Multiple sequence alignment - TraesCS3A01G336400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G336400 chr3A 100.000 3176 0 0 1 3176 583077385 583080560 0.000000e+00 5866
1 TraesCS3A01G336400 chr3A 96.042 379 15 0 2798 3176 92317031 92316653 4.500000e-173 617
2 TraesCS3A01G336400 chr3A 96.011 376 15 0 2801 3176 92429883 92429508 2.090000e-171 612
3 TraesCS3A01G336400 chr3A 95.778 379 16 0 2798 3176 502882036 502881658 2.090000e-171 612
4 TraesCS3A01G336400 chr5A 97.231 2817 62 7 4 2812 439808559 439811367 0.000000e+00 4756
5 TraesCS3A01G336400 chr5A 97.480 1587 30 3 1212 2797 22978690 22977113 0.000000e+00 2700
6 TraesCS3A01G336400 chr5A 96.074 968 36 2 3 970 390557178 390558143 0.000000e+00 1576
7 TraesCS3A01G336400 chr6A 97.736 2694 56 4 3 2693 9184749 9187440 0.000000e+00 4632
8 TraesCS3A01G336400 chr4B 94.456 2796 141 7 3 2797 215062192 215059410 0.000000e+00 4292
9 TraesCS3A01G336400 chr4B 93.276 2796 149 7 3 2797 215014173 215011416 0.000000e+00 4085
10 TraesCS3A01G336400 chr7A 97.416 2167 45 4 633 2797 31808966 31811123 0.000000e+00 3681
11 TraesCS3A01G336400 chr7A 97.226 721 20 0 3 723 31808383 31809103 0.000000e+00 1221
12 TraesCS3A01G336400 chr7A 96.834 379 12 0 2798 3176 384197228 384197606 4.470000e-178 634
13 TraesCS3A01G336400 chr7A 95.778 379 16 0 2798 3176 201651678 201651300 2.090000e-171 612
14 TraesCS3A01G336400 chr7A 95.778 379 16 0 2798 3176 680145717 680145339 2.090000e-171 612
15 TraesCS3A01G336400 chr7A 95.756 377 16 0 2798 3174 561644001 561644377 2.710000e-170 608
16 TraesCS3A01G336400 chr6B 97.416 2167 45 4 633 2797 532352178 532354335 0.000000e+00 3681
17 TraesCS3A01G336400 chr6B 97.365 721 19 0 3 723 532351595 532352315 0.000000e+00 1227
18 TraesCS3A01G336400 chr6B 97.512 402 10 0 1002 1403 171551477 171551878 0.000000e+00 688
19 TraesCS3A01G336400 chr2A 95.668 2170 73 11 633 2800 180213945 180211795 0.000000e+00 3467
20 TraesCS3A01G336400 chr2A 97.834 785 16 1 3 787 180214528 180213745 0.000000e+00 1354
21 TraesCS3A01G336400 chr2A 98.731 394 3 2 2405 2797 758963835 758964227 0.000000e+00 699
22 TraesCS3A01G336400 chr2A 96.042 379 15 0 2798 3176 584362738 584363116 4.500000e-173 617
23 TraesCS3A01G336400 chr1B 97.480 1587 30 3 1212 2797 150371923 150370346 0.000000e+00 2700
24 TraesCS3A01G336400 chr1B 97.761 402 9 0 1002 1403 235843890 235844291 0.000000e+00 693
25 TraesCS3A01G336400 chr2B 94.401 893 49 1 108 999 124292954 124293846 0.000000e+00 1371
26 TraesCS3A01G336400 chr1A 95.515 379 17 0 2798 3176 91372611 91372233 9.740000e-170 606


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G336400 chr3A 583077385 583080560 3175 False 5866.0 5866 100.0000 1 3176 1 chr3A.!!$F1 3175
1 TraesCS3A01G336400 chr5A 439808559 439811367 2808 False 4756.0 4756 97.2310 4 2812 1 chr5A.!!$F2 2808
2 TraesCS3A01G336400 chr5A 22977113 22978690 1577 True 2700.0 2700 97.4800 1212 2797 1 chr5A.!!$R1 1585
3 TraesCS3A01G336400 chr5A 390557178 390558143 965 False 1576.0 1576 96.0740 3 970 1 chr5A.!!$F1 967
4 TraesCS3A01G336400 chr6A 9184749 9187440 2691 False 4632.0 4632 97.7360 3 2693 1 chr6A.!!$F1 2690
5 TraesCS3A01G336400 chr4B 215059410 215062192 2782 True 4292.0 4292 94.4560 3 2797 1 chr4B.!!$R2 2794
6 TraesCS3A01G336400 chr4B 215011416 215014173 2757 True 4085.0 4085 93.2760 3 2797 1 chr4B.!!$R1 2794
7 TraesCS3A01G336400 chr7A 31808383 31811123 2740 False 2451.0 3681 97.3210 3 2797 2 chr7A.!!$F3 2794
8 TraesCS3A01G336400 chr6B 532351595 532354335 2740 False 2454.0 3681 97.3905 3 2797 2 chr6B.!!$F2 2794
9 TraesCS3A01G336400 chr2A 180211795 180214528 2733 True 2410.5 3467 96.7510 3 2800 2 chr2A.!!$R1 2797
10 TraesCS3A01G336400 chr1B 150370346 150371923 1577 True 2700.0 2700 97.4800 1212 2797 1 chr1B.!!$R1 1585
11 TraesCS3A01G336400 chr2B 124292954 124293846 892 False 1371.0 1371 94.4010 108 999 1 chr2B.!!$F1 891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 581 1.738474 TGAGGCTGATGCTATCCCAT 58.262 50.000 0.0 0.0 39.59 4.00 F
1865 1983 1.412343 GGGCAAAGCAAACAAGAAGGA 59.588 47.619 0.0 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1910 2028 1.009997 AGGGGATGCAAGGGATTCAA 58.990 50.0 0.0 0.0 0.00 2.69 R
3030 3164 0.035152 ATGAATTGGCTCAGACGGCA 60.035 50.0 0.0 0.0 37.72 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.865387 TCCAGGGGGATTAAAAATACCCA 59.135 43.478 19.45 0.00 43.30 4.51
43 44 4.806342 CCCAAAGGTACATATACAACGC 57.194 45.455 0.00 0.00 32.40 4.84
240 241 5.296748 CCAACTACCCCAAAAGAATTGTTG 58.703 41.667 0.00 0.00 34.07 3.33
322 323 6.402222 AGTCGCTTCAAGATTCTTACTCAAT 58.598 36.000 0.00 0.00 0.00 2.57
368 369 7.903145 TCTCAGATTAAAGTGGTAGTTGCTTA 58.097 34.615 0.00 0.00 0.00 3.09
580 581 1.738474 TGAGGCTGATGCTATCCCAT 58.262 50.000 0.00 0.00 39.59 4.00
664 719 4.991776 TGTATTTCCATGTGAGGGAACAA 58.008 39.130 0.00 0.00 43.81 2.83
897 1009 1.912731 TGCCCTGCTGTAAGTTGGATA 59.087 47.619 0.00 0.00 35.30 2.59
1221 1337 1.947456 GTCACTCAAACCCAAGTGGAC 59.053 52.381 0.00 0.00 42.52 4.02
1228 1344 1.628238 AACCCAAGTGGACCGACACA 61.628 55.000 0.00 0.00 43.72 3.72
1549 1667 4.819630 CCTTACCTTGTGTGCAGAAAACTA 59.180 41.667 0.00 0.00 0.00 2.24
1552 1670 4.013728 ACCTTGTGTGCAGAAAACTACAA 58.986 39.130 0.00 0.00 0.00 2.41
1683 1801 4.033009 TGGATGATGGTAGTGATGACAGT 58.967 43.478 0.00 0.00 0.00 3.55
1742 1860 3.439476 GCAGACAATGATGAAGCTGACTT 59.561 43.478 0.00 0.00 39.43 3.01
1865 1983 1.412343 GGGCAAAGCAAACAAGAAGGA 59.588 47.619 0.00 0.00 0.00 3.36
1868 1986 3.493176 GGCAAAGCAAACAAGAAGGACAT 60.493 43.478 0.00 0.00 0.00 3.06
1910 2028 5.720041 TGGTAACCAGTATCAAGAAGCTAGT 59.280 40.000 0.00 0.00 0.00 2.57
2191 2309 4.148079 TCACTGAATTGCCACATGGTTAA 58.852 39.130 0.00 0.00 37.57 2.01
2268 2386 3.245016 TGGGAGCATGGATAACATCATCC 60.245 47.826 0.00 0.00 44.21 3.51
2279 2397 8.481492 TGGATAACATCATCCTGCATATTTTT 57.519 30.769 3.94 0.00 44.26 1.94
2479 2605 2.294233 TCTGGAAATGCAGAGTTTGTGC 59.706 45.455 0.01 0.00 41.59 4.57
2781 2915 0.753111 GGTAGGGCAAGATTGGGCTG 60.753 60.000 0.00 0.00 0.00 4.85
2797 2931 3.362040 CTGAATCCAAACAGCCCCA 57.638 52.632 0.00 0.00 0.00 4.96
2802 2936 2.442236 ATCCAAACAGCCCCATAGTG 57.558 50.000 0.00 0.00 0.00 2.74
2803 2937 1.072266 TCCAAACAGCCCCATAGTGT 58.928 50.000 0.00 0.00 0.00 3.55
2807 2941 3.091545 CAAACAGCCCCATAGTGTCAAT 58.908 45.455 0.00 0.00 0.00 2.57
2810 2944 4.584638 ACAGCCCCATAGTGTCAATAAA 57.415 40.909 0.00 0.00 0.00 1.40
2811 2945 5.129368 ACAGCCCCATAGTGTCAATAAAT 57.871 39.130 0.00 0.00 0.00 1.40
2812 2946 5.133221 ACAGCCCCATAGTGTCAATAAATC 58.867 41.667 0.00 0.00 0.00 2.17
2813 2947 4.520492 CAGCCCCATAGTGTCAATAAATCC 59.480 45.833 0.00 0.00 0.00 3.01
2814 2948 3.826729 GCCCCATAGTGTCAATAAATCCC 59.173 47.826 0.00 0.00 0.00 3.85
2815 2949 4.447762 GCCCCATAGTGTCAATAAATCCCT 60.448 45.833 0.00 0.00 0.00 4.20
2816 2950 5.316987 CCCCATAGTGTCAATAAATCCCTC 58.683 45.833 0.00 0.00 0.00 4.30
2817 2951 5.316987 CCCATAGTGTCAATAAATCCCTCC 58.683 45.833 0.00 0.00 0.00 4.30
2818 2952 5.163099 CCCATAGTGTCAATAAATCCCTCCA 60.163 44.000 0.00 0.00 0.00 3.86
2819 2953 5.765182 CCATAGTGTCAATAAATCCCTCCAC 59.235 44.000 0.00 0.00 0.00 4.02
2820 2954 4.927267 AGTGTCAATAAATCCCTCCACA 57.073 40.909 0.00 0.00 0.00 4.17
2821 2955 5.456921 AGTGTCAATAAATCCCTCCACAT 57.543 39.130 0.00 0.00 0.00 3.21
2822 2956 5.440610 AGTGTCAATAAATCCCTCCACATC 58.559 41.667 0.00 0.00 0.00 3.06
2823 2957 5.044919 AGTGTCAATAAATCCCTCCACATCA 60.045 40.000 0.00 0.00 0.00 3.07
2824 2958 5.829924 GTGTCAATAAATCCCTCCACATCAT 59.170 40.000 0.00 0.00 0.00 2.45
2825 2959 6.016777 GTGTCAATAAATCCCTCCACATCATC 60.017 42.308 0.00 0.00 0.00 2.92
2826 2960 6.064060 GTCAATAAATCCCTCCACATCATCA 58.936 40.000 0.00 0.00 0.00 3.07
2827 2961 6.016777 GTCAATAAATCCCTCCACATCATCAC 60.017 42.308 0.00 0.00 0.00 3.06
2828 2962 5.651612 ATAAATCCCTCCACATCATCACA 57.348 39.130 0.00 0.00 0.00 3.58
2829 2963 4.320546 AAATCCCTCCACATCATCACAA 57.679 40.909 0.00 0.00 0.00 3.33
2830 2964 2.787473 TCCCTCCACATCATCACAAC 57.213 50.000 0.00 0.00 0.00 3.32
2831 2965 1.066215 TCCCTCCACATCATCACAACG 60.066 52.381 0.00 0.00 0.00 4.10
2832 2966 1.339055 CCCTCCACATCATCACAACGT 60.339 52.381 0.00 0.00 0.00 3.99
2833 2967 1.733912 CCTCCACATCATCACAACGTG 59.266 52.381 0.00 0.00 34.45 4.49
2834 2968 1.733912 CTCCACATCATCACAACGTGG 59.266 52.381 0.00 0.00 46.90 4.94
2835 2969 1.071542 TCCACATCATCACAACGTGGT 59.928 47.619 6.75 0.00 45.90 4.16
2836 2970 1.879380 CCACATCATCACAACGTGGTT 59.121 47.619 0.00 0.00 41.80 3.67
2837 2971 2.095768 CCACATCATCACAACGTGGTTC 60.096 50.000 0.00 0.00 41.80 3.62
2838 2972 2.807967 CACATCATCACAACGTGGTTCT 59.192 45.455 0.00 0.00 33.87 3.01
2839 2973 3.250762 CACATCATCACAACGTGGTTCTT 59.749 43.478 0.00 0.00 33.87 2.52
2840 2974 3.882888 ACATCATCACAACGTGGTTCTTT 59.117 39.130 0.00 0.00 33.87 2.52
2841 2975 4.338118 ACATCATCACAACGTGGTTCTTTT 59.662 37.500 0.00 0.00 33.87 2.27
2842 2976 4.285807 TCATCACAACGTGGTTCTTTTG 57.714 40.909 0.00 0.00 33.87 2.44
2843 2977 3.692101 TCATCACAACGTGGTTCTTTTGT 59.308 39.130 0.00 0.00 33.87 2.83
2844 2978 4.876679 TCATCACAACGTGGTTCTTTTGTA 59.123 37.500 0.00 0.00 33.87 2.41
2845 2979 5.529430 TCATCACAACGTGGTTCTTTTGTAT 59.471 36.000 0.00 0.00 33.87 2.29
2846 2980 5.821516 TCACAACGTGGTTCTTTTGTATT 57.178 34.783 0.00 0.00 33.87 1.89
2847 2981 5.574082 TCACAACGTGGTTCTTTTGTATTG 58.426 37.500 0.00 0.00 33.87 1.90
2848 2982 4.206200 CACAACGTGGTTCTTTTGTATTGC 59.794 41.667 0.00 0.00 31.00 3.56
2849 2983 3.636282 ACGTGGTTCTTTTGTATTGCC 57.364 42.857 0.00 0.00 0.00 4.52
2850 2984 2.295070 ACGTGGTTCTTTTGTATTGCCC 59.705 45.455 0.00 0.00 0.00 5.36
2851 2985 2.556622 CGTGGTTCTTTTGTATTGCCCT 59.443 45.455 0.00 0.00 0.00 5.19
2852 2986 3.365969 CGTGGTTCTTTTGTATTGCCCTC 60.366 47.826 0.00 0.00 0.00 4.30
2853 2987 3.572255 GTGGTTCTTTTGTATTGCCCTCA 59.428 43.478 0.00 0.00 0.00 3.86
2854 2988 4.038642 GTGGTTCTTTTGTATTGCCCTCAA 59.961 41.667 0.00 0.00 36.51 3.02
2855 2989 4.651503 TGGTTCTTTTGTATTGCCCTCAAA 59.348 37.500 0.00 0.00 35.56 2.69
2856 2990 5.129485 TGGTTCTTTTGTATTGCCCTCAAAA 59.871 36.000 0.00 0.00 38.27 2.44
2877 3011 3.729862 GGGACTAAATAGACCCGACAG 57.270 52.381 11.35 0.00 45.62 3.51
2878 3012 3.294214 GGGACTAAATAGACCCGACAGA 58.706 50.000 11.35 0.00 45.62 3.41
2879 3013 3.703052 GGGACTAAATAGACCCGACAGAA 59.297 47.826 11.35 0.00 45.62 3.02
2880 3014 4.161001 GGGACTAAATAGACCCGACAGAAA 59.839 45.833 11.35 0.00 45.62 2.52
2881 3015 5.163332 GGGACTAAATAGACCCGACAGAAAT 60.163 44.000 11.35 0.00 45.62 2.17
2882 3016 5.984323 GGACTAAATAGACCCGACAGAAATC 59.016 44.000 0.00 0.00 33.00 2.17
2883 3017 6.406624 GGACTAAATAGACCCGACAGAAATCA 60.407 42.308 0.00 0.00 33.00 2.57
2884 3018 7.125792 ACTAAATAGACCCGACAGAAATCAT 57.874 36.000 0.00 0.00 0.00 2.45
2885 3019 8.246430 ACTAAATAGACCCGACAGAAATCATA 57.754 34.615 0.00 0.00 0.00 2.15
2886 3020 8.701895 ACTAAATAGACCCGACAGAAATCATAA 58.298 33.333 0.00 0.00 0.00 1.90
2887 3021 9.542462 CTAAATAGACCCGACAGAAATCATAAA 57.458 33.333 0.00 0.00 0.00 1.40
2888 3022 8.438676 AAATAGACCCGACAGAAATCATAAAG 57.561 34.615 0.00 0.00 0.00 1.85
2889 3023 5.422214 AGACCCGACAGAAATCATAAAGT 57.578 39.130 0.00 0.00 0.00 2.66
2890 3024 5.178797 AGACCCGACAGAAATCATAAAGTG 58.821 41.667 0.00 0.00 0.00 3.16
2891 3025 5.046591 AGACCCGACAGAAATCATAAAGTGA 60.047 40.000 0.00 0.00 42.06 3.41
2892 3026 4.935808 ACCCGACAGAAATCATAAAGTGAC 59.064 41.667 0.00 0.00 40.28 3.67
2893 3027 4.935205 CCCGACAGAAATCATAAAGTGACA 59.065 41.667 0.00 0.00 40.28 3.58
2894 3028 5.586243 CCCGACAGAAATCATAAAGTGACAT 59.414 40.000 0.00 0.00 40.28 3.06
2895 3029 6.238211 CCCGACAGAAATCATAAAGTGACATC 60.238 42.308 0.00 0.00 40.28 3.06
2896 3030 6.536582 CCGACAGAAATCATAAAGTGACATCT 59.463 38.462 0.00 0.00 40.28 2.90
2897 3031 7.254252 CCGACAGAAATCATAAAGTGACATCTC 60.254 40.741 0.00 0.00 40.28 2.75
2898 3032 7.254252 CGACAGAAATCATAAAGTGACATCTCC 60.254 40.741 0.00 0.00 40.28 3.71
2899 3033 7.628234 ACAGAAATCATAAAGTGACATCTCCT 58.372 34.615 0.00 0.00 40.28 3.69
2900 3034 8.105829 ACAGAAATCATAAAGTGACATCTCCTT 58.894 33.333 0.00 0.00 40.28 3.36
2901 3035 9.605275 CAGAAATCATAAAGTGACATCTCCTTA 57.395 33.333 0.00 0.00 40.28 2.69
2904 3038 7.976135 ATCATAAAGTGACATCTCCTTATGC 57.024 36.000 7.15 0.00 40.28 3.14
2905 3039 7.129457 TCATAAAGTGACATCTCCTTATGCT 57.871 36.000 7.15 0.00 0.00 3.79
2906 3040 7.212976 TCATAAAGTGACATCTCCTTATGCTC 58.787 38.462 7.15 0.00 0.00 4.26
2907 3041 5.426689 AAAGTGACATCTCCTTATGCTCA 57.573 39.130 0.00 0.00 0.00 4.26
2908 3042 5.627182 AAGTGACATCTCCTTATGCTCAT 57.373 39.130 0.00 0.00 0.00 2.90
2909 3043 5.212532 AGTGACATCTCCTTATGCTCATC 57.787 43.478 0.00 0.00 0.00 2.92
2910 3044 4.652881 AGTGACATCTCCTTATGCTCATCA 59.347 41.667 0.00 0.00 0.00 3.07
2911 3045 5.307456 AGTGACATCTCCTTATGCTCATCAT 59.693 40.000 0.00 0.00 39.17 2.45
2912 3046 6.496218 AGTGACATCTCCTTATGCTCATCATA 59.504 38.462 0.00 0.00 36.63 2.15
2913 3047 7.180587 AGTGACATCTCCTTATGCTCATCATAT 59.819 37.037 0.00 0.00 37.49 1.78
2914 3048 8.473219 GTGACATCTCCTTATGCTCATCATATA 58.527 37.037 0.00 0.00 37.49 0.86
2915 3049 9.039165 TGACATCTCCTTATGCTCATCATATAA 57.961 33.333 0.00 0.00 37.49 0.98
2916 3050 9.881649 GACATCTCCTTATGCTCATCATATAAA 57.118 33.333 0.00 0.00 37.49 1.40
2928 3062 9.066892 TGCTCATCATATAAATAAAACTCCACC 57.933 33.333 0.00 0.00 0.00 4.61
2929 3063 8.230486 GCTCATCATATAAATAAAACTCCACCG 58.770 37.037 0.00 0.00 0.00 4.94
2930 3064 9.273016 CTCATCATATAAATAAAACTCCACCGT 57.727 33.333 0.00 0.00 0.00 4.83
2945 3079 4.019983 CGTAGGTGGTGAGCTCCT 57.980 61.111 12.15 10.31 35.60 3.69
2946 3080 3.186345 CGTAGGTGGTGAGCTCCTA 57.814 57.895 12.15 8.27 33.34 2.94
2947 3081 1.025812 CGTAGGTGGTGAGCTCCTAG 58.974 60.000 12.15 4.35 34.96 3.02
2948 3082 1.408405 CGTAGGTGGTGAGCTCCTAGA 60.408 57.143 12.15 0.00 34.96 2.43
2949 3083 2.736347 GTAGGTGGTGAGCTCCTAGAA 58.264 52.381 12.15 0.00 34.96 2.10
2950 3084 2.559381 AGGTGGTGAGCTCCTAGAAT 57.441 50.000 12.15 0.00 0.00 2.40
2951 3085 2.114616 AGGTGGTGAGCTCCTAGAATG 58.885 52.381 12.15 0.00 0.00 2.67
2952 3086 1.139853 GGTGGTGAGCTCCTAGAATGG 59.860 57.143 12.15 0.00 0.00 3.16
2953 3087 2.111384 GTGGTGAGCTCCTAGAATGGA 58.889 52.381 12.15 0.00 34.52 3.41
2954 3088 2.501723 GTGGTGAGCTCCTAGAATGGAA 59.498 50.000 12.15 0.00 35.43 3.53
2955 3089 3.055094 GTGGTGAGCTCCTAGAATGGAAA 60.055 47.826 12.15 0.00 35.43 3.13
2956 3090 3.782523 TGGTGAGCTCCTAGAATGGAAAT 59.217 43.478 12.15 0.00 35.43 2.17
2957 3091 4.133078 GGTGAGCTCCTAGAATGGAAATG 58.867 47.826 12.15 0.00 35.43 2.32
2958 3092 4.141620 GGTGAGCTCCTAGAATGGAAATGA 60.142 45.833 12.15 0.00 35.43 2.57
2959 3093 5.431765 GTGAGCTCCTAGAATGGAAATGAA 58.568 41.667 12.15 0.00 35.43 2.57
2960 3094 5.882557 GTGAGCTCCTAGAATGGAAATGAAA 59.117 40.000 12.15 0.00 35.43 2.69
2961 3095 6.038050 GTGAGCTCCTAGAATGGAAATGAAAG 59.962 42.308 12.15 0.00 35.43 2.62
2962 3096 6.072199 AGCTCCTAGAATGGAAATGAAAGT 57.928 37.500 0.00 0.00 35.43 2.66
2963 3097 6.488715 AGCTCCTAGAATGGAAATGAAAGTT 58.511 36.000 0.00 0.00 35.43 2.66
2964 3098 6.950619 AGCTCCTAGAATGGAAATGAAAGTTT 59.049 34.615 0.00 0.00 35.43 2.66
2965 3099 7.452813 AGCTCCTAGAATGGAAATGAAAGTTTT 59.547 33.333 0.00 0.00 35.43 2.43
2966 3100 7.543520 GCTCCTAGAATGGAAATGAAAGTTTTG 59.456 37.037 0.00 0.00 35.43 2.44
2967 3101 7.378181 TCCTAGAATGGAAATGAAAGTTTTGC 58.622 34.615 0.00 0.00 32.39 3.68
2968 3102 7.015098 TCCTAGAATGGAAATGAAAGTTTTGCA 59.985 33.333 0.00 0.00 38.50 4.08
2969 3103 6.849588 AGAATGGAAATGAAAGTTTTGCAC 57.150 33.333 0.00 0.00 37.26 4.57
2970 3104 6.347696 AGAATGGAAATGAAAGTTTTGCACA 58.652 32.000 0.00 0.00 37.26 4.57
2971 3105 6.822676 AGAATGGAAATGAAAGTTTTGCACAA 59.177 30.769 0.00 0.00 37.26 3.33
2972 3106 6.998968 ATGGAAATGAAAGTTTTGCACAAA 57.001 29.167 0.00 0.00 37.26 2.83
2973 3107 6.419980 TGGAAATGAAAGTTTTGCACAAAG 57.580 33.333 0.00 0.00 30.73 2.77
2974 3108 6.169094 TGGAAATGAAAGTTTTGCACAAAGA 58.831 32.000 0.00 0.00 30.73 2.52
2975 3109 6.822676 TGGAAATGAAAGTTTTGCACAAAGAT 59.177 30.769 0.00 0.00 30.73 2.40
2976 3110 7.984050 TGGAAATGAAAGTTTTGCACAAAGATA 59.016 29.630 0.00 0.00 30.73 1.98
2977 3111 8.992073 GGAAATGAAAGTTTTGCACAAAGATAT 58.008 29.630 0.00 0.00 0.00 1.63
2981 3115 8.715191 TGAAAGTTTTGCACAAAGATATTTGT 57.285 26.923 12.58 12.58 45.17 2.83
2991 3125 5.809001 ACAAAGATATTTGTGAGCAGGAGA 58.191 37.500 17.24 0.00 42.91 3.71
2992 3126 6.421485 ACAAAGATATTTGTGAGCAGGAGAT 58.579 36.000 17.24 0.00 42.91 2.75
2993 3127 7.568349 ACAAAGATATTTGTGAGCAGGAGATA 58.432 34.615 17.24 0.00 42.91 1.98
2994 3128 7.497249 ACAAAGATATTTGTGAGCAGGAGATAC 59.503 37.037 17.24 0.00 42.91 2.24
2995 3129 6.992664 AGATATTTGTGAGCAGGAGATACT 57.007 37.500 0.00 0.00 0.00 2.12
2996 3130 6.757237 AGATATTTGTGAGCAGGAGATACTG 58.243 40.000 0.00 0.00 41.41 2.74
2997 3131 6.552725 AGATATTTGTGAGCAGGAGATACTGA 59.447 38.462 0.00 0.00 40.97 3.41
2998 3132 5.627182 ATTTGTGAGCAGGAGATACTGAT 57.373 39.130 0.00 0.00 40.97 2.90
3001 3135 2.346099 GAGCAGGAGATACTGATCGC 57.654 55.000 0.00 0.00 43.01 4.58
3002 3136 1.611006 GAGCAGGAGATACTGATCGCA 59.389 52.381 0.00 0.00 43.01 5.10
3003 3137 2.230992 GAGCAGGAGATACTGATCGCAT 59.769 50.000 0.00 0.00 43.01 4.73
3004 3138 2.632028 AGCAGGAGATACTGATCGCATT 59.368 45.455 0.00 0.00 40.97 3.56
3005 3139 2.735663 GCAGGAGATACTGATCGCATTG 59.264 50.000 0.00 0.00 40.97 2.82
3006 3140 3.324117 CAGGAGATACTGATCGCATTGG 58.676 50.000 0.00 0.00 40.97 3.16
3007 3141 2.968574 AGGAGATACTGATCGCATTGGT 59.031 45.455 0.00 0.00 37.15 3.67
3008 3142 3.006323 AGGAGATACTGATCGCATTGGTC 59.994 47.826 0.00 0.00 37.15 4.02
3009 3143 2.983136 GAGATACTGATCGCATTGGTCG 59.017 50.000 0.00 0.00 37.15 4.79
3010 3144 2.362397 AGATACTGATCGCATTGGTCGT 59.638 45.455 0.00 0.00 37.15 4.34
3011 3145 1.921243 TACTGATCGCATTGGTCGTG 58.079 50.000 0.00 0.00 0.00 4.35
3012 3146 0.740868 ACTGATCGCATTGGTCGTGG 60.741 55.000 0.00 0.00 0.00 4.94
3013 3147 0.460109 CTGATCGCATTGGTCGTGGA 60.460 55.000 0.00 0.00 0.00 4.02
3014 3148 0.460109 TGATCGCATTGGTCGTGGAG 60.460 55.000 0.00 0.00 0.00 3.86
3015 3149 1.153369 ATCGCATTGGTCGTGGAGG 60.153 57.895 0.00 0.00 0.00 4.30
3016 3150 1.613317 ATCGCATTGGTCGTGGAGGA 61.613 55.000 0.00 0.00 0.00 3.71
3017 3151 1.375396 CGCATTGGTCGTGGAGGAA 60.375 57.895 0.00 0.00 0.00 3.36
3018 3152 0.953471 CGCATTGGTCGTGGAGGAAA 60.953 55.000 0.00 0.00 0.00 3.13
3019 3153 0.804989 GCATTGGTCGTGGAGGAAAG 59.195 55.000 0.00 0.00 0.00 2.62
3020 3154 0.804989 CATTGGTCGTGGAGGAAAGC 59.195 55.000 0.00 0.00 0.00 3.51
3021 3155 0.673644 ATTGGTCGTGGAGGAAAGCG 60.674 55.000 0.00 0.00 0.00 4.68
3022 3156 2.434359 GGTCGTGGAGGAAAGCGG 60.434 66.667 0.00 0.00 0.00 5.52
3023 3157 2.342648 GTCGTGGAGGAAAGCGGT 59.657 61.111 0.00 0.00 0.00 5.68
3024 3158 1.588082 GTCGTGGAGGAAAGCGGTA 59.412 57.895 0.00 0.00 0.00 4.02
3025 3159 0.037975 GTCGTGGAGGAAAGCGGTAA 60.038 55.000 0.00 0.00 0.00 2.85
3026 3160 0.245539 TCGTGGAGGAAAGCGGTAAG 59.754 55.000 0.00 0.00 0.00 2.34
3027 3161 0.739813 CGTGGAGGAAAGCGGTAAGG 60.740 60.000 0.00 0.00 0.00 2.69
3028 3162 1.025113 GTGGAGGAAAGCGGTAAGGC 61.025 60.000 0.00 0.00 0.00 4.35
3029 3163 1.451567 GGAGGAAAGCGGTAAGGCC 60.452 63.158 0.00 0.00 0.00 5.19
3030 3164 1.602771 GAGGAAAGCGGTAAGGCCT 59.397 57.895 0.00 0.00 34.25 5.19
3031 3165 0.744771 GAGGAAAGCGGTAAGGCCTG 60.745 60.000 5.69 0.00 34.25 4.85
3032 3166 2.407428 GGAAAGCGGTAAGGCCTGC 61.407 63.158 5.69 5.05 37.15 4.85
3033 3167 2.361230 AAAGCGGTAAGGCCTGCC 60.361 61.111 5.69 11.71 37.44 4.85
3037 3171 3.771160 CGGTAAGGCCTGCCGTCT 61.771 66.667 30.24 9.01 40.53 4.18
3038 3172 2.125106 GGTAAGGCCTGCCGTCTG 60.125 66.667 5.69 0.00 41.95 3.51
3039 3173 2.656069 GGTAAGGCCTGCCGTCTGA 61.656 63.158 5.69 0.00 41.95 3.27
3040 3174 1.153549 GTAAGGCCTGCCGTCTGAG 60.154 63.158 5.69 0.00 41.95 3.35
3041 3175 3.019003 TAAGGCCTGCCGTCTGAGC 62.019 63.158 5.69 0.00 41.95 4.26
3044 3178 4.704833 GCCTGCCGTCTGAGCCAA 62.705 66.667 0.00 0.00 0.00 4.52
3045 3179 2.270205 CCTGCCGTCTGAGCCAAT 59.730 61.111 0.00 0.00 0.00 3.16
3046 3180 1.377725 CCTGCCGTCTGAGCCAATT 60.378 57.895 0.00 0.00 0.00 2.32
3047 3181 1.372087 CCTGCCGTCTGAGCCAATTC 61.372 60.000 0.00 0.00 0.00 2.17
3048 3182 0.674581 CTGCCGTCTGAGCCAATTCA 60.675 55.000 0.00 0.00 0.00 2.57
3049 3183 0.035152 TGCCGTCTGAGCCAATTCAT 60.035 50.000 0.00 0.00 0.00 2.57
3050 3184 0.379669 GCCGTCTGAGCCAATTCATG 59.620 55.000 0.00 0.00 0.00 3.07
3051 3185 2.013563 GCCGTCTGAGCCAATTCATGA 61.014 52.381 0.00 0.00 0.00 3.07
3052 3186 2.358957 CCGTCTGAGCCAATTCATGAA 58.641 47.619 11.26 11.26 0.00 2.57
3053 3187 2.749076 CCGTCTGAGCCAATTCATGAAA 59.251 45.455 13.09 0.00 0.00 2.69
3054 3188 3.191162 CCGTCTGAGCCAATTCATGAAAA 59.809 43.478 13.09 0.00 0.00 2.29
3055 3189 4.142315 CCGTCTGAGCCAATTCATGAAAAT 60.142 41.667 13.09 1.49 0.00 1.82
3056 3190 5.032863 CGTCTGAGCCAATTCATGAAAATC 58.967 41.667 13.09 6.95 0.00 2.17
3057 3191 5.163683 CGTCTGAGCCAATTCATGAAAATCT 60.164 40.000 13.09 7.34 0.00 2.40
3058 3192 6.624423 CGTCTGAGCCAATTCATGAAAATCTT 60.624 38.462 13.09 0.00 0.00 2.40
3059 3193 6.750963 GTCTGAGCCAATTCATGAAAATCTTC 59.249 38.462 13.09 8.64 0.00 2.87
3060 3194 6.434965 TCTGAGCCAATTCATGAAAATCTTCA 59.565 34.615 13.09 12.41 45.53 3.02
3073 3207 7.104043 TGAAAATCTTCATAAATCCCAGCTG 57.896 36.000 6.78 6.78 36.62 4.24
3074 3208 5.526506 AAATCTTCATAAATCCCAGCTGC 57.473 39.130 8.66 0.00 0.00 5.25
3075 3209 3.939740 TCTTCATAAATCCCAGCTGCT 57.060 42.857 8.66 0.00 0.00 4.24
3076 3210 3.813443 TCTTCATAAATCCCAGCTGCTC 58.187 45.455 8.66 0.00 0.00 4.26
3077 3211 3.457380 TCTTCATAAATCCCAGCTGCTCT 59.543 43.478 8.66 0.00 0.00 4.09
3078 3212 3.939740 TCATAAATCCCAGCTGCTCTT 57.060 42.857 8.66 1.01 0.00 2.85
3079 3213 5.130975 TCTTCATAAATCCCAGCTGCTCTTA 59.869 40.000 8.66 3.36 0.00 2.10
3080 3214 5.372343 TCATAAATCCCAGCTGCTCTTAA 57.628 39.130 8.66 0.00 0.00 1.85
3081 3215 5.371526 TCATAAATCCCAGCTGCTCTTAAG 58.628 41.667 8.66 0.00 0.00 1.85
3082 3216 5.130975 TCATAAATCCCAGCTGCTCTTAAGA 59.869 40.000 8.66 4.81 0.00 2.10
3083 3217 4.307032 AAATCCCAGCTGCTCTTAAGAA 57.693 40.909 8.66 0.00 0.00 2.52
3084 3218 4.307032 AATCCCAGCTGCTCTTAAGAAA 57.693 40.909 8.66 0.00 0.00 2.52
3085 3219 4.516652 ATCCCAGCTGCTCTTAAGAAAT 57.483 40.909 8.66 0.00 0.00 2.17
3086 3220 3.878778 TCCCAGCTGCTCTTAAGAAATC 58.121 45.455 8.66 0.00 0.00 2.17
3087 3221 2.948315 CCCAGCTGCTCTTAAGAAATCC 59.052 50.000 8.66 0.00 0.00 3.01
3088 3222 3.371380 CCCAGCTGCTCTTAAGAAATCCT 60.371 47.826 8.66 0.00 0.00 3.24
3089 3223 3.876320 CCAGCTGCTCTTAAGAAATCCTC 59.124 47.826 8.66 0.00 0.00 3.71
3090 3224 3.555139 CAGCTGCTCTTAAGAAATCCTCG 59.445 47.826 6.63 0.00 0.00 4.63
3091 3225 2.869192 GCTGCTCTTAAGAAATCCTCGG 59.131 50.000 6.63 0.00 0.00 4.63
3092 3226 3.430929 GCTGCTCTTAAGAAATCCTCGGA 60.431 47.826 6.63 0.00 0.00 4.55
3093 3227 4.759782 CTGCTCTTAAGAAATCCTCGGAA 58.240 43.478 6.63 0.00 0.00 4.30
3094 3228 4.759782 TGCTCTTAAGAAATCCTCGGAAG 58.240 43.478 6.63 0.00 0.00 3.46
3095 3229 4.123506 GCTCTTAAGAAATCCTCGGAAGG 58.876 47.826 6.63 0.00 44.89 3.46
3096 3230 4.123506 CTCTTAAGAAATCCTCGGAAGGC 58.876 47.826 6.63 0.00 43.02 4.35
3097 3231 3.118371 TCTTAAGAAATCCTCGGAAGGCC 60.118 47.826 1.68 0.00 43.02 5.19
3098 3232 0.991920 AAGAAATCCTCGGAAGGCCA 59.008 50.000 5.01 0.00 43.02 5.36
3099 3233 1.216990 AGAAATCCTCGGAAGGCCAT 58.783 50.000 5.01 0.00 43.02 4.40
3100 3234 1.566231 AGAAATCCTCGGAAGGCCATT 59.434 47.619 5.01 0.00 43.02 3.16
3101 3235 1.950216 GAAATCCTCGGAAGGCCATTC 59.050 52.381 5.01 5.92 43.02 2.67
3102 3236 0.918983 AATCCTCGGAAGGCCATTCA 59.081 50.000 5.01 0.00 43.02 2.57
3103 3237 0.181350 ATCCTCGGAAGGCCATTCAC 59.819 55.000 5.01 0.10 43.02 3.18
3104 3238 1.198094 TCCTCGGAAGGCCATTCACA 61.198 55.000 5.01 0.00 43.02 3.58
3105 3239 0.107017 CCTCGGAAGGCCATTCACAT 60.107 55.000 5.01 0.00 39.91 3.21
3106 3240 1.019673 CTCGGAAGGCCATTCACATG 58.980 55.000 5.01 0.00 39.91 3.21
3107 3241 1.031571 TCGGAAGGCCATTCACATGC 61.032 55.000 5.01 0.00 39.91 4.06
3108 3242 1.818555 GGAAGGCCATTCACATGCC 59.181 57.895 5.01 0.00 39.91 4.40
3109 3243 1.679559 GGAAGGCCATTCACATGCCC 61.680 60.000 5.01 0.00 39.91 5.36
3110 3244 2.008268 GAAGGCCATTCACATGCCCG 62.008 60.000 5.01 0.00 32.75 6.13
3111 3245 2.440065 GGCCATTCACATGCCCGA 60.440 61.111 0.00 0.00 0.00 5.14
3112 3246 2.051518 GGCCATTCACATGCCCGAA 61.052 57.895 0.00 0.00 0.00 4.30
3113 3247 1.139520 GCCATTCACATGCCCGAAC 59.860 57.895 0.00 0.00 0.00 3.95
3114 3248 1.809207 CCATTCACATGCCCGAACC 59.191 57.895 0.00 0.00 0.00 3.62
3115 3249 0.680921 CCATTCACATGCCCGAACCT 60.681 55.000 0.00 0.00 0.00 3.50
3116 3250 0.734889 CATTCACATGCCCGAACCTC 59.265 55.000 0.00 0.00 0.00 3.85
3117 3251 0.394352 ATTCACATGCCCGAACCTCC 60.394 55.000 0.00 0.00 0.00 4.30
3118 3252 2.796483 TTCACATGCCCGAACCTCCG 62.796 60.000 0.00 0.00 0.00 4.63
3119 3253 4.778143 ACATGCCCGAACCTCCGC 62.778 66.667 0.00 0.00 0.00 5.54
3135 3269 2.202878 GCGGTGCGAGGCTGATTA 60.203 61.111 0.00 0.00 0.00 1.75
3136 3270 1.595382 GCGGTGCGAGGCTGATTAT 60.595 57.895 0.00 0.00 0.00 1.28
3137 3271 0.319555 GCGGTGCGAGGCTGATTATA 60.320 55.000 0.00 0.00 0.00 0.98
3138 3272 1.419374 CGGTGCGAGGCTGATTATAC 58.581 55.000 0.00 0.00 0.00 1.47
3139 3273 1.000163 CGGTGCGAGGCTGATTATACT 60.000 52.381 0.00 0.00 0.00 2.12
3140 3274 2.545952 CGGTGCGAGGCTGATTATACTT 60.546 50.000 0.00 0.00 0.00 2.24
3141 3275 3.305131 CGGTGCGAGGCTGATTATACTTA 60.305 47.826 0.00 0.00 0.00 2.24
3142 3276 4.238514 GGTGCGAGGCTGATTATACTTAG 58.761 47.826 0.00 0.00 0.00 2.18
3143 3277 4.238514 GTGCGAGGCTGATTATACTTAGG 58.761 47.826 0.00 0.00 0.00 2.69
3144 3278 3.254892 GCGAGGCTGATTATACTTAGGC 58.745 50.000 0.00 0.97 36.12 3.93
3145 3279 3.056465 GCGAGGCTGATTATACTTAGGCT 60.056 47.826 10.06 10.06 46.98 4.58
3146 3280 4.561734 GCGAGGCTGATTATACTTAGGCTT 60.562 45.833 11.28 0.00 44.75 4.35
3147 3281 5.164954 CGAGGCTGATTATACTTAGGCTTC 58.835 45.833 11.28 5.56 44.75 3.86
3148 3282 5.140747 AGGCTGATTATACTTAGGCTTCG 57.859 43.478 5.32 0.00 42.54 3.79
3149 3283 4.021016 AGGCTGATTATACTTAGGCTTCGG 60.021 45.833 5.32 0.00 42.54 4.30
3150 3284 4.262506 GGCTGATTATACTTAGGCTTCGGT 60.263 45.833 0.00 0.00 33.44 4.69
3151 3285 5.047519 GGCTGATTATACTTAGGCTTCGGTA 60.048 44.000 0.00 0.00 33.44 4.02
3152 3286 5.862860 GCTGATTATACTTAGGCTTCGGTAC 59.137 44.000 0.00 0.00 0.00 3.34
3153 3287 6.336842 TGATTATACTTAGGCTTCGGTACC 57.663 41.667 0.16 0.16 0.00 3.34
3154 3288 6.073314 TGATTATACTTAGGCTTCGGTACCT 58.927 40.000 10.90 0.00 40.24 3.08
3155 3289 6.552350 TGATTATACTTAGGCTTCGGTACCTT 59.448 38.462 10.90 0.00 37.50 3.50
3156 3290 6.796785 TTATACTTAGGCTTCGGTACCTTT 57.203 37.500 10.90 0.00 37.50 3.11
3157 3291 5.688814 ATACTTAGGCTTCGGTACCTTTT 57.311 39.130 10.90 0.00 37.50 2.27
3158 3292 3.935315 ACTTAGGCTTCGGTACCTTTTC 58.065 45.455 10.90 0.00 37.50 2.29
3159 3293 3.268330 CTTAGGCTTCGGTACCTTTTCC 58.732 50.000 10.90 6.20 37.50 3.13
3160 3294 1.359168 AGGCTTCGGTACCTTTTCCT 58.641 50.000 10.90 8.44 29.74 3.36
3161 3295 1.703513 AGGCTTCGGTACCTTTTCCTT 59.296 47.619 10.90 0.00 29.74 3.36
3162 3296 2.082231 GGCTTCGGTACCTTTTCCTTC 58.918 52.381 10.90 0.00 0.00 3.46
3163 3297 1.730612 GCTTCGGTACCTTTTCCTTCG 59.269 52.381 10.90 0.00 0.00 3.79
3164 3298 2.611224 GCTTCGGTACCTTTTCCTTCGA 60.611 50.000 10.90 0.00 0.00 3.71
3165 3299 3.251571 CTTCGGTACCTTTTCCTTCGAG 58.748 50.000 10.90 0.00 0.00 4.04
3166 3300 1.067354 TCGGTACCTTTTCCTTCGAGC 60.067 52.381 10.90 0.00 0.00 5.03
3167 3301 1.067071 CGGTACCTTTTCCTTCGAGCT 60.067 52.381 10.90 0.00 0.00 4.09
3168 3302 2.612221 CGGTACCTTTTCCTTCGAGCTT 60.612 50.000 10.90 0.00 0.00 3.74
3169 3303 3.409570 GGTACCTTTTCCTTCGAGCTTT 58.590 45.455 4.06 0.00 0.00 3.51
3170 3304 3.188667 GGTACCTTTTCCTTCGAGCTTTG 59.811 47.826 4.06 0.00 0.00 2.77
3171 3305 2.230660 ACCTTTTCCTTCGAGCTTTGG 58.769 47.619 0.00 0.00 0.00 3.28
3172 3306 1.068264 CCTTTTCCTTCGAGCTTTGGC 60.068 52.381 0.00 0.00 39.06 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.464069 GGTATTTTTAATCCCCCTGGACAT 58.536 41.667 0.00 0.00 45.58 3.06
1 2 4.326291 GGGTATTTTTAATCCCCCTGGACA 60.326 45.833 0.00 0.00 45.58 4.02
25 26 6.995511 ATGTTGCGTTGTATATGTACCTTT 57.004 33.333 0.00 0.00 0.00 3.11
65 66 6.040842 ATGAGTTAAAGTCAAGTTGGCACAAT 59.959 34.615 10.65 0.00 35.46 2.71
240 241 0.451783 GTGATGAATGGCGGTGGTTC 59.548 55.000 0.00 0.00 0.00 3.62
322 323 3.534357 TTTCAAAGGTATGAAGGGCCA 57.466 42.857 6.18 0.00 40.21 5.36
525 526 5.719085 ACTCTCTCTATCTGTCCACATTTGT 59.281 40.000 0.00 0.00 0.00 2.83
580 581 9.529325 CGTGGAAATACATCAAAGATACTAAGA 57.471 33.333 0.00 0.00 0.00 2.10
664 719 7.016153 TCAAAGGTACAGTACATCCTTCAAT 57.984 36.000 12.89 0.00 39.05 2.57
834 946 7.264294 AGGACAGAGAGACCAGATTAAATTT 57.736 36.000 0.00 0.00 34.24 1.82
876 988 0.698238 TCCAACTTACAGCAGGGCAT 59.302 50.000 0.00 0.00 0.00 4.40
879 991 3.879295 CACATATCCAACTTACAGCAGGG 59.121 47.826 0.00 0.00 0.00 4.45
897 1009 5.355071 AGCATACGAACATGAAACATCACAT 59.645 36.000 0.00 0.00 0.00 3.21
1023 1139 2.979058 GGAGTCCTCCTCGGTCTTT 58.021 57.895 0.41 0.00 46.16 2.52
1228 1344 3.438087 CACTTCTCCTTGCATTGACGATT 59.562 43.478 0.00 0.00 0.00 3.34
1388 1504 7.683704 GCAGCTATCCAGTCATTTCAAAATCAT 60.684 37.037 0.00 0.00 0.00 2.45
1396 1512 5.762218 ACAATAGCAGCTATCCAGTCATTTC 59.238 40.000 15.60 0.00 0.00 2.17
1549 1667 6.969043 TGGGTCTGGTAAGATAATTGATTGT 58.031 36.000 0.00 0.00 34.13 2.71
1552 1670 8.386264 CCTAATGGGTCTGGTAAGATAATTGAT 58.614 37.037 0.00 0.00 34.13 2.57
1683 1801 2.568956 CTCAAGTTCCCTCACATCCTCA 59.431 50.000 0.00 0.00 0.00 3.86
1727 1845 4.649692 AGTGTCAAAGTCAGCTTCATCAT 58.350 39.130 0.00 0.00 33.01 2.45
1742 1860 3.179048 CTGCGACGATCAATAGTGTCAA 58.821 45.455 0.00 0.00 0.00 3.18
1868 1986 9.332713 TGGTTACCATATCATCATTAGATACCA 57.667 33.333 0.00 0.00 31.32 3.25
1910 2028 1.009997 AGGGGATGCAAGGGATTCAA 58.990 50.000 0.00 0.00 0.00 2.69
2191 2309 5.128663 ACAAAAGGTTGCCACAAACTCTATT 59.871 36.000 0.00 0.00 38.39 1.73
2279 2397 5.588648 GCACCCAAGTTTGCTGTATATAGAA 59.411 40.000 0.00 0.00 35.74 2.10
2342 2460 4.413520 ACCATCTAGGACATAAACAGCCAT 59.586 41.667 0.00 0.00 41.22 4.40
2479 2605 3.733024 ATTAACCAACACACATACGCG 57.267 42.857 3.53 3.53 0.00 6.01
2608 2742 1.340088 TGGCACATTTGACTGGCATT 58.660 45.000 0.00 0.00 37.99 3.56
2673 2807 5.949354 TGTAGCCATTAGTACTTGCCAATTT 59.051 36.000 0.00 0.00 0.00 1.82
2781 2915 2.689983 CACTATGGGGCTGTTTGGATTC 59.310 50.000 0.00 0.00 0.00 2.52
2797 2931 6.575244 TGTGGAGGGATTTATTGACACTAT 57.425 37.500 0.00 0.00 0.00 2.12
2802 2936 6.016777 GTGATGATGTGGAGGGATTTATTGAC 60.017 42.308 0.00 0.00 0.00 3.18
2803 2937 6.064060 GTGATGATGTGGAGGGATTTATTGA 58.936 40.000 0.00 0.00 0.00 2.57
2807 2941 5.192927 GTTGTGATGATGTGGAGGGATTTA 58.807 41.667 0.00 0.00 0.00 1.40
2810 2944 2.420547 CGTTGTGATGATGTGGAGGGAT 60.421 50.000 0.00 0.00 0.00 3.85
2811 2945 1.066215 CGTTGTGATGATGTGGAGGGA 60.066 52.381 0.00 0.00 0.00 4.20
2812 2946 1.339055 ACGTTGTGATGATGTGGAGGG 60.339 52.381 0.00 0.00 0.00 4.30
2813 2947 1.733912 CACGTTGTGATGATGTGGAGG 59.266 52.381 0.00 0.00 35.23 4.30
2817 2951 2.807967 AGAACCACGTTGTGATGATGTG 59.192 45.455 0.00 0.00 35.23 3.21
2818 2952 3.126001 AGAACCACGTTGTGATGATGT 57.874 42.857 0.00 0.00 35.23 3.06
2819 2953 4.488126 AAAGAACCACGTTGTGATGATG 57.512 40.909 0.00 0.00 35.23 3.07
2820 2954 4.338118 ACAAAAGAACCACGTTGTGATGAT 59.662 37.500 0.00 0.00 35.23 2.45
2821 2955 3.692101 ACAAAAGAACCACGTTGTGATGA 59.308 39.130 0.00 0.00 35.23 2.92
2822 2956 4.027572 ACAAAAGAACCACGTTGTGATG 57.972 40.909 0.00 0.00 35.23 3.07
2823 2957 6.205784 CAATACAAAAGAACCACGTTGTGAT 58.794 36.000 0.00 0.00 35.23 3.06
2824 2958 5.574082 CAATACAAAAGAACCACGTTGTGA 58.426 37.500 0.00 0.00 35.23 3.58
2825 2959 4.206200 GCAATACAAAAGAACCACGTTGTG 59.794 41.667 0.00 0.00 34.90 3.33
2826 2960 4.356289 GCAATACAAAAGAACCACGTTGT 58.644 39.130 0.00 0.00 36.30 3.32
2827 2961 3.733727 GGCAATACAAAAGAACCACGTTG 59.266 43.478 0.00 0.00 0.00 4.10
2828 2962 3.243602 GGGCAATACAAAAGAACCACGTT 60.244 43.478 0.00 0.00 0.00 3.99
2829 2963 2.295070 GGGCAATACAAAAGAACCACGT 59.705 45.455 0.00 0.00 0.00 4.49
2830 2964 2.556622 AGGGCAATACAAAAGAACCACG 59.443 45.455 0.00 0.00 0.00 4.94
2831 2965 3.572255 TGAGGGCAATACAAAAGAACCAC 59.428 43.478 0.00 0.00 0.00 4.16
2832 2966 3.838565 TGAGGGCAATACAAAAGAACCA 58.161 40.909 0.00 0.00 0.00 3.67
2833 2967 4.864704 TTGAGGGCAATACAAAAGAACC 57.135 40.909 0.00 0.00 0.00 3.62
2838 2972 4.615588 CCCTTTTGAGGGCAATACAAAA 57.384 40.909 0.00 0.00 42.99 2.44
2848 2982 8.807153 CGGGTCTATTTAGTCCCTTTTGAGGG 62.807 50.000 15.12 5.08 45.74 4.30
2849 2983 5.437946 GGGTCTATTTAGTCCCTTTTGAGG 58.562 45.833 11.35 0.00 44.88 3.86
2850 2984 5.105064 TCGGGTCTATTTAGTCCCTTTTGAG 60.105 44.000 15.12 2.58 45.74 3.02
2851 2985 4.778958 TCGGGTCTATTTAGTCCCTTTTGA 59.221 41.667 15.12 5.25 45.74 2.69
2852 2986 4.874396 GTCGGGTCTATTTAGTCCCTTTTG 59.126 45.833 15.12 3.41 45.74 2.44
2853 2987 4.533311 TGTCGGGTCTATTTAGTCCCTTTT 59.467 41.667 15.12 0.00 45.74 2.27
2854 2988 4.098894 TGTCGGGTCTATTTAGTCCCTTT 58.901 43.478 15.12 0.00 45.74 3.11
2855 2989 3.705072 CTGTCGGGTCTATTTAGTCCCTT 59.295 47.826 15.12 0.00 45.74 3.95
2856 2990 3.053095 TCTGTCGGGTCTATTTAGTCCCT 60.053 47.826 15.12 0.00 45.74 4.20
2857 2991 3.294214 TCTGTCGGGTCTATTTAGTCCC 58.706 50.000 9.19 9.19 44.86 4.46
2858 2992 4.996788 TTCTGTCGGGTCTATTTAGTCC 57.003 45.455 0.00 0.00 0.00 3.85
2859 2993 6.570692 TGATTTCTGTCGGGTCTATTTAGTC 58.429 40.000 0.00 0.00 0.00 2.59
2860 2994 6.540438 TGATTTCTGTCGGGTCTATTTAGT 57.460 37.500 0.00 0.00 0.00 2.24
2861 2995 9.542462 TTTATGATTTCTGTCGGGTCTATTTAG 57.458 33.333 0.00 0.00 0.00 1.85
2862 2996 9.542462 CTTTATGATTTCTGTCGGGTCTATTTA 57.458 33.333 0.00 0.00 0.00 1.40
2863 2997 8.047310 ACTTTATGATTTCTGTCGGGTCTATTT 58.953 33.333 0.00 0.00 0.00 1.40
2864 2998 7.495934 CACTTTATGATTTCTGTCGGGTCTATT 59.504 37.037 0.00 0.00 0.00 1.73
2865 2999 6.986817 CACTTTATGATTTCTGTCGGGTCTAT 59.013 38.462 0.00 0.00 0.00 1.98
2866 3000 6.153851 TCACTTTATGATTTCTGTCGGGTCTA 59.846 38.462 0.00 0.00 29.99 2.59
2867 3001 5.046591 TCACTTTATGATTTCTGTCGGGTCT 60.047 40.000 0.00 0.00 29.99 3.85
2868 3002 5.063564 GTCACTTTATGATTTCTGTCGGGTC 59.936 44.000 0.00 0.00 40.28 4.46
2869 3003 4.935808 GTCACTTTATGATTTCTGTCGGGT 59.064 41.667 0.00 0.00 40.28 5.28
2870 3004 4.935205 TGTCACTTTATGATTTCTGTCGGG 59.065 41.667 0.00 0.00 40.28 5.14
2871 3005 6.536582 AGATGTCACTTTATGATTTCTGTCGG 59.463 38.462 0.00 0.00 40.28 4.79
2872 3006 7.254252 GGAGATGTCACTTTATGATTTCTGTCG 60.254 40.741 0.00 0.00 40.28 4.35
2873 3007 7.768120 AGGAGATGTCACTTTATGATTTCTGTC 59.232 37.037 0.00 0.00 40.28 3.51
2874 3008 7.628234 AGGAGATGTCACTTTATGATTTCTGT 58.372 34.615 0.00 0.00 40.28 3.41
2875 3009 8.503458 AAGGAGATGTCACTTTATGATTTCTG 57.497 34.615 0.00 0.00 40.28 3.02
2878 3012 8.844244 GCATAAGGAGATGTCACTTTATGATTT 58.156 33.333 19.03 0.00 40.28 2.17
2879 3013 8.216423 AGCATAAGGAGATGTCACTTTATGATT 58.784 33.333 19.03 8.82 40.28 2.57
2880 3014 7.743749 AGCATAAGGAGATGTCACTTTATGAT 58.256 34.615 19.03 13.39 40.28 2.45
2881 3015 7.129457 AGCATAAGGAGATGTCACTTTATGA 57.871 36.000 19.03 0.00 33.79 2.15
2882 3016 6.988580 TGAGCATAAGGAGATGTCACTTTATG 59.011 38.462 13.84 13.84 0.00 1.90
2883 3017 7.129457 TGAGCATAAGGAGATGTCACTTTAT 57.871 36.000 0.00 0.00 0.00 1.40
2884 3018 6.544928 TGAGCATAAGGAGATGTCACTTTA 57.455 37.500 0.00 0.00 0.00 1.85
2885 3019 5.426689 TGAGCATAAGGAGATGTCACTTT 57.573 39.130 0.00 0.00 0.00 2.66
2886 3020 5.129980 TGATGAGCATAAGGAGATGTCACTT 59.870 40.000 0.00 0.00 0.00 3.16
2887 3021 4.652881 TGATGAGCATAAGGAGATGTCACT 59.347 41.667 0.00 0.00 0.00 3.41
2888 3022 4.953667 TGATGAGCATAAGGAGATGTCAC 58.046 43.478 0.00 0.00 0.00 3.67
2889 3023 5.820404 ATGATGAGCATAAGGAGATGTCA 57.180 39.130 0.00 0.00 34.82 3.58
2890 3024 9.881649 TTTATATGATGAGCATAAGGAGATGTC 57.118 33.333 0.00 0.00 42.45 3.06
2902 3036 9.066892 GGTGGAGTTTTATTTATATGATGAGCA 57.933 33.333 0.00 0.00 0.00 4.26
2903 3037 8.230486 CGGTGGAGTTTTATTTATATGATGAGC 58.770 37.037 0.00 0.00 0.00 4.26
2904 3038 9.273016 ACGGTGGAGTTTTATTTATATGATGAG 57.727 33.333 0.00 0.00 0.00 2.90
2907 3041 9.720769 CCTACGGTGGAGTTTTATTTATATGAT 57.279 33.333 0.00 0.00 0.00 2.45
2908 3042 8.707449 ACCTACGGTGGAGTTTTATTTATATGA 58.293 33.333 2.93 0.00 32.98 2.15
2909 3043 8.897872 ACCTACGGTGGAGTTTTATTTATATG 57.102 34.615 2.93 0.00 32.98 1.78
2926 3060 1.982938 GGAGCTCACCACCTACGGT 60.983 63.158 17.19 0.00 41.07 4.83
2927 3061 0.395311 TAGGAGCTCACCACCTACGG 60.395 60.000 17.19 0.00 35.52 4.02
2928 3062 1.025812 CTAGGAGCTCACCACCTACG 58.974 60.000 17.19 0.00 35.52 3.51
2929 3063 2.438800 TCTAGGAGCTCACCACCTAC 57.561 55.000 17.19 0.00 35.52 3.18
2930 3064 3.300388 CATTCTAGGAGCTCACCACCTA 58.700 50.000 17.19 7.00 35.52 3.08
2931 3065 2.114616 CATTCTAGGAGCTCACCACCT 58.885 52.381 17.19 6.06 37.76 4.00
2932 3066 1.139853 CCATTCTAGGAGCTCACCACC 59.860 57.143 17.19 0.00 0.00 4.61
2933 3067 2.111384 TCCATTCTAGGAGCTCACCAC 58.889 52.381 17.19 0.00 32.77 4.16
2934 3068 2.550277 TCCATTCTAGGAGCTCACCA 57.450 50.000 17.19 0.00 32.77 4.17
2935 3069 3.914426 TTTCCATTCTAGGAGCTCACC 57.086 47.619 17.19 0.00 39.25 4.02
2936 3070 5.028549 TCATTTCCATTCTAGGAGCTCAC 57.971 43.478 17.19 5.01 39.25 3.51
2937 3071 5.698741 TTCATTTCCATTCTAGGAGCTCA 57.301 39.130 17.19 0.00 39.25 4.26
2938 3072 6.118852 ACTTTCATTTCCATTCTAGGAGCTC 58.881 40.000 4.71 4.71 39.25 4.09
2939 3073 6.072199 ACTTTCATTTCCATTCTAGGAGCT 57.928 37.500 0.00 0.00 39.25 4.09
2940 3074 6.765915 AACTTTCATTTCCATTCTAGGAGC 57.234 37.500 0.00 0.00 39.25 4.70
2941 3075 7.543520 GCAAAACTTTCATTTCCATTCTAGGAG 59.456 37.037 0.00 0.00 39.25 3.69
2942 3076 7.015098 TGCAAAACTTTCATTTCCATTCTAGGA 59.985 33.333 0.00 0.00 35.41 2.94
2943 3077 7.116805 GTGCAAAACTTTCATTTCCATTCTAGG 59.883 37.037 0.00 0.00 0.00 3.02
2944 3078 7.652909 TGTGCAAAACTTTCATTTCCATTCTAG 59.347 33.333 0.00 0.00 0.00 2.43
2945 3079 7.495901 TGTGCAAAACTTTCATTTCCATTCTA 58.504 30.769 0.00 0.00 0.00 2.10
2946 3080 6.347696 TGTGCAAAACTTTCATTTCCATTCT 58.652 32.000 0.00 0.00 0.00 2.40
2947 3081 6.601741 TGTGCAAAACTTTCATTTCCATTC 57.398 33.333 0.00 0.00 0.00 2.67
2948 3082 6.998968 TTGTGCAAAACTTTCATTTCCATT 57.001 29.167 0.00 0.00 0.00 3.16
2949 3083 6.822676 TCTTTGTGCAAAACTTTCATTTCCAT 59.177 30.769 0.00 0.00 0.00 3.41
2950 3084 6.169094 TCTTTGTGCAAAACTTTCATTTCCA 58.831 32.000 0.00 0.00 0.00 3.53
2951 3085 6.660887 TCTTTGTGCAAAACTTTCATTTCC 57.339 33.333 0.00 0.00 0.00 3.13
2969 3103 6.939132 ATCTCCTGCTCACAAATATCTTTG 57.061 37.500 2.24 2.24 45.92 2.77
2970 3104 7.714377 CAGTATCTCCTGCTCACAAATATCTTT 59.286 37.037 0.00 0.00 0.00 2.52
2971 3105 7.070447 TCAGTATCTCCTGCTCACAAATATCTT 59.930 37.037 0.00 0.00 32.32 2.40
2972 3106 6.552725 TCAGTATCTCCTGCTCACAAATATCT 59.447 38.462 0.00 0.00 32.32 1.98
2973 3107 6.753180 TCAGTATCTCCTGCTCACAAATATC 58.247 40.000 0.00 0.00 32.32 1.63
2974 3108 6.737720 TCAGTATCTCCTGCTCACAAATAT 57.262 37.500 0.00 0.00 32.32 1.28
2975 3109 6.515696 CGATCAGTATCTCCTGCTCACAAATA 60.516 42.308 0.00 0.00 29.99 1.40
2976 3110 5.609423 GATCAGTATCTCCTGCTCACAAAT 58.391 41.667 0.00 0.00 29.99 2.32
2977 3111 4.440663 CGATCAGTATCTCCTGCTCACAAA 60.441 45.833 0.00 0.00 29.99 2.83
2978 3112 3.067320 CGATCAGTATCTCCTGCTCACAA 59.933 47.826 0.00 0.00 29.99 3.33
2979 3113 2.620585 CGATCAGTATCTCCTGCTCACA 59.379 50.000 0.00 0.00 29.99 3.58
2980 3114 2.606795 GCGATCAGTATCTCCTGCTCAC 60.607 54.545 0.00 0.00 29.99 3.51
2981 3115 1.611006 GCGATCAGTATCTCCTGCTCA 59.389 52.381 0.00 0.00 29.99 4.26
2982 3116 1.611006 TGCGATCAGTATCTCCTGCTC 59.389 52.381 0.00 0.00 32.32 4.26
2983 3117 1.697284 TGCGATCAGTATCTCCTGCT 58.303 50.000 0.00 0.00 32.32 4.24
2984 3118 2.735663 CAATGCGATCAGTATCTCCTGC 59.264 50.000 0.00 0.00 32.32 4.85
2985 3119 3.244009 ACCAATGCGATCAGTATCTCCTG 60.244 47.826 0.00 0.00 0.00 3.86
2986 3120 2.968574 ACCAATGCGATCAGTATCTCCT 59.031 45.455 0.00 0.00 0.00 3.69
2987 3121 3.321497 GACCAATGCGATCAGTATCTCC 58.679 50.000 0.00 0.00 0.00 3.71
2988 3122 2.983136 CGACCAATGCGATCAGTATCTC 59.017 50.000 0.00 0.00 0.00 2.75
2989 3123 2.362397 ACGACCAATGCGATCAGTATCT 59.638 45.455 0.00 0.00 0.00 1.98
2990 3124 2.472861 CACGACCAATGCGATCAGTATC 59.527 50.000 0.00 0.00 0.00 2.24
2991 3125 2.473816 CACGACCAATGCGATCAGTAT 58.526 47.619 0.00 0.00 0.00 2.12
2992 3126 1.470805 CCACGACCAATGCGATCAGTA 60.471 52.381 0.00 0.00 0.00 2.74
2993 3127 0.740868 CCACGACCAATGCGATCAGT 60.741 55.000 0.00 0.00 0.00 3.41
2994 3128 0.460109 TCCACGACCAATGCGATCAG 60.460 55.000 0.00 0.00 0.00 2.90
2995 3129 0.460109 CTCCACGACCAATGCGATCA 60.460 55.000 0.00 0.00 0.00 2.92
2996 3130 1.154205 CCTCCACGACCAATGCGATC 61.154 60.000 0.00 0.00 0.00 3.69
2997 3131 1.153369 CCTCCACGACCAATGCGAT 60.153 57.895 0.00 0.00 0.00 4.58
2998 3132 1.822114 TTCCTCCACGACCAATGCGA 61.822 55.000 0.00 0.00 0.00 5.10
2999 3133 0.953471 TTTCCTCCACGACCAATGCG 60.953 55.000 0.00 0.00 0.00 4.73
3000 3134 0.804989 CTTTCCTCCACGACCAATGC 59.195 55.000 0.00 0.00 0.00 3.56
3001 3135 0.804989 GCTTTCCTCCACGACCAATG 59.195 55.000 0.00 0.00 0.00 2.82
3002 3136 0.673644 CGCTTTCCTCCACGACCAAT 60.674 55.000 0.00 0.00 0.00 3.16
3003 3137 1.301401 CGCTTTCCTCCACGACCAA 60.301 57.895 0.00 0.00 0.00 3.67
3004 3138 2.342279 CGCTTTCCTCCACGACCA 59.658 61.111 0.00 0.00 0.00 4.02
3005 3139 1.880819 TACCGCTTTCCTCCACGACC 61.881 60.000 0.00 0.00 0.00 4.79
3006 3140 0.037975 TTACCGCTTTCCTCCACGAC 60.038 55.000 0.00 0.00 0.00 4.34
3007 3141 0.245539 CTTACCGCTTTCCTCCACGA 59.754 55.000 0.00 0.00 0.00 4.35
3008 3142 0.739813 CCTTACCGCTTTCCTCCACG 60.740 60.000 0.00 0.00 0.00 4.94
3009 3143 1.025113 GCCTTACCGCTTTCCTCCAC 61.025 60.000 0.00 0.00 0.00 4.02
3010 3144 1.298667 GCCTTACCGCTTTCCTCCA 59.701 57.895 0.00 0.00 0.00 3.86
3011 3145 1.451567 GGCCTTACCGCTTTCCTCC 60.452 63.158 0.00 0.00 0.00 4.30
3012 3146 0.744771 CAGGCCTTACCGCTTTCCTC 60.745 60.000 0.00 0.00 46.52 3.71
3013 3147 1.299976 CAGGCCTTACCGCTTTCCT 59.700 57.895 0.00 0.00 46.52 3.36
3014 3148 2.407428 GCAGGCCTTACCGCTTTCC 61.407 63.158 0.00 0.00 46.52 3.13
3015 3149 2.407428 GGCAGGCCTTACCGCTTTC 61.407 63.158 0.00 0.00 46.52 2.62
3016 3150 2.361230 GGCAGGCCTTACCGCTTT 60.361 61.111 0.00 0.00 46.52 3.51
3017 3151 4.778143 CGGCAGGCCTTACCGCTT 62.778 66.667 26.57 0.00 46.52 4.68
3021 3155 2.125106 CAGACGGCAGGCCTTACC 60.125 66.667 0.00 7.09 39.61 2.85
3022 3156 1.153549 CTCAGACGGCAGGCCTTAC 60.154 63.158 0.00 0.00 0.00 2.34
3023 3157 3.019003 GCTCAGACGGCAGGCCTTA 62.019 63.158 0.00 0.00 0.00 2.69
3024 3158 4.400961 GCTCAGACGGCAGGCCTT 62.401 66.667 0.00 0.00 0.00 4.35
3027 3161 3.984193 ATTGGCTCAGACGGCAGGC 62.984 63.158 0.00 0.00 40.74 4.85
3028 3162 1.372087 GAATTGGCTCAGACGGCAGG 61.372 60.000 0.00 0.00 40.74 4.85
3029 3163 0.674581 TGAATTGGCTCAGACGGCAG 60.675 55.000 0.00 0.00 40.74 4.85
3030 3164 0.035152 ATGAATTGGCTCAGACGGCA 60.035 50.000 0.00 0.00 37.72 5.69
3031 3165 0.379669 CATGAATTGGCTCAGACGGC 59.620 55.000 0.00 0.00 0.00 5.68
3032 3166 2.028420 TCATGAATTGGCTCAGACGG 57.972 50.000 0.00 0.00 0.00 4.79
3033 3167 4.424061 TTTTCATGAATTGGCTCAGACG 57.576 40.909 9.40 0.00 0.00 4.18
3034 3168 6.205101 AGATTTTCATGAATTGGCTCAGAC 57.795 37.500 9.40 0.00 0.00 3.51
3035 3169 6.434965 TGAAGATTTTCATGAATTGGCTCAGA 59.565 34.615 9.40 0.00 38.37 3.27
3036 3170 6.627243 TGAAGATTTTCATGAATTGGCTCAG 58.373 36.000 9.40 0.00 38.37 3.35
3037 3171 6.593268 TGAAGATTTTCATGAATTGGCTCA 57.407 33.333 9.40 7.37 38.37 4.26
3049 3183 6.406177 GCAGCTGGGATTTATGAAGATTTTCA 60.406 38.462 17.12 0.54 46.67 2.69
3050 3184 5.981915 GCAGCTGGGATTTATGAAGATTTTC 59.018 40.000 17.12 0.00 0.00 2.29
3051 3185 5.659971 AGCAGCTGGGATTTATGAAGATTTT 59.340 36.000 17.12 0.00 0.00 1.82
3052 3186 5.206587 AGCAGCTGGGATTTATGAAGATTT 58.793 37.500 17.12 0.00 0.00 2.17
3053 3187 4.801164 AGCAGCTGGGATTTATGAAGATT 58.199 39.130 17.12 0.00 0.00 2.40
3054 3188 4.104420 AGAGCAGCTGGGATTTATGAAGAT 59.896 41.667 17.12 0.00 0.00 2.40
3055 3189 3.457380 AGAGCAGCTGGGATTTATGAAGA 59.543 43.478 17.12 0.00 0.00 2.87
3056 3190 3.818180 AGAGCAGCTGGGATTTATGAAG 58.182 45.455 17.12 0.00 0.00 3.02
3057 3191 3.939740 AGAGCAGCTGGGATTTATGAA 57.060 42.857 17.12 0.00 0.00 2.57
3058 3192 3.939740 AAGAGCAGCTGGGATTTATGA 57.060 42.857 17.12 0.00 0.00 2.15
3059 3193 5.371526 TCTTAAGAGCAGCTGGGATTTATG 58.628 41.667 17.12 0.00 0.00 1.90
3060 3194 5.636903 TCTTAAGAGCAGCTGGGATTTAT 57.363 39.130 17.12 0.00 0.00 1.40
3061 3195 5.435686 TTCTTAAGAGCAGCTGGGATTTA 57.564 39.130 17.12 0.00 0.00 1.40
3062 3196 4.307032 TTCTTAAGAGCAGCTGGGATTT 57.693 40.909 17.12 0.00 0.00 2.17
3063 3197 4.307032 TTTCTTAAGAGCAGCTGGGATT 57.693 40.909 17.12 0.00 0.00 3.01
3064 3198 4.459330 GATTTCTTAAGAGCAGCTGGGAT 58.541 43.478 17.12 0.00 0.00 3.85
3065 3199 3.370953 GGATTTCTTAAGAGCAGCTGGGA 60.371 47.826 17.12 0.00 0.00 4.37
3066 3200 2.948315 GGATTTCTTAAGAGCAGCTGGG 59.052 50.000 17.12 0.00 0.00 4.45
3067 3201 3.876320 GAGGATTTCTTAAGAGCAGCTGG 59.124 47.826 17.12 0.00 0.00 4.85
3068 3202 3.555139 CGAGGATTTCTTAAGAGCAGCTG 59.445 47.826 10.11 10.11 0.00 4.24
3069 3203 3.431486 CCGAGGATTTCTTAAGAGCAGCT 60.431 47.826 5.12 0.00 0.00 4.24
3070 3204 2.869192 CCGAGGATTTCTTAAGAGCAGC 59.131 50.000 5.12 0.00 0.00 5.25
3071 3205 4.392921 TCCGAGGATTTCTTAAGAGCAG 57.607 45.455 5.12 0.00 0.00 4.24
3072 3206 4.383118 CCTTCCGAGGATTTCTTAAGAGCA 60.383 45.833 5.12 0.00 46.74 4.26
3073 3207 4.123506 CCTTCCGAGGATTTCTTAAGAGC 58.876 47.826 5.12 0.00 46.74 4.09
3074 3208 4.123506 GCCTTCCGAGGATTTCTTAAGAG 58.876 47.826 5.12 0.00 46.74 2.85
3075 3209 3.118371 GGCCTTCCGAGGATTTCTTAAGA 60.118 47.826 0.00 0.00 46.74 2.10
3076 3210 3.206964 GGCCTTCCGAGGATTTCTTAAG 58.793 50.000 0.00 0.00 46.74 1.85
3077 3211 2.574369 TGGCCTTCCGAGGATTTCTTAA 59.426 45.455 3.32 0.00 46.74 1.85
3078 3212 2.193127 TGGCCTTCCGAGGATTTCTTA 58.807 47.619 3.32 0.00 46.74 2.10
3079 3213 0.991920 TGGCCTTCCGAGGATTTCTT 59.008 50.000 3.32 0.00 46.74 2.52
3080 3214 1.216990 ATGGCCTTCCGAGGATTTCT 58.783 50.000 3.32 0.00 46.74 2.52
3081 3215 1.950216 GAATGGCCTTCCGAGGATTTC 59.050 52.381 3.32 0.00 46.74 2.17
3082 3216 1.284785 TGAATGGCCTTCCGAGGATTT 59.715 47.619 3.32 0.00 46.74 2.17
3083 3217 0.918983 TGAATGGCCTTCCGAGGATT 59.081 50.000 3.32 0.00 46.74 3.01
3084 3218 0.181350 GTGAATGGCCTTCCGAGGAT 59.819 55.000 3.32 0.00 46.74 3.24
3085 3219 1.198094 TGTGAATGGCCTTCCGAGGA 61.198 55.000 3.32 0.00 46.74 3.71
3086 3220 0.107017 ATGTGAATGGCCTTCCGAGG 60.107 55.000 3.32 0.00 46.50 4.63
3087 3221 1.019673 CATGTGAATGGCCTTCCGAG 58.980 55.000 3.32 0.00 32.49 4.63
3088 3222 1.031571 GCATGTGAATGGCCTTCCGA 61.032 55.000 3.32 0.00 32.49 4.55
3089 3223 1.434696 GCATGTGAATGGCCTTCCG 59.565 57.895 3.32 0.00 32.49 4.30
3090 3224 1.818555 GGCATGTGAATGGCCTTCC 59.181 57.895 3.32 1.05 44.32 3.46
3095 3229 1.139520 GTTCGGGCATGTGAATGGC 59.860 57.895 3.82 3.82 45.18 4.40
3096 3230 0.680921 AGGTTCGGGCATGTGAATGG 60.681 55.000 0.00 0.00 0.00 3.16
3097 3231 0.734889 GAGGTTCGGGCATGTGAATG 59.265 55.000 0.00 0.00 0.00 2.67
3098 3232 0.394352 GGAGGTTCGGGCATGTGAAT 60.394 55.000 0.00 0.00 0.00 2.57
3099 3233 1.002624 GGAGGTTCGGGCATGTGAA 60.003 57.895 0.00 0.00 0.00 3.18
3100 3234 2.668632 GGAGGTTCGGGCATGTGA 59.331 61.111 0.00 0.00 0.00 3.58
3101 3235 2.819595 CGGAGGTTCGGGCATGTG 60.820 66.667 0.00 0.00 0.00 3.21
3102 3236 4.778143 GCGGAGGTTCGGGCATGT 62.778 66.667 0.00 0.00 0.00 3.21
3118 3252 0.319555 TATAATCAGCCTCGCACCGC 60.320 55.000 0.00 0.00 0.00 5.68
3119 3253 1.000163 AGTATAATCAGCCTCGCACCG 60.000 52.381 0.00 0.00 0.00 4.94
3120 3254 2.821991 AGTATAATCAGCCTCGCACC 57.178 50.000 0.00 0.00 0.00 5.01
3121 3255 4.238514 CCTAAGTATAATCAGCCTCGCAC 58.761 47.826 0.00 0.00 0.00 5.34
3122 3256 3.306088 GCCTAAGTATAATCAGCCTCGCA 60.306 47.826 0.00 0.00 0.00 5.10
3123 3257 3.056465 AGCCTAAGTATAATCAGCCTCGC 60.056 47.826 0.00 0.00 0.00 5.03
3124 3258 4.792521 AGCCTAAGTATAATCAGCCTCG 57.207 45.455 0.00 0.00 0.00 4.63
3125 3259 5.164954 CGAAGCCTAAGTATAATCAGCCTC 58.835 45.833 0.00 0.00 0.00 4.70
3126 3260 4.021016 CCGAAGCCTAAGTATAATCAGCCT 60.021 45.833 0.00 0.00 0.00 4.58
3127 3261 4.246458 CCGAAGCCTAAGTATAATCAGCC 58.754 47.826 0.00 0.00 0.00 4.85
3128 3262 4.884247 ACCGAAGCCTAAGTATAATCAGC 58.116 43.478 0.00 0.00 0.00 4.26
3129 3263 6.208994 AGGTACCGAAGCCTAAGTATAATCAG 59.791 42.308 6.18 0.00 32.49 2.90
3130 3264 6.073314 AGGTACCGAAGCCTAAGTATAATCA 58.927 40.000 6.18 0.00 32.49 2.57
3131 3265 6.587206 AGGTACCGAAGCCTAAGTATAATC 57.413 41.667 6.18 0.00 32.49 1.75
3132 3266 6.990908 AAGGTACCGAAGCCTAAGTATAAT 57.009 37.500 6.18 0.00 34.15 1.28
3133 3267 6.796785 AAAGGTACCGAAGCCTAAGTATAA 57.203 37.500 6.18 0.00 34.15 0.98
3134 3268 6.183360 GGAAAAGGTACCGAAGCCTAAGTATA 60.183 42.308 6.18 0.00 34.15 1.47
3135 3269 5.396101 GGAAAAGGTACCGAAGCCTAAGTAT 60.396 44.000 6.18 0.00 34.15 2.12
3136 3270 4.081476 GGAAAAGGTACCGAAGCCTAAGTA 60.081 45.833 6.18 0.00 34.15 2.24
3137 3271 3.307269 GGAAAAGGTACCGAAGCCTAAGT 60.307 47.826 6.18 0.00 34.15 2.24
3138 3272 3.055312 AGGAAAAGGTACCGAAGCCTAAG 60.055 47.826 15.04 0.00 34.15 2.18
3139 3273 2.908351 AGGAAAAGGTACCGAAGCCTAA 59.092 45.455 15.04 0.00 34.15 2.69
3140 3274 2.543635 AGGAAAAGGTACCGAAGCCTA 58.456 47.619 15.04 0.00 34.15 3.93
3141 3275 1.359168 AGGAAAAGGTACCGAAGCCT 58.641 50.000 6.18 9.75 36.51 4.58
3142 3276 2.082231 GAAGGAAAAGGTACCGAAGCC 58.918 52.381 6.18 7.50 0.00 4.35
3143 3277 1.730612 CGAAGGAAAAGGTACCGAAGC 59.269 52.381 6.18 0.00 0.00 3.86
3144 3278 3.251571 CTCGAAGGAAAAGGTACCGAAG 58.748 50.000 6.18 0.00 0.00 3.79
3145 3279 2.611224 GCTCGAAGGAAAAGGTACCGAA 60.611 50.000 6.18 0.00 0.00 4.30
3146 3280 1.067354 GCTCGAAGGAAAAGGTACCGA 60.067 52.381 6.18 0.00 0.00 4.69
3147 3281 1.067071 AGCTCGAAGGAAAAGGTACCG 60.067 52.381 6.18 0.00 0.00 4.02
3148 3282 2.764439 AGCTCGAAGGAAAAGGTACC 57.236 50.000 2.73 2.73 0.00 3.34
3149 3283 3.188667 CCAAAGCTCGAAGGAAAAGGTAC 59.811 47.826 0.00 0.00 0.00 3.34
3150 3284 3.408634 CCAAAGCTCGAAGGAAAAGGTA 58.591 45.455 0.00 0.00 0.00 3.08
3151 3285 2.230660 CCAAAGCTCGAAGGAAAAGGT 58.769 47.619 0.00 0.00 0.00 3.50
3152 3286 1.068264 GCCAAAGCTCGAAGGAAAAGG 60.068 52.381 0.00 0.00 35.50 3.11
3153 3287 2.338140 GCCAAAGCTCGAAGGAAAAG 57.662 50.000 0.00 0.00 35.50 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.