Multiple sequence alignment - TraesCS3A01G336500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G336500 chr3A 100.000 7486 0 0 1 7486 583239098 583246583 0.000000e+00 13825.0
1 TraesCS3A01G336500 chr3D 92.801 4848 219 70 2122 6898 442171404 442176192 0.000000e+00 6900.0
2 TraesCS3A01G336500 chr3D 85.329 1336 103 51 1 1278 442168371 442169671 0.000000e+00 1295.0
3 TraesCS3A01G336500 chr3D 90.018 571 36 15 1530 2097 442170074 442170626 0.000000e+00 719.0
4 TraesCS3A01G336500 chr3D 84.342 562 53 21 2113 2642 442170611 442171169 1.110000e-142 518.0
5 TraesCS3A01G336500 chr3D 89.714 350 29 5 7141 7486 442176369 442176715 2.480000e-119 440.0
6 TraesCS3A01G336500 chr3D 91.241 274 16 5 1281 1552 442169796 442170063 4.270000e-97 366.0
7 TraesCS3A01G336500 chr3D 83.516 91 7 6 1099 1185 442169561 442169647 2.240000e-10 78.7
8 TraesCS3A01G336500 chr3B 92.879 2247 102 28 4658 6876 579451611 579453827 0.000000e+00 3210.0
9 TraesCS3A01G336500 chr3B 89.080 2619 152 59 2124 4661 579448965 579451530 0.000000e+00 3129.0
10 TraesCS3A01G336500 chr3B 83.911 1672 149 57 1287 2895 579447349 579448963 0.000000e+00 1487.0
11 TraesCS3A01G336500 chr3B 86.688 616 49 15 6 615 579446136 579446724 0.000000e+00 652.0
12 TraesCS3A01G336500 chr3B 85.864 382 23 9 7133 7486 579453901 579454279 1.970000e-100 377.0
13 TraesCS3A01G336500 chr3B 80.645 527 54 24 655 1165 579446802 579447296 1.540000e-96 364.0
14 TraesCS3A01G336500 chr3B 92.308 91 7 0 6968 7058 801314299 801314209 6.100000e-26 130.0
15 TraesCS3A01G336500 chr1D 72.472 890 206 28 5078 5949 403729612 403728744 4.480000e-62 250.0
16 TraesCS3A01G336500 chr1D 93.103 87 6 0 6967 7053 160423852 160423938 2.190000e-25 128.0
17 TraesCS3A01G336500 chr1D 91.304 92 6 2 6968 7057 484555756 484555665 2.840000e-24 124.0
18 TraesCS3A01G336500 chr1B 72.185 888 207 29 5081 5949 543180326 543179460 1.260000e-57 235.0
19 TraesCS3A01G336500 chr7B 81.863 204 35 2 4028 4230 509569111 509568909 3.590000e-38 171.0
20 TraesCS3A01G336500 chr7D 81.373 204 36 2 4028 4230 483923939 483923737 1.670000e-36 165.0
21 TraesCS3A01G336500 chr7D 89.691 97 8 2 6963 7059 602951567 602951473 1.020000e-23 122.0
22 TraesCS3A01G336500 chr7A 81.373 204 36 2 4028 4230 550303419 550303217 1.670000e-36 165.0
23 TraesCS3A01G336500 chr4A 88.430 121 10 3 4364 4483 688787705 688787588 7.830000e-30 143.0
24 TraesCS3A01G336500 chr4A 100.000 28 0 0 1202 1229 710199876 710199903 1.400000e-02 52.8
25 TraesCS3A01G336500 chr4D 93.182 88 6 0 6968 7055 485409435 485409348 6.100000e-26 130.0
26 TraesCS3A01G336500 chr1A 93.182 88 6 0 6968 7055 409855440 409855353 6.100000e-26 130.0
27 TraesCS3A01G336500 chr5D 93.103 87 6 0 6966 7052 297738428 297738342 2.190000e-25 128.0
28 TraesCS3A01G336500 chr4B 90.000 100 9 1 6953 7052 437940365 437940463 2.190000e-25 128.0
29 TraesCS3A01G336500 chr2D 91.489 94 6 2 6968 7059 627158724 627158631 2.190000e-25 128.0
30 TraesCS3A01G336500 chr6B 75.109 229 51 6 4042 4267 461848224 461847999 1.330000e-17 102.0
31 TraesCS3A01G336500 chr2A 79.856 139 24 4 4135 4271 695150415 695150551 1.720000e-16 99.0
32 TraesCS3A01G336500 chr5B 78.899 109 23 0 4147 4255 142244800 142244908 2.900000e-09 75.0
33 TraesCS3A01G336500 chr5A 79.091 110 21 2 4147 4255 146534545 146534653 2.900000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G336500 chr3A 583239098 583246583 7485 False 13825.000000 13825 100.000000 1 7486 1 chr3A.!!$F1 7485
1 TraesCS3A01G336500 chr3D 442168371 442176715 8344 False 1473.814286 6900 88.137286 1 7486 7 chr3D.!!$F1 7485
2 TraesCS3A01G336500 chr3B 579446136 579454279 8143 False 1536.500000 3210 86.511167 6 7486 6 chr3B.!!$F1 7480
3 TraesCS3A01G336500 chr1D 403728744 403729612 868 True 250.000000 250 72.472000 5078 5949 1 chr1D.!!$R1 871
4 TraesCS3A01G336500 chr1B 543179460 543180326 866 True 235.000000 235 72.185000 5081 5949 1 chr1B.!!$R1 868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 427 0.036306 ACACTCCACCGGATGTTTCC 59.964 55.000 9.46 0.00 38.81 3.13 F
818 873 0.037605 GGTGTGTTCGTTCCTCCGAT 60.038 55.000 0.00 0.00 36.62 4.18 F
820 875 0.109458 TGTGTTCGTTCCTCCGATCG 60.109 55.000 8.51 8.51 36.62 3.69 F
1199 1266 0.112412 GCTCCACCCCCTTTTCTTCA 59.888 55.000 0.00 0.00 0.00 3.02 F
1678 1911 0.350904 TAGAGAGGGAGGGAGAGGGA 59.649 60.000 0.00 0.00 0.00 4.20 F
1686 1919 0.689412 GAGGGAGAGGGAAGGTGGAG 60.689 65.000 0.00 0.00 0.00 3.86 F
3301 4483 0.253044 TCTTCCTGCAGAATTCCGGG 59.747 55.000 17.39 2.49 32.82 5.73 F
3632 4820 0.392595 TGAATGCCTCTGCTCTGCTG 60.393 55.000 0.00 0.00 38.71 4.41 F
3752 4940 1.135915 TGCTCTCTTGATCGGCTTCTC 59.864 52.381 0.00 0.00 0.00 2.87 F
4140 5328 1.227853 GTGCAGAAGAACACCGGGT 60.228 57.895 6.32 0.00 0.00 5.28 F
5933 7243 0.610174 ATCAGCAGCTTTCCGTGAGA 59.390 50.000 0.00 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1670 1903 0.030603 ATCCTCCACCTTCCCTCTCC 60.031 60.000 0.00 0.0 0.00 3.71 R
2031 2271 0.038618 TTGCACGCGATGTCAGTAGT 60.039 50.000 15.93 0.0 0.00 2.73 R
2045 2285 1.669211 GGAGACGACTACCACTTGCAC 60.669 57.143 0.00 0.0 0.00 4.57 R
3138 4304 1.388531 GGAGTGGAGACAGGGGAGA 59.611 63.158 0.00 0.0 44.46 3.71 R
3283 4465 0.035056 ACCCGGAATTCTGCAGGAAG 60.035 55.000 15.13 0.0 37.36 3.46 R
3632 4820 5.330455 GGAATCACTTCCTTCCCAAATTC 57.670 43.478 0.00 0.0 46.44 2.17 R
5102 6406 1.902508 CCTGGCAACTGAGAAGAGGTA 59.097 52.381 0.00 0.0 37.83 3.08 R
5585 6889 0.686789 TGCTGCTAGAGTTGGCTTCA 59.313 50.000 0.00 0.0 0.00 3.02 R
5609 6913 1.480545 GTACCCCCAAATGGTGCAATC 59.519 52.381 0.00 0.0 38.26 2.67 R
6087 7400 0.883833 AGCTGAAAAACATCAGGCGG 59.116 50.000 6.46 0.0 45.60 6.13 R
7191 8560 0.179029 ACGCTGTTTTGTAGGCCAGT 60.179 50.000 5.01 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 0.393077 AAGGGAGGATACGGCAATCG 59.607 55.000 0.00 0.00 46.39 3.34
77 79 0.039074 AGGCAGCTATACGTGCGATC 60.039 55.000 0.00 0.00 40.82 3.69
142 144 0.834612 TTCCAGGTCACGGTCAAGTT 59.165 50.000 0.00 0.00 0.00 2.66
189 191 3.487942 TCGTTCAAATGCATATACGTCCG 59.512 43.478 16.88 8.10 0.00 4.79
194 199 3.299340 AATGCATATACGTCCGTCTCC 57.701 47.619 0.00 0.00 0.00 3.71
197 202 1.878088 GCATATACGTCCGTCTCCTCA 59.122 52.381 0.00 0.00 0.00 3.86
207 212 1.534175 CCGTCTCCTCAGTGCGTATTC 60.534 57.143 0.00 0.00 0.00 1.75
218 223 0.461339 TGCGTATTCGAAGGAAGGGC 60.461 55.000 3.35 1.98 39.71 5.19
221 226 1.145377 TATTCGAAGGAAGGGCCGC 59.855 57.895 3.35 0.00 43.43 6.53
324 329 0.725686 CATGTCCGCTTCTTCTGCAG 59.274 55.000 7.63 7.63 0.00 4.41
325 330 0.392193 ATGTCCGCTTCTTCTGCAGG 60.392 55.000 15.13 0.00 0.00 4.85
338 343 4.468868 TCTTCTGCAGGAGATGAAGATGAA 59.531 41.667 21.41 0.00 43.57 2.57
366 371 5.565439 GCACACAGTTTGCCTTTCAAGATAT 60.565 40.000 0.00 0.00 35.84 1.63
367 372 6.349280 GCACACAGTTTGCCTTTCAAGATATA 60.349 38.462 0.00 0.00 35.84 0.86
373 378 9.125026 CAGTTTGCCTTTCAAGATATATACCTT 57.875 33.333 0.00 0.00 35.84 3.50
383 388 7.982224 TCAAGATATATACCTTATCCGTCACG 58.018 38.462 0.00 0.00 0.00 4.35
414 419 2.231820 GTTTTCGACACTCCACCGG 58.768 57.895 0.00 0.00 0.00 5.28
415 420 0.249573 GTTTTCGACACTCCACCGGA 60.250 55.000 9.46 0.00 0.00 5.14
416 421 0.682852 TTTTCGACACTCCACCGGAT 59.317 50.000 9.46 0.00 0.00 4.18
418 423 1.183030 TTCGACACTCCACCGGATGT 61.183 55.000 9.46 3.91 0.00 3.06
420 425 0.320421 CGACACTCCACCGGATGTTT 60.320 55.000 9.46 0.00 0.00 2.83
421 426 1.439679 GACACTCCACCGGATGTTTC 58.560 55.000 9.46 0.00 0.00 2.78
422 427 0.036306 ACACTCCACCGGATGTTTCC 59.964 55.000 9.46 0.00 38.81 3.13
510 516 8.796475 AGTACATGCAAAATTGTCAGATAAACT 58.204 29.630 0.00 0.00 0.00 2.66
566 577 1.732259 ACGCATGAACTTTCACGATCC 59.268 47.619 0.00 0.00 40.49 3.36
578 589 3.804786 TCACGATCCATACGGCTTTAA 57.195 42.857 0.00 0.00 34.93 1.52
608 619 6.245408 ACCACCAGTACATGTAATTTGTCAT 58.755 36.000 7.25 0.00 0.00 3.06
610 621 7.885922 ACCACCAGTACATGTAATTTGTCATAA 59.114 33.333 7.25 0.00 0.00 1.90
818 873 0.037605 GGTGTGTTCGTTCCTCCGAT 60.038 55.000 0.00 0.00 36.62 4.18
819 874 1.347320 GTGTGTTCGTTCCTCCGATC 58.653 55.000 0.00 0.00 36.62 3.69
820 875 0.109458 TGTGTTCGTTCCTCCGATCG 60.109 55.000 8.51 8.51 36.62 3.69
906 961 4.500127 ACACAATACATACGCAAGCACTA 58.500 39.130 0.00 0.00 45.62 2.74
907 962 5.116180 ACACAATACATACGCAAGCACTAT 58.884 37.500 0.00 0.00 45.62 2.12
908 963 6.277605 ACACAATACATACGCAAGCACTATA 58.722 36.000 0.00 0.00 45.62 1.31
909 964 6.929049 ACACAATACATACGCAAGCACTATAT 59.071 34.615 0.00 0.00 45.62 0.86
910 965 8.085909 ACACAATACATACGCAAGCACTATATA 58.914 33.333 0.00 0.00 45.62 0.86
911 966 9.087424 CACAATACATACGCAAGCACTATATAT 57.913 33.333 0.00 0.00 45.62 0.86
914 969 9.447040 AATACATACGCAAGCACTATATATACG 57.553 33.333 0.00 0.00 45.62 3.06
915 970 5.742453 ACATACGCAAGCACTATATATACGC 59.258 40.000 2.42 2.42 45.62 4.42
917 972 2.035674 CGCAAGCACTATATATACGCGC 60.036 50.000 5.73 0.00 33.32 6.86
918 973 2.921121 GCAAGCACTATATATACGCGCA 59.079 45.455 5.73 0.00 0.00 6.09
919 974 3.551890 GCAAGCACTATATATACGCGCAT 59.448 43.478 5.73 0.00 0.00 4.73
920 975 4.738252 GCAAGCACTATATATACGCGCATA 59.262 41.667 5.73 2.88 0.00 3.14
921 976 5.108217 GCAAGCACTATATATACGCGCATAG 60.108 44.000 5.73 8.43 0.00 2.23
922 977 6.199393 CAAGCACTATATATACGCGCATAGA 58.801 40.000 5.73 0.00 0.00 1.98
923 978 5.749620 AGCACTATATATACGCGCATAGAC 58.250 41.667 5.73 4.36 0.00 2.59
925 980 5.138095 CACTATATATACGCGCATAGACCG 58.862 45.833 5.73 0.00 0.00 4.79
926 981 4.813161 ACTATATATACGCGCATAGACCGT 59.187 41.667 5.73 0.00 38.84 4.83
927 982 2.539346 ATATACGCGCATAGACCGTC 57.461 50.000 5.73 0.00 36.51 4.79
928 983 0.518636 TATACGCGCATAGACCGTCC 59.481 55.000 5.73 0.00 36.51 4.79
931 986 3.537874 GCGCATAGACCGTCCCCT 61.538 66.667 0.30 0.00 0.00 4.79
932 987 2.198287 GCGCATAGACCGTCCCCTA 61.198 63.158 0.30 0.00 0.00 3.53
933 988 1.533469 GCGCATAGACCGTCCCCTAT 61.533 60.000 0.30 0.00 0.00 2.57
934 989 0.243907 CGCATAGACCGTCCCCTATG 59.756 60.000 0.00 0.00 42.99 2.23
937 992 2.288886 GCATAGACCGTCCCCTATGAAC 60.289 54.545 12.09 0.00 42.84 3.18
938 993 1.683943 TAGACCGTCCCCTATGAACG 58.316 55.000 0.00 0.00 36.22 3.95
939 994 1.227176 GACCGTCCCCTATGAACGC 60.227 63.158 0.00 0.00 35.17 4.84
940 995 1.952102 GACCGTCCCCTATGAACGCA 61.952 60.000 0.00 0.00 35.17 5.24
941 996 1.520787 CCGTCCCCTATGAACGCAC 60.521 63.158 0.00 0.00 35.17 5.34
942 997 1.216977 CGTCCCCTATGAACGCACA 59.783 57.895 0.00 0.00 0.00 4.57
943 998 0.390603 CGTCCCCTATGAACGCACAA 60.391 55.000 0.00 0.00 0.00 3.33
944 999 1.084289 GTCCCCTATGAACGCACAAC 58.916 55.000 0.00 0.00 0.00 3.32
955 1010 3.203275 CGCACAACGCATACACATC 57.797 52.632 0.00 0.00 42.60 3.06
956 1011 0.247655 CGCACAACGCATACACATCC 60.248 55.000 0.00 0.00 42.60 3.51
957 1012 1.086696 GCACAACGCATACACATCCT 58.913 50.000 0.00 0.00 41.79 3.24
960 1015 3.059597 GCACAACGCATACACATCCTATC 60.060 47.826 0.00 0.00 41.79 2.08
961 1016 3.182372 CACAACGCATACACATCCTATCG 59.818 47.826 0.00 0.00 0.00 2.92
962 1017 2.065993 ACGCATACACATCCTATCGC 57.934 50.000 0.00 0.00 0.00 4.58
963 1018 1.613925 ACGCATACACATCCTATCGCT 59.386 47.619 0.00 0.00 0.00 4.93
964 1019 1.988467 CGCATACACATCCTATCGCTG 59.012 52.381 0.00 0.00 0.00 5.18
972 1027 1.114627 ATCCTATCGCTGTGAGCACA 58.885 50.000 3.02 3.02 42.58 4.57
976 1031 0.249031 TATCGCTGTGAGCACATCCG 60.249 55.000 3.49 9.96 42.58 4.18
983 1038 0.528017 GTGAGCACATCCGAGAGACA 59.472 55.000 0.00 0.00 0.00 3.41
984 1039 1.067565 GTGAGCACATCCGAGAGACAA 60.068 52.381 0.00 0.00 0.00 3.18
990 1045 2.738846 CACATCCGAGAGACAAAACCAG 59.261 50.000 0.00 0.00 0.00 4.00
1005 1060 2.267174 ACCAGCATACCATCATGAGC 57.733 50.000 0.09 0.00 0.00 4.26
1012 1067 5.297527 CAGCATACCATCATGAGCTTTTACA 59.702 40.000 0.09 0.00 0.00 2.41
1052 1107 3.431922 GTATTCGACGGGAACATCTCA 57.568 47.619 0.00 0.00 37.50 3.27
1069 1124 2.031919 ATCCCACTCAACGCGCAA 59.968 55.556 5.73 0.00 0.00 4.85
1070 1125 1.599518 ATCCCACTCAACGCGCAAA 60.600 52.632 5.73 0.00 0.00 3.68
1071 1126 1.852067 ATCCCACTCAACGCGCAAAC 61.852 55.000 5.73 0.00 0.00 2.93
1120 1184 4.034975 CCATTCGATCAGCTCCTCTTTTTC 59.965 45.833 0.00 0.00 0.00 2.29
1121 1185 3.252974 TCGATCAGCTCCTCTTTTTCC 57.747 47.619 0.00 0.00 0.00 3.13
1167 1234 8.918202 TTCCATATGAATGAATAGGGTTACAC 57.082 34.615 3.65 0.00 35.81 2.90
1184 1251 3.932545 ACACTCATATCGATCAGCTCC 57.067 47.619 0.00 0.00 0.00 4.70
1185 1252 3.225940 ACACTCATATCGATCAGCTCCA 58.774 45.455 0.00 0.00 0.00 3.86
1187 1254 2.560542 ACTCATATCGATCAGCTCCACC 59.439 50.000 0.00 0.00 0.00 4.61
1190 1257 0.832135 TATCGATCAGCTCCACCCCC 60.832 60.000 0.00 0.00 0.00 5.40
1199 1266 0.112412 GCTCCACCCCCTTTTCTTCA 59.888 55.000 0.00 0.00 0.00 3.02
1258 1327 2.566724 CCCTATTGATCAGCTCCTCTCC 59.433 54.545 0.00 0.00 0.00 3.71
1269 1338 0.736053 CTCCTCTCCTAGTGTCGTGC 59.264 60.000 0.00 0.00 0.00 5.34
1278 1347 2.417651 CCTAGTGTCGTGCCCGAAATTA 60.418 50.000 0.00 0.00 46.26 1.40
1279 1348 2.396590 AGTGTCGTGCCCGAAATTAT 57.603 45.000 0.00 0.00 46.26 1.28
1329 1520 2.049063 GCGCCAGTGTCGTCTTCT 60.049 61.111 0.00 0.00 0.00 2.85
1330 1521 2.089349 GCGCCAGTGTCGTCTTCTC 61.089 63.158 0.00 0.00 0.00 2.87
1333 1524 1.536943 GCCAGTGTCGTCTTCTCCCT 61.537 60.000 0.00 0.00 0.00 4.20
1417 1610 2.293170 GGAGCTGGGTGAAAGATTAGC 58.707 52.381 0.00 0.00 0.00 3.09
1428 1621 7.067008 TGGGTGAAAGATTAGCTAGTTAATTGC 59.933 37.037 12.47 2.38 0.00 3.56
1495 1688 6.486320 TGAGAACTGCATATTCTTGTTCACAA 59.514 34.615 13.10 0.00 39.33 3.33
1496 1689 7.013178 TGAGAACTGCATATTCTTGTTCACAAA 59.987 33.333 13.10 0.00 39.33 2.83
1497 1690 7.365741 AGAACTGCATATTCTTGTTCACAAAG 58.634 34.615 13.27 0.00 39.33 2.77
1499 1692 5.009911 ACTGCATATTCTTGTTCACAAAGCA 59.990 36.000 0.00 0.00 35.15 3.91
1500 1693 6.028146 TGCATATTCTTGTTCACAAAGCAT 57.972 33.333 0.00 0.00 35.15 3.79
1501 1694 7.094248 ACTGCATATTCTTGTTCACAAAGCATA 60.094 33.333 0.00 0.00 35.15 3.14
1502 1695 7.028962 TGCATATTCTTGTTCACAAAGCATAC 58.971 34.615 0.00 0.00 35.15 2.39
1503 1696 7.094248 TGCATATTCTTGTTCACAAAGCATACT 60.094 33.333 0.00 0.00 35.15 2.12
1508 1701 8.896320 TTCTTGTTCACAAAGCATACTAGTTA 57.104 30.769 0.00 0.00 35.15 2.24
1511 1704 9.760660 CTTGTTCACAAAGCATACTAGTTAATC 57.239 33.333 0.00 0.00 35.15 1.75
1522 1715 9.847706 AGCATACTAGTTAATCAATCATACTCG 57.152 33.333 0.00 0.00 0.00 4.18
1571 1797 2.774439 AACAATAAATCCGCGATGGC 57.226 45.000 8.23 0.00 37.80 4.40
1594 1820 6.745907 GGCGACTTGTCCACTTTAAATATTTC 59.254 38.462 3.39 0.00 0.00 2.17
1619 1848 1.271446 CTCTGTACCATGATCGCGCG 61.271 60.000 26.76 26.76 0.00 6.86
1640 1869 1.475930 GGAGAATAGGGACAAGCTGCC 60.476 57.143 0.00 0.00 0.00 4.85
1670 1903 3.839778 CCTAGAGGTTTAGAGAGGGAGG 58.160 54.545 0.00 0.00 0.00 4.30
1676 1909 2.673258 GTTTAGAGAGGGAGGGAGAGG 58.327 57.143 0.00 0.00 0.00 3.69
1678 1911 0.350904 TAGAGAGGGAGGGAGAGGGA 59.649 60.000 0.00 0.00 0.00 4.20
1682 1915 1.869452 AGGGAGGGAGAGGGAAGGT 60.869 63.158 0.00 0.00 0.00 3.50
1683 1916 1.690985 GGGAGGGAGAGGGAAGGTG 60.691 68.421 0.00 0.00 0.00 4.00
1684 1917 1.690985 GGAGGGAGAGGGAAGGTGG 60.691 68.421 0.00 0.00 0.00 4.61
1685 1918 1.392534 GAGGGAGAGGGAAGGTGGA 59.607 63.158 0.00 0.00 0.00 4.02
1686 1919 0.689412 GAGGGAGAGGGAAGGTGGAG 60.689 65.000 0.00 0.00 0.00 3.86
1687 1920 1.690985 GGGAGAGGGAAGGTGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
1699 1932 5.221742 GGGAAGGTGGAGGATTAGATTACTG 60.222 48.000 0.00 0.00 0.00 2.74
1710 1943 8.421249 AGGATTAGATTACTGATGAGAGGAAG 57.579 38.462 0.00 0.00 0.00 3.46
1715 1948 6.910191 AGATTACTGATGAGAGGAAGAGAGA 58.090 40.000 0.00 0.00 0.00 3.10
1723 1956 2.965147 GAGAGGAAGAGAGATGGAAGGG 59.035 54.545 0.00 0.00 0.00 3.95
1817 2050 0.938637 GCGAGAGATGCACGGAGATG 60.939 60.000 0.00 0.00 0.00 2.90
1885 2119 1.944024 TGGGCGTAGTTTTTGTGTCTG 59.056 47.619 0.00 0.00 0.00 3.51
1906 2142 6.321690 GTCTGGTTACATCATGTACCTAGTCT 59.678 42.308 5.75 0.00 31.69 3.24
1955 2195 6.338937 AGTAGTAACTCTTTTATCCAAGCGG 58.661 40.000 0.00 0.00 0.00 5.52
1990 2230 3.305335 GCACCCTGTAACAAATGGTCTTG 60.305 47.826 0.00 0.00 0.00 3.02
2045 2285 1.999051 GGCAACTACTGACATCGCG 59.001 57.895 0.00 0.00 30.79 5.87
2081 2321 6.555360 AGTCGTCTCCTCCTGGATAATAATTT 59.445 38.462 0.00 0.00 42.29 1.82
2104 2344 9.906660 ATTTGACTAAGAAACATATTTTTCGCA 57.093 25.926 8.35 1.24 39.96 5.10
2105 2345 9.737427 TTTGACTAAGAAACATATTTTTCGCAA 57.263 25.926 8.35 6.95 39.96 4.85
2106 2346 9.737427 TTGACTAAGAAACATATTTTTCGCAAA 57.263 25.926 8.35 0.00 39.96 3.68
2107 2347 9.737427 TGACTAAGAAACATATTTTTCGCAAAA 57.263 25.926 8.35 0.00 39.96 2.44
2129 2369 6.867662 AAAAAGGACTAAGAGACATGTGTG 57.132 37.500 1.15 0.00 0.00 3.82
2250 2494 9.807649 ATCCTGAATAATTTTGCTAATGTTCAC 57.192 29.630 0.00 0.00 0.00 3.18
2277 2528 4.650545 AAATCAACATGCATTTGTTCGC 57.349 36.364 16.17 0.00 37.73 4.70
2335 2593 3.699779 TGCGACATGTGCTAAAAACAA 57.300 38.095 1.15 0.00 0.00 2.83
2347 2605 8.627487 TGTGCTAAAAACAAACTTATCACTTG 57.373 30.769 0.00 0.00 29.62 3.16
2386 2644 6.027131 GGAGCACCAAATTTTGTTTTGTTTC 58.973 36.000 8.26 5.21 35.30 2.78
2406 3517 6.765512 TGTTTCTCACATCACAACATAAGTCA 59.234 34.615 0.00 0.00 0.00 3.41
2460 3578 8.742554 AGGACGCACAAATTAAGATTTTTAAG 57.257 30.769 0.00 0.00 33.25 1.85
2462 3580 9.353999 GGACGCACAAATTAAGATTTTTAAGAT 57.646 29.630 0.00 0.00 33.25 2.40
2523 3662 6.187727 ACTTTGTCCCTCTTTTGTGAGATA 57.812 37.500 0.00 0.00 36.23 1.98
2557 3696 7.225784 TGCTTGAGTATGCTAATTCCAAAAA 57.774 32.000 0.00 0.00 0.00 1.94
2559 3698 8.313292 TGCTTGAGTATGCTAATTCCAAAAATT 58.687 29.630 0.00 0.00 0.00 1.82
2560 3699 9.801873 GCTTGAGTATGCTAATTCCAAAAATTA 57.198 29.630 0.00 0.00 0.00 1.40
2563 3702 9.748708 TGAGTATGCTAATTCCAAAAATTATGC 57.251 29.630 0.00 0.00 0.00 3.14
2576 3717 9.625747 TCCAAAAATTATGCTATGTATGAGTCA 57.374 29.630 0.00 0.00 0.00 3.41
2577 3718 9.669353 CCAAAAATTATGCTATGTATGAGTCAC 57.331 33.333 0.00 0.00 0.00 3.67
2579 3720 8.978874 AAAATTATGCTATGTATGAGTCACCA 57.021 30.769 0.00 0.00 0.00 4.17
2580 3721 7.969536 AATTATGCTATGTATGAGTCACCAC 57.030 36.000 0.00 0.00 0.00 4.16
2612 3753 6.024552 TCACAATTTCCACCTTTTATGCTC 57.975 37.500 0.00 0.00 0.00 4.26
2631 3772 5.462034 GCTCTATGCACAACTAAGTCTTG 57.538 43.478 0.00 0.00 42.31 3.02
2673 3814 9.978044 AAATAAATTATACTACTCCGTCTGACC 57.022 33.333 1.55 0.00 0.00 4.02
2685 3826 7.554959 ACTCCGTCTGACCCATATTAATTAT 57.445 36.000 1.55 0.00 0.00 1.28
2689 3830 5.063438 CGTCTGACCCATATTAATTATGCGG 59.937 44.000 1.55 3.10 37.04 5.69
2705 3846 4.989279 ATGCGGCAATTAATATGGATCC 57.011 40.909 6.82 4.20 0.00 3.36
2713 3854 5.338381 GCAATTAATATGGATCCGAGGGAGA 60.338 44.000 7.39 0.00 34.05 3.71
2716 3857 3.835478 ATATGGATCCGAGGGAGAAGA 57.165 47.619 7.39 0.00 34.05 2.87
2718 3859 2.478872 TGGATCCGAGGGAGAAGAAT 57.521 50.000 7.39 0.00 34.05 2.40
2719 3860 3.612795 TGGATCCGAGGGAGAAGAATA 57.387 47.619 7.39 0.00 34.05 1.75
2720 3861 3.501349 TGGATCCGAGGGAGAAGAATAG 58.499 50.000 7.39 0.00 34.05 1.73
2728 3869 8.123639 TCCGAGGGAGAAGAATAGTATATTTG 57.876 38.462 0.00 0.00 0.00 2.32
2747 3888 4.839668 TTGTGTACTATTTGTGCCCAAC 57.160 40.909 0.00 0.00 0.00 3.77
2905 4050 1.613520 GCCGAAAATATAGGGGGCTCC 60.614 57.143 0.00 0.00 37.57 4.70
3048 4214 2.499693 CTCTCCTCCCTCAAAACTCTCC 59.500 54.545 0.00 0.00 0.00 3.71
3138 4304 3.433598 CGAGAGAGGGACAGAGAGAGATT 60.434 52.174 0.00 0.00 0.00 2.40
3218 4400 4.426112 TGCAGCTCAGCTCCGTCG 62.426 66.667 0.00 0.00 36.40 5.12
3220 4402 4.127040 CAGCTCAGCTCCGTCGCT 62.127 66.667 0.00 0.00 41.90 4.93
3227 4409 3.482783 GCTCCGTCGCTGTTCAGC 61.483 66.667 13.97 13.97 0.00 4.26
3283 4465 1.403687 ATTCGGCCAGGTAGCTCCTC 61.404 60.000 2.24 0.00 46.24 3.71
3301 4483 0.253044 TCTTCCTGCAGAATTCCGGG 59.747 55.000 17.39 2.49 32.82 5.73
3570 4758 3.070018 CCGAGTTCTTGAGCTCAAACAT 58.930 45.455 28.16 15.23 35.15 2.71
3571 4759 3.120408 CCGAGTTCTTGAGCTCAAACATG 60.120 47.826 28.16 17.28 35.15 3.21
3572 4760 3.496130 CGAGTTCTTGAGCTCAAACATGT 59.504 43.478 28.16 13.11 35.15 3.21
3573 4761 4.024556 CGAGTTCTTGAGCTCAAACATGTT 60.025 41.667 28.16 4.92 35.15 2.71
3574 4762 5.177511 CGAGTTCTTGAGCTCAAACATGTTA 59.822 40.000 28.16 5.46 35.15 2.41
3575 4763 6.305693 AGTTCTTGAGCTCAAACATGTTAC 57.694 37.500 28.16 17.44 35.15 2.50
3576 4764 6.058183 AGTTCTTGAGCTCAAACATGTTACT 58.942 36.000 28.16 18.96 35.15 2.24
3577 4765 7.217200 AGTTCTTGAGCTCAAACATGTTACTA 58.783 34.615 28.16 3.43 35.15 1.82
3578 4766 7.171678 AGTTCTTGAGCTCAAACATGTTACTAC 59.828 37.037 28.16 11.68 35.15 2.73
3579 4767 6.759272 TCTTGAGCTCAAACATGTTACTACT 58.241 36.000 28.16 7.62 35.15 2.57
3580 4768 7.892609 TCTTGAGCTCAAACATGTTACTACTA 58.107 34.615 28.16 2.11 35.15 1.82
3581 4769 7.813148 TCTTGAGCTCAAACATGTTACTACTAC 59.187 37.037 28.16 2.48 35.15 2.73
3582 4770 7.228314 TGAGCTCAAACATGTTACTACTACT 57.772 36.000 15.67 3.48 0.00 2.57
3632 4820 0.392595 TGAATGCCTCTGCTCTGCTG 60.393 55.000 0.00 0.00 38.71 4.41
3687 4875 1.946768 TCTCCAGGTTTTTCAGTTGCG 59.053 47.619 0.00 0.00 0.00 4.85
3708 4896 3.486841 CGGCACAATAAATACATGCTTGC 59.513 43.478 0.00 0.00 36.52 4.01
3719 4907 7.766219 AAATACATGCTTGCTTTCATGATTC 57.234 32.000 15.79 0.00 41.82 2.52
3728 4916 8.308931 TGCTTGCTTTCATGATTCTCTAAAAAT 58.691 29.630 0.00 0.00 0.00 1.82
3752 4940 1.135915 TGCTCTCTTGATCGGCTTCTC 59.864 52.381 0.00 0.00 0.00 2.87
3808 4996 4.090642 GTGTGATTCAAGCAGTAGAACTCG 59.909 45.833 0.00 0.00 0.00 4.18
3895 5083 5.347364 TCTTTCTTTTTGTTTGTTCTTGGCG 59.653 36.000 0.00 0.00 0.00 5.69
4046 5234 2.124942 GGGCCGCCTCTGAAGAAG 60.125 66.667 9.86 0.00 0.00 2.85
4049 5237 2.124942 CCGCCTCTGAAGAAGGGC 60.125 66.667 1.40 1.40 38.31 5.19
4140 5328 1.227853 GTGCAGAAGAACACCGGGT 60.228 57.895 6.32 0.00 0.00 5.28
4407 5595 3.693807 TGAGCCTTGCATGATTTCTTCT 58.306 40.909 0.00 0.00 0.00 2.85
4472 5666 7.482654 TCGATTGATGATTGTTCTGAATACC 57.517 36.000 0.00 0.00 0.00 2.73
4560 5754 4.215613 GGCCTTTCCTGTTACTTACTGTTG 59.784 45.833 0.00 0.00 0.00 3.33
4568 5762 5.177696 CCTGTTACTTACTGTTGTTGCTCTC 59.822 44.000 0.00 0.00 0.00 3.20
4664 5942 7.261325 ACATACTGTGTTCAGCTCTACTATTG 58.739 38.462 0.00 0.00 44.77 1.90
4774 6055 1.856265 CTTGACTGCGTTCAAGGGGC 61.856 60.000 16.01 0.00 46.02 5.80
4830 6111 9.794719 AAATTGACTATTATTAGTTAGGGGCTC 57.205 33.333 0.00 0.00 38.81 4.70
4995 6289 3.252215 TGATCCATGTTTTTCACACCGAC 59.748 43.478 0.00 0.00 38.61 4.79
4996 6290 1.950909 TCCATGTTTTTCACACCGACC 59.049 47.619 0.00 0.00 38.61 4.79
5019 6313 8.021898 ACCCCATTGAAAAATAGGTTATCATG 57.978 34.615 0.00 0.00 0.00 3.07
5020 6314 7.623278 ACCCCATTGAAAAATAGGTTATCATGT 59.377 33.333 0.00 0.00 0.00 3.21
5021 6315 9.142014 CCCCATTGAAAAATAGGTTATCATGTA 57.858 33.333 0.00 0.00 0.00 2.29
5022 6316 9.965824 CCCATTGAAAAATAGGTTATCATGTAC 57.034 33.333 0.00 0.00 0.00 2.90
5062 6366 8.862325 TCCTGTGTACATGATTCTTGTATTTT 57.138 30.769 13.61 0.00 32.56 1.82
5585 6889 4.384647 GCTCTGGGTTTTGACTATCTCCAT 60.385 45.833 0.00 0.00 0.00 3.41
5609 6913 1.669779 GCCAACTCTAGCAGCAAGATG 59.330 52.381 0.00 0.00 0.00 2.90
5804 7108 2.576648 GGAGTTGGTTGATCCCTACCTT 59.423 50.000 9.38 0.00 38.70 3.50
5902 7212 4.836825 CTTCATGAAGCTCAGGGACTAAA 58.163 43.478 21.96 0.00 36.02 1.85
5933 7243 0.610174 ATCAGCAGCTTTCCGTGAGA 59.390 50.000 0.00 0.00 0.00 3.27
5994 7304 3.054655 GGTGGTTAGCCCAGAGTTTGATA 60.055 47.826 0.00 0.00 46.45 2.15
6233 7549 3.313874 CCTTCGCTGGGATCTGGT 58.686 61.111 0.00 0.00 0.00 4.00
6556 7872 4.144297 TCACCCTGATTGTTTTGAGGAAG 58.856 43.478 0.00 0.00 0.00 3.46
6616 7934 1.890894 CCGTCGACAGGTCCTTGAT 59.109 57.895 17.16 0.00 0.00 2.57
6620 7938 1.191489 TCGACAGGTCCTTGATGGCA 61.191 55.000 0.00 0.00 35.26 4.92
6626 7944 0.877071 GGTCCTTGATGGCATATGCG 59.123 55.000 21.04 6.34 43.26 4.73
6639 7957 0.979665 ATATGCGGCTGCTACCAGAT 59.020 50.000 20.27 4.97 41.77 2.90
6737 8056 4.812626 TGTTTGTTTCGAACTAGAGAACCC 59.187 41.667 0.00 0.00 0.00 4.11
6794 8113 7.986085 ACAATGTAAGATCAGTTACTGCTTT 57.014 32.000 7.61 4.55 34.51 3.51
6795 8114 8.396272 ACAATGTAAGATCAGTTACTGCTTTT 57.604 30.769 7.61 2.39 34.51 2.27
6796 8115 8.507249 ACAATGTAAGATCAGTTACTGCTTTTC 58.493 33.333 7.61 2.42 34.51 2.29
6831 8152 2.376518 TCTCTTGCTGAACATTTCCCCT 59.623 45.455 0.00 0.00 0.00 4.79
6850 8171 4.023707 CCCCTCAAATTGTCAATCGATAGC 60.024 45.833 0.00 0.00 0.00 2.97
6898 8220 0.678366 TGTTTGTGTGCTGGGTTCGT 60.678 50.000 0.00 0.00 0.00 3.85
6899 8221 1.301423 GTTTGTGTGCTGGGTTCGTA 58.699 50.000 0.00 0.00 0.00 3.43
6900 8222 1.003223 GTTTGTGTGCTGGGTTCGTAC 60.003 52.381 0.00 0.00 0.00 3.67
6901 8223 0.466543 TTGTGTGCTGGGTTCGTACT 59.533 50.000 0.00 0.00 0.00 2.73
6902 8224 0.466543 TGTGTGCTGGGTTCGTACTT 59.533 50.000 0.00 0.00 0.00 2.24
6903 8225 1.145803 GTGTGCTGGGTTCGTACTTC 58.854 55.000 0.00 0.00 0.00 3.01
6904 8226 1.045407 TGTGCTGGGTTCGTACTTCT 58.955 50.000 0.00 0.00 0.00 2.85
6905 8227 1.414919 TGTGCTGGGTTCGTACTTCTT 59.585 47.619 0.00 0.00 0.00 2.52
6906 8228 2.067013 GTGCTGGGTTCGTACTTCTTC 58.933 52.381 0.00 0.00 0.00 2.87
6907 8229 1.968493 TGCTGGGTTCGTACTTCTTCT 59.032 47.619 0.00 0.00 0.00 2.85
6908 8230 2.367567 TGCTGGGTTCGTACTTCTTCTT 59.632 45.455 0.00 0.00 0.00 2.52
6909 8231 2.994578 GCTGGGTTCGTACTTCTTCTTC 59.005 50.000 0.00 0.00 0.00 2.87
6912 8234 4.879598 TGGGTTCGTACTTCTTCTTCTTC 58.120 43.478 0.00 0.00 0.00 2.87
6924 8246 5.429957 TCTTCTTCTTCTTTTCAGCTTGC 57.570 39.130 0.00 0.00 0.00 4.01
6928 8250 4.514441 TCTTCTTCTTTTCAGCTTGCTCTG 59.486 41.667 0.00 0.00 35.46 3.35
6930 8252 4.960938 TCTTCTTTTCAGCTTGCTCTGTA 58.039 39.130 0.00 0.00 35.63 2.74
6939 8261 3.812053 CAGCTTGCTCTGTAAACTTGACT 59.188 43.478 0.00 0.00 0.00 3.41
6940 8262 4.274459 CAGCTTGCTCTGTAAACTTGACTT 59.726 41.667 0.00 0.00 0.00 3.01
6943 8265 7.331934 CAGCTTGCTCTGTAAACTTGACTTATA 59.668 37.037 0.00 0.00 0.00 0.98
6944 8266 7.332182 AGCTTGCTCTGTAAACTTGACTTATAC 59.668 37.037 0.00 0.00 0.00 1.47
6945 8267 7.332182 GCTTGCTCTGTAAACTTGACTTATACT 59.668 37.037 0.00 0.00 0.00 2.12
6946 8268 8.758633 TTGCTCTGTAAACTTGACTTATACTC 57.241 34.615 0.00 0.00 0.00 2.59
6947 8269 8.123639 TGCTCTGTAAACTTGACTTATACTCT 57.876 34.615 0.00 0.00 0.00 3.24
6948 8270 8.244802 TGCTCTGTAAACTTGACTTATACTCTC 58.755 37.037 0.00 0.00 0.00 3.20
6949 8271 7.703197 GCTCTGTAAACTTGACTTATACTCTCC 59.297 40.741 0.00 0.00 0.00 3.71
6950 8272 8.645814 TCTGTAAACTTGACTTATACTCTCCA 57.354 34.615 0.00 0.00 0.00 3.86
6962 8322 4.833478 ATACTCTCCATCAAGCTGTTGT 57.167 40.909 0.00 0.00 34.98 3.32
6963 8323 3.498774 ACTCTCCATCAAGCTGTTGTT 57.501 42.857 0.00 0.00 34.98 2.83
6972 8332 6.426937 TCCATCAAGCTGTTGTTTAGTACTTC 59.573 38.462 0.00 0.00 34.98 3.01
6973 8333 6.348540 CCATCAAGCTGTTGTTTAGTACTTCC 60.349 42.308 0.00 0.00 34.98 3.46
6974 8334 5.925509 TCAAGCTGTTGTTTAGTACTTCCT 58.074 37.500 0.00 0.00 34.98 3.36
6975 8335 5.989777 TCAAGCTGTTGTTTAGTACTTCCTC 59.010 40.000 0.00 0.00 34.98 3.71
6976 8336 5.810080 AGCTGTTGTTTAGTACTTCCTCT 57.190 39.130 0.00 0.00 0.00 3.69
6977 8337 5.542779 AGCTGTTGTTTAGTACTTCCTCTG 58.457 41.667 0.00 0.00 0.00 3.35
6978 8338 5.070580 AGCTGTTGTTTAGTACTTCCTCTGT 59.929 40.000 0.00 0.00 0.00 3.41
6979 8339 5.758784 GCTGTTGTTTAGTACTTCCTCTGTT 59.241 40.000 0.00 0.00 0.00 3.16
6980 8340 6.073711 GCTGTTGTTTAGTACTTCCTCTGTTC 60.074 42.308 0.00 0.00 0.00 3.18
6981 8341 6.285990 TGTTGTTTAGTACTTCCTCTGTTCC 58.714 40.000 0.00 0.00 0.00 3.62
6982 8342 6.126997 TGTTGTTTAGTACTTCCTCTGTTCCA 60.127 38.462 0.00 0.00 0.00 3.53
6983 8343 6.681729 TGTTTAGTACTTCCTCTGTTCCAT 57.318 37.500 0.00 0.00 0.00 3.41
6985 8345 8.197592 TGTTTAGTACTTCCTCTGTTCCATAA 57.802 34.615 0.00 0.00 0.00 1.90
6987 8347 9.099454 GTTTAGTACTTCCTCTGTTCCATAATG 57.901 37.037 0.00 0.00 0.00 1.90
6989 8349 7.973048 AGTACTTCCTCTGTTCCATAATGTA 57.027 36.000 0.00 0.00 0.00 2.29
6990 8350 8.375493 AGTACTTCCTCTGTTCCATAATGTAA 57.625 34.615 0.00 0.00 0.00 2.41
6991 8351 8.478877 AGTACTTCCTCTGTTCCATAATGTAAG 58.521 37.037 0.00 0.00 0.00 2.34
6992 8352 7.496346 ACTTCCTCTGTTCCATAATGTAAGA 57.504 36.000 0.00 0.00 0.00 2.10
6994 8354 7.989741 ACTTCCTCTGTTCCATAATGTAAGATG 59.010 37.037 0.00 0.00 0.00 2.90
6995 8355 7.437713 TCCTCTGTTCCATAATGTAAGATGT 57.562 36.000 0.00 0.00 0.00 3.06
6997 8357 8.328758 TCCTCTGTTCCATAATGTAAGATGTTT 58.671 33.333 0.00 0.00 0.00 2.83
6998 8358 8.960591 CCTCTGTTCCATAATGTAAGATGTTTT 58.039 33.333 0.00 0.00 0.00 2.43
7062 8431 8.239478 TGGGACAGAGGAAGTAATATATTACCT 58.761 37.037 25.36 18.28 42.71 3.08
7063 8432 9.102453 GGGACAGAGGAAGTAATATATTACCTT 57.898 37.037 25.36 19.54 42.71 3.50
7065 8434 9.843334 GACAGAGGAAGTAATATATTACCTTCG 57.157 37.037 25.36 17.44 42.71 3.79
7066 8435 9.364653 ACAGAGGAAGTAATATATTACCTTCGT 57.635 33.333 25.36 24.64 42.71 3.85
7067 8436 9.843334 CAGAGGAAGTAATATATTACCTTCGTC 57.157 37.037 30.04 30.04 42.71 4.20
7068 8437 9.022884 AGAGGAAGTAATATATTACCTTCGTCC 57.977 37.037 31.28 26.26 42.71 4.79
7069 8438 7.824672 AGGAAGTAATATATTACCTTCGTCCG 58.175 38.462 25.36 0.00 42.71 4.79
7070 8439 7.031975 GGAAGTAATATATTACCTTCGTCCGG 58.968 42.308 25.36 0.00 42.71 5.14
7071 8440 7.094205 GGAAGTAATATATTACCTTCGTCCGGA 60.094 40.741 25.36 0.00 42.71 5.14
7072 8441 7.765695 AGTAATATATTACCTTCGTCCGGAA 57.234 36.000 25.36 0.00 42.71 4.30
7073 8442 8.358582 AGTAATATATTACCTTCGTCCGGAAT 57.641 34.615 25.36 0.00 42.71 3.01
7074 8443 9.466497 AGTAATATATTACCTTCGTCCGGAATA 57.534 33.333 25.36 0.00 42.71 1.75
7077 8446 4.950205 ATTACCTTCGTCCGGAATATGT 57.050 40.909 5.23 2.66 33.26 2.29
7078 8447 4.741321 TTACCTTCGTCCGGAATATGTT 57.259 40.909 5.23 0.00 33.26 2.71
7079 8448 3.622166 ACCTTCGTCCGGAATATGTTT 57.378 42.857 5.23 0.00 33.26 2.83
7080 8449 3.946606 ACCTTCGTCCGGAATATGTTTT 58.053 40.909 5.23 0.00 33.26 2.43
7081 8450 5.088680 ACCTTCGTCCGGAATATGTTTTA 57.911 39.130 5.23 0.00 33.26 1.52
7082 8451 4.872124 ACCTTCGTCCGGAATATGTTTTAC 59.128 41.667 5.23 0.00 33.26 2.01
7083 8452 4.871557 CCTTCGTCCGGAATATGTTTTACA 59.128 41.667 5.23 0.00 33.26 2.41
7084 8453 5.526111 CCTTCGTCCGGAATATGTTTTACAT 59.474 40.000 5.23 0.00 42.35 2.29
7085 8454 6.292703 CCTTCGTCCGGAATATGTTTTACATC 60.293 42.308 5.23 0.00 39.88 3.06
7086 8455 5.909477 TCGTCCGGAATATGTTTTACATCT 58.091 37.500 5.23 0.00 39.88 2.90
7087 8456 5.751509 TCGTCCGGAATATGTTTTACATCTG 59.248 40.000 5.23 0.00 39.88 2.90
7088 8457 5.522460 CGTCCGGAATATGTTTTACATCTGT 59.478 40.000 5.23 0.00 39.88 3.41
7089 8458 6.698329 CGTCCGGAATATGTTTTACATCTGTA 59.302 38.462 5.23 0.00 39.88 2.74
7090 8459 7.384115 CGTCCGGAATATGTTTTACATCTGTAT 59.616 37.037 5.23 0.00 39.88 2.29
7091 8460 8.709646 GTCCGGAATATGTTTTACATCTGTATC 58.290 37.037 5.23 0.00 39.88 2.24
7092 8461 8.647796 TCCGGAATATGTTTTACATCTGTATCT 58.352 33.333 0.00 0.00 39.88 1.98
7093 8462 9.923143 CCGGAATATGTTTTACATCTGTATCTA 57.077 33.333 0.00 0.00 39.88 1.98
7125 8494 8.759782 TCTAAGTCAACTAATTTAGGAAGGAGG 58.240 37.037 8.26 0.00 0.00 4.30
7126 8495 6.314899 AGTCAACTAATTTAGGAAGGAGGG 57.685 41.667 8.26 0.00 0.00 4.30
7127 8496 6.030082 AGTCAACTAATTTAGGAAGGAGGGA 58.970 40.000 8.26 0.00 0.00 4.20
7128 8497 6.157123 AGTCAACTAATTTAGGAAGGAGGGAG 59.843 42.308 8.26 0.00 0.00 4.30
7129 8498 5.428783 TCAACTAATTTAGGAAGGAGGGAGG 59.571 44.000 8.26 0.00 0.00 4.30
7130 8499 5.236425 ACTAATTTAGGAAGGAGGGAGGA 57.764 43.478 8.26 0.00 0.00 3.71
7131 8500 5.220521 ACTAATTTAGGAAGGAGGGAGGAG 58.779 45.833 8.26 0.00 0.00 3.69
7152 8521 6.553100 AGGAGTATTATTCAGTAGCTTGCTCT 59.447 38.462 0.00 0.00 0.00 4.09
7153 8522 7.726291 AGGAGTATTATTCAGTAGCTTGCTCTA 59.274 37.037 0.00 0.00 0.00 2.43
7166 8535 6.917217 AGCTTGCTCTATGAAATTGTCTAC 57.083 37.500 0.00 0.00 0.00 2.59
7188 8557 0.749454 ATGGCTGCCGATTCAACTCC 60.749 55.000 14.98 0.00 0.00 3.85
7189 8558 2.115291 GGCTGCCGATTCAACTCCC 61.115 63.158 1.35 0.00 0.00 4.30
7191 8560 1.218047 CTGCCGATTCAACTCCCGA 59.782 57.895 0.00 0.00 0.00 5.14
7204 8573 0.323629 CTCCCGACTGGCCTACAAAA 59.676 55.000 3.32 0.00 0.00 2.44
7205 8574 0.035739 TCCCGACTGGCCTACAAAAC 59.964 55.000 3.32 0.00 0.00 2.43
7207 8576 1.156736 CCGACTGGCCTACAAAACAG 58.843 55.000 3.32 0.00 37.01 3.16
7280 8651 4.882842 AAACTTGGTGGTGTTCTTTGTT 57.117 36.364 0.00 0.00 0.00 2.83
7310 8681 2.097038 CGCAGAAACAGAGGGAGCG 61.097 63.158 0.00 0.00 37.68 5.03
7311 8682 1.743252 GCAGAAACAGAGGGAGCGG 60.743 63.158 0.00 0.00 0.00 5.52
7412 8800 3.261216 CGCGATGTGCACGGCATA 61.261 61.111 21.92 2.48 46.97 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 2.247437 GCACGTATAGCTGCCTGGC 61.247 63.158 12.87 12.87 0.00 4.85
77 79 2.191354 TAAGCAGACCGTCACCGTCG 62.191 60.000 0.40 0.00 0.00 5.12
103 105 0.748005 AATGGCGAGGACGAATTGGG 60.748 55.000 0.00 0.00 42.66 4.12
142 144 0.533491 CGAGGGGGATAACGTTGACA 59.467 55.000 11.99 0.00 0.00 3.58
189 191 1.400846 TCGAATACGCACTGAGGAGAC 59.599 52.381 0.00 0.00 39.58 3.36
194 199 2.561733 TCCTTCGAATACGCACTGAG 57.438 50.000 0.00 0.00 39.58 3.35
197 202 1.134788 CCCTTCCTTCGAATACGCACT 60.135 52.381 0.00 0.00 39.58 4.40
280 285 1.153647 CGTGCCTGATAAGGTCGCA 60.154 57.895 0.00 0.00 0.00 5.10
286 291 3.272334 GCGGGCGTGCCTGATAAG 61.272 66.667 23.61 3.69 45.10 1.73
324 329 4.210120 GTGTGCGTATTCATCTTCATCTCC 59.790 45.833 0.00 0.00 0.00 3.71
325 330 4.805719 TGTGTGCGTATTCATCTTCATCTC 59.194 41.667 0.00 0.00 0.00 2.75
338 343 1.604604 AAGGCAAACTGTGTGCGTAT 58.395 45.000 17.57 3.61 43.18 3.06
367 372 9.453572 TCTTATATTACGTGACGGATAAGGTAT 57.546 33.333 20.47 4.01 31.00 2.73
373 378 5.409520 ACGCTCTTATATTACGTGACGGATA 59.590 40.000 10.66 7.83 35.33 2.59
383 388 7.447243 AGTGTCGAAAACGCTCTTATATTAC 57.553 36.000 0.00 0.00 45.69 1.89
423 428 4.367023 TGTCCCTACGCCGCACAC 62.367 66.667 0.00 0.00 0.00 3.82
495 501 6.322201 CCCCATGCTTAGTTTATCTGACAATT 59.678 38.462 0.00 0.00 0.00 2.32
496 502 5.829924 CCCCATGCTTAGTTTATCTGACAAT 59.170 40.000 0.00 0.00 0.00 2.71
497 503 5.192927 CCCCATGCTTAGTTTATCTGACAA 58.807 41.667 0.00 0.00 0.00 3.18
547 554 1.731709 TGGATCGTGAAAGTTCATGCG 59.268 47.619 8.16 3.58 42.51 4.73
548 555 4.550831 CGTATGGATCGTGAAAGTTCATGC 60.551 45.833 8.16 0.00 42.51 4.06
549 556 4.025730 CCGTATGGATCGTGAAAGTTCATG 60.026 45.833 6.88 6.88 40.45 3.07
550 557 4.119862 CCGTATGGATCGTGAAAGTTCAT 58.880 43.478 0.00 0.00 37.14 2.57
566 577 3.252400 TGGTACACGTTAAAGCCGTATG 58.748 45.455 0.00 0.00 36.65 2.39
608 619 1.137479 CGGTGGATCGGCTTAACCTTA 59.863 52.381 0.00 0.00 35.61 2.69
610 621 1.520666 CGGTGGATCGGCTTAACCT 59.479 57.895 0.00 0.00 35.61 3.50
722 775 1.743394 GGGGTTTGCTAATTCAGACGG 59.257 52.381 0.00 0.00 0.00 4.79
820 875 2.408050 TCTGCTTTCGAGTTGCTTCTC 58.592 47.619 7.63 0.00 0.00 2.87
832 887 1.407618 TGCATGCATCCATCTGCTTTC 59.592 47.619 18.46 0.00 42.75 2.62
880 935 4.691216 TGCTTGCGTATGTATTGTGTACAA 59.309 37.500 0.00 0.00 40.51 2.41
883 938 4.500127 AGTGCTTGCGTATGTATTGTGTA 58.500 39.130 0.00 0.00 0.00 2.90
889 944 7.590322 GCGTATATATAGTGCTTGCGTATGTAT 59.410 37.037 8.86 8.18 0.00 2.29
894 949 4.336932 CGCGTATATATAGTGCTTGCGTA 58.663 43.478 0.00 0.00 38.39 4.42
906 961 3.003068 GGACGGTCTATGCGCGTATATAT 59.997 47.826 17.33 1.93 0.00 0.86
907 962 2.352651 GGACGGTCTATGCGCGTATATA 59.647 50.000 17.33 7.77 0.00 0.86
908 963 1.131883 GGACGGTCTATGCGCGTATAT 59.868 52.381 17.33 7.55 0.00 0.86
909 964 0.518636 GGACGGTCTATGCGCGTATA 59.481 55.000 16.16 16.16 0.00 1.47
910 965 1.285023 GGACGGTCTATGCGCGTAT 59.715 57.895 15.52 15.52 0.00 3.06
911 966 2.717485 GGACGGTCTATGCGCGTA 59.283 61.111 8.43 9.38 0.00 4.42
912 967 4.203076 GGGACGGTCTATGCGCGT 62.203 66.667 8.43 7.55 0.00 6.01
913 968 4.944372 GGGGACGGTCTATGCGCG 62.944 72.222 0.00 0.00 0.00 6.86
914 969 1.533469 ATAGGGGACGGTCTATGCGC 61.533 60.000 8.23 0.00 0.00 6.09
915 970 0.243907 CATAGGGGACGGTCTATGCG 59.756 60.000 8.23 0.00 37.22 4.73
917 972 2.030185 CGTTCATAGGGGACGGTCTATG 60.030 54.545 8.23 8.53 42.33 2.23
918 973 2.236766 CGTTCATAGGGGACGGTCTAT 58.763 52.381 8.23 0.00 33.45 1.98
919 974 1.683943 CGTTCATAGGGGACGGTCTA 58.316 55.000 8.23 0.00 33.45 2.59
920 975 1.673808 GCGTTCATAGGGGACGGTCT 61.674 60.000 8.23 0.00 37.28 3.85
921 976 1.227176 GCGTTCATAGGGGACGGTC 60.227 63.158 0.00 0.00 37.28 4.79
922 977 1.985662 TGCGTTCATAGGGGACGGT 60.986 57.895 6.41 0.00 37.28 4.83
923 978 1.520787 GTGCGTTCATAGGGGACGG 60.521 63.158 6.41 0.00 37.28 4.79
925 980 1.084289 GTTGTGCGTTCATAGGGGAC 58.916 55.000 0.00 0.00 0.00 4.46
926 981 0.390603 CGTTGTGCGTTCATAGGGGA 60.391 55.000 0.00 0.00 35.54 4.81
927 982 1.977594 GCGTTGTGCGTTCATAGGGG 61.978 60.000 0.00 0.00 43.66 4.79
928 983 1.423845 GCGTTGTGCGTTCATAGGG 59.576 57.895 0.00 0.00 43.66 3.53
938 993 1.086696 AGGATGTGTATGCGTTGTGC 58.913 50.000 0.00 0.00 46.70 4.57
939 994 3.182372 CGATAGGATGTGTATGCGTTGTG 59.818 47.826 0.00 0.00 0.00 3.33
940 995 3.381045 CGATAGGATGTGTATGCGTTGT 58.619 45.455 0.00 0.00 0.00 3.32
941 996 2.155732 GCGATAGGATGTGTATGCGTTG 59.844 50.000 0.00 0.00 0.00 4.10
942 997 2.035961 AGCGATAGGATGTGTATGCGTT 59.964 45.455 0.00 0.00 0.00 4.84
943 998 1.613925 AGCGATAGGATGTGTATGCGT 59.386 47.619 0.00 0.00 0.00 5.24
944 999 1.988467 CAGCGATAGGATGTGTATGCG 59.012 52.381 0.00 0.00 0.00 4.73
945 1000 3.032017 ACAGCGATAGGATGTGTATGC 57.968 47.619 0.00 0.00 45.13 3.14
952 1007 1.202452 TGTGCTCACAGCGATAGGATG 60.202 52.381 0.00 0.00 46.26 3.51
953 1008 1.114627 TGTGCTCACAGCGATAGGAT 58.885 50.000 0.00 0.00 46.26 3.24
954 1009 1.067669 GATGTGCTCACAGCGATAGGA 59.932 52.381 8.74 0.00 46.26 2.94
955 1010 1.495878 GATGTGCTCACAGCGATAGG 58.504 55.000 8.74 0.00 46.26 2.57
961 1016 0.805322 CTCTCGGATGTGCTCACAGC 60.805 60.000 9.54 9.54 45.48 4.40
962 1017 0.813821 TCTCTCGGATGTGCTCACAG 59.186 55.000 8.74 0.00 45.48 3.66
963 1018 0.528017 GTCTCTCGGATGTGCTCACA 59.472 55.000 5.08 5.08 46.44 3.58
964 1019 0.528017 TGTCTCTCGGATGTGCTCAC 59.472 55.000 0.00 0.00 0.00 3.51
972 1027 1.347707 TGCTGGTTTTGTCTCTCGGAT 59.652 47.619 0.00 0.00 0.00 4.18
976 1031 3.674997 TGGTATGCTGGTTTTGTCTCTC 58.325 45.455 0.00 0.00 0.00 3.20
983 1038 3.382546 GCTCATGATGGTATGCTGGTTTT 59.617 43.478 0.00 0.00 0.00 2.43
984 1039 2.954318 GCTCATGATGGTATGCTGGTTT 59.046 45.455 0.00 0.00 0.00 3.27
990 1045 5.756195 TGTAAAAGCTCATGATGGTATGC 57.244 39.130 0.00 0.00 0.00 3.14
1005 1060 4.724036 GCGCCTACGATGTCTTTGTAAAAG 60.724 45.833 0.00 0.00 43.93 2.27
1012 1067 0.179108 GAGGCGCCTACGATGTCTTT 60.179 55.000 32.97 1.35 43.93 2.52
1047 1102 0.179100 CGCGTTGAGTGGGATGAGAT 60.179 55.000 0.00 0.00 0.00 2.75
1052 1107 1.599518 TTTGCGCGTTGAGTGGGAT 60.600 52.632 8.43 0.00 0.00 3.85
1080 1144 4.696455 GAATGGGCATTTAACCTGGATTG 58.304 43.478 0.00 0.00 0.00 2.67
1120 1184 6.832384 GGAATAAAACTCTTTTACCCTAGGGG 59.168 42.308 31.70 13.60 40.33 4.79
1121 1185 7.407729 TGGAATAAAACTCTTTTACCCTAGGG 58.592 38.462 27.36 27.36 37.88 3.53
1167 1234 2.094286 GGGTGGAGCTGATCGATATGAG 60.094 54.545 0.00 0.00 0.00 2.90
1184 1251 5.596772 TCTTTTACTTGAAGAAAAGGGGGTG 59.403 40.000 19.75 5.10 41.15 4.61
1185 1252 5.773091 TCTTTTACTTGAAGAAAAGGGGGT 58.227 37.500 19.75 0.00 41.15 4.95
1187 1254 6.961360 ACTCTTTTACTTGAAGAAAAGGGG 57.039 37.500 22.04 17.66 44.18 4.79
1217 1286 5.884322 AGGGCTGCAATTCTATTCATATGA 58.116 37.500 0.00 0.00 0.00 2.15
1230 1299 2.158505 AGCTGATCAATAGGGCTGCAAT 60.159 45.455 5.66 0.00 31.68 3.56
1233 1302 1.521580 GAGCTGATCAATAGGGCTGC 58.478 55.000 10.81 1.39 33.13 5.25
1237 1306 2.566724 GGAGAGGAGCTGATCAATAGGG 59.433 54.545 0.00 0.00 0.00 3.53
1269 1338 3.003480 GCTAGCTAGGCATAATTTCGGG 58.997 50.000 22.10 0.00 0.00 5.14
1278 1347 1.414061 CCCACCAGCTAGCTAGGCAT 61.414 60.000 24.56 10.36 0.00 4.40
1279 1348 2.066393 CCCACCAGCTAGCTAGGCA 61.066 63.158 24.56 0.00 0.00 4.75
1379 1572 2.048127 GACTCGGTCACCACTGCC 60.048 66.667 0.00 0.00 32.09 4.85
1401 1594 8.616076 CAATTAACTAGCTAATCTTTCACCCAG 58.384 37.037 0.00 0.00 0.00 4.45
1443 1636 3.496130 ACGACAAGTCAAGAATCAAGCTG 59.504 43.478 0.72 0.00 0.00 4.24
1496 1689 9.847706 CGAGTATGATTGATTAACTAGTATGCT 57.152 33.333 0.00 0.00 0.00 3.79
1497 1690 9.077674 CCGAGTATGATTGATTAACTAGTATGC 57.922 37.037 0.00 0.00 0.00 3.14
1501 1694 9.078990 TGATCCGAGTATGATTGATTAACTAGT 57.921 33.333 0.00 0.00 0.00 2.57
1502 1695 9.347934 GTGATCCGAGTATGATTGATTAACTAG 57.652 37.037 0.00 0.00 0.00 2.57
1503 1696 8.021396 CGTGATCCGAGTATGATTGATTAACTA 58.979 37.037 0.00 0.00 39.56 2.24
1508 1701 4.560128 CCGTGATCCGAGTATGATTGATT 58.440 43.478 5.32 0.00 39.56 2.57
1511 1704 2.061773 GCCGTGATCCGAGTATGATTG 58.938 52.381 5.32 0.00 39.56 2.67
1571 1797 7.962918 CAGGAAATATTTAAAGTGGACAAGTCG 59.037 37.037 0.00 0.00 0.00 4.18
1619 1848 1.475930 GCAGCTTGTCCCTATTCTCCC 60.476 57.143 0.00 0.00 0.00 4.30
1666 1899 1.690985 CCACCTTCCCTCTCCCTCC 60.691 68.421 0.00 0.00 0.00 4.30
1670 1903 0.030603 ATCCTCCACCTTCCCTCTCC 60.031 60.000 0.00 0.00 0.00 3.71
1676 1909 5.602978 TCAGTAATCTAATCCTCCACCTTCC 59.397 44.000 0.00 0.00 0.00 3.46
1678 1911 6.846505 TCATCAGTAATCTAATCCTCCACCTT 59.153 38.462 0.00 0.00 0.00 3.50
1682 1915 6.723515 CCTCTCATCAGTAATCTAATCCTCCA 59.276 42.308 0.00 0.00 0.00 3.86
1683 1916 6.951198 TCCTCTCATCAGTAATCTAATCCTCC 59.049 42.308 0.00 0.00 0.00 4.30
1684 1917 8.415950 TTCCTCTCATCAGTAATCTAATCCTC 57.584 38.462 0.00 0.00 0.00 3.71
1685 1918 8.231007 TCTTCCTCTCATCAGTAATCTAATCCT 58.769 37.037 0.00 0.00 0.00 3.24
1686 1919 8.415950 TCTTCCTCTCATCAGTAATCTAATCC 57.584 38.462 0.00 0.00 0.00 3.01
1687 1920 9.295825 TCTCTTCCTCTCATCAGTAATCTAATC 57.704 37.037 0.00 0.00 0.00 1.75
1699 1932 4.281688 CCTTCCATCTCTCTTCCTCTCATC 59.718 50.000 0.00 0.00 0.00 2.92
1723 1956 2.910977 TCTTTAGTTCTTCACCCTCCCC 59.089 50.000 0.00 0.00 0.00 4.81
1732 1965 7.905493 CGTCTTATTTGCCATCTTTAGTTCTTC 59.095 37.037 0.00 0.00 0.00 2.87
1817 2050 2.521105 GATGCATTTCCATCTTGGGC 57.479 50.000 0.00 0.00 38.32 5.36
1885 2119 9.880157 TTAAAAGACTAGGTACATGATGTAACC 57.120 33.333 16.49 14.49 41.33 2.85
1906 2142 2.591144 ACGCGGCCGGTGTTAAAA 60.591 55.556 29.38 0.00 35.33 1.52
1941 2181 2.095372 GGTTCGTCCGCTTGGATAAAAG 59.905 50.000 0.00 0.00 45.53 2.27
1944 2184 3.446507 GGTTCGTCCGCTTGGATAA 57.553 52.632 0.00 0.00 45.53 1.75
1955 2195 2.171725 GGGTGCTATGCGGTTCGTC 61.172 63.158 0.00 0.00 0.00 4.20
1963 2203 3.181487 CCATTTGTTACAGGGTGCTATGC 60.181 47.826 0.00 0.00 0.00 3.14
1968 2208 2.514803 AGACCATTTGTTACAGGGTGC 58.485 47.619 9.53 3.51 30.55 5.01
2031 2271 0.038618 TTGCACGCGATGTCAGTAGT 60.039 50.000 15.93 0.00 0.00 2.73
2045 2285 1.669211 GGAGACGACTACCACTTGCAC 60.669 57.143 0.00 0.00 0.00 4.57
2081 2321 9.737427 TTTTGCGAAAAATATGTTTCTTAGTCA 57.263 25.926 14.96 4.26 35.70 3.41
2106 2346 6.357367 ACACACATGTCTCTTAGTCCTTTTT 58.643 36.000 0.00 0.00 31.55 1.94
2107 2347 5.930135 ACACACATGTCTCTTAGTCCTTTT 58.070 37.500 0.00 0.00 31.55 2.27
2108 2348 5.552870 ACACACATGTCTCTTAGTCCTTT 57.447 39.130 0.00 0.00 31.55 3.11
2109 2349 5.552870 AACACACATGTCTCTTAGTCCTT 57.447 39.130 0.00 0.00 38.45 3.36
2110 2350 5.775701 ACTAACACACATGTCTCTTAGTCCT 59.224 40.000 0.00 0.00 38.45 3.85
2111 2351 5.864474 CACTAACACACATGTCTCTTAGTCC 59.136 44.000 12.56 0.00 38.45 3.85
2112 2352 5.346281 GCACTAACACACATGTCTCTTAGTC 59.654 44.000 12.56 7.25 38.45 2.59
2113 2353 5.221441 TGCACTAACACACATGTCTCTTAGT 60.221 40.000 0.00 4.21 38.45 2.24
2114 2354 5.230182 TGCACTAACACACATGTCTCTTAG 58.770 41.667 0.00 3.57 38.45 2.18
2115 2355 5.208463 TGCACTAACACACATGTCTCTTA 57.792 39.130 0.00 0.00 38.45 2.10
2116 2356 4.071961 TGCACTAACACACATGTCTCTT 57.928 40.909 0.00 0.00 38.45 2.85
2117 2357 3.751479 TGCACTAACACACATGTCTCT 57.249 42.857 0.00 0.00 38.45 3.10
2118 2358 3.996363 TCATGCACTAACACACATGTCTC 59.004 43.478 0.00 0.00 38.45 3.36
2119 2359 4.006780 TCATGCACTAACACACATGTCT 57.993 40.909 0.00 0.00 38.45 3.41
2120 2360 4.392754 TCATCATGCACTAACACACATGTC 59.607 41.667 0.00 0.00 38.45 3.06
2121 2361 4.325972 TCATCATGCACTAACACACATGT 58.674 39.130 0.00 0.00 42.46 3.21
2122 2362 4.950434 TCATCATGCACTAACACACATG 57.050 40.909 0.00 0.00 40.97 3.21
2123 2363 5.416639 ACAATCATCATGCACTAACACACAT 59.583 36.000 0.00 0.00 0.00 3.21
2124 2364 4.761227 ACAATCATCATGCACTAACACACA 59.239 37.500 0.00 0.00 0.00 3.72
2125 2365 5.300969 ACAATCATCATGCACTAACACAC 57.699 39.130 0.00 0.00 0.00 3.82
2126 2366 5.963176 AACAATCATCATGCACTAACACA 57.037 34.783 0.00 0.00 0.00 3.72
2127 2367 6.380995 TCAAACAATCATCATGCACTAACAC 58.619 36.000 0.00 0.00 0.00 3.32
2128 2368 6.572167 TCAAACAATCATCATGCACTAACA 57.428 33.333 0.00 0.00 0.00 2.41
2129 2369 7.872163 TTTCAAACAATCATCATGCACTAAC 57.128 32.000 0.00 0.00 0.00 2.34
2164 2408 8.154203 TCACAAAATTCCTAGTGTAATCTGTCA 58.846 33.333 0.00 0.00 33.84 3.58
2174 2418 3.334691 TCCGCTCACAAAATTCCTAGTG 58.665 45.455 0.00 0.00 0.00 2.74
2229 2473 8.181573 TCCTCGTGAACATTAGCAAAATTATTC 58.818 33.333 0.00 0.00 0.00 1.75
2250 2494 4.925054 ACAAATGCATGTTGATTTTCCTCG 59.075 37.500 20.96 0.00 0.00 4.63
2277 2528 8.240682 TGAAAATTACATACATCCAAAAGGACG 58.759 33.333 0.00 0.00 0.00 4.79
2317 2573 7.589587 TGATAAGTTTGTTTTTAGCACATGTCG 59.410 33.333 0.00 0.00 0.00 4.35
2362 2620 5.559427 AACAAAACAAAATTTGGTGCTCC 57.441 34.783 10.71 0.00 43.10 4.70
2468 3586 6.211184 TCCCGGATAAACAGTAAAACAGTAGA 59.789 38.462 0.73 0.00 0.00 2.59
2469 3587 6.400568 TCCCGGATAAACAGTAAAACAGTAG 58.599 40.000 0.73 0.00 0.00 2.57
2474 3592 3.376234 GGCTCCCGGATAAACAGTAAAAC 59.624 47.826 0.73 0.00 0.00 2.43
2523 3662 5.728471 AGCATACTCAAGCATAGCGAATAT 58.272 37.500 0.00 0.00 0.00 1.28
2557 3696 7.308450 AGTGGTGACTCATACATAGCATAAT 57.692 36.000 0.00 0.00 0.00 1.28
2559 3698 6.731292 AAGTGGTGACTCATACATAGCATA 57.269 37.500 0.00 0.00 0.00 3.14
2560 3699 5.620738 AAGTGGTGACTCATACATAGCAT 57.379 39.130 0.00 0.00 0.00 3.79
2561 3700 5.420725 AAAGTGGTGACTCATACATAGCA 57.579 39.130 0.00 0.00 0.00 3.49
2562 3701 6.743575 AAAAAGTGGTGACTCATACATAGC 57.256 37.500 0.00 0.00 0.00 2.97
2586 3727 8.133024 AGCATAAAAGGTGGAAATTGTGATAA 57.867 30.769 0.00 0.00 0.00 1.75
2587 3728 7.615365 AGAGCATAAAAGGTGGAAATTGTGATA 59.385 33.333 0.00 0.00 0.00 2.15
2588 3729 6.438425 AGAGCATAAAAGGTGGAAATTGTGAT 59.562 34.615 0.00 0.00 0.00 3.06
2589 3730 5.774690 AGAGCATAAAAGGTGGAAATTGTGA 59.225 36.000 0.00 0.00 0.00 3.58
2590 3731 6.029346 AGAGCATAAAAGGTGGAAATTGTG 57.971 37.500 0.00 0.00 0.00 3.33
2591 3732 7.631377 GCATAGAGCATAAAAGGTGGAAATTGT 60.631 37.037 0.00 0.00 44.79 2.71
2592 3733 6.698766 GCATAGAGCATAAAAGGTGGAAATTG 59.301 38.462 0.00 0.00 44.79 2.32
2612 3753 8.029522 TCTTCTACAAGACTTAGTTGTGCATAG 58.970 37.037 0.00 0.00 38.58 2.23
2685 3826 2.746904 CGGATCCATATTAATTGCCGCA 59.253 45.455 13.41 0.00 0.00 5.69
2689 3830 4.843728 TCCCTCGGATCCATATTAATTGC 58.156 43.478 13.41 0.00 0.00 3.56
2704 3845 7.815068 CACAAATATACTATTCTTCTCCCTCGG 59.185 40.741 0.00 0.00 0.00 4.63
2705 3846 8.361139 ACACAAATATACTATTCTTCTCCCTCG 58.639 37.037 0.00 0.00 0.00 4.63
2718 3859 9.550406 GGGCACAAATAGTACACAAATATACTA 57.450 33.333 0.00 0.00 38.07 1.82
2719 3860 8.050325 TGGGCACAAATAGTACACAAATATACT 58.950 33.333 0.00 0.00 35.76 2.12
2720 3861 8.215926 TGGGCACAAATAGTACACAAATATAC 57.784 34.615 0.00 0.00 0.00 1.47
2728 3869 5.385509 AATGTTGGGCACAAATAGTACAC 57.614 39.130 1.02 0.00 39.50 2.90
2733 3874 7.378181 AGTAGAAAAATGTTGGGCACAAATAG 58.622 34.615 1.02 0.00 39.50 1.73
2736 3877 5.606348 AGTAGAAAAATGTTGGGCACAAA 57.394 34.783 1.02 0.00 39.50 2.83
2998 4149 2.684104 CGAGGGAGTGGGGAGAGA 59.316 66.667 0.00 0.00 0.00 3.10
2999 4150 3.151022 GCGAGGGAGTGGGGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
3048 4214 2.092158 GGAGAATTTTCAGGGAGGGAGG 60.092 54.545 0.00 0.00 0.00 4.30
3114 4280 1.436195 CTCTCTGTCCCTCTCTCGCG 61.436 65.000 0.00 0.00 0.00 5.87
3116 4282 1.484653 TCTCTCTCTGTCCCTCTCTCG 59.515 57.143 0.00 0.00 0.00 4.04
3138 4304 1.388531 GGAGTGGAGACAGGGGAGA 59.611 63.158 0.00 0.00 44.46 3.71
3282 4464 0.253044 CCCGGAATTCTGCAGGAAGA 59.747 55.000 15.13 0.00 37.36 2.87
3283 4465 0.035056 ACCCGGAATTCTGCAGGAAG 60.035 55.000 15.13 0.00 37.36 3.46
3632 4820 5.330455 GGAATCACTTCCTTCCCAAATTC 57.670 43.478 0.00 0.00 46.44 2.17
3687 4875 4.685924 AGCAAGCATGTATTTATTGTGCC 58.314 39.130 0.00 0.00 36.50 5.01
3719 4907 7.691463 CGATCAAGAGAGCAAACATTTTTAGAG 59.309 37.037 0.00 0.00 0.00 2.43
3728 4916 1.002430 AGCCGATCAAGAGAGCAAACA 59.998 47.619 0.00 0.00 0.00 2.83
3752 4940 4.725280 CGAATTATGCAATCAGACAACACG 59.275 41.667 0.00 0.00 0.00 4.49
3840 5028 7.488150 TGTTAGATTACGAATTGAGCACTACTG 59.512 37.037 0.00 0.00 0.00 2.74
3847 5035 9.774742 AGAAAATTGTTAGATTACGAATTGAGC 57.225 29.630 0.00 0.00 0.00 4.26
3895 5083 0.108520 TCCGTCGTGCCCTGAATTAC 60.109 55.000 0.00 0.00 0.00 1.89
4560 5754 5.164954 AGTTAGTCTTTCATCGAGAGCAAC 58.835 41.667 0.00 0.00 0.00 4.17
4612 5806 6.645003 CCAACTTAAAGCCCAAGTTTGATTAC 59.355 38.462 5.45 0.00 42.18 1.89
4664 5942 4.211164 GGCCAATTTGCTTTCAGTAACAAC 59.789 41.667 0.00 0.00 0.00 3.32
4830 6111 4.442706 ACACTACTTGGTCACACTGAAAG 58.557 43.478 0.00 0.00 42.29 2.62
4905 6190 8.485976 AGATAGAAAAACTGACTGAATACTGC 57.514 34.615 0.00 0.00 0.00 4.40
4995 6289 8.021898 ACATGATAACCTATTTTTCAATGGGG 57.978 34.615 0.00 0.00 43.84 4.96
4996 6290 9.965824 GTACATGATAACCTATTTTTCAATGGG 57.034 33.333 0.00 0.00 44.84 4.00
5062 6366 7.663043 AATAACAAGTTAACAAGTGGGGAAA 57.337 32.000 8.61 0.00 0.00 3.13
5102 6406 1.902508 CCTGGCAACTGAGAAGAGGTA 59.097 52.381 0.00 0.00 37.83 3.08
5585 6889 0.686789 TGCTGCTAGAGTTGGCTTCA 59.313 50.000 0.00 0.00 0.00 3.02
5609 6913 1.480545 GTACCCCCAAATGGTGCAATC 59.519 52.381 0.00 0.00 38.26 2.67
5902 7212 2.241685 AGCTGCTGATTCTTCCCAGATT 59.758 45.455 0.00 0.00 32.37 2.40
5933 7243 4.762289 ACTGACAGAGGAACTTGAACTT 57.238 40.909 10.08 0.00 41.55 2.66
5994 7304 4.624913 TCTTCCCAATAGTCCTGACAGAT 58.375 43.478 3.32 0.00 0.00 2.90
6087 7400 0.883833 AGCTGAAAAACATCAGGCGG 59.116 50.000 6.46 0.00 45.60 6.13
6193 7509 3.367703 GCTTTGTGCTGCAAATACAGGAT 60.368 43.478 2.77 0.00 45.00 3.24
6195 7511 2.331194 GCTTTGTGCTGCAAATACAGG 58.669 47.619 2.77 0.00 45.00 4.00
6196 7512 2.331194 GGCTTTGTGCTGCAAATACAG 58.669 47.619 2.77 0.00 45.00 2.74
6556 7872 4.437239 TCGATGAGGCTTTCTCTGAATTC 58.563 43.478 0.00 0.00 42.86 2.17
6616 7934 1.597854 GTAGCAGCCGCATATGCCA 60.598 57.895 21.77 0.00 43.60 4.92
6620 7938 0.979665 ATCTGGTAGCAGCCGCATAT 59.020 50.000 17.20 1.45 42.27 1.78
6626 7944 0.813210 GAGCACATCTGGTAGCAGCC 60.813 60.000 17.20 3.18 0.00 4.85
6639 7957 2.703416 CTTAGTTGCATGGAGAGCACA 58.297 47.619 0.00 0.00 42.54 4.57
6794 8113 3.074675 AGAGAGAGTACGCCAGAAGAA 57.925 47.619 0.00 0.00 0.00 2.52
6795 8114 2.750166 CAAGAGAGAGTACGCCAGAAGA 59.250 50.000 0.00 0.00 0.00 2.87
6796 8115 2.733858 GCAAGAGAGAGTACGCCAGAAG 60.734 54.545 0.00 0.00 0.00 2.85
6831 8152 4.635324 TGCTGCTATCGATTGACAATTTGA 59.365 37.500 11.17 4.49 0.00 2.69
6898 8220 7.254932 GCAAGCTGAAAAGAAGAAGAAGAAGTA 60.255 37.037 0.00 0.00 0.00 2.24
6899 8221 6.459435 GCAAGCTGAAAAGAAGAAGAAGAAGT 60.459 38.462 0.00 0.00 0.00 3.01
6900 8222 5.914074 GCAAGCTGAAAAGAAGAAGAAGAAG 59.086 40.000 0.00 0.00 0.00 2.85
6901 8223 5.591877 AGCAAGCTGAAAAGAAGAAGAAGAA 59.408 36.000 0.00 0.00 0.00 2.52
6902 8224 5.128919 AGCAAGCTGAAAAGAAGAAGAAGA 58.871 37.500 0.00 0.00 0.00 2.87
6903 8225 5.239087 AGAGCAAGCTGAAAAGAAGAAGAAG 59.761 40.000 0.00 0.00 0.00 2.85
6904 8226 5.008415 CAGAGCAAGCTGAAAAGAAGAAGAA 59.992 40.000 0.00 0.00 38.14 2.52
6905 8227 4.514441 CAGAGCAAGCTGAAAAGAAGAAGA 59.486 41.667 0.00 0.00 38.14 2.87
6906 8228 4.275443 ACAGAGCAAGCTGAAAAGAAGAAG 59.725 41.667 0.00 0.00 39.20 2.85
6907 8229 4.202441 ACAGAGCAAGCTGAAAAGAAGAA 58.798 39.130 0.00 0.00 39.20 2.52
6908 8230 3.813443 ACAGAGCAAGCTGAAAAGAAGA 58.187 40.909 0.00 0.00 39.20 2.87
6909 8231 5.679734 TTACAGAGCAAGCTGAAAAGAAG 57.320 39.130 0.00 0.00 39.20 2.85
6912 8234 5.429957 AGTTTACAGAGCAAGCTGAAAAG 57.570 39.130 0.00 0.00 39.20 2.27
6924 8246 8.740906 TGGAGAGTATAAGTCAAGTTTACAGAG 58.259 37.037 0.00 0.00 0.00 3.35
6928 8250 9.871238 TTGATGGAGAGTATAAGTCAAGTTTAC 57.129 33.333 0.00 0.00 0.00 2.01
6930 8252 7.550906 GCTTGATGGAGAGTATAAGTCAAGTTT 59.449 37.037 12.16 0.00 41.70 2.66
6939 8261 6.299805 ACAACAGCTTGATGGAGAGTATAA 57.700 37.500 0.00 0.00 0.00 0.98
6940 8262 5.939764 ACAACAGCTTGATGGAGAGTATA 57.060 39.130 0.00 0.00 0.00 1.47
6943 8265 3.498774 AACAACAGCTTGATGGAGAGT 57.501 42.857 0.00 0.00 0.00 3.24
6944 8266 4.999950 ACTAAACAACAGCTTGATGGAGAG 59.000 41.667 0.00 0.00 0.00 3.20
6945 8267 4.973168 ACTAAACAACAGCTTGATGGAGA 58.027 39.130 0.00 0.00 0.00 3.71
6946 8268 5.934625 AGTACTAAACAACAGCTTGATGGAG 59.065 40.000 0.00 0.00 0.00 3.86
6947 8269 5.865085 AGTACTAAACAACAGCTTGATGGA 58.135 37.500 0.00 0.00 0.00 3.41
6948 8270 6.348540 GGAAGTACTAAACAACAGCTTGATGG 60.349 42.308 0.00 0.00 0.00 3.51
6949 8271 6.428159 AGGAAGTACTAAACAACAGCTTGATG 59.572 38.462 0.00 0.00 0.00 3.07
6950 8272 6.534634 AGGAAGTACTAAACAACAGCTTGAT 58.465 36.000 0.00 0.00 0.00 2.57
7019 8388 6.938030 TCTGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
7023 8392 4.099573 CCTCTGTCCCATAATGTAAGACGT 59.900 45.833 0.00 0.00 0.00 4.34
7024 8393 4.341235 TCCTCTGTCCCATAATGTAAGACG 59.659 45.833 0.00 0.00 0.00 4.18
7025 8394 5.871396 TCCTCTGTCCCATAATGTAAGAC 57.129 43.478 0.00 0.00 0.00 3.01
7035 8404 9.047947 GGTAATATATTACTTCCTCTGTCCCAT 57.952 37.037 26.92 0.00 41.71 4.00
7036 8405 8.239478 AGGTAATATATTACTTCCTCTGTCCCA 58.761 37.037 26.92 0.00 41.71 4.37
7037 8406 8.667592 AGGTAATATATTACTTCCTCTGTCCC 57.332 38.462 26.92 11.89 41.71 4.46
7039 8408 9.843334 CGAAGGTAATATATTACTTCCTCTGTC 57.157 37.037 26.92 15.73 41.71 3.51
7040 8409 9.364653 ACGAAGGTAATATATTACTTCCTCTGT 57.635 33.333 26.92 17.30 41.71 3.41
7047 8416 7.765695 TCCGGACGAAGGTAATATATTACTT 57.234 36.000 26.92 20.54 41.71 2.24
7052 8421 8.302515 ACATATTCCGGACGAAGGTAATATAT 57.697 34.615 1.83 0.00 32.78 0.86
7053 8422 7.707624 ACATATTCCGGACGAAGGTAATATA 57.292 36.000 1.83 0.00 32.78 0.86
7054 8423 6.600882 ACATATTCCGGACGAAGGTAATAT 57.399 37.500 1.83 0.00 32.78 1.28
7056 8425 4.950205 ACATATTCCGGACGAAGGTAAT 57.050 40.909 1.83 0.00 32.78 1.89
7057 8426 4.741321 AACATATTCCGGACGAAGGTAA 57.259 40.909 1.83 0.00 32.78 2.85
7059 8428 3.622166 AAACATATTCCGGACGAAGGT 57.378 42.857 1.83 0.00 32.78 3.50
7062 8431 6.256975 CAGATGTAAAACATATTCCGGACGAA 59.743 38.462 1.83 0.00 39.27 3.85
7063 8432 5.751509 CAGATGTAAAACATATTCCGGACGA 59.248 40.000 1.83 0.00 39.27 4.20
7064 8433 5.522460 ACAGATGTAAAACATATTCCGGACG 59.478 40.000 1.83 0.00 39.27 4.79
7065 8434 6.920569 ACAGATGTAAAACATATTCCGGAC 57.079 37.500 1.83 0.00 39.27 4.79
7066 8435 8.647796 AGATACAGATGTAAAACATATTCCGGA 58.352 33.333 0.00 0.00 39.27 5.14
7067 8436 8.833231 AGATACAGATGTAAAACATATTCCGG 57.167 34.615 0.00 0.00 39.27 5.14
7099 8468 8.759782 CCTCCTTCCTAAATTAGTTGACTTAGA 58.240 37.037 0.00 0.00 0.00 2.10
7100 8469 7.988028 CCCTCCTTCCTAAATTAGTTGACTTAG 59.012 40.741 0.00 0.00 0.00 2.18
7101 8470 7.681168 TCCCTCCTTCCTAAATTAGTTGACTTA 59.319 37.037 0.00 0.00 0.00 2.24
7102 8471 6.504279 TCCCTCCTTCCTAAATTAGTTGACTT 59.496 38.462 0.00 0.00 0.00 3.01
7103 8472 6.030082 TCCCTCCTTCCTAAATTAGTTGACT 58.970 40.000 0.00 0.00 0.00 3.41
7104 8473 6.309389 TCCCTCCTTCCTAAATTAGTTGAC 57.691 41.667 0.00 0.00 0.00 3.18
7105 8474 5.428783 CCTCCCTCCTTCCTAAATTAGTTGA 59.571 44.000 0.00 0.00 0.00 3.18
7106 8475 5.428783 TCCTCCCTCCTTCCTAAATTAGTTG 59.571 44.000 0.00 0.00 0.00 3.16
7107 8476 5.610791 TCCTCCCTCCTTCCTAAATTAGTT 58.389 41.667 0.00 0.00 0.00 2.24
7108 8477 5.220521 CTCCTCCCTCCTTCCTAAATTAGT 58.779 45.833 0.00 0.00 0.00 2.24
7109 8478 5.220521 ACTCCTCCCTCCTTCCTAAATTAG 58.779 45.833 0.00 0.00 0.00 1.73
7110 8479 5.236425 ACTCCTCCCTCCTTCCTAAATTA 57.764 43.478 0.00 0.00 0.00 1.40
7111 8480 4.095616 ACTCCTCCCTCCTTCCTAAATT 57.904 45.455 0.00 0.00 0.00 1.82
7112 8481 3.805360 ACTCCTCCCTCCTTCCTAAAT 57.195 47.619 0.00 0.00 0.00 1.40
7113 8482 4.920781 ATACTCCTCCCTCCTTCCTAAA 57.079 45.455 0.00 0.00 0.00 1.85
7114 8483 4.920781 AATACTCCTCCCTCCTTCCTAA 57.079 45.455 0.00 0.00 0.00 2.69
7115 8484 6.105740 TGAATAATACTCCTCCCTCCTTCCTA 59.894 42.308 0.00 0.00 0.00 2.94
7116 8485 5.102609 TGAATAATACTCCTCCCTCCTTCCT 60.103 44.000 0.00 0.00 0.00 3.36
7117 8486 5.155905 TGAATAATACTCCTCCCTCCTTCC 58.844 45.833 0.00 0.00 0.00 3.46
7118 8487 5.841783 ACTGAATAATACTCCTCCCTCCTTC 59.158 44.000 0.00 0.00 0.00 3.46
7119 8488 5.793967 ACTGAATAATACTCCTCCCTCCTT 58.206 41.667 0.00 0.00 0.00 3.36
7120 8489 5.426325 ACTGAATAATACTCCTCCCTCCT 57.574 43.478 0.00 0.00 0.00 3.69
7121 8490 5.186215 GCTACTGAATAATACTCCTCCCTCC 59.814 48.000 0.00 0.00 0.00 4.30
7122 8491 6.014012 AGCTACTGAATAATACTCCTCCCTC 58.986 44.000 0.00 0.00 0.00 4.30
7123 8492 5.971493 AGCTACTGAATAATACTCCTCCCT 58.029 41.667 0.00 0.00 0.00 4.20
7124 8493 6.459923 CAAGCTACTGAATAATACTCCTCCC 58.540 44.000 0.00 0.00 0.00 4.30
7125 8494 5.929415 GCAAGCTACTGAATAATACTCCTCC 59.071 44.000 0.00 0.00 0.00 4.30
7126 8495 6.754193 AGCAAGCTACTGAATAATACTCCTC 58.246 40.000 0.00 0.00 0.00 3.71
7127 8496 6.553100 AGAGCAAGCTACTGAATAATACTCCT 59.447 38.462 0.00 0.00 0.00 3.69
7128 8497 6.754193 AGAGCAAGCTACTGAATAATACTCC 58.246 40.000 0.00 0.00 0.00 3.85
7129 8498 9.352784 CATAGAGCAAGCTACTGAATAATACTC 57.647 37.037 0.00 0.00 0.00 2.59
7130 8499 9.083422 TCATAGAGCAAGCTACTGAATAATACT 57.917 33.333 0.00 0.00 0.00 2.12
7131 8500 9.698309 TTCATAGAGCAAGCTACTGAATAATAC 57.302 33.333 0.00 0.00 0.00 1.89
7152 8521 5.528690 GCAGCCATGAGTAGACAATTTCATA 59.471 40.000 0.00 0.00 0.00 2.15
7153 8522 4.337555 GCAGCCATGAGTAGACAATTTCAT 59.662 41.667 0.00 0.00 0.00 2.57
7166 8535 0.379669 GTTGAATCGGCAGCCATGAG 59.620 55.000 13.30 0.00 0.00 2.90
7188 8557 1.156736 CTGTTTTGTAGGCCAGTCGG 58.843 55.000 5.01 0.00 0.00 4.79
7189 8558 0.517316 GCTGTTTTGTAGGCCAGTCG 59.483 55.000 5.01 0.00 0.00 4.18
7191 8560 0.179029 ACGCTGTTTTGTAGGCCAGT 60.179 50.000 5.01 0.00 0.00 4.00
7204 8573 1.862123 CGCATGTTTCAGACGCTGT 59.138 52.632 6.72 0.00 32.61 4.40
7205 8574 1.510623 GCGCATGTTTCAGACGCTG 60.511 57.895 0.30 1.02 45.71 5.18
7280 8651 1.177895 TTTCTGCGGCAAATGGCTCA 61.178 50.000 3.44 2.48 44.01 4.26
7311 8682 2.552231 AAATAGTGTGCGCCCTCCCC 62.552 60.000 4.18 0.00 0.00 4.81
7357 8745 3.564027 CGTTCGATGAAGGCCGGC 61.564 66.667 21.18 21.18 0.00 6.13
7364 8752 1.153901 GGCGTCTCCGTTCGATGAA 60.154 57.895 0.00 0.00 36.15 2.57
7412 8800 2.049063 GAGAGCCACACGCGAGTT 60.049 61.111 15.93 0.00 46.40 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.