3A01G336600 chr2A 88.070 285 10 11 2 262 337856941 337856657 3.060000e-82 316.0
31 TraesCS3A01G336600 chr2A 85.965 285 10 12 2 262 337717156 337716878 1.440000e-70 278.0
32 TraesCS3A01G336600 chr2A 92.793 111 7 1 4347 4456 337723167 337723277 5.460000e-35 159.0
33 TraesCS3A01G336600 chr2A 92.793 111 7 1 4347 4456 337862972 337863082 5.460000e-35 159.0
34 TraesCS3A01G336600 chr2A 95.699 93 3 1 259 350 709027670 709027578 1.180000e-31 148.0
35 TraesCS3A01G336600 chr7A 86.778 658 70 9 4597 5239 520791970 520791315 0.000000e+00 717.0
36 TraesCS3A01G336600 chr6D 85.588 680 67 21 4586 5239 452138540 452139214 0.000000e+00 684.0
37 TraesCS3A01G336600 chr6D 94.118 102 4 2 258 357 16703052 16703153 2.540000e-33 154.0
38 TraesCS3A01G336600 chr6D 89.381 113 9 3 261 371 412759757 412759646 7.110000e-29 139.0
39 TraesCS3A01G336600 chr1D 83.710 663 82 19 4594 5240 84538268 84537616 2.100000e-168 603.0
40 TraesCS3A01G336600 chr1D 87.187 359 36 7 4881 5238 448412408 448412059 2.960000e-107 399.0
41 TraesCS3A01G336600 chr6B 82.021 673 95 17 4585 5239 151193205 151193869 2.770000e-152 549.0
42 TraesCS3A01G336600 chr6B 93.069 101 4 3 248 347 277159036 277158938 1.530000e-30 145.0
43 TraesCS3A01G336600 chr6B 86.131 137 16 2 67 202 663532778 663532644 1.530000e-30 145.0
44 TraesCS3A01G336600 chr4A 81.081 666 96 15 4598 5238 620935464 620934804 6.090000e-139 505.0
45 TraesCS3A01G336600 chr5D 84.932 511 54 12 4746 5239 35083652 35083148 3.660000e-136 496.0
46 TraesCS3A01G336600 chr5D 78.402 676 108 24 4582 5235 439449647 439450306 6.350000e-109 405.0
47 TraesCS3A01G336600 chr5D 97.727 88 2 0 257 344 426250449 426250536 9.140000e-33 152.0
48 TraesCS3A01G336600 chr5D 100.000 30 0 0 5239 5268 284106076 284106047 7.370000e-04 56.5
49 TraesCS3A01G336600 chr5A 79.300 686 97 26 4585 5232 547066600 547067278 6.260000e-119 438.0
50 TraesCS3A01G336600 chr5A 84.987 393 33 16 4586 4953 43263757 43264148 4.980000e-100 375.0
51 TraesCS3A01G336600 chr5A 94.792 96 4 1 260 354 660790515 660790610 1.180000e-31 148.0
52 TraesCS3A01G336600 chr2B 82.441 467 52 13 4593 5029 92140183 92139717 1.070000e-101 381.0
53 TraesCS3A01G336600 chr2B 88.095 126 14 1 58 182 680205607 680205482 1.180000e-31 148.0
54 TraesCS3A01G336600 chr2D 91.379 116 9 1 67 182 567488852 567488738 1.960000e-34 158.0
55 TraesCS3A01G336600 chr2D 91.589 107 7 2 254 359 201441562 201441667 4.250000e-31 147.0
56 TraesCS3A01G336600 chr2D 94.737 95 4 1 261 354 296173760 296173666 4.250000e-31 147.0
57 TraesCS3A01G336600 chr2D 100.000 30 0 0 5239 5268 37959911 37959882 7.370000e-04 56.5
58 TraesCS3A01G336600 chr2D 100.000 30 0 0 5239 5268 37986562 37986533 7.370000e-04 56.5
59 TraesCS3A01G336600 chr1B 91.346 104 7 2 258 359 619215349 619215452 1.980000e-29 141.0
60 TraesCS3A01G336600 chr7D 88.136 59 5 1 5182 5240 626380858 626380802 9.470000e-08 69.4
61 TraesCS3A01G336600 chr6A 96.970 33 1 0 5235 5267 576393457 576393489 7.370000e-04 56.5
62 TraesCS3A01G336600 chr4B 100.000 30 0 0 5239 5268 592546551 592546522 7.370000e-04 56.5
63 TraesCS3A01G336600 chr4B 94.286 35 2 0 5234 5268 445649631 445649665 3.000000e-03 54.7
64 TraesCS3A01G336600 chr1A 100.000 30 0 0 5239 5268 571219696 571219725 7.370000e-04 56.5
65 TraesCS3A01G336600 chr1A 100.000 30 0 0 5239 5268 571259877 571259906 7.370000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G336600 chr3A 583696065 583701332 5267 False 9729.000000 9729 100.000000 1 5268 1 chr3A.!!$F2 5267
1 TraesCS3A01G336600 chr3A 571843849 571844522 673 True 667.000000 667 85.212000 4585 5239 1 chr3A.!!$R1 654
2 TraesCS3A01G336600 chr3D 442390552 442395459 4907 False 1798.000000 5240 92.507500 58 4944 4 chr3D.!!$F1 4886
3 TraesCS3A01G336600 chr3B 580029263 580033473 4210 False 1504.750000 2905 93.135750 58 4347 4 chr3B.!!$F1 4289
4 TraesCS3A01G336600 chr7B 32020245 32024806 4561 True 1146.200000 2763 91.368200 2 4456 5 chr7B.!!$R1 4454
5 TraesCS3A01G336600 chr7B 32024969 32026020 1051 False 744.000000 747 92.867000 1040 2058 2 chr7B.!!$F2 1018
6 TraesCS3A01G336600 chr2A 337854775 337856941 2166 True 1214.500000 2113 89.097500 2 2061 2 chr2A.!!$R3 2059
7 TraesCS3A01G336600 chr2A 337858523 337863082 4559 False 1156.800000 2745 91.628400 2 4456 5 chr2A.!!$F2 4454
8 TraesCS3A01G336600 chr2A 337718730 337723277 4547 False 1137.000000 2745 91.338200 2 4456 5 chr2A.!!$F1 4454
9 TraesCS3A01G336600 chr2A 337714995 337717156 2161 True 836.666667 1478 90.034667 2 2061 3 chr2A.!!$R2 2059
10 TraesCS3A01G336600 chr7A 520791315 520791970 655 True 717.000000 717 86.778000 4597 5239 1 chr7A.!!$R1 642
11 TraesCS3A01G336600 chr6D 452138540 452139214 674 False 684.000000 684 85.588000 4586 5239 1 chr6D.!!$F2 653
12 TraesCS3A01G336600 chr1D 84537616 84538268 652 True 603.000000 603 83.710000 4594 5240 1 chr1D.!!$R1 646
13 TraesCS3A01G336600 chr6B 151193205 151193869 664 False 549.000000 549 82.021000 4585 5239 1 chr6B.!!$F1 654
14 TraesCS3A01G336600 chr4A 620934804 620935464 660 True 505.000000 505 81.081000 4598 5238 1 chr4A.!!$R1 640
15 TraesCS3A01G336600 chr5D 35083148 35083652 504 True 496.000000 496 84.932000 4746 5239 1 chr5D.!!$R1 493
16 TraesCS3A01G336600 chr5D 439449647 439450306 659 False 405.000000 405 78.402000 4582 5235 1 chr5D.!!$F2 653
17 TraesCS3A01G336600 chr5A 547066600 547067278 678 False 438.000000 438 79.300000 4585 5232 1 chr5A.!!$F2 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 709 1.002544 GTTCACTGCAACCCTAGCTCT 59.997 52.381 0.00 0.00 0.00 4.09 F
1029 1180 0.035458 AAGCAGCAGTACACCAGGTC 59.965 55.000 0.00 0.00 0.00 3.85 F
1646 1891 1.352017 TGGTGATATATGCCCAGCTGG 59.648 52.381 26.87 26.87 37.09 4.85 F
2855 3135 0.821301 TGCAACCCACGATGCTGAAA 60.821 50.000 0.00 0.00 42.97 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1490 1703 0.445436 GAGATGGCTGACGCTTGTTG 59.555 55.000 0.00 0.0 36.09 3.33 R
2815 3095 2.912956 ACAAGAGGGCCTACTCATTTGA 59.087 45.455 5.73 0.0 39.97 2.69 R
3053 3339 3.087031 ACCATGAGTTCTGGCTGATTTG 58.913 45.455 0.00 0.0 37.27 2.32 R
4702 5085 0.558220 TCCATTGTTTCCCCCACACA 59.442 50.000 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 189 2.412870 TGGAGACGTGCAACATAACAG 58.587 47.619 0.00 0.00 35.74 3.16
252 284 3.166679 GAAGGTAAGACTGAGGTGGACT 58.833 50.000 0.00 0.00 0.00 3.85
269 390 2.033372 GACTAGGTTGCTACTCCCTCC 58.967 57.143 0.00 0.00 0.00 4.30
295 416 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
308 429 7.483307 AGAACGTTTTTGACACTAGTGTAGTA 58.517 34.615 27.98 14.71 45.05 1.82
344 466 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
345 467 3.339713 TTATGGGACGGAGGGAGTAAT 57.660 47.619 0.00 0.00 0.00 1.89
347 469 1.200519 TGGGACGGAGGGAGTAATTG 58.799 55.000 0.00 0.00 0.00 2.32
349 471 1.558294 GGGACGGAGGGAGTAATTGTT 59.442 52.381 0.00 0.00 0.00 2.83
351 473 3.007635 GGACGGAGGGAGTAATTGTTTG 58.992 50.000 0.00 0.00 0.00 2.93
353 475 2.039879 ACGGAGGGAGTAATTGTTTGCT 59.960 45.455 0.00 0.00 0.00 3.91
354 476 3.262405 ACGGAGGGAGTAATTGTTTGCTA 59.738 43.478 0.00 0.00 0.00 3.49
356 478 4.881850 CGGAGGGAGTAATTGTTTGCTAAT 59.118 41.667 0.00 0.00 0.00 1.73
357 479 5.357032 CGGAGGGAGTAATTGTTTGCTAATT 59.643 40.000 0.00 0.00 0.00 1.40
358 480 6.564328 GGAGGGAGTAATTGTTTGCTAATTG 58.436 40.000 0.00 0.00 0.00 2.32
359 481 5.965922 AGGGAGTAATTGTTTGCTAATTGC 58.034 37.500 0.00 0.00 43.25 3.56
360 482 5.716703 AGGGAGTAATTGTTTGCTAATTGCT 59.283 36.000 0.00 0.00 41.20 3.91
361 483 6.889722 AGGGAGTAATTGTTTGCTAATTGCTA 59.110 34.615 0.00 0.00 39.48 3.49
363 485 8.197439 GGGAGTAATTGTTTGCTAATTGCTATT 58.803 33.333 0.00 0.00 39.48 1.73
364 486 9.237846 GGAGTAATTGTTTGCTAATTGCTATTC 57.762 33.333 0.00 0.00 39.48 1.75
367 489 9.787532 GTAATTGTTTGCTAATTGCTATTCAGA 57.212 29.630 0.00 0.00 43.37 3.27
368 490 8.922058 AATTGTTTGCTAATTGCTATTCAGAG 57.078 30.769 0.00 0.00 43.37 3.35
369 491 7.686438 TTGTTTGCTAATTGCTATTCAGAGA 57.314 32.000 0.00 0.00 43.37 3.10
371 493 7.530010 TGTTTGCTAATTGCTATTCAGAGAAC 58.470 34.615 0.00 0.00 43.37 3.01
372 494 7.174772 TGTTTGCTAATTGCTATTCAGAGAACA 59.825 33.333 0.00 2.09 43.37 3.18
375 497 7.700505 TGCTAATTGCTATTCAGAGAACAATG 58.299 34.615 0.00 0.00 43.37 2.82
376 498 7.553760 TGCTAATTGCTATTCAGAGAACAATGA 59.446 33.333 0.00 0.00 43.37 2.57
377 499 8.566260 GCTAATTGCTATTCAGAGAACAATGAT 58.434 33.333 0.00 0.00 38.95 2.45
379 501 8.515695 AATTGCTATTCAGAGAACAATGATGA 57.484 30.769 0.00 0.00 0.00 2.92
381 503 7.725818 TGCTATTCAGAGAACAATGATGATC 57.274 36.000 0.00 0.00 0.00 2.92
383 505 6.149142 GCTATTCAGAGAACAATGATGATCCC 59.851 42.308 0.00 0.00 0.00 3.85
384 506 5.705397 TTCAGAGAACAATGATGATCCCT 57.295 39.130 0.00 0.00 0.00 4.20
385 507 5.032327 TCAGAGAACAATGATGATCCCTG 57.968 43.478 0.00 0.00 36.11 4.45
386 508 3.564644 CAGAGAACAATGATGATCCCTGC 59.435 47.826 0.00 0.00 29.84 4.85
387 509 3.458857 AGAGAACAATGATGATCCCTGCT 59.541 43.478 0.00 0.00 0.00 4.24
388 510 4.657504 AGAGAACAATGATGATCCCTGCTA 59.342 41.667 0.00 0.00 0.00 3.49
389 511 4.970711 AGAACAATGATGATCCCTGCTAG 58.029 43.478 0.00 0.00 0.00 3.42
390 512 3.137446 ACAATGATGATCCCTGCTAGC 57.863 47.619 8.10 8.10 0.00 3.42
393 515 4.020396 ACAATGATGATCCCTGCTAGCTAG 60.020 45.833 16.84 16.84 0.00 3.42
409 531 6.104439 CTAGCTAGCACAAACAATCAAGAG 57.896 41.667 18.83 0.00 0.00 2.85
410 532 3.190118 AGCTAGCACAAACAATCAAGAGC 59.810 43.478 18.83 0.00 0.00 4.09
411 533 3.058016 GCTAGCACAAACAATCAAGAGCA 60.058 43.478 10.63 0.00 0.00 4.26
412 534 4.557296 GCTAGCACAAACAATCAAGAGCAA 60.557 41.667 10.63 0.00 0.00 3.91
413 535 3.973657 AGCACAAACAATCAAGAGCAAG 58.026 40.909 0.00 0.00 0.00 4.01
414 536 3.382546 AGCACAAACAATCAAGAGCAAGT 59.617 39.130 0.00 0.00 0.00 3.16
415 537 4.114794 GCACAAACAATCAAGAGCAAGTT 58.885 39.130 0.00 0.00 0.00 2.66
416 538 4.026310 GCACAAACAATCAAGAGCAAGTTG 60.026 41.667 0.00 0.00 0.00 3.16
417 539 4.026310 CACAAACAATCAAGAGCAAGTTGC 60.026 41.667 20.44 20.44 45.46 4.17
433 555 7.083875 GCAAGTTGCTAATTGTTATCCAGTA 57.916 36.000 20.71 0.00 40.96 2.74
449 571 8.464404 GTTATCCAGTACAGTACAGTACATGAA 58.536 37.037 25.01 9.42 45.25 2.57
451 573 5.184479 TCCAGTACAGTACAGTACATGAACC 59.816 44.000 25.01 2.43 45.25 3.62
465 587 3.616821 ACATGAACCGATGAACACATACG 59.383 43.478 0.00 0.00 0.00 3.06
514 637 6.428083 TTTTGTAAGGTGGATCACTCTGTA 57.572 37.500 0.00 0.00 34.40 2.74
549 672 3.098555 CCGTTGGTCATAAGCGCC 58.901 61.111 2.29 0.00 0.00 6.53
570 693 2.134933 GTTTTTGGCCCGGGGTTCA 61.135 57.895 25.28 10.92 0.00 3.18
586 709 1.002544 GTTCACTGCAACCCTAGCTCT 59.997 52.381 0.00 0.00 0.00 4.09
899 1050 8.424133 TGGATATATATGATCAAAGATCCACCG 58.576 37.037 20.15 0.00 37.32 4.94
975 1126 7.995488 TCCTTTTTCTTTCAGTCAGATCTTTCT 59.005 33.333 0.00 0.00 0.00 2.52
978 1129 5.065704 TCTTTCAGTCAGATCTTTCTCCG 57.934 43.478 0.00 0.00 0.00 4.63
1029 1180 0.035458 AAGCAGCAGTACACCAGGTC 59.965 55.000 0.00 0.00 0.00 3.85
1118 1269 9.831737 CAAGTAATTAGTGACCTGAATCTTTTG 57.168 33.333 0.00 0.00 0.00 2.44
1218 1428 5.811613 CCATTGCGAATTAACATGGTTTGAT 59.188 36.000 0.00 0.00 0.00 2.57
1236 1446 2.028112 TGATGACACAGTTGGTAGGAGC 60.028 50.000 0.00 0.00 0.00 4.70
1306 1516 4.925054 TCGGGTAACTCAGTTAAAATGTCG 59.075 41.667 0.00 0.00 29.42 4.35
1310 1520 5.407387 GGTAACTCAGTTAAAATGTCGCAGA 59.593 40.000 0.00 0.00 29.42 4.26
1350 1560 3.058293 CACCAAATGTCGCAGTACATGTT 60.058 43.478 2.30 0.00 39.98 2.71
1530 1743 5.585445 TCTCAAGGAGTCGTGTCTAGTATTC 59.415 44.000 0.00 0.00 0.00 1.75
1555 1768 4.566360 CCTTTGAATTGTGCGTGAACTTTT 59.434 37.500 0.00 0.00 0.00 2.27
1556 1769 5.746245 CCTTTGAATTGTGCGTGAACTTTTA 59.254 36.000 0.00 0.00 0.00 1.52
1557 1770 6.291585 CCTTTGAATTGTGCGTGAACTTTTAC 60.292 38.462 0.00 0.00 0.00 2.01
1646 1891 1.352017 TGGTGATATATGCCCAGCTGG 59.648 52.381 26.87 26.87 37.09 4.85
1658 1904 2.919228 CCCAGCTGGTTTGTAGGATAC 58.081 52.381 30.63 0.00 43.42 2.24
1682 1928 4.833390 ACTAGTATGTGTTTCCTTGCTCC 58.167 43.478 0.00 0.00 0.00 4.70
1697 1943 2.375146 TGCTCCGCATAGACACTTCTA 58.625 47.619 0.00 0.00 38.76 2.10
1786 2036 7.851387 TGTTGTTATTGTCAACAGAGTTACA 57.149 32.000 7.28 0.00 46.35 2.41
1836 2086 8.865001 CGGAAAAATGTTTCTTGTAAAGTTTCA 58.135 29.630 8.27 0.00 46.34 2.69
1873 2123 7.415653 GGTTGGTTCATTCTTCTCCATGAATAC 60.416 40.741 0.00 0.00 40.62 1.89
1895 2145 1.756538 CCAGTGTTGGTTCCTTTGCTT 59.243 47.619 0.00 0.00 39.79 3.91
1907 2157 7.375053 TGGTTCCTTTGCTTTGTATTGTATTC 58.625 34.615 0.00 0.00 0.00 1.75
1916 2166 7.112122 TGCTTTGTATTGTATTCTCTGACCAT 58.888 34.615 0.00 0.00 0.00 3.55
1957 2208 8.272173 CCTTTCCTAGAATCCCTATTTGTACAA 58.728 37.037 3.59 3.59 0.00 2.41
2115 2366 5.250982 TCATCATTTGCTCTCACAGATGTT 58.749 37.500 0.00 0.00 34.60 2.71
2176 2427 8.226543 TGAACAAAGTGATAAATTGATTTCGC 57.773 30.769 0.00 0.00 0.00 4.70
2199 2455 7.483375 TCGCATTTCGACAATTTTATTTGGTAG 59.517 33.333 0.00 0.00 43.16 3.18
2397 2668 4.862641 ACTGCACAGTCCCCTATTATTT 57.137 40.909 0.00 0.00 36.92 1.40
2398 2669 4.781934 ACTGCACAGTCCCCTATTATTTC 58.218 43.478 0.00 0.00 36.92 2.17
2565 2837 3.560025 CCACCTTCAGCACCAAAGTATCT 60.560 47.826 0.00 0.00 0.00 1.98
2710 2990 6.500751 TCTTCCTGGTGGTCTTTTTATCTAGT 59.499 38.462 0.00 0.00 34.23 2.57
2855 3135 0.821301 TGCAACCCACGATGCTGAAA 60.821 50.000 0.00 0.00 42.97 2.69
3053 3339 2.492088 GGGGAAATACCTGTTCTGTTGC 59.508 50.000 0.00 0.00 38.98 4.17
3370 3683 6.426328 GCATAACTTATTCCATGGTCTCAGAG 59.574 42.308 12.58 6.37 0.00 3.35
3395 3708 4.574828 AGGTGTTGTTACTTAGTTGCAGTG 59.425 41.667 0.00 0.00 0.00 3.66
3459 3772 5.063312 ACTGGTCTTTGTTTGAATTTTTGCG 59.937 36.000 0.00 0.00 0.00 4.85
3466 3779 7.545965 TCTTTGTTTGAATTTTTGCGTTTCCTA 59.454 29.630 0.00 0.00 0.00 2.94
3489 3802 5.607168 ATTCCTTCTCCCTTTTCCTCTTT 57.393 39.130 0.00 0.00 0.00 2.52
3511 3824 8.879759 TCTTTTCTTTAAGACACACAGTACTTG 58.120 33.333 0.00 0.00 0.00 3.16
3785 4101 6.782082 TCTTAGAAGCTTCAGATTGCTCTA 57.218 37.500 27.57 5.59 38.75 2.43
3816 4132 1.251251 AACCTGCCAGCAGATTGTTC 58.749 50.000 21.01 0.00 46.30 3.18
3837 4153 5.296151 TCTGAGGTGTGAATTCTCTTTGT 57.704 39.130 7.05 0.00 0.00 2.83
3843 4159 6.831976 AGGTGTGAATTCTCTTTGTAGTCTT 58.168 36.000 7.05 0.00 0.00 3.01
3845 4161 7.442666 AGGTGTGAATTCTCTTTGTAGTCTTTC 59.557 37.037 7.05 0.00 0.00 2.62
4026 4343 3.243877 CGAGCGTTATGATTCTGGTTCAG 59.756 47.826 0.00 0.00 0.00 3.02
4306 4623 4.582869 TGCTTGATGATAAACTGAGCAGT 58.417 39.130 0.00 0.00 44.94 4.40
4323 4640 2.160417 GCAGTGTGAACATTAGTGCCTC 59.840 50.000 9.21 0.00 0.00 4.70
4341 4658 5.357878 GTGCCTCATAGACAATGATTTTCCA 59.642 40.000 0.00 0.00 43.70 3.53
4522 4890 7.841282 AATAGTCCCAATTATCTCTCGAAGA 57.159 36.000 0.00 0.00 38.72 2.87
4538 4906 2.741228 CGAAGATTCTCCCCTGCTCTTG 60.741 54.545 0.00 0.00 0.00 3.02
4553 4921 0.696501 TCTTGGTTGTAGGGAAGCCC 59.303 55.000 0.00 0.00 45.90 5.19
4571 4939 4.087892 CCTCCTGGCTGGGTGTCG 62.088 72.222 10.79 0.00 36.20 4.35
4572 4940 4.767255 CTCCTGGCTGGGTGTCGC 62.767 72.222 10.79 0.00 36.20 5.19
4587 4968 1.064357 TGTCGCGCGTCATATCTTACA 59.936 47.619 30.98 19.82 0.00 2.41
4592 4973 3.242016 CGCGCGTCATATCTTACAAGAAA 59.758 43.478 24.19 0.00 38.77 2.52
4624 5005 2.252127 TTTGCTGCGCCGCTTATGTC 62.252 55.000 24.31 0.00 0.00 3.06
4702 5085 2.914695 TACGTGCTAGTTGGTTTGGT 57.085 45.000 0.00 0.00 0.00 3.67
4724 5108 2.066592 TGTGGGGGAAACAATGGAGTA 58.933 47.619 0.00 0.00 0.00 2.59
4869 5274 2.359900 GTGGGAGAGTGTTTGCTATGG 58.640 52.381 0.00 0.00 0.00 2.74
4964 5425 9.850628 GGAGGGTGTCTTTTAATTAATACAAAC 57.149 33.333 0.00 2.34 0.00 2.93
4996 5457 0.393267 TACCTATGTTGTTGGCCGCC 60.393 55.000 1.04 1.04 0.00 6.13
5002 5463 2.904866 TTGTTGGCCGCCTGTGTC 60.905 61.111 11.61 0.00 0.00 3.67
5064 5525 1.355381 TCAATGAAGGCCCACATCACT 59.645 47.619 11.79 0.00 0.00 3.41
5083 5544 4.288626 TCACTTAAGCACTTACCAAGGGAT 59.711 41.667 1.29 0.00 32.08 3.85
5093 5554 4.728860 ACTTACCAAGGGATCCATTCATCT 59.271 41.667 15.23 0.00 0.00 2.90
5113 5574 4.556697 TCTAGAGATCCCACCATAAAGCA 58.443 43.478 0.00 0.00 0.00 3.91
5186 5651 4.221482 AGTTGAATGAGGGGCTTGAAAATC 59.779 41.667 0.00 0.00 0.00 2.17
5187 5652 3.099141 TGAATGAGGGGCTTGAAAATCC 58.901 45.455 0.00 0.00 0.00 3.01
5235 5700 6.523035 TCATTAGGCCATAACCAAGGATTA 57.477 37.500 5.01 0.00 0.00 1.75
5240 5705 3.383505 GGCCATAACCAAGGATTAACCAC 59.616 47.826 0.00 0.00 42.04 4.16
5241 5706 3.383505 GCCATAACCAAGGATTAACCACC 59.616 47.826 0.00 0.00 42.04 4.61
5242 5707 4.605183 CCATAACCAAGGATTAACCACCA 58.395 43.478 0.00 0.00 42.04 4.17
5243 5708 4.644685 CCATAACCAAGGATTAACCACCAG 59.355 45.833 0.00 0.00 42.04 4.00
5244 5709 2.899303 ACCAAGGATTAACCACCAGG 57.101 50.000 0.00 0.00 42.04 4.45
5245 5710 1.272480 ACCAAGGATTAACCACCAGGC 60.272 52.381 0.00 0.00 42.04 4.85
5246 5711 1.272425 CCAAGGATTAACCACCAGGCA 60.272 52.381 0.00 0.00 42.04 4.75
5247 5712 2.094675 CAAGGATTAACCACCAGGCAG 58.905 52.381 0.00 0.00 42.04 4.85
5248 5713 0.034089 AGGATTAACCACCAGGCAGC 60.034 55.000 0.00 0.00 42.04 5.25
5249 5714 0.323360 GGATTAACCACCAGGCAGCA 60.323 55.000 0.00 0.00 39.06 4.41
5250 5715 1.544724 GATTAACCACCAGGCAGCAA 58.455 50.000 0.00 0.00 39.06 3.91
5251 5716 1.474077 GATTAACCACCAGGCAGCAAG 59.526 52.381 0.00 0.00 39.06 4.01
5252 5717 1.178534 TTAACCACCAGGCAGCAAGC 61.179 55.000 0.00 0.00 44.65 4.01
5261 5726 2.880648 GCAGCAAGCCTGGTAAGC 59.119 61.111 0.00 0.00 42.03 3.09
5262 5727 1.676967 GCAGCAAGCCTGGTAAGCT 60.677 57.895 0.00 0.00 44.19 3.74
5263 5728 0.392998 GCAGCAAGCCTGGTAAGCTA 60.393 55.000 8.22 0.00 40.49 3.32
5264 5729 1.748591 GCAGCAAGCCTGGTAAGCTAT 60.749 52.381 8.22 0.00 40.49 2.97
5265 5730 2.216898 CAGCAAGCCTGGTAAGCTATC 58.783 52.381 8.22 0.00 40.49 2.08
5266 5731 2.122768 AGCAAGCCTGGTAAGCTATCT 58.877 47.619 7.04 0.00 40.49 1.98
5267 5732 2.103941 AGCAAGCCTGGTAAGCTATCTC 59.896 50.000 7.04 0.00 40.49 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
241 273 1.270907 AGCAACCTAGTCCACCTCAG 58.729 55.000 0.00 0.00 0.00 3.35
252 284 0.333993 ACGGAGGGAGTAGCAACCTA 59.666 55.000 0.00 0.00 34.02 3.08
269 390 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
295 416 7.655490 AGAACGTTTTGATACTACACTAGTGT 58.345 34.615 30.13 30.13 46.87 3.55
308 429 8.770828 CGTCCCATAATATAAGAACGTTTTGAT 58.229 33.333 0.46 0.00 0.00 2.57
330 452 3.007635 CAAACAATTACTCCCTCCGTCC 58.992 50.000 0.00 0.00 0.00 4.79
351 473 7.923888 TCATTGTTCTCTGAATAGCAATTAGC 58.076 34.615 0.00 0.00 46.19 3.09
353 475 9.617523 TCATCATTGTTCTCTGAATAGCAATTA 57.382 29.630 0.00 0.00 0.00 1.40
354 476 8.515695 TCATCATTGTTCTCTGAATAGCAATT 57.484 30.769 0.00 0.00 0.00 2.32
356 478 7.228108 GGATCATCATTGTTCTCTGAATAGCAA 59.772 37.037 0.00 0.00 0.00 3.91
357 479 6.709397 GGATCATCATTGTTCTCTGAATAGCA 59.291 38.462 0.00 0.00 0.00 3.49
358 480 6.149142 GGGATCATCATTGTTCTCTGAATAGC 59.851 42.308 0.00 0.00 0.00 2.97
359 481 7.388224 CAGGGATCATCATTGTTCTCTGAATAG 59.612 40.741 7.78 0.00 46.52 1.73
360 482 7.222161 CAGGGATCATCATTGTTCTCTGAATA 58.778 38.462 7.78 0.00 46.52 1.75
361 483 6.062749 CAGGGATCATCATTGTTCTCTGAAT 58.937 40.000 7.78 0.00 46.52 2.57
363 485 4.685302 GCAGGGATCATCATTGTTCTCTGA 60.685 45.833 14.95 0.00 46.52 3.27
364 486 3.564644 GCAGGGATCATCATTGTTCTCTG 59.435 47.826 8.80 8.80 46.40 3.35
367 489 3.947612 AGCAGGGATCATCATTGTTCT 57.052 42.857 0.00 0.00 0.00 3.01
368 490 3.501445 GCTAGCAGGGATCATCATTGTTC 59.499 47.826 10.63 0.00 0.00 3.18
369 491 3.137913 AGCTAGCAGGGATCATCATTGTT 59.862 43.478 18.83 0.00 0.00 2.83
371 493 3.420300 AGCTAGCAGGGATCATCATTG 57.580 47.619 18.83 0.00 0.00 2.82
372 494 4.822685 CTAGCTAGCAGGGATCATCATT 57.177 45.455 18.83 0.00 0.00 2.57
386 508 5.447010 GCTCTTGATTGTTTGTGCTAGCTAG 60.447 44.000 16.84 16.84 0.00 3.42
387 509 4.393062 GCTCTTGATTGTTTGTGCTAGCTA 59.607 41.667 17.23 1.87 0.00 3.32
388 510 3.190118 GCTCTTGATTGTTTGTGCTAGCT 59.810 43.478 17.23 0.00 0.00 3.32
389 511 3.058016 TGCTCTTGATTGTTTGTGCTAGC 60.058 43.478 8.10 8.10 0.00 3.42
390 512 4.754372 TGCTCTTGATTGTTTGTGCTAG 57.246 40.909 0.00 0.00 0.00 3.42
393 515 3.709987 ACTTGCTCTTGATTGTTTGTGC 58.290 40.909 0.00 0.00 0.00 4.57
394 516 4.026310 GCAACTTGCTCTTGATTGTTTGTG 60.026 41.667 6.50 0.00 40.96 3.33
395 517 4.114794 GCAACTTGCTCTTGATTGTTTGT 58.885 39.130 6.50 0.00 40.96 2.83
396 518 4.703899 GCAACTTGCTCTTGATTGTTTG 57.296 40.909 6.50 0.00 40.96 2.93
409 531 5.954335 ACTGGATAACAATTAGCAACTTGC 58.046 37.500 5.55 5.55 45.46 4.01
410 532 8.039603 TGTACTGGATAACAATTAGCAACTTG 57.960 34.615 0.00 0.00 0.00 3.16
411 533 7.883311 ACTGTACTGGATAACAATTAGCAACTT 59.117 33.333 4.66 0.00 0.00 2.66
412 534 7.394816 ACTGTACTGGATAACAATTAGCAACT 58.605 34.615 4.66 0.00 0.00 3.16
413 535 7.611213 ACTGTACTGGATAACAATTAGCAAC 57.389 36.000 4.66 0.00 0.00 4.17
414 536 8.315482 TGTACTGTACTGGATAACAATTAGCAA 58.685 33.333 17.98 0.00 0.00 3.91
415 537 7.842982 TGTACTGTACTGGATAACAATTAGCA 58.157 34.615 17.98 0.00 0.00 3.49
416 538 7.980099 ACTGTACTGTACTGGATAACAATTAGC 59.020 37.037 23.12 0.00 32.62 3.09
419 541 8.809066 TGTACTGTACTGTACTGGATAACAATT 58.191 33.333 30.96 6.84 42.22 2.32
420 542 8.357290 TGTACTGTACTGTACTGGATAACAAT 57.643 34.615 30.96 7.39 42.22 2.71
421 543 7.764141 TGTACTGTACTGTACTGGATAACAA 57.236 36.000 30.96 13.99 42.22 2.83
422 544 7.612633 TCATGTACTGTACTGTACTGGATAACA 59.387 37.037 30.96 18.62 42.22 2.41
423 545 7.993101 TCATGTACTGTACTGTACTGGATAAC 58.007 38.462 30.96 14.68 42.22 1.89
424 546 8.464404 GTTCATGTACTGTACTGTACTGGATAA 58.536 37.037 30.96 19.75 42.22 1.75
425 547 7.067859 GGTTCATGTACTGTACTGTACTGGATA 59.932 40.741 30.96 18.21 42.22 2.59
426 548 6.127423 GGTTCATGTACTGTACTGTACTGGAT 60.127 42.308 30.96 19.79 42.22 3.41
427 549 5.184479 GGTTCATGTACTGTACTGTACTGGA 59.816 44.000 30.96 25.92 42.22 3.86
428 550 5.408356 GGTTCATGTACTGTACTGTACTGG 58.592 45.833 30.96 24.68 42.22 4.00
429 551 5.093457 CGGTTCATGTACTGTACTGTACTG 58.907 45.833 30.96 26.14 42.22 2.74
430 552 5.005740 TCGGTTCATGTACTGTACTGTACT 58.994 41.667 30.96 19.65 42.22 2.73
433 555 4.461431 TCATCGGTTCATGTACTGTACTGT 59.539 41.667 17.98 10.46 34.20 3.55
449 571 1.933181 CATGCGTATGTGTTCATCGGT 59.067 47.619 5.20 0.00 35.70 4.69
451 573 3.549873 TGTACATGCGTATGTGTTCATCG 59.450 43.478 26.72 0.00 46.63 3.84
495 618 6.222038 TGAATACAGAGTGATCCACCTTAC 57.778 41.667 0.00 0.00 34.49 2.34
509 632 6.223852 GGCGGATCTAGAATTTGAATACAGA 58.776 40.000 0.00 0.00 0.00 3.41
514 637 4.073293 ACGGCGGATCTAGAATTTGAAT 57.927 40.909 13.24 0.00 0.00 2.57
549 672 0.541063 AACCCCGGGCCAAAAACTAG 60.541 55.000 17.73 0.00 0.00 2.57
570 693 1.209019 CATCAGAGCTAGGGTTGCAGT 59.791 52.381 0.00 0.00 0.00 4.40
586 709 2.029918 CACAGACGAGTCAGGTTCATCA 60.030 50.000 5.99 0.00 0.00 3.07
659 782 3.973206 ACTCGTTGACATGGATACCAA 57.027 42.857 0.00 0.00 36.95 3.67
660 783 4.739436 GCATACTCGTTGACATGGATACCA 60.739 45.833 0.00 0.00 38.19 3.25
661 784 3.741344 GCATACTCGTTGACATGGATACC 59.259 47.826 0.00 0.00 0.00 2.73
899 1050 8.734386 AGGAATTTGATGATCTGTAACAAAGTC 58.266 33.333 0.00 0.00 41.47 3.01
975 1126 1.080093 CAGCTAAACCTGACGCGGA 60.080 57.895 12.47 0.00 34.77 5.54
978 1129 0.037232 AGTCCAGCTAAACCTGACGC 60.037 55.000 0.00 0.00 34.77 5.19
1123 1332 7.943079 AATGGTGAATCAATCAAGTGTATGA 57.057 32.000 0.00 0.00 40.50 2.15
1218 1428 1.344438 CTGCTCCTACCAACTGTGTCA 59.656 52.381 0.00 0.00 0.00 3.58
1236 1446 5.506686 TTCTGTCGATATCTGGTTCTCTG 57.493 43.478 0.34 0.00 0.00 3.35
1306 1516 7.012327 TGGTGAAAAGCTATATACATGTTCTGC 59.988 37.037 2.30 2.30 0.00 4.26
1486 1699 1.302192 GGCTGACGCTTGTTGGGTA 60.302 57.895 0.00 0.00 42.14 3.69
1490 1703 0.445436 GAGATGGCTGACGCTTGTTG 59.555 55.000 0.00 0.00 36.09 3.33
1530 1743 0.958091 TCACGCACAATTCAAAGGGG 59.042 50.000 0.00 0.00 0.00 4.79
1555 1768 7.287061 TCCTTCCAAATTCAAGTCAAGAAGTA 58.713 34.615 0.00 0.00 0.00 2.24
1556 1769 6.129179 TCCTTCCAAATTCAAGTCAAGAAGT 58.871 36.000 0.00 0.00 0.00 3.01
1557 1770 6.639632 TCCTTCCAAATTCAAGTCAAGAAG 57.360 37.500 0.00 0.00 0.00 2.85
1658 1904 5.122396 GGAGCAAGGAAACACATACTAGTTG 59.878 44.000 0.00 2.03 0.00 3.16
1771 2021 6.873605 CCTCATATTGTGTAACTCTGTTGACA 59.126 38.462 0.00 0.00 38.04 3.58
1780 2030 7.124298 TCAACTAGCTCCTCATATTGTGTAACT 59.876 37.037 0.00 0.00 38.04 2.24
1786 2036 5.303971 GCATCAACTAGCTCCTCATATTGT 58.696 41.667 0.00 0.00 0.00 2.71
1836 2086 6.735556 AGAATGAACCAACCTAATTCCTGAT 58.264 36.000 0.00 0.00 0.00 2.90
1957 2208 6.399013 TGGGGGAATCACTAGACCTATTAAT 58.601 40.000 0.00 0.00 0.00 1.40
2070 2321 9.216117 GATGAAGGTTTCTACTTTAGCAGTTTA 57.784 33.333 0.00 0.00 36.88 2.01
2289 2560 5.528870 CAATTGACACCTCAAAACCTTACC 58.471 41.667 0.00 0.00 39.90 2.85
2809 3089 3.118112 AGGGCCTACTCATTTGATCACAG 60.118 47.826 2.82 0.00 0.00 3.66
2815 3095 2.912956 ACAAGAGGGCCTACTCATTTGA 59.087 45.455 5.73 0.00 39.97 2.69
2855 3135 5.357878 CCACAGTAACCAAGATGCACAATAT 59.642 40.000 0.00 0.00 0.00 1.28
2966 3252 8.760980 AGCTCAAACTCTATATCTAACACTCT 57.239 34.615 0.00 0.00 0.00 3.24
3053 3339 3.087031 ACCATGAGTTCTGGCTGATTTG 58.913 45.455 0.00 0.00 37.27 2.32
3370 3683 5.296035 ACTGCAACTAAGTAACAACACCTTC 59.704 40.000 0.00 0.00 0.00 3.46
3395 3708 5.886960 AATTAGACCATCACAGCTGTTTC 57.113 39.130 18.94 8.71 0.00 2.78
3459 3772 6.153000 GGAAAAGGGAGAAGGAATTAGGAAAC 59.847 42.308 0.00 0.00 0.00 2.78
3466 3779 5.607168 AAGAGGAAAAGGGAGAAGGAATT 57.393 39.130 0.00 0.00 0.00 2.17
3489 3802 6.346096 AGCAAGTACTGTGTGTCTTAAAGAA 58.654 36.000 0.00 0.00 0.00 2.52
3511 3824 7.371126 AGTGAAAGAAAATGCTTCTACTAGC 57.629 36.000 0.00 0.00 41.59 3.42
3816 4132 6.226787 ACTACAAAGAGAATTCACACCTCAG 58.773 40.000 8.44 0.12 0.00 3.35
3837 4153 1.223487 GCATGGGGCGGAAAGACTA 59.777 57.895 0.00 0.00 0.00 2.59
4306 4623 5.046663 TGTCTATGAGGCACTAATGTTCACA 60.047 40.000 0.00 0.00 41.55 3.58
4323 4640 6.860080 ACTTGCTGGAAAATCATTGTCTATG 58.140 36.000 0.00 0.00 35.45 2.23
4341 4658 6.239915 GCTAAGGGTAAATAGGGATACTTGCT 60.240 42.308 0.00 0.00 0.00 3.91
4499 4867 8.429237 AATCTTCGAGAGATAATTGGGACTAT 57.571 34.615 9.53 0.00 44.41 2.12
4500 4868 7.726291 AGAATCTTCGAGAGATAATTGGGACTA 59.274 37.037 9.53 0.00 44.41 2.59
4510 4878 4.402829 CAGGGGAGAATCTTCGAGAGATA 58.597 47.826 9.53 0.00 44.41 1.98
4522 4890 1.005215 CAACCAAGAGCAGGGGAGAAT 59.995 52.381 0.00 0.00 0.00 2.40
4571 4939 4.318121 CCTTTCTTGTAAGATATGACGCGC 60.318 45.833 5.73 0.00 34.49 6.86
4572 4940 4.318121 GCCTTTCTTGTAAGATATGACGCG 60.318 45.833 3.53 3.53 34.49 6.01
4587 4968 4.030452 GCGCGCACTGCCTTTCTT 62.030 61.111 29.10 0.00 42.08 2.52
4624 5005 6.399639 AACAAAACATGTACAACCCTAAGG 57.600 37.500 0.00 0.00 42.99 2.69
4702 5085 0.558220 TCCATTGTTTCCCCCACACA 59.442 50.000 0.00 0.00 0.00 3.72
4996 5457 3.661678 CGTTTAGCATCAACACGACACAG 60.662 47.826 0.00 0.00 32.51 3.66
5002 5463 2.219903 TGACACGTTTAGCATCAACACG 59.780 45.455 0.00 0.00 36.91 4.49
5064 5525 3.589735 TGGATCCCTTGGTAAGTGCTTAA 59.410 43.478 9.90 0.00 0.00 1.85
5083 5544 4.163427 GGTGGGATCTCTAGATGAATGGA 58.837 47.826 0.00 0.00 34.37 3.41
5093 5554 4.037222 TGTGCTTTATGGTGGGATCTCTA 58.963 43.478 0.00 0.00 0.00 2.43
5113 5574 0.179032 TGATTGTGTCGTTGGCCTGT 60.179 50.000 3.32 0.00 0.00 4.00
5186 5651 4.099573 TCTCTAACTTCATTAAGCTCCCGG 59.900 45.833 0.00 0.00 36.05 5.73
5187 5652 5.263968 TCTCTAACTTCATTAAGCTCCCG 57.736 43.478 0.00 0.00 36.05 5.14
5235 5700 2.914097 GCTTGCTGCCTGGTGGTT 60.914 61.111 0.00 0.00 35.15 3.67
5244 5709 0.392998 TAGCTTACCAGGCTTGCTGC 60.393 55.000 10.05 0.00 40.74 5.25
5245 5710 2.158842 AGATAGCTTACCAGGCTTGCTG 60.159 50.000 10.05 0.00 40.74 4.41
5246 5711 2.103941 GAGATAGCTTACCAGGCTTGCT 59.896 50.000 0.00 6.04 40.74 3.91
5247 5712 2.488952 GAGATAGCTTACCAGGCTTGC 58.511 52.381 0.00 0.00 40.74 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.