Multiple sequence alignment - TraesCS3A01G335800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G335800 chr3A 100.000 6757 0 0 1 6757 582287392 582280636 0.000000e+00 12478.0
1 TraesCS3A01G335800 chr3A 82.508 2241 247 76 4178 6369 581847512 581845368 0.000000e+00 1832.0
2 TraesCS3A01G335800 chr3A 91.419 1247 90 12 2742 3976 581848871 581847630 0.000000e+00 1694.0
3 TraesCS3A01G335800 chr3A 82.475 1729 217 46 2000 3695 581841974 581840299 0.000000e+00 1435.0
4 TraesCS3A01G335800 chr3A 83.505 1067 153 17 2909 3964 581615899 581614845 0.000000e+00 974.0
5 TraesCS3A01G335800 chr3A 79.483 619 98 16 1987 2596 581396850 581396252 4.880000e-111 412.0
6 TraesCS3A01G335800 chr3A 88.496 339 35 4 1633 1971 581850016 581849682 2.270000e-109 407.0
7 TraesCS3A01G335800 chr3A 87.826 345 34 6 1633 1971 581842414 581842072 1.370000e-106 398.0
8 TraesCS3A01G335800 chr3A 85.874 269 31 4 3716 3978 581840177 581839910 5.160000e-71 279.0
9 TraesCS3A01G335800 chr3D 97.258 1386 33 3 3833 5213 441389015 441387630 0.000000e+00 2344.0
10 TraesCS3A01G335800 chr3D 97.531 1053 16 5 1897 2949 441423474 441422432 0.000000e+00 1792.0
11 TraesCS3A01G335800 chr3D 91.583 1295 70 16 5208 6501 441371978 441370722 0.000000e+00 1751.0
12 TraesCS3A01G335800 chr3D 91.680 1250 87 12 2740 3977 441260942 441259698 0.000000e+00 1716.0
13 TraesCS3A01G335800 chr3D 84.161 1812 200 42 4287 6057 441259523 441257758 0.000000e+00 1676.0
14 TraesCS3A01G335800 chr3D 97.143 945 25 2 1 944 390260896 390261839 0.000000e+00 1594.0
15 TraesCS3A01G335800 chr3D 97.140 944 25 1 1 944 362368429 362367488 0.000000e+00 1592.0
16 TraesCS3A01G335800 chr3D 97.339 902 22 2 2947 3848 441403433 441402534 0.000000e+00 1531.0
17 TraesCS3A01G335800 chr3D 83.634 886 126 13 3089 3964 441185371 441184495 0.000000e+00 815.0
18 TraesCS3A01G335800 chr3D 83.638 874 122 17 4772 5628 441251505 441250636 0.000000e+00 802.0
19 TraesCS3A01G335800 chr3D 96.436 477 16 1 942 1417 441427783 441427307 0.000000e+00 785.0
20 TraesCS3A01G335800 chr3D 82.890 789 91 19 1985 2750 441261778 441261011 0.000000e+00 669.0
21 TraesCS3A01G335800 chr3D 83.243 740 101 17 4772 5494 441151248 441150515 0.000000e+00 658.0
22 TraesCS3A01G335800 chr3D 85.435 563 63 8 1984 2543 441254230 441253684 9.830000e-158 568.0
23 TraesCS3A01G335800 chr3D 83.897 503 59 11 1483 1971 441262367 441261873 1.720000e-125 460.0
24 TraesCS3A01G335800 chr3D 98.450 258 4 0 1401 1658 441425698 441425441 7.990000e-124 455.0
25 TraesCS3A01G335800 chr3D 87.536 345 35 6 1633 1971 441254660 441254318 6.350000e-105 392.0
26 TraesCS3A01G335800 chr3D 95.425 153 7 0 4026 4178 322435444 322435292 1.880000e-60 244.0
27 TraesCS3A01G335800 chr3D 81.395 301 43 2 940 1239 441156138 441155850 4.070000e-57 233.0
28 TraesCS3A01G335800 chr3D 95.238 42 2 0 1439 1480 441425616 441425575 4.370000e-07 67.6
29 TraesCS3A01G335800 chr3B 84.922 1857 222 31 1985 3804 578775098 578773263 0.000000e+00 1825.0
30 TraesCS3A01G335800 chr3B 85.336 1739 185 34 4178 5887 578809548 578807851 0.000000e+00 1735.0
31 TraesCS3A01G335800 chr3B 90.160 1250 95 21 2743 3977 578810893 578809657 0.000000e+00 1602.0
32 TraesCS3A01G335800 chr3B 81.361 1910 229 67 4501 6368 578768826 578767002 0.000000e+00 1437.0
33 TraesCS3A01G335800 chr3B 83.333 918 133 15 2785 3692 578614823 578613916 0.000000e+00 830.0
34 TraesCS3A01G335800 chr3B 79.245 1272 199 43 2710 3959 578605623 578604395 0.000000e+00 826.0
35 TraesCS3A01G335800 chr3B 83.746 849 116 16 4798 5628 578760915 578760071 0.000000e+00 784.0
36 TraesCS3A01G335800 chr3B 83.249 788 90 24 1985 2750 578811727 578810960 0.000000e+00 686.0
37 TraesCS3A01G335800 chr3B 91.028 457 31 6 2093 2543 578615912 578615460 5.790000e-170 608.0
38 TraesCS3A01G335800 chr3B 89.509 448 43 3 2099 2543 578763566 578763120 1.270000e-156 564.0
39 TraesCS3A01G335800 chr3B 84.064 502 58 11 1483 1971 578812315 578811823 1.330000e-126 464.0
40 TraesCS3A01G335800 chr3B 83.333 504 60 14 1482 1971 578775801 578775308 1.730000e-120 444.0
41 TraesCS3A01G335800 chr3B 87.228 368 33 7 1608 1971 578764123 578763766 2.270000e-109 407.0
42 TraesCS3A01G335800 chr3B 85.629 334 41 4 1651 1980 578616353 578616023 1.800000e-90 344.0
43 TraesCS3A01G335800 chr3B 95.425 153 7 0 4026 4178 396272031 396271879 1.880000e-60 244.0
44 TraesCS3A01G335800 chr3B 93.252 163 8 2 4026 4185 328715598 328715436 3.150000e-58 237.0
45 TraesCS3A01G335800 chr3B 83.590 195 23 4 1261 1454 578812486 578812300 2.500000e-39 174.0
46 TraesCS3A01G335800 chr5D 97.246 944 25 1 1 944 451273127 451272185 0.000000e+00 1598.0
47 TraesCS3A01G335800 chr7D 97.140 944 26 1 1 944 506607983 506608925 0.000000e+00 1592.0
48 TraesCS3A01G335800 chr7D 97.140 944 25 1 1 944 615640913 615639972 0.000000e+00 1592.0
49 TraesCS3A01G335800 chr7D 97.034 944 28 0 1 944 178327931 178326988 0.000000e+00 1589.0
50 TraesCS3A01G335800 chr4D 97.140 944 26 1 1 944 382666604 382667546 0.000000e+00 1592.0
51 TraesCS3A01G335800 chr4D 94.479 163 8 1 4023 4184 74079507 74079345 4.050000e-62 250.0
52 TraesCS3A01G335800 chr2D 97.140 944 24 2 1 944 95542091 95541151 0.000000e+00 1591.0
53 TraesCS3A01G335800 chr2D 79.305 1295 214 42 4794 6060 633683006 633684274 0.000000e+00 857.0
54 TraesCS3A01G335800 chr2D 94.231 156 9 0 4026 4181 79056319 79056164 8.760000e-59 239.0
55 TraesCS3A01G335800 chr1D 97.043 947 25 1 1 944 70532294 70533240 0.000000e+00 1591.0
56 TraesCS3A01G335800 chr1D 92.683 164 10 2 4026 4188 7349704 7349866 1.130000e-57 235.0
57 TraesCS3A01G335800 chr6B 85.507 1035 99 27 1511 2518 696333798 696332788 0.000000e+00 1033.0
58 TraesCS3A01G335800 chr6B 83.258 442 51 10 942 1361 696334502 696334062 1.060000e-102 385.0
59 TraesCS3A01G335800 chr6A 80.653 1163 189 25 4825 5966 861585 860438 0.000000e+00 869.0
60 TraesCS3A01G335800 chr6A 93.130 131 9 0 6627 6757 264058430 264058300 6.920000e-45 193.0
61 TraesCS3A01G335800 chr6A 92.366 131 10 0 6627 6757 427602014 427601884 3.220000e-43 187.0
62 TraesCS3A01G335800 chr6A 92.366 131 10 0 6627 6757 548492222 548492352 3.220000e-43 187.0
63 TraesCS3A01G335800 chr6A 91.603 131 11 0 6627 6757 303003857 303003727 1.500000e-41 182.0
64 TraesCS3A01G335800 chr6D 81.170 1094 167 30 4822 5891 2073154 2074232 0.000000e+00 843.0
65 TraesCS3A01G335800 chr6D 82.051 78 13 1 1406 1483 2031721 2031797 1.570000e-06 65.8
66 TraesCS3A01G335800 chr4B 94.872 156 7 1 4023 4178 146469370 146469216 6.770000e-60 243.0
67 TraesCS3A01G335800 chr4A 94.839 155 8 0 4025 4179 460230802 460230648 6.770000e-60 243.0
68 TraesCS3A01G335800 chr5A 93.893 131 8 0 6627 6757 269441253 269441123 1.490000e-46 198.0
69 TraesCS3A01G335800 chr5A 93.893 131 8 0 6627 6757 352280463 352280333 1.490000e-46 198.0
70 TraesCS3A01G335800 chr7A 93.130 131 9 0 6627 6757 384807417 384807547 6.920000e-45 193.0
71 TraesCS3A01G335800 chr2A 93.130 131 9 0 6627 6757 103164466 103164336 6.920000e-45 193.0
72 TraesCS3A01G335800 chr2A 92.366 131 10 0 6627 6757 114237209 114237339 3.220000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G335800 chr3A 582280636 582287392 6756 True 12478.000000 12478 100.000000 1 6757 1 chr3A.!!$R3 6756
1 TraesCS3A01G335800 chr3A 581839910 581850016 10106 True 1007.500000 1832 86.433000 1633 6369 6 chr3A.!!$R4 4736
2 TraesCS3A01G335800 chr3A 581614845 581615899 1054 True 974.000000 974 83.505000 2909 3964 1 chr3A.!!$R2 1055
3 TraesCS3A01G335800 chr3A 581396252 581396850 598 True 412.000000 412 79.483000 1987 2596 1 chr3A.!!$R1 609
4 TraesCS3A01G335800 chr3D 441387630 441389015 1385 True 2344.000000 2344 97.258000 3833 5213 1 chr3D.!!$R7 1380
5 TraesCS3A01G335800 chr3D 441370722 441371978 1256 True 1751.000000 1751 91.583000 5208 6501 1 chr3D.!!$R6 1293
6 TraesCS3A01G335800 chr3D 390260896 390261839 943 False 1594.000000 1594 97.143000 1 944 1 chr3D.!!$F1 943
7 TraesCS3A01G335800 chr3D 362367488 362368429 941 True 1592.000000 1592 97.140000 1 944 1 chr3D.!!$R2 943
8 TraesCS3A01G335800 chr3D 441402534 441403433 899 True 1531.000000 1531 97.339000 2947 3848 1 chr3D.!!$R8 901
9 TraesCS3A01G335800 chr3D 441250636 441262367 11731 True 897.571429 1716 85.605286 1483 6057 7 chr3D.!!$R9 4574
10 TraesCS3A01G335800 chr3D 441184495 441185371 876 True 815.000000 815 83.634000 3089 3964 1 chr3D.!!$R5 875
11 TraesCS3A01G335800 chr3D 441422432 441427783 5351 True 774.900000 1792 96.913750 942 2949 4 chr3D.!!$R10 2007
12 TraesCS3A01G335800 chr3D 441150515 441151248 733 True 658.000000 658 83.243000 4772 5494 1 chr3D.!!$R3 722
13 TraesCS3A01G335800 chr3B 578773263 578775801 2538 True 1134.500000 1825 84.127500 1482 3804 2 chr3B.!!$R6 2322
14 TraesCS3A01G335800 chr3B 578807851 578812486 4635 True 932.200000 1735 85.279800 1261 5887 5 chr3B.!!$R7 4626
15 TraesCS3A01G335800 chr3B 578604395 578605623 1228 True 826.000000 826 79.245000 2710 3959 1 chr3B.!!$R3 1249
16 TraesCS3A01G335800 chr3B 578760071 578768826 8755 True 798.000000 1437 85.461000 1608 6368 4 chr3B.!!$R5 4760
17 TraesCS3A01G335800 chr3B 578613916 578616353 2437 True 594.000000 830 86.663333 1651 3692 3 chr3B.!!$R4 2041
18 TraesCS3A01G335800 chr5D 451272185 451273127 942 True 1598.000000 1598 97.246000 1 944 1 chr5D.!!$R1 943
19 TraesCS3A01G335800 chr7D 506607983 506608925 942 False 1592.000000 1592 97.140000 1 944 1 chr7D.!!$F1 943
20 TraesCS3A01G335800 chr7D 615639972 615640913 941 True 1592.000000 1592 97.140000 1 944 1 chr7D.!!$R2 943
21 TraesCS3A01G335800 chr7D 178326988 178327931 943 True 1589.000000 1589 97.034000 1 944 1 chr7D.!!$R1 943
22 TraesCS3A01G335800 chr4D 382666604 382667546 942 False 1592.000000 1592 97.140000 1 944 1 chr4D.!!$F1 943
23 TraesCS3A01G335800 chr2D 95541151 95542091 940 True 1591.000000 1591 97.140000 1 944 1 chr2D.!!$R2 943
24 TraesCS3A01G335800 chr2D 633683006 633684274 1268 False 857.000000 857 79.305000 4794 6060 1 chr2D.!!$F1 1266
25 TraesCS3A01G335800 chr1D 70532294 70533240 946 False 1591.000000 1591 97.043000 1 944 1 chr1D.!!$F2 943
26 TraesCS3A01G335800 chr6B 696332788 696334502 1714 True 709.000000 1033 84.382500 942 2518 2 chr6B.!!$R1 1576
27 TraesCS3A01G335800 chr6A 860438 861585 1147 True 869.000000 869 80.653000 4825 5966 1 chr6A.!!$R1 1141
28 TraesCS3A01G335800 chr6D 2073154 2074232 1078 False 843.000000 843 81.170000 4822 5891 1 chr6D.!!$F2 1069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 2.230660 GCTCTTGGCTGTACCTTTTGT 58.769 47.619 0.00 0.00 40.22 2.83 F
1015 1022 1.153978 CGCCGACAATTTGCTGCAT 60.154 52.632 1.84 0.00 0.00 3.96 F
1068 1076 0.036164 ACTTGTATGACAGCGGGCAA 59.964 50.000 0.00 0.00 0.00 4.52 F
1882 5589 2.292267 CCAGAATCCGAGGATTGTTGG 58.708 52.381 20.86 20.92 43.98 3.77 F
2738 15094 1.202627 GCCACATTTTTCCAGCACCAA 60.203 47.619 0.00 0.00 0.00 3.67 F
3654 16161 2.535984 GACATCAATAGCGGAGTCAACG 59.464 50.000 0.00 0.00 0.00 4.10 F
5050 17987 1.067283 CACAGAGATGTCAAGACCGCT 60.067 52.381 0.00 0.00 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1049 1057 0.036164 TTGCCCGCTGTCATACAAGT 59.964 50.000 0.00 0.00 0.00 3.16 R
2724 15080 1.739049 CGGCTTGGTGCTGGAAAAA 59.261 52.632 0.00 0.00 44.06 1.94 R
2738 15094 4.421515 AATGAGGCTGCTGCGGCT 62.422 61.111 30.31 23.36 43.13 5.52 R
3614 16121 3.585289 TGTCTCCATAAGCACCTTTACCA 59.415 43.478 0.00 0.00 0.00 3.25 R
4003 16832 2.548493 GCACGTAGGTGGTTTCCAAGTA 60.548 50.000 16.75 0.00 44.54 2.24 R
5242 18179 0.685458 GGGGCTTGCCAGTGATGATT 60.685 55.000 14.04 0.00 0.00 2.57 R
6649 20636 0.032912 TTCATGCCATGCCCATCAGT 60.033 50.000 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 6.655078 ACCATCACTCTGCAACTTATTTTT 57.345 33.333 0.00 0.00 0.00 1.94
164 165 2.230660 GCTCTTGGCTGTACCTTTTGT 58.769 47.619 0.00 0.00 40.22 2.83
178 179 2.679837 CCTTTTGTCTGTATCGCTGCAT 59.320 45.455 0.00 0.00 0.00 3.96
376 383 4.884164 GCATGGACAAAGCCTTTATAGAGT 59.116 41.667 0.00 0.00 0.00 3.24
472 479 7.101652 TGACTGCACCAACTGTTTATTTTTA 57.898 32.000 0.00 0.00 0.00 1.52
626 633 5.065914 AGCAAGTGATCTTCTTTTGCACTA 58.934 37.500 16.46 0.00 44.81 2.74
779 786 8.031277 GTCTCTTTATTTGCCAATCTGAAATGT 58.969 33.333 0.00 0.00 0.00 2.71
836 843 9.605275 CTTATGAGTTCTTGATCTGTAATCCAA 57.395 33.333 0.00 0.00 0.00 3.53
951 958 7.346751 ACTGTGTCACTTTATTCCATTTTGT 57.653 32.000 4.27 0.00 0.00 2.83
997 1004 7.201530 CCAAACAGAAGGTTCGACATCTATAAC 60.202 40.741 0.00 0.00 39.29 1.89
1002 1009 2.287188 GGTTCGACATCTATAACGCCGA 60.287 50.000 0.00 0.00 0.00 5.54
1004 1011 1.941975 TCGACATCTATAACGCCGACA 59.058 47.619 0.00 0.00 0.00 4.35
1015 1022 1.153978 CGCCGACAATTTGCTGCAT 60.154 52.632 1.84 0.00 0.00 3.96
1049 1057 1.335496 GTCGCTTTTACAGGCCAACAA 59.665 47.619 5.01 0.00 0.00 2.83
1068 1076 0.036164 ACTTGTATGACAGCGGGCAA 59.964 50.000 0.00 0.00 0.00 4.52
1112 1120 3.028130 TCTACACCCTGAATATGACGCA 58.972 45.455 0.00 0.00 0.00 5.24
1179 1187 3.119849 CGCTCATTCGGATGGAAAACTTT 60.120 43.478 3.25 0.00 38.36 2.66
1257 1273 4.865776 TGACGAATATATCATGCGTGTGA 58.134 39.130 5.68 0.00 35.09 3.58
1321 1350 3.325753 ACCTCCAGCTCCCTGCAC 61.326 66.667 0.00 0.00 45.94 4.57
1509 3325 6.344500 CAGCTGATTCAGTCCTACACTAAAT 58.656 40.000 8.42 0.00 32.21 1.40
1779 5486 8.506168 AGAAGTCAAGAAACACTACAATTTGA 57.494 30.769 2.79 0.00 0.00 2.69
1804 5511 6.051717 CACGAATAAACTGGAATGGAGATCT 58.948 40.000 0.00 0.00 0.00 2.75
1805 5512 6.018425 CACGAATAAACTGGAATGGAGATCTG 60.018 42.308 0.00 0.00 0.00 2.90
1882 5589 2.292267 CCAGAATCCGAGGATTGTTGG 58.708 52.381 20.86 20.92 43.98 3.77
2063 5975 9.961265 ATGTTAGCTCAATGATATCACAAAATG 57.039 29.630 7.78 3.11 0.00 2.32
2612 14791 5.514500 AACAGGGTTAAGCCTCATAGAAA 57.486 39.130 23.33 0.00 37.43 2.52
2658 14856 4.560819 TCTTCGCACATTTCACAAAACAAC 59.439 37.500 0.00 0.00 0.00 3.32
2738 15094 1.202627 GCCACATTTTTCCAGCACCAA 60.203 47.619 0.00 0.00 0.00 3.67
3480 15987 4.837896 TGCTATGTATGAAGAGGAGACG 57.162 45.455 0.00 0.00 0.00 4.18
3614 16121 3.499338 TGGAAAATGCTGATGAAGTGGT 58.501 40.909 0.00 0.00 0.00 4.16
3654 16161 2.535984 GACATCAATAGCGGAGTCAACG 59.464 50.000 0.00 0.00 0.00 4.10
4003 16832 4.644685 ACACACCAACAGCTTTCATTAACT 59.355 37.500 0.00 0.00 0.00 2.24
4094 16923 7.340122 TGGACTACATAGAGACTGAAATGAG 57.660 40.000 0.00 0.00 0.00 2.90
4114 16943 6.811253 TGAGTGAACAAACACACTAAAACT 57.189 33.333 0.00 0.00 45.54 2.66
4669 17552 6.836242 AGAGAAGGAAAAACAGTGATCTCTT 58.164 36.000 0.00 0.00 39.34 2.85
4716 17601 4.503991 CCAGCTTCAGACCATAATAGACCC 60.504 50.000 0.00 0.00 0.00 4.46
5050 17987 1.067283 CACAGAGATGTCAAGACCGCT 60.067 52.381 0.00 0.00 0.00 5.52
5242 18179 1.741401 CGGCATCGTGCTCTTGGAA 60.741 57.895 9.31 0.00 44.28 3.53
5656 18605 5.661759 AGAATTAAACCCTCTATCTGGACGT 59.338 40.000 0.00 0.00 0.00 4.34
5902 18881 2.953648 TGATCTATTAACCGGTGCTCGA 59.046 45.455 8.52 1.61 42.43 4.04
5914 18905 1.207329 GGTGCTCGAACATTAGGGTCT 59.793 52.381 0.00 0.00 0.00 3.85
5935 18926 7.641760 GGTCTAAACCAAATCGAAAACAAGTA 58.358 34.615 0.00 0.00 45.68 2.24
5967 18958 8.911918 TTAAACACTGCTACTTTAGAATTCCA 57.088 30.769 0.65 0.00 0.00 3.53
6024 19017 7.534282 TGAATTAGATTAAAAATGCGTGCTCA 58.466 30.769 0.00 0.00 0.00 4.26
6025 19018 7.484641 TGAATTAGATTAAAAATGCGTGCTCAC 59.515 33.333 0.00 0.00 0.00 3.51
6041 19034 4.081642 GTGCTCACTGTACCAAATCCTCTA 60.082 45.833 0.00 0.00 0.00 2.43
6046 19039 5.012664 TCACTGTACCAAATCCTCTAAGCAA 59.987 40.000 0.00 0.00 0.00 3.91
6049 19042 6.375455 ACTGTACCAAATCCTCTAAGCAATTG 59.625 38.462 0.00 0.00 0.00 2.32
6079 19072 7.944554 AGTTCATCGACCATCCCAAAAATATAT 59.055 33.333 0.00 0.00 0.00 0.86
6081 19074 7.230747 TCATCGACCATCCCAAAAATATATGT 58.769 34.615 0.00 0.00 0.00 2.29
6088 19081 6.070653 CCATCCCAAAAATATATGTGATGGGG 60.071 42.308 19.93 11.80 43.60 4.96
6090 19083 7.168022 TCCCAAAAATATATGTGATGGGGTA 57.832 36.000 19.93 6.01 44.91 3.69
6120 19113 1.550524 TCAATGAGCGAGTTAGCACCT 59.449 47.619 0.00 0.00 40.15 4.00
6121 19114 2.758423 TCAATGAGCGAGTTAGCACCTA 59.242 45.455 0.00 0.00 40.15 3.08
6122 19115 3.384789 TCAATGAGCGAGTTAGCACCTAT 59.615 43.478 0.00 0.00 40.15 2.57
6123 19116 4.583073 TCAATGAGCGAGTTAGCACCTATA 59.417 41.667 0.00 0.00 40.15 1.31
6157 19150 0.957362 GCTGATGCTTATGAAGGGGC 59.043 55.000 0.00 0.00 36.03 5.80
6165 19158 2.363359 GCTTATGAAGGGGCAGAAATGG 59.637 50.000 0.00 0.00 0.00 3.16
6171 19164 0.712380 AGGGGCAGAAATGGAACCAT 59.288 50.000 0.00 0.00 38.46 3.55
6188 19181 5.309806 GGAACCATATGACATACCTAACCCT 59.690 44.000 3.65 0.00 0.00 4.34
6189 19182 6.435292 AACCATATGACATACCTAACCCTC 57.565 41.667 3.65 0.00 0.00 4.30
6190 19183 4.527038 ACCATATGACATACCTAACCCTCG 59.473 45.833 3.65 0.00 0.00 4.63
6191 19184 4.527038 CCATATGACATACCTAACCCTCGT 59.473 45.833 3.65 0.00 0.00 4.18
6192 19185 5.336531 CCATATGACATACCTAACCCTCGTC 60.337 48.000 3.65 0.00 0.00 4.20
6194 19187 1.336125 GACATACCTAACCCTCGTCCG 59.664 57.143 0.00 0.00 0.00 4.79
6195 19188 0.031721 CATACCTAACCCTCGTCCGC 59.968 60.000 0.00 0.00 0.00 5.54
6196 19189 1.111715 ATACCTAACCCTCGTCCGCC 61.112 60.000 0.00 0.00 0.00 6.13
6197 19190 4.203076 CCTAACCCTCGTCCGCCG 62.203 72.222 0.00 0.00 38.13 6.46
6198 19191 3.446570 CTAACCCTCGTCCGCCGT 61.447 66.667 0.00 0.00 37.94 5.68
6199 19192 3.407046 CTAACCCTCGTCCGCCGTC 62.407 68.421 0.00 0.00 37.94 4.79
6345 19344 2.284552 AAAACCCATGGCCGCCAT 60.285 55.556 19.79 19.79 46.37 4.40
6494 19669 2.663879 GCAACAACAGCTGAATCACTCG 60.664 50.000 23.35 1.83 0.00 4.18
6495 19670 2.533266 ACAACAGCTGAATCACTCGT 57.467 45.000 23.35 2.16 0.00 4.18
6496 19671 2.138320 ACAACAGCTGAATCACTCGTG 58.862 47.619 23.35 6.20 0.00 4.35
6497 19672 1.136141 CAACAGCTGAATCACTCGTGC 60.136 52.381 23.35 0.00 0.00 5.34
6500 19675 1.392853 CAGCTGAATCACTCGTGCTTC 59.607 52.381 8.42 6.67 35.22 3.86
6501 19676 1.274728 AGCTGAATCACTCGTGCTTCT 59.725 47.619 12.94 0.00 36.84 2.85
6502 19677 1.392853 GCTGAATCACTCGTGCTTCTG 59.607 52.381 12.94 12.95 36.84 3.02
6503 19678 1.998315 CTGAATCACTCGTGCTTCTGG 59.002 52.381 12.94 4.79 36.84 3.86
6504 19679 1.618343 TGAATCACTCGTGCTTCTGGA 59.382 47.619 12.94 0.00 36.84 3.86
6505 19680 2.266554 GAATCACTCGTGCTTCTGGAG 58.733 52.381 6.43 0.00 34.09 3.86
6507 19682 1.040646 TCACTCGTGCTTCTGGAGTT 58.959 50.000 0.00 0.00 38.90 3.01
6509 19684 1.000283 CACTCGTGCTTCTGGAGTTCT 60.000 52.381 0.00 0.00 38.90 3.01
6511 19686 0.318441 TCGTGCTTCTGGAGTTCTGG 59.682 55.000 0.00 0.00 0.00 3.86
6512 19687 0.671781 CGTGCTTCTGGAGTTCTGGG 60.672 60.000 0.00 0.00 0.00 4.45
6513 19688 0.398318 GTGCTTCTGGAGTTCTGGGT 59.602 55.000 0.00 0.00 0.00 4.51
6514 19689 1.140312 TGCTTCTGGAGTTCTGGGTT 58.860 50.000 0.00 0.00 0.00 4.11
6515 19690 1.202806 TGCTTCTGGAGTTCTGGGTTG 60.203 52.381 0.00 0.00 0.00 3.77
6516 19691 1.072331 GCTTCTGGAGTTCTGGGTTGA 59.928 52.381 0.00 0.00 0.00 3.18
6517 19692 2.873649 GCTTCTGGAGTTCTGGGTTGAG 60.874 54.545 0.00 0.00 0.00 3.02
6518 19693 2.398754 TCTGGAGTTCTGGGTTGAGA 57.601 50.000 0.00 0.00 0.00 3.27
6519 19694 2.251818 TCTGGAGTTCTGGGTTGAGAG 58.748 52.381 0.00 0.00 0.00 3.20
6520 19695 2.158310 TCTGGAGTTCTGGGTTGAGAGA 60.158 50.000 0.00 0.00 0.00 3.10
6529 20516 1.420138 TGGGTTGAGAGAAAGTCCACC 59.580 52.381 0.00 0.00 0.00 4.61
6530 20517 1.271434 GGGTTGAGAGAAAGTCCACCC 60.271 57.143 0.00 0.00 0.00 4.61
6531 20518 1.420138 GGTTGAGAGAAAGTCCACCCA 59.580 52.381 0.00 0.00 0.00 4.51
6533 20520 1.056660 TGAGAGAAAGTCCACCCACC 58.943 55.000 0.00 0.00 0.00 4.61
6534 20521 1.353091 GAGAGAAAGTCCACCCACCT 58.647 55.000 0.00 0.00 0.00 4.00
6536 20523 2.904434 GAGAGAAAGTCCACCCACCTTA 59.096 50.000 0.00 0.00 0.00 2.69
6543 20530 0.689745 TCCACCCACCTTATCCTCCG 60.690 60.000 0.00 0.00 0.00 4.63
6544 20531 0.981277 CCACCCACCTTATCCTCCGT 60.981 60.000 0.00 0.00 0.00 4.69
6545 20532 0.909623 CACCCACCTTATCCTCCGTT 59.090 55.000 0.00 0.00 0.00 4.44
6547 20534 1.280998 ACCCACCTTATCCTCCGTTTG 59.719 52.381 0.00 0.00 0.00 2.93
6548 20535 1.280998 CCCACCTTATCCTCCGTTTGT 59.719 52.381 0.00 0.00 0.00 2.83
6550 20537 3.418047 CCACCTTATCCTCCGTTTGTTT 58.582 45.455 0.00 0.00 0.00 2.83
6556 20543 7.551617 CACCTTATCCTCCGTTTGTTTTATACT 59.448 37.037 0.00 0.00 0.00 2.12
6558 20545 9.038803 CCTTATCCTCCGTTTGTTTTATACTAC 57.961 37.037 0.00 0.00 0.00 2.73
6559 20546 9.813446 CTTATCCTCCGTTTGTTTTATACTACT 57.187 33.333 0.00 0.00 0.00 2.57
6560 20547 9.590451 TTATCCTCCGTTTGTTTTATACTACTG 57.410 33.333 0.00 0.00 0.00 2.74
6561 20548 6.400568 TCCTCCGTTTGTTTTATACTACTGG 58.599 40.000 0.00 0.00 0.00 4.00
6562 20549 6.211184 TCCTCCGTTTGTTTTATACTACTGGA 59.789 38.462 0.00 0.00 0.00 3.86
6563 20550 7.046033 CCTCCGTTTGTTTTATACTACTGGAT 58.954 38.462 0.00 0.00 0.00 3.41
6564 20551 7.551617 CCTCCGTTTGTTTTATACTACTGGATT 59.448 37.037 0.00 0.00 0.00 3.01
6565 20552 9.590451 CTCCGTTTGTTTTATACTACTGGATTA 57.410 33.333 0.00 0.00 0.00 1.75
6567 20554 9.153721 CCGTTTGTTTTATACTACTGGATTACA 57.846 33.333 0.00 0.00 0.00 2.41
6579 20566 8.029642 ACTACTGGATTACATTTCTTTTGTCG 57.970 34.615 0.00 0.00 0.00 4.35
6580 20567 7.876068 ACTACTGGATTACATTTCTTTTGTCGA 59.124 33.333 0.00 0.00 0.00 4.20
6581 20568 7.687941 ACTGGATTACATTTCTTTTGTCGAT 57.312 32.000 0.00 0.00 0.00 3.59
6582 20569 8.786826 ACTGGATTACATTTCTTTTGTCGATA 57.213 30.769 0.00 0.00 0.00 2.92
6583 20570 9.226606 ACTGGATTACATTTCTTTTGTCGATAA 57.773 29.630 0.00 0.00 0.00 1.75
6584 20571 9.708222 CTGGATTACATTTCTTTTGTCGATAAG 57.292 33.333 0.00 0.00 0.00 1.73
6585 20572 8.673711 TGGATTACATTTCTTTTGTCGATAAGG 58.326 33.333 0.00 0.00 0.00 2.69
6586 20573 7.644157 GGATTACATTTCTTTTGTCGATAAGGC 59.356 37.037 0.00 0.00 0.00 4.35
6587 20574 5.310720 ACATTTCTTTTGTCGATAAGGCC 57.689 39.130 0.00 0.00 0.00 5.19
6589 20576 5.242838 ACATTTCTTTTGTCGATAAGGCCAA 59.757 36.000 5.01 0.00 0.00 4.52
6590 20577 5.371115 TTTCTTTTGTCGATAAGGCCAAG 57.629 39.130 5.01 0.00 0.00 3.61
6603 20590 1.804601 GGCCAAGCCCATATACGTAC 58.195 55.000 0.00 0.00 44.06 3.67
6607 20594 2.224185 CCAAGCCCATATACGTACAGCA 60.224 50.000 0.00 0.00 0.00 4.41
6608 20595 3.557054 CCAAGCCCATATACGTACAGCAT 60.557 47.826 0.00 0.00 0.00 3.79
6612 20599 3.398406 CCCATATACGTACAGCATTGCA 58.602 45.455 11.91 0.00 0.00 4.08
6613 20600 3.812609 CCCATATACGTACAGCATTGCAA 59.187 43.478 11.91 0.00 0.00 4.08
6614 20601 4.274705 CCCATATACGTACAGCATTGCAAA 59.725 41.667 11.91 0.00 0.00 3.68
6615 20602 5.443261 CCATATACGTACAGCATTGCAAAG 58.557 41.667 11.91 0.00 0.00 2.77
6616 20603 5.236263 CCATATACGTACAGCATTGCAAAGA 59.764 40.000 11.91 0.00 0.00 2.52
6618 20605 1.535462 ACGTACAGCATTGCAAAGACC 59.465 47.619 11.91 0.00 0.00 3.85
6619 20606 1.535028 CGTACAGCATTGCAAAGACCA 59.465 47.619 11.91 0.00 0.00 4.02
6620 20607 2.162208 CGTACAGCATTGCAAAGACCAT 59.838 45.455 11.91 0.00 0.00 3.55
6621 20608 3.728864 CGTACAGCATTGCAAAGACCATC 60.729 47.826 11.91 0.00 0.00 3.51
6625 20612 3.444742 CAGCATTGCAAAGACCATCCTTA 59.555 43.478 11.91 0.00 0.00 2.69
6626 20613 3.445096 AGCATTGCAAAGACCATCCTTAC 59.555 43.478 11.91 0.00 0.00 2.34
6627 20614 3.193267 GCATTGCAAAGACCATCCTTACA 59.807 43.478 1.71 0.00 0.00 2.41
6628 20615 4.676196 GCATTGCAAAGACCATCCTTACAG 60.676 45.833 1.71 0.00 0.00 2.74
6629 20616 2.436417 TGCAAAGACCATCCTTACAGC 58.564 47.619 0.00 0.00 0.00 4.40
6630 20617 1.398390 GCAAAGACCATCCTTACAGCG 59.602 52.381 0.00 0.00 0.00 5.18
6632 20619 2.932614 CAAAGACCATCCTTACAGCGAG 59.067 50.000 0.00 0.00 0.00 5.03
6633 20620 0.461961 AGACCATCCTTACAGCGAGC 59.538 55.000 0.00 0.00 0.00 5.03
6634 20621 0.461961 GACCATCCTTACAGCGAGCT 59.538 55.000 0.00 0.00 0.00 4.09
6635 20622 0.461961 ACCATCCTTACAGCGAGCTC 59.538 55.000 2.73 2.73 0.00 4.09
6636 20623 0.249657 CCATCCTTACAGCGAGCTCC 60.250 60.000 8.47 0.68 0.00 4.70
6637 20624 0.749649 CATCCTTACAGCGAGCTCCT 59.250 55.000 8.47 3.35 0.00 3.69
6638 20625 1.137872 CATCCTTACAGCGAGCTCCTT 59.862 52.381 8.47 0.00 0.00 3.36
6639 20626 1.267121 TCCTTACAGCGAGCTCCTTT 58.733 50.000 8.47 2.26 0.00 3.11
6641 20628 2.165845 TCCTTACAGCGAGCTCCTTTAC 59.834 50.000 8.47 0.00 0.00 2.01
6642 20629 2.166664 CCTTACAGCGAGCTCCTTTACT 59.833 50.000 8.47 0.00 0.00 2.24
6643 20630 2.941453 TACAGCGAGCTCCTTTACTG 57.059 50.000 8.47 10.45 0.00 2.74
6644 20631 0.247736 ACAGCGAGCTCCTTTACTGG 59.752 55.000 8.47 0.00 0.00 4.00
6645 20632 0.460987 CAGCGAGCTCCTTTACTGGG 60.461 60.000 8.47 0.00 0.00 4.45
6647 20634 0.741221 GCGAGCTCCTTTACTGGGTG 60.741 60.000 8.47 0.00 0.00 4.61
6648 20635 0.108138 CGAGCTCCTTTACTGGGTGG 60.108 60.000 8.47 0.00 0.00 4.61
6649 20636 1.276622 GAGCTCCTTTACTGGGTGGA 58.723 55.000 0.87 0.00 0.00 4.02
6650 20637 0.984995 AGCTCCTTTACTGGGTGGAC 59.015 55.000 0.00 0.00 0.00 4.02
6651 20638 0.984995 GCTCCTTTACTGGGTGGACT 59.015 55.000 0.00 0.00 0.00 3.85
6652 20639 1.339151 GCTCCTTTACTGGGTGGACTG 60.339 57.143 0.00 0.00 0.00 3.51
6653 20640 2.257207 CTCCTTTACTGGGTGGACTGA 58.743 52.381 0.00 0.00 0.00 3.41
6654 20641 2.840651 CTCCTTTACTGGGTGGACTGAT 59.159 50.000 0.00 0.00 0.00 2.90
6655 20642 2.571653 TCCTTTACTGGGTGGACTGATG 59.428 50.000 0.00 0.00 0.00 3.07
6656 20643 2.356125 CCTTTACTGGGTGGACTGATGG 60.356 54.545 0.00 0.00 0.00 3.51
6657 20644 1.285280 TTACTGGGTGGACTGATGGG 58.715 55.000 0.00 0.00 0.00 4.00
6658 20645 1.271840 TACTGGGTGGACTGATGGGC 61.272 60.000 0.00 0.00 0.00 5.36
6659 20646 2.531428 TGGGTGGACTGATGGGCA 60.531 61.111 0.00 0.00 0.00 5.36
6660 20647 1.929860 CTGGGTGGACTGATGGGCAT 61.930 60.000 0.00 0.00 0.00 4.40
6661 20648 1.454479 GGGTGGACTGATGGGCATG 60.454 63.158 0.00 0.00 0.00 4.06
6662 20649 1.454479 GGTGGACTGATGGGCATGG 60.454 63.158 0.00 0.00 0.00 3.66
6663 20650 2.123428 GTGGACTGATGGGCATGGC 61.123 63.158 11.56 11.56 0.00 4.40
6664 20651 2.276409 GGACTGATGGGCATGGCA 59.724 61.111 22.06 7.72 0.00 4.92
6665 20652 1.152610 GGACTGATGGGCATGGCAT 60.153 57.895 22.06 12.33 0.00 4.40
6667 20654 0.466739 GACTGATGGGCATGGCATGA 60.467 55.000 30.69 10.81 0.00 3.07
6669 20656 0.673985 CTGATGGGCATGGCATGAAG 59.326 55.000 30.69 12.69 0.00 3.02
6670 20657 1.366366 GATGGGCATGGCATGAAGC 59.634 57.895 30.69 15.40 44.65 3.86
6682 20669 3.417690 GCATGAAGCAATTCAGAGGTC 57.582 47.619 0.00 0.00 44.79 3.85
6683 20670 2.223203 GCATGAAGCAATTCAGAGGTCG 60.223 50.000 0.00 0.00 44.79 4.79
6685 20672 1.347707 TGAAGCAATTCAGAGGTCGGT 59.652 47.619 0.00 0.00 0.00 4.69
6686 20673 1.734465 GAAGCAATTCAGAGGTCGGTG 59.266 52.381 0.00 0.00 0.00 4.94
6687 20674 0.674895 AGCAATTCAGAGGTCGGTGC 60.675 55.000 0.00 0.00 0.00 5.01
6688 20675 1.648467 GCAATTCAGAGGTCGGTGCC 61.648 60.000 0.00 0.00 0.00 5.01
6689 20676 0.036010 CAATTCAGAGGTCGGTGCCT 60.036 55.000 0.00 0.00 42.53 4.75
6690 20677 0.693049 AATTCAGAGGTCGGTGCCTT 59.307 50.000 0.00 0.00 39.34 4.35
6691 20678 1.568504 ATTCAGAGGTCGGTGCCTTA 58.431 50.000 0.00 0.00 39.34 2.69
6692 20679 1.568504 TTCAGAGGTCGGTGCCTTAT 58.431 50.000 0.00 0.00 39.34 1.73
6693 20680 2.447408 TCAGAGGTCGGTGCCTTATA 57.553 50.000 0.00 0.00 39.34 0.98
6694 20681 2.742348 TCAGAGGTCGGTGCCTTATAA 58.258 47.619 0.00 0.00 39.34 0.98
6695 20682 3.305720 TCAGAGGTCGGTGCCTTATAAT 58.694 45.455 0.00 0.00 39.34 1.28
6697 20684 3.069586 CAGAGGTCGGTGCCTTATAATGA 59.930 47.826 0.00 0.00 39.34 2.57
6698 20685 3.322254 AGAGGTCGGTGCCTTATAATGAG 59.678 47.826 0.00 0.00 39.34 2.90
6700 20687 4.220724 AGGTCGGTGCCTTATAATGAGTA 58.779 43.478 0.00 0.00 34.71 2.59
6701 20688 4.838986 AGGTCGGTGCCTTATAATGAGTAT 59.161 41.667 0.00 0.00 34.71 2.12
6703 20690 6.495872 AGGTCGGTGCCTTATAATGAGTATTA 59.504 38.462 0.00 0.00 34.71 0.98
6704 20691 7.180408 AGGTCGGTGCCTTATAATGAGTATTAT 59.820 37.037 0.00 0.00 41.27 1.28
6705 20692 7.491696 GGTCGGTGCCTTATAATGAGTATTATC 59.508 40.741 0.00 0.00 39.55 1.75
6707 20694 8.251026 TCGGTGCCTTATAATGAGTATTATCAG 58.749 37.037 0.00 0.00 39.55 2.90
6708 20695 8.035394 CGGTGCCTTATAATGAGTATTATCAGT 58.965 37.037 0.00 0.00 39.55 3.41
6720 20707 8.533569 TGAGTATTATCAGTCATCCAGTACAA 57.466 34.615 0.00 0.00 0.00 2.41
6721 20708 8.633561 TGAGTATTATCAGTCATCCAGTACAAG 58.366 37.037 0.00 0.00 0.00 3.16
6722 20709 8.768501 AGTATTATCAGTCATCCAGTACAAGA 57.231 34.615 0.00 0.00 0.00 3.02
6723 20710 8.634444 AGTATTATCAGTCATCCAGTACAAGAC 58.366 37.037 0.00 0.00 0.00 3.01
6724 20711 4.744795 ATCAGTCATCCAGTACAAGACC 57.255 45.455 0.00 0.00 0.00 3.85
6725 20712 2.832129 TCAGTCATCCAGTACAAGACCC 59.168 50.000 0.00 0.00 0.00 4.46
6726 20713 2.567169 CAGTCATCCAGTACAAGACCCA 59.433 50.000 0.00 0.00 0.00 4.51
6727 20714 2.834549 AGTCATCCAGTACAAGACCCAG 59.165 50.000 0.00 0.00 0.00 4.45
6729 20716 2.187958 CATCCAGTACAAGACCCAGGA 58.812 52.381 0.00 0.00 0.00 3.86
6730 20717 1.938585 TCCAGTACAAGACCCAGGAG 58.061 55.000 0.00 0.00 0.00 3.69
6731 20718 1.149288 TCCAGTACAAGACCCAGGAGT 59.851 52.381 0.00 0.00 0.00 3.85
6733 20720 2.028020 CCAGTACAAGACCCAGGAGTTC 60.028 54.545 0.00 0.00 0.00 3.01
6734 20721 2.632996 CAGTACAAGACCCAGGAGTTCA 59.367 50.000 0.00 0.00 0.00 3.18
6736 20723 4.466370 CAGTACAAGACCCAGGAGTTCATA 59.534 45.833 0.00 0.00 0.00 2.15
6737 20724 5.129485 CAGTACAAGACCCAGGAGTTCATAT 59.871 44.000 0.00 0.00 0.00 1.78
6738 20725 4.762289 ACAAGACCCAGGAGTTCATATC 57.238 45.455 0.00 0.00 0.00 1.63
6739 20726 4.366267 ACAAGACCCAGGAGTTCATATCT 58.634 43.478 0.00 0.00 0.00 1.98
6740 20727 4.785376 ACAAGACCCAGGAGTTCATATCTT 59.215 41.667 0.00 0.00 0.00 2.40
6741 20728 5.104735 ACAAGACCCAGGAGTTCATATCTTC 60.105 44.000 0.00 0.00 0.00 2.87
6742 20729 4.624913 AGACCCAGGAGTTCATATCTTCA 58.375 43.478 0.00 0.00 0.00 3.02
6743 20730 4.653341 AGACCCAGGAGTTCATATCTTCAG 59.347 45.833 0.00 0.00 0.00 3.02
6744 20731 4.624913 ACCCAGGAGTTCATATCTTCAGA 58.375 43.478 0.00 0.00 0.00 3.27
6747 20734 6.183361 ACCCAGGAGTTCATATCTTCAGAATC 60.183 42.308 0.00 0.00 0.00 2.52
6749 20736 6.705381 CCAGGAGTTCATATCTTCAGAATCAC 59.295 42.308 0.00 0.00 0.00 3.06
6751 20738 6.614906 AGGAGTTCATATCTTCAGAATCACCT 59.385 38.462 0.00 0.00 0.00 4.00
6752 20739 6.705381 GGAGTTCATATCTTCAGAATCACCTG 59.295 42.308 0.00 0.00 35.55 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 4.079253 GTGTAGAAAATGGAGGGCAAAGA 58.921 43.478 0.00 0.00 0.00 2.52
164 165 7.728847 ATAAATGTAAATGCAGCGATACAGA 57.271 32.000 9.69 1.13 32.31 3.41
294 295 6.921857 CACAGAATCTTCTTCAAAAGCATTGT 59.078 34.615 2.69 0.00 34.74 2.71
363 370 5.128008 GGTGAAGACAGACTCTATAAAGGCT 59.872 44.000 0.00 0.00 33.81 4.58
376 383 8.783093 CAAACTTACATTATTGGTGAAGACAGA 58.217 33.333 0.00 0.00 0.00 3.41
456 463 8.190888 TGCAAACACTAAAAATAAACAGTTGG 57.809 30.769 0.00 0.00 0.00 3.77
595 602 8.939929 CAAAAGAAGATCACTTGCTCTGTATAA 58.060 33.333 0.00 0.00 36.39 0.98
626 633 5.587844 GGATGAAGAACAGAAGCATACATGT 59.412 40.000 2.69 2.69 0.00 3.21
779 786 7.987750 TGGTTAGTGTGCTGTCAATTTATAA 57.012 32.000 0.00 0.00 0.00 0.98
836 843 1.672356 GGCAGCTTCACGACACCAT 60.672 57.895 0.00 0.00 0.00 3.55
951 958 6.602410 TTGGGTTGCTATCATTGATTTCAA 57.398 33.333 4.14 6.79 40.51 2.69
963 970 3.525800 ACCTTCTGTTTGGGTTGCTAT 57.474 42.857 0.00 0.00 0.00 2.97
997 1004 1.135699 GATGCAGCAAATTGTCGGCG 61.136 55.000 0.00 0.00 0.00 6.46
1002 1009 0.171903 GCCTCGATGCAGCAAATTGT 59.828 50.000 7.89 0.00 0.00 2.71
1004 1011 1.133790 GAAGCCTCGATGCAGCAAATT 59.866 47.619 15.26 0.00 0.00 1.82
1015 1022 3.132139 CGACGGGAGAAGCCTCGA 61.132 66.667 0.00 0.00 40.33 4.04
1049 1057 0.036164 TTGCCCGCTGTCATACAAGT 59.964 50.000 0.00 0.00 0.00 3.16
1068 1076 1.856597 GCGTCGCCGTTATACAAGAAT 59.143 47.619 5.75 0.00 36.15 2.40
1179 1187 1.043116 CATCCTGGGAGTCAGCGGTA 61.043 60.000 0.00 0.00 42.05 4.02
1257 1273 2.989909 TGATGATGGTGCGAATCTTGT 58.010 42.857 0.00 0.00 0.00 3.16
1302 1324 3.005539 GCAGGGAGCTGGAGGTGA 61.006 66.667 0.00 0.00 41.15 4.02
1509 3325 7.686434 ACTTTAGAACATGGCTTACTAAGGAA 58.314 34.615 0.00 0.00 0.00 3.36
1779 5486 5.160607 TCTCCATTCCAGTTTATTCGTGT 57.839 39.130 0.00 0.00 0.00 4.49
1804 5511 3.117888 GGAATATTCTCTTGGGGAGCACA 60.118 47.826 14.95 0.00 41.60 4.57
1805 5512 3.137360 AGGAATATTCTCTTGGGGAGCAC 59.863 47.826 14.95 0.00 41.60 4.40
1882 5589 4.527427 AGTCCCTGTTAGGTTCTTACACTC 59.473 45.833 0.00 0.00 31.93 3.51
2260 14293 4.589216 ATTGTTGTGTGACAAATCCCTG 57.411 40.909 0.00 0.00 42.29 4.45
2403 14444 7.442364 CCATCGAGTTGGTTATATGACAAATCT 59.558 37.037 0.00 0.00 37.14 2.40
2658 14856 8.070171 CCACAGAAAGTCAAACTTGTATAACTG 58.930 37.037 0.00 0.00 38.66 3.16
2724 15080 1.739049 CGGCTTGGTGCTGGAAAAA 59.261 52.632 0.00 0.00 44.06 1.94
2738 15094 4.421515 AATGAGGCTGCTGCGGCT 62.422 61.111 30.31 23.36 43.13 5.52
3480 15987 4.319177 GTCTGATGTCAATATGTAGGGGC 58.681 47.826 0.00 0.00 0.00 5.80
3614 16121 3.585289 TGTCTCCATAAGCACCTTTACCA 59.415 43.478 0.00 0.00 0.00 3.25
4003 16832 2.548493 GCACGTAGGTGGTTTCCAAGTA 60.548 50.000 16.75 0.00 44.54 2.24
4094 16923 7.081976 AGACAAGTTTTAGTGTGTTTGTTCAC 58.918 34.615 0.00 0.00 38.63 3.18
4338 17173 4.095483 AGCAGCAATAACAGTCTATGCAAC 59.905 41.667 0.00 0.00 34.93 4.17
4427 17264 8.859090 TGAATTTGACAATGGACAATTCTAAGT 58.141 29.630 11.75 0.00 0.00 2.24
4669 17552 7.557358 TGGCATAAATAAGCTCTTTGATCTTCA 59.443 33.333 4.85 0.00 0.00 3.02
4716 17601 8.469200 ACACAATGATTAACCTTGGTATCAATG 58.531 33.333 14.40 14.40 35.22 2.82
5242 18179 0.685458 GGGGCTTGCCAGTGATGATT 60.685 55.000 14.04 0.00 0.00 2.57
5656 18605 4.202567 ACTCAGCTGGTATTTTCCCTTCAA 60.203 41.667 15.13 0.00 0.00 2.69
5810 18764 2.357760 TAAACCCCAGTGTCGCGC 60.358 61.111 0.00 0.00 0.00 6.86
5818 18772 7.947282 TCAAAATTACTTGAACTAAACCCCAG 58.053 34.615 0.00 0.00 32.39 4.45
5897 18876 3.869832 GGTTTAGACCCTAATGTTCGAGC 59.130 47.826 0.00 0.00 40.25 5.03
5902 18881 6.478129 TCGATTTGGTTTAGACCCTAATGTT 58.522 36.000 0.00 0.00 45.92 2.71
5914 18905 8.211116 TGACTACTTGTTTTCGATTTGGTTTA 57.789 30.769 0.00 0.00 0.00 2.01
5935 18926 4.608948 AGTAGCAGTGTTTAAGCTGACT 57.391 40.909 0.00 6.83 39.30 3.41
5967 18958 5.272402 CAAGAGGGATTGGGGATAAAACTT 58.728 41.667 0.00 0.00 0.00 2.66
6024 19017 5.499004 TTGCTTAGAGGATTTGGTACAGT 57.501 39.130 0.00 0.00 42.39 3.55
6025 19018 6.375455 ACAATTGCTTAGAGGATTTGGTACAG 59.625 38.462 5.05 0.00 42.39 2.74
6068 19061 9.753674 ATAGTACCCCATCACATATATTTTTGG 57.246 33.333 0.00 0.00 0.00 3.28
6079 19072 7.625498 TTGATTCATATAGTACCCCATCACA 57.375 36.000 0.00 0.00 0.00 3.58
6081 19074 8.448068 TCATTGATTCATATAGTACCCCATCA 57.552 34.615 0.00 0.00 0.00 3.07
6086 19079 6.631016 TCGCTCATTGATTCATATAGTACCC 58.369 40.000 0.00 0.00 0.00 3.69
6088 19081 8.749841 AACTCGCTCATTGATTCATATAGTAC 57.250 34.615 0.00 0.00 0.00 2.73
6090 19083 7.543868 GCTAACTCGCTCATTGATTCATATAGT 59.456 37.037 0.00 0.00 0.00 2.12
6099 19092 2.169352 AGGTGCTAACTCGCTCATTGAT 59.831 45.455 0.00 0.00 0.00 2.57
6100 19093 1.550524 AGGTGCTAACTCGCTCATTGA 59.449 47.619 0.00 0.00 0.00 2.57
6120 19113 6.351371 GCATCAGCCTCTTGGTAGCTTATATA 60.351 42.308 0.00 0.00 33.70 0.86
6121 19114 5.570439 GCATCAGCCTCTTGGTAGCTTATAT 60.570 44.000 0.00 0.00 33.70 0.86
6122 19115 4.262635 GCATCAGCCTCTTGGTAGCTTATA 60.263 45.833 0.00 0.00 33.70 0.98
6123 19116 3.495806 GCATCAGCCTCTTGGTAGCTTAT 60.496 47.826 0.00 0.00 33.70 1.73
6157 19150 7.000472 AGGTATGTCATATGGTTCCATTTCTG 59.000 38.462 9.70 6.14 0.00 3.02
6165 19158 6.435292 AGGGTTAGGTATGTCATATGGTTC 57.565 41.667 2.13 0.00 0.00 3.62
6171 19164 4.147321 GGACGAGGGTTAGGTATGTCATA 58.853 47.826 0.00 0.00 0.00 2.15
6215 19208 3.444805 GCCGAGTCGAGGAGCTGT 61.445 66.667 15.64 0.00 0.00 4.40
6328 19327 2.284552 ATGGCGGCCATGGGTTTT 60.285 55.556 32.54 8.59 43.39 2.43
6329 19328 2.759560 GATGGCGGCCATGGGTTT 60.760 61.111 37.43 15.21 45.26 3.27
6465 19640 4.974721 CTGTTGTTGCGGGGGCCT 62.975 66.667 0.84 0.00 0.00 5.19
6468 19643 3.673484 CAGCTGTTGTTGCGGGGG 61.673 66.667 5.25 0.00 35.28 5.40
6469 19644 1.526575 ATTCAGCTGTTGTTGCGGGG 61.527 55.000 14.67 0.00 35.28 5.73
6470 19645 0.109597 GATTCAGCTGTTGTTGCGGG 60.110 55.000 14.67 0.00 35.28 6.13
6494 19669 0.398318 ACCCAGAACTCCAGAAGCAC 59.602 55.000 0.00 0.00 0.00 4.40
6495 19670 1.140312 AACCCAGAACTCCAGAAGCA 58.860 50.000 0.00 0.00 0.00 3.91
6496 19671 1.072331 TCAACCCAGAACTCCAGAAGC 59.928 52.381 0.00 0.00 0.00 3.86
6497 19672 2.634940 TCTCAACCCAGAACTCCAGAAG 59.365 50.000 0.00 0.00 0.00 2.85
6500 19675 2.251818 TCTCTCAACCCAGAACTCCAG 58.748 52.381 0.00 0.00 0.00 3.86
6501 19676 2.398754 TCTCTCAACCCAGAACTCCA 57.601 50.000 0.00 0.00 0.00 3.86
6502 19677 3.071747 ACTTTCTCTCAACCCAGAACTCC 59.928 47.826 0.00 0.00 0.00 3.85
6503 19678 4.311606 GACTTTCTCTCAACCCAGAACTC 58.688 47.826 0.00 0.00 0.00 3.01
6504 19679 3.071747 GGACTTTCTCTCAACCCAGAACT 59.928 47.826 0.00 0.00 0.00 3.01
6505 19680 3.181454 TGGACTTTCTCTCAACCCAGAAC 60.181 47.826 0.00 0.00 0.00 3.01
6507 19682 2.368875 GTGGACTTTCTCTCAACCCAGA 59.631 50.000 0.00 0.00 0.00 3.86
6509 19684 1.420138 GGTGGACTTTCTCTCAACCCA 59.580 52.381 0.00 0.00 0.00 4.51
6511 19686 1.420138 TGGGTGGACTTTCTCTCAACC 59.580 52.381 0.00 0.00 37.49 3.77
6512 19687 2.495084 GTGGGTGGACTTTCTCTCAAC 58.505 52.381 0.00 0.00 0.00 3.18
6513 19688 1.420138 GGTGGGTGGACTTTCTCTCAA 59.580 52.381 0.00 0.00 0.00 3.02
6514 19689 1.056660 GGTGGGTGGACTTTCTCTCA 58.943 55.000 0.00 0.00 0.00 3.27
6515 19690 1.353091 AGGTGGGTGGACTTTCTCTC 58.647 55.000 0.00 0.00 0.00 3.20
6516 19691 1.821088 AAGGTGGGTGGACTTTCTCT 58.179 50.000 0.00 0.00 0.00 3.10
6517 19692 3.370633 GGATAAGGTGGGTGGACTTTCTC 60.371 52.174 0.00 0.00 0.00 2.87
6518 19693 2.576648 GGATAAGGTGGGTGGACTTTCT 59.423 50.000 0.00 0.00 0.00 2.52
6519 19694 2.576648 AGGATAAGGTGGGTGGACTTTC 59.423 50.000 0.00 0.00 0.00 2.62
6520 19695 2.576648 GAGGATAAGGTGGGTGGACTTT 59.423 50.000 0.00 0.00 0.00 2.66
6529 20516 2.781681 ACAAACGGAGGATAAGGTGG 57.218 50.000 0.00 0.00 0.00 4.61
6530 20517 6.753107 ATAAAACAAACGGAGGATAAGGTG 57.247 37.500 0.00 0.00 0.00 4.00
6531 20518 7.627311 AGTATAAAACAAACGGAGGATAAGGT 58.373 34.615 0.00 0.00 0.00 3.50
6533 20520 9.813446 AGTAGTATAAAACAAACGGAGGATAAG 57.187 33.333 0.00 0.00 0.00 1.73
6534 20521 9.590451 CAGTAGTATAAAACAAACGGAGGATAA 57.410 33.333 0.00 0.00 0.00 1.75
6536 20523 7.046033 CCAGTAGTATAAAACAAACGGAGGAT 58.954 38.462 0.00 0.00 0.00 3.24
6556 20543 8.786826 ATCGACAAAAGAAATGTAATCCAGTA 57.213 30.769 0.00 0.00 0.00 2.74
6558 20545 9.708222 CTTATCGACAAAAGAAATGTAATCCAG 57.292 33.333 0.00 0.00 0.00 3.86
6559 20546 8.673711 CCTTATCGACAAAAGAAATGTAATCCA 58.326 33.333 5.75 0.00 0.00 3.41
6560 20547 7.644157 GCCTTATCGACAAAAGAAATGTAATCC 59.356 37.037 5.75 0.00 0.00 3.01
6561 20548 7.644157 GGCCTTATCGACAAAAGAAATGTAATC 59.356 37.037 0.00 0.00 0.00 1.75
6562 20549 7.122055 TGGCCTTATCGACAAAAGAAATGTAAT 59.878 33.333 3.32 0.00 0.00 1.89
6563 20550 6.431543 TGGCCTTATCGACAAAAGAAATGTAA 59.568 34.615 3.32 0.00 0.00 2.41
6564 20551 5.941058 TGGCCTTATCGACAAAAGAAATGTA 59.059 36.000 3.32 0.00 0.00 2.29
6565 20552 4.764823 TGGCCTTATCGACAAAAGAAATGT 59.235 37.500 3.32 0.00 0.00 2.71
6567 20554 5.622233 GCTTGGCCTTATCGACAAAAGAAAT 60.622 40.000 3.32 0.00 0.00 2.17
6568 20555 4.320935 GCTTGGCCTTATCGACAAAAGAAA 60.321 41.667 3.32 0.00 0.00 2.52
6569 20556 3.190535 GCTTGGCCTTATCGACAAAAGAA 59.809 43.478 3.32 0.00 0.00 2.52
6571 20558 2.159379 GGCTTGGCCTTATCGACAAAAG 60.159 50.000 3.32 0.00 46.69 2.27
6573 20560 1.459450 GGCTTGGCCTTATCGACAAA 58.541 50.000 3.32 0.00 46.69 2.83
6585 20572 2.413837 CTGTACGTATATGGGCTTGGC 58.586 52.381 0.00 0.00 0.00 4.52
6586 20573 2.224185 TGCTGTACGTATATGGGCTTGG 60.224 50.000 0.00 0.00 0.00 3.61
6587 20574 3.106242 TGCTGTACGTATATGGGCTTG 57.894 47.619 0.00 0.00 0.00 4.01
6589 20576 3.664107 CAATGCTGTACGTATATGGGCT 58.336 45.455 0.00 0.00 0.00 5.19
6590 20577 2.159627 GCAATGCTGTACGTATATGGGC 59.840 50.000 0.00 0.00 0.00 5.36
6592 20579 5.236263 TCTTTGCAATGCTGTACGTATATGG 59.764 40.000 6.82 0.00 0.00 2.74
6593 20580 6.129393 GTCTTTGCAATGCTGTACGTATATG 58.871 40.000 6.82 0.00 0.00 1.78
6594 20581 5.236478 GGTCTTTGCAATGCTGTACGTATAT 59.764 40.000 6.82 0.00 0.00 0.86
6595 20582 4.569162 GGTCTTTGCAATGCTGTACGTATA 59.431 41.667 6.82 0.00 0.00 1.47
6596 20583 3.374058 GGTCTTTGCAATGCTGTACGTAT 59.626 43.478 6.82 0.00 0.00 3.06
6597 20584 2.739913 GGTCTTTGCAATGCTGTACGTA 59.260 45.455 6.82 0.00 0.00 3.57
6598 20585 1.535462 GGTCTTTGCAATGCTGTACGT 59.465 47.619 6.82 0.00 0.00 3.57
6600 20587 3.428045 GGATGGTCTTTGCAATGCTGTAC 60.428 47.826 6.82 0.00 0.00 2.90
6602 20589 1.547372 GGATGGTCTTTGCAATGCTGT 59.453 47.619 6.82 0.00 0.00 4.40
6603 20590 1.822990 AGGATGGTCTTTGCAATGCTG 59.177 47.619 6.82 0.00 0.00 4.41
6607 20594 3.445096 GCTGTAAGGATGGTCTTTGCAAT 59.555 43.478 0.00 0.00 28.97 3.56
6608 20595 2.819608 GCTGTAAGGATGGTCTTTGCAA 59.180 45.455 0.00 0.00 28.97 4.08
6612 20599 2.678190 GCTCGCTGTAAGGATGGTCTTT 60.678 50.000 0.00 0.00 0.00 2.52
6613 20600 1.134670 GCTCGCTGTAAGGATGGTCTT 60.135 52.381 0.00 0.00 0.00 3.01
6614 20601 0.461961 GCTCGCTGTAAGGATGGTCT 59.538 55.000 0.00 0.00 0.00 3.85
6615 20602 0.461961 AGCTCGCTGTAAGGATGGTC 59.538 55.000 0.00 0.00 0.00 4.02
6616 20603 0.461961 GAGCTCGCTGTAAGGATGGT 59.538 55.000 0.00 0.00 0.00 3.55
6618 20605 0.749649 AGGAGCTCGCTGTAAGGATG 59.250 55.000 7.83 0.00 0.00 3.51
6619 20606 1.490574 AAGGAGCTCGCTGTAAGGAT 58.509 50.000 7.83 0.00 0.00 3.24
6620 20607 1.267121 AAAGGAGCTCGCTGTAAGGA 58.733 50.000 7.83 0.00 0.00 3.36
6621 20608 2.166664 AGTAAAGGAGCTCGCTGTAAGG 59.833 50.000 7.83 0.00 0.00 2.69
6625 20612 0.247736 CCAGTAAAGGAGCTCGCTGT 59.752 55.000 7.83 3.94 0.00 4.40
6626 20613 0.460987 CCCAGTAAAGGAGCTCGCTG 60.461 60.000 7.83 10.12 0.00 5.18
6627 20614 0.905337 ACCCAGTAAAGGAGCTCGCT 60.905 55.000 7.83 3.11 0.00 4.93
6628 20615 0.741221 CACCCAGTAAAGGAGCTCGC 60.741 60.000 7.83 0.47 0.00 5.03
6629 20616 0.108138 CCACCCAGTAAAGGAGCTCG 60.108 60.000 7.83 0.00 0.00 5.03
6630 20617 1.066071 GTCCACCCAGTAAAGGAGCTC 60.066 57.143 4.71 4.71 0.00 4.09
6632 20619 0.984995 AGTCCACCCAGTAAAGGAGC 59.015 55.000 0.00 0.00 0.00 4.70
6633 20620 2.257207 TCAGTCCACCCAGTAAAGGAG 58.743 52.381 0.00 0.00 0.00 3.69
6634 20621 2.409064 TCAGTCCACCCAGTAAAGGA 57.591 50.000 0.00 0.00 0.00 3.36
6635 20622 2.356125 CCATCAGTCCACCCAGTAAAGG 60.356 54.545 0.00 0.00 0.00 3.11
6636 20623 2.356125 CCCATCAGTCCACCCAGTAAAG 60.356 54.545 0.00 0.00 0.00 1.85
6637 20624 1.633432 CCCATCAGTCCACCCAGTAAA 59.367 52.381 0.00 0.00 0.00 2.01
6638 20625 1.285280 CCCATCAGTCCACCCAGTAA 58.715 55.000 0.00 0.00 0.00 2.24
6639 20626 1.271840 GCCCATCAGTCCACCCAGTA 61.272 60.000 0.00 0.00 0.00 2.74
6641 20628 1.929860 ATGCCCATCAGTCCACCCAG 61.930 60.000 0.00 0.00 0.00 4.45
6642 20629 1.930133 ATGCCCATCAGTCCACCCA 60.930 57.895 0.00 0.00 0.00 4.51
6643 20630 1.454479 CATGCCCATCAGTCCACCC 60.454 63.158 0.00 0.00 0.00 4.61
6644 20631 1.454479 CCATGCCCATCAGTCCACC 60.454 63.158 0.00 0.00 0.00 4.61
6645 20632 2.123428 GCCATGCCCATCAGTCCAC 61.123 63.158 0.00 0.00 0.00 4.02
6647 20634 1.152610 ATGCCATGCCCATCAGTCC 60.153 57.895 0.00 0.00 0.00 3.85
6648 20635 0.466739 TCATGCCATGCCCATCAGTC 60.467 55.000 0.00 0.00 0.00 3.51
6649 20636 0.032912 TTCATGCCATGCCCATCAGT 60.033 50.000 0.00 0.00 0.00 3.41
6650 20637 0.673985 CTTCATGCCATGCCCATCAG 59.326 55.000 0.00 0.00 0.00 2.90
6651 20638 1.396607 GCTTCATGCCATGCCCATCA 61.397 55.000 0.00 0.00 35.15 3.07
6652 20639 1.366366 GCTTCATGCCATGCCCATC 59.634 57.895 0.00 0.00 35.15 3.51
6653 20640 0.978667 TTGCTTCATGCCATGCCCAT 60.979 50.000 0.00 0.00 42.00 4.00
6654 20641 0.978667 ATTGCTTCATGCCATGCCCA 60.979 50.000 0.00 0.00 42.00 5.36
6655 20642 0.179468 AATTGCTTCATGCCATGCCC 59.821 50.000 0.00 0.00 42.00 5.36
6656 20643 1.134640 TGAATTGCTTCATGCCATGCC 60.135 47.619 0.00 0.00 42.00 4.40
6657 20644 2.159156 TCTGAATTGCTTCATGCCATGC 60.159 45.455 0.00 0.00 40.52 4.06
6658 20645 3.490933 CCTCTGAATTGCTTCATGCCATG 60.491 47.826 0.00 0.00 40.52 3.66
6659 20646 2.693591 CCTCTGAATTGCTTCATGCCAT 59.306 45.455 0.00 0.00 40.52 4.40
6660 20647 2.097036 CCTCTGAATTGCTTCATGCCA 58.903 47.619 0.00 0.00 40.52 4.92
6661 20648 2.097825 ACCTCTGAATTGCTTCATGCC 58.902 47.619 0.00 0.00 40.52 4.40
6662 20649 2.223203 CGACCTCTGAATTGCTTCATGC 60.223 50.000 0.00 0.00 40.52 4.06
6663 20650 2.353889 CCGACCTCTGAATTGCTTCATG 59.646 50.000 0.00 0.00 40.52 3.07
6664 20651 2.026822 ACCGACCTCTGAATTGCTTCAT 60.027 45.455 0.00 0.00 40.52 2.57
6665 20652 1.347707 ACCGACCTCTGAATTGCTTCA 59.652 47.619 0.00 0.00 39.07 3.02
6667 20654 1.813513 CACCGACCTCTGAATTGCTT 58.186 50.000 0.00 0.00 0.00 3.91
6669 20656 1.648467 GGCACCGACCTCTGAATTGC 61.648 60.000 0.00 0.00 0.00 3.56
6670 20657 0.036010 AGGCACCGACCTCTGAATTG 60.036 55.000 0.00 0.00 33.62 2.32
6672 20659 1.568504 TAAGGCACCGACCTCTGAAT 58.431 50.000 0.00 0.00 39.93 2.57
6674 20661 2.447408 TATAAGGCACCGACCTCTGA 57.553 50.000 0.00 0.00 39.93 3.27
6675 20662 3.069586 TCATTATAAGGCACCGACCTCTG 59.930 47.826 0.00 0.00 39.93 3.35
6676 20663 3.305720 TCATTATAAGGCACCGACCTCT 58.694 45.455 0.00 0.00 39.93 3.69
6679 20666 3.470645 ACTCATTATAAGGCACCGACC 57.529 47.619 0.00 0.00 0.00 4.79
6680 20667 8.033038 TGATAATACTCATTATAAGGCACCGAC 58.967 37.037 0.00 0.00 37.44 4.79
6682 20669 8.035394 ACTGATAATACTCATTATAAGGCACCG 58.965 37.037 6.67 0.00 38.93 4.94
6683 20670 9.372369 GACTGATAATACTCATTATAAGGCACC 57.628 37.037 3.56 0.00 41.09 5.01
6693 20680 9.147732 TGTACTGGATGACTGATAATACTCATT 57.852 33.333 0.00 0.00 0.00 2.57
6694 20681 8.712228 TGTACTGGATGACTGATAATACTCAT 57.288 34.615 0.00 0.00 0.00 2.90
6695 20682 8.533569 TTGTACTGGATGACTGATAATACTCA 57.466 34.615 0.00 0.00 0.00 3.41
6697 20684 8.634444 GTCTTGTACTGGATGACTGATAATACT 58.366 37.037 0.00 0.00 0.00 2.12
6698 20685 7.868415 GGTCTTGTACTGGATGACTGATAATAC 59.132 40.741 0.00 0.00 0.00 1.89
6700 20687 6.183361 GGGTCTTGTACTGGATGACTGATAAT 60.183 42.308 0.00 0.00 0.00 1.28
6701 20688 5.128827 GGGTCTTGTACTGGATGACTGATAA 59.871 44.000 0.00 0.00 0.00 1.75
6703 20690 3.452627 GGGTCTTGTACTGGATGACTGAT 59.547 47.826 0.00 0.00 0.00 2.90
6704 20691 2.832129 GGGTCTTGTACTGGATGACTGA 59.168 50.000 0.00 0.00 0.00 3.41
6705 20692 2.567169 TGGGTCTTGTACTGGATGACTG 59.433 50.000 0.00 0.00 0.00 3.51
6707 20694 2.093447 CCTGGGTCTTGTACTGGATGAC 60.093 54.545 0.00 0.00 0.00 3.06
6708 20695 2.187958 CCTGGGTCTTGTACTGGATGA 58.812 52.381 0.00 0.00 0.00 2.92
6712 20699 1.645710 ACTCCTGGGTCTTGTACTGG 58.354 55.000 0.00 0.00 0.00 4.00
6713 20700 2.632996 TGAACTCCTGGGTCTTGTACTG 59.367 50.000 0.00 0.00 31.77 2.74
6714 20701 2.972348 TGAACTCCTGGGTCTTGTACT 58.028 47.619 0.00 0.00 31.77 2.73
6715 20702 3.983044 ATGAACTCCTGGGTCTTGTAC 57.017 47.619 0.00 0.00 31.77 2.90
6717 20704 4.366267 AGATATGAACTCCTGGGTCTTGT 58.634 43.478 0.00 0.00 31.77 3.16
6718 20705 5.104776 TGAAGATATGAACTCCTGGGTCTTG 60.105 44.000 0.00 0.00 31.77 3.02
6720 20707 4.624913 TGAAGATATGAACTCCTGGGTCT 58.375 43.478 0.00 0.00 31.77 3.85
6721 20708 4.651503 TCTGAAGATATGAACTCCTGGGTC 59.348 45.833 0.00 0.00 0.00 4.46
6722 20709 4.624913 TCTGAAGATATGAACTCCTGGGT 58.375 43.478 0.00 0.00 0.00 4.51
6723 20710 5.620738 TTCTGAAGATATGAACTCCTGGG 57.379 43.478 0.00 0.00 0.00 4.45
6724 20711 6.705381 GTGATTCTGAAGATATGAACTCCTGG 59.295 42.308 0.00 0.00 0.00 4.45
6725 20712 6.705381 GGTGATTCTGAAGATATGAACTCCTG 59.295 42.308 0.00 0.00 0.00 3.86
6726 20713 6.614906 AGGTGATTCTGAAGATATGAACTCCT 59.385 38.462 0.00 0.00 0.00 3.69
6727 20714 6.705381 CAGGTGATTCTGAAGATATGAACTCC 59.295 42.308 0.00 0.00 36.93 3.85
6729 20716 7.046652 CACAGGTGATTCTGAAGATATGAACT 58.953 38.462 0.00 0.00 38.11 3.01
6730 20717 7.044181 TCACAGGTGATTCTGAAGATATGAAC 58.956 38.462 0.00 0.00 38.11 3.18
6731 20718 7.186570 TCACAGGTGATTCTGAAGATATGAA 57.813 36.000 0.00 0.00 38.11 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.