Multiple sequence alignment - TraesCS3A01G335300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G335300 chr3A 100.000 4336 0 0 1 4336 581396620 581392285 0.000000e+00 8008
1 TraesCS3A01G335300 chr3A 90.125 881 78 5 2652 3525 581613451 581612573 0.000000e+00 1136
2 TraesCS3A01G335300 chr3A 88.055 946 75 22 995 1920 581615677 581614750 0.000000e+00 1086
3 TraesCS3A01G335300 chr3A 85.743 1003 105 20 2666 3638 581603830 581602836 0.000000e+00 1026
4 TraesCS3A01G335300 chr3A 87.938 713 68 12 2655 3365 581382962 581382266 0.000000e+00 824
5 TraesCS3A01G335300 chr3A 85.520 808 82 16 2825 3600 581838542 581837738 0.000000e+00 811
6 TraesCS3A01G335300 chr3A 82.414 961 120 33 924 1857 581848543 581847605 0.000000e+00 793
7 TraesCS3A01G335300 chr3A 79.887 1059 154 37 995 2022 581372935 581371905 0.000000e+00 721
8 TraesCS3A01G335300 chr3A 86.067 567 54 15 991 1544 581840865 581840311 1.740000e-163 586
9 TraesCS3A01G335300 chr3A 82.411 705 81 29 924 1605 581387920 581387236 3.760000e-160 575
10 TraesCS3A01G335300 chr3A 85.812 437 48 6 2196 2632 581614562 581614140 6.610000e-123 451
11 TraesCS3A01G335300 chr3A 84.101 434 57 9 1590 2020 581840153 581839729 4.040000e-110 409
12 TraesCS3A01G335300 chr3A 87.819 353 29 5 3988 4336 581381710 581381368 6.750000e-108 401
13 TraesCS3A01G335300 chr3A 92.800 250 16 2 1608 1856 581386967 581386719 1.150000e-95 361
14 TraesCS3A01G335300 chr3A 77.708 637 78 33 3694 4300 581602847 581602245 8.990000e-87 331
15 TraesCS3A01G335300 chr3A 79.784 371 62 11 8 369 582285163 582284797 1.550000e-64 257
16 TraesCS3A01G335300 chr3A 86.400 125 16 1 1899 2022 581386721 581386597 7.560000e-28 135
17 TraesCS3A01G335300 chr3D 89.500 1000 88 10 2651 3642 441182995 441182005 0.000000e+00 1249
18 TraesCS3A01G335300 chr3D 86.290 1043 94 27 995 2020 441185327 441184317 0.000000e+00 1088
19 TraesCS3A01G335300 chr3D 86.037 1017 104 16 2651 3638 441174617 441173610 0.000000e+00 1057
20 TraesCS3A01G335300 chr3D 82.482 959 123 29 924 1857 441260612 441259674 0.000000e+00 798
21 TraesCS3A01G335300 chr3D 83.856 861 102 26 1017 1857 441176068 441175225 0.000000e+00 785
22 TraesCS3A01G335300 chr3D 85.986 735 71 12 2825 3527 441251318 441250584 0.000000e+00 758
23 TraesCS3A01G335300 chr3D 86.799 553 53 13 991 1534 441253367 441252826 2.230000e-167 599
24 TraesCS3A01G335300 chr3D 84.579 629 56 18 3694 4293 441173621 441173005 1.740000e-163 586
25 TraesCS3A01G335300 chr3D 86.041 437 46 6 2196 2632 441184187 441183766 5.110000e-124 455
26 TraesCS3A01G335300 chr3D 84.065 433 58 8 1590 2020 441252655 441252232 1.450000e-109 407
27 TraesCS3A01G335300 chr3D 79.784 371 57 15 8 369 441423146 441422785 2.000000e-63 254
28 TraesCS3A01G335300 chr3D 78.962 366 55 11 15 369 441261536 441261182 3.370000e-56 230
29 TraesCS3A01G335300 chr3B 85.447 1017 105 19 2651 3641 578603742 578602743 0.000000e+00 1018
30 TraesCS3A01G335300 chr3B 88.916 821 83 6 2825 3642 578612511 578611696 0.000000e+00 1005
31 TraesCS3A01G335300 chr3B 83.586 859 98 32 1022 1857 578605189 578604351 0.000000e+00 765
32 TraesCS3A01G335300 chr3B 81.439 959 131 33 924 1857 578810569 578809633 0.000000e+00 741
33 TraesCS3A01G335300 chr3B 85.608 674 62 18 3684 4336 578602767 578602108 0.000000e+00 675
34 TraesCS3A01G335300 chr3B 86.372 565 55 17 991 1545 578762803 578762251 8.030000e-167 597
35 TraesCS3A01G335300 chr3B 83.445 447 64 8 1576 2020 578762104 578761666 1.450000e-109 407
36 TraesCS3A01G335300 chr3B 78.409 440 60 22 15 442 578811485 578811069 2.000000e-63 254
37 TraesCS3A01G335300 chr3B 91.870 123 6 3 2023 2143 112100935 112100815 7.460000e-38 169
38 TraesCS3A01G335300 chr6B 83.510 849 105 18 2823 3642 696330359 696329517 0.000000e+00 760
39 TraesCS3A01G335300 chr6B 88.435 147 11 5 2023 2167 474647653 474647511 5.760000e-39 172
40 TraesCS3A01G335300 chr6B 89.888 89 9 0 2662 2750 4580096 4580008 9.850000e-22 115
41 TraesCS3A01G335300 chr6A 93.220 118 6 1 2023 2140 319204541 319204656 5.760000e-39 172
42 TraesCS3A01G335300 chr4B 93.277 119 5 2 2023 2141 518874512 518874397 5.760000e-39 172
43 TraesCS3A01G335300 chr4B 95.283 106 3 1 2023 2128 146013548 146013651 2.680000e-37 167
44 TraesCS3A01G335300 chr4B 83.893 149 19 4 2651 2796 666056746 666056892 2.100000e-28 137
45 TraesCS3A01G335300 chr5A 91.935 124 5 4 2023 2144 561167115 561167235 7.460000e-38 169
46 TraesCS3A01G335300 chr2B 91.935 124 4 5 2023 2143 359864806 359864686 7.460000e-38 169
47 TraesCS3A01G335300 chr4A 91.870 123 5 4 2023 2144 585399462 585399580 2.680000e-37 167
48 TraesCS3A01G335300 chr1A 91.870 123 4 4 2023 2143 547725946 547725828 2.680000e-37 167
49 TraesCS3A01G335300 chrUn 82.895 152 15 8 2651 2796 108217868 108217722 4.550000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G335300 chr3A 581392285 581396620 4335 True 8008.000000 8008 100.000000 1 4336 1 chr3A.!!$R2 4335
1 TraesCS3A01G335300 chr3A 581612573 581615677 3104 True 891.000000 1136 87.997333 995 3525 3 chr3A.!!$R7 2530
2 TraesCS3A01G335300 chr3A 581847605 581848543 938 True 793.000000 793 82.414000 924 1857 1 chr3A.!!$R3 933
3 TraesCS3A01G335300 chr3A 581371905 581372935 1030 True 721.000000 721 79.887000 995 2022 1 chr3A.!!$R1 1027
4 TraesCS3A01G335300 chr3A 581602245 581603830 1585 True 678.500000 1026 81.725500 2666 4300 2 chr3A.!!$R6 1634
5 TraesCS3A01G335300 chr3A 581837738 581840865 3127 True 602.000000 811 85.229333 991 3600 3 chr3A.!!$R8 2609
6 TraesCS3A01G335300 chr3A 581381368 581387920 6552 True 459.200000 824 87.473600 924 4336 5 chr3A.!!$R5 3412
7 TraesCS3A01G335300 chr3D 441182005 441185327 3322 True 930.666667 1249 87.277000 995 3642 3 chr3D.!!$R3 2647
8 TraesCS3A01G335300 chr3D 441173005 441176068 3063 True 809.333333 1057 84.824000 1017 4293 3 chr3D.!!$R2 3276
9 TraesCS3A01G335300 chr3D 441250584 441253367 2783 True 588.000000 758 85.616667 991 3527 3 chr3D.!!$R4 2536
10 TraesCS3A01G335300 chr3D 441259674 441261536 1862 True 514.000000 798 80.722000 15 1857 2 chr3D.!!$R5 1842
11 TraesCS3A01G335300 chr3B 578611696 578612511 815 True 1005.000000 1005 88.916000 2825 3642 1 chr3B.!!$R2 817
12 TraesCS3A01G335300 chr3B 578602108 578605189 3081 True 819.333333 1018 84.880333 1022 4336 3 chr3B.!!$R3 3314
13 TraesCS3A01G335300 chr3B 578761666 578762803 1137 True 502.000000 597 84.908500 991 2020 2 chr3B.!!$R4 1029
14 TraesCS3A01G335300 chr3B 578809633 578811485 1852 True 497.500000 741 79.924000 15 1857 2 chr3B.!!$R5 1842
15 TraesCS3A01G335300 chr6B 696329517 696330359 842 True 760.000000 760 83.510000 2823 3642 1 chr6B.!!$R3 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 524 0.034896 TCAGGGTTCACTTTCTCCGC 59.965 55.0 0.0 0.0 0.0 5.54 F
2043 2582 0.033109 GCAGCCTTTCCCCCTACATT 60.033 55.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2056 2595 0.179012 GGGTTCAAGTCCCGGAAACA 60.179 55.0 0.73 0.0 35.27 2.83 R
3971 8139 0.033504 CAGGTGCCAACTCGTGTACT 59.966 55.0 0.00 0.0 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.487934 CCATCTTCATGACCCTAAGCG 58.512 52.381 0.00 0.00 30.57 4.68
27 28 2.103094 CCATCTTCATGACCCTAAGCGA 59.897 50.000 0.00 0.00 30.57 4.93
37 38 7.276658 TCATGACCCTAAGCGAAAAACATATA 58.723 34.615 0.00 0.00 0.00 0.86
65 66 8.458843 AGGGATTTATCTTACAACAATTTGACG 58.541 33.333 2.79 0.00 36.48 4.35
71 72 1.686355 ACAACAATTTGACGGGAGCA 58.314 45.000 2.79 0.00 36.48 4.26
85 86 1.941325 GGAGCAATTCCAGACTACCG 58.059 55.000 0.00 0.00 46.01 4.02
90 91 4.694339 AGCAATTCCAGACTACCGAATAC 58.306 43.478 0.00 0.00 0.00 1.89
91 92 3.489785 GCAATTCCAGACTACCGAATACG 59.510 47.826 0.00 0.00 39.43 3.06
104 105 3.054276 CGAATACGGTCACTCAGAGTC 57.946 52.381 0.00 0.00 35.72 3.36
114 115 3.075148 TCACTCAGAGTCCTGTAAGTCG 58.925 50.000 0.00 0.00 41.16 4.18
115 116 3.075148 CACTCAGAGTCCTGTAAGTCGA 58.925 50.000 0.00 0.00 41.16 4.20
117 118 3.692101 ACTCAGAGTCCTGTAAGTCGATG 59.308 47.826 0.00 0.00 41.16 3.84
122 123 2.094494 AGTCCTGTAAGTCGATGTGCTG 60.094 50.000 0.00 0.00 0.00 4.41
124 125 2.760650 TCCTGTAAGTCGATGTGCTGAT 59.239 45.455 0.00 0.00 0.00 2.90
127 128 4.504461 CCTGTAAGTCGATGTGCTGATTAC 59.496 45.833 0.00 0.00 0.00 1.89
192 194 8.165239 AGTATTATTTCACAGCAACTTGTCAA 57.835 30.769 0.00 0.00 0.00 3.18
227 236 6.161381 CCAATCCCTGATTTTGTTCTTCAAG 58.839 40.000 0.00 0.00 37.35 3.02
229 238 4.803452 TCCCTGATTTTGTTCTTCAAGGT 58.197 39.130 0.00 0.00 37.35 3.50
231 240 5.660864 TCCCTGATTTTGTTCTTCAAGGTTT 59.339 36.000 0.00 0.00 37.35 3.27
261 270 3.253432 GGTCTGCTTGACTTAAGGTTTGG 59.747 47.826 7.53 0.00 44.74 3.28
262 271 2.884639 TCTGCTTGACTTAAGGTTTGGC 59.115 45.455 7.53 5.27 36.87 4.52
264 273 3.230134 TGCTTGACTTAAGGTTTGGCAT 58.770 40.909 7.53 0.00 36.87 4.40
265 274 3.640967 TGCTTGACTTAAGGTTTGGCATT 59.359 39.130 7.53 0.00 36.87 3.56
280 289 3.419943 TGGCATTCTCTGTTGCACAATA 58.580 40.909 0.00 0.00 40.66 1.90
282 291 3.441572 GGCATTCTCTGTTGCACAATACT 59.558 43.478 0.00 0.00 40.66 2.12
284 293 5.123820 GGCATTCTCTGTTGCACAATACTTA 59.876 40.000 0.00 0.00 40.66 2.24
285 294 6.349280 GGCATTCTCTGTTGCACAATACTTAA 60.349 38.462 0.00 0.00 40.66 1.85
286 295 7.083858 GCATTCTCTGTTGCACAATACTTAAA 58.916 34.615 0.00 0.00 38.72 1.52
287 296 7.594758 GCATTCTCTGTTGCACAATACTTAAAA 59.405 33.333 0.00 0.00 38.72 1.52
288 297 9.462174 CATTCTCTGTTGCACAATACTTAAAAA 57.538 29.630 0.00 0.00 0.00 1.94
319 330 9.221933 TGAATGTTACAAAATTCCGTACTACAT 57.778 29.630 3.05 0.00 32.81 2.29
355 366 4.642429 AGATCAGAGTAAACAACCACACC 58.358 43.478 0.00 0.00 0.00 4.16
356 367 4.348168 AGATCAGAGTAAACAACCACACCT 59.652 41.667 0.00 0.00 0.00 4.00
365 376 8.301252 AGTAAACAACCACACCTAAAAGAAAT 57.699 30.769 0.00 0.00 0.00 2.17
369 380 5.243060 ACAACCACACCTAAAAGAAATAGGC 59.757 40.000 0.00 0.00 43.14 3.93
371 382 5.254115 ACCACACCTAAAAGAAATAGGCTC 58.746 41.667 0.00 0.00 43.14 4.70
372 383 5.222048 ACCACACCTAAAAGAAATAGGCTCA 60.222 40.000 0.00 0.00 43.14 4.26
374 385 6.378280 CCACACCTAAAAGAAATAGGCTCAAT 59.622 38.462 0.00 0.00 43.14 2.57
376 387 6.316390 ACACCTAAAAGAAATAGGCTCAATCG 59.684 38.462 0.00 0.00 43.14 3.34
377 388 5.823045 ACCTAAAAGAAATAGGCTCAATCGG 59.177 40.000 0.00 0.00 43.14 4.18
378 389 6.055588 CCTAAAAGAAATAGGCTCAATCGGA 58.944 40.000 0.00 0.00 33.96 4.55
380 391 6.442513 AAAAGAAATAGGCTCAATCGGAAG 57.557 37.500 0.00 0.00 0.00 3.46
381 392 4.762289 AGAAATAGGCTCAATCGGAAGT 57.238 40.909 0.00 0.00 0.00 3.01
382 393 5.104259 AGAAATAGGCTCAATCGGAAGTT 57.896 39.130 0.00 0.00 0.00 2.66
383 394 6.235231 AGAAATAGGCTCAATCGGAAGTTA 57.765 37.500 0.00 0.00 0.00 2.24
384 395 6.284459 AGAAATAGGCTCAATCGGAAGTTAG 58.716 40.000 0.00 0.00 0.00 2.34
385 396 5.615925 AATAGGCTCAATCGGAAGTTAGT 57.384 39.130 0.00 0.00 0.00 2.24
386 397 3.983044 AGGCTCAATCGGAAGTTAGTT 57.017 42.857 0.00 0.00 0.00 2.24
387 398 6.726490 ATAGGCTCAATCGGAAGTTAGTTA 57.274 37.500 0.00 0.00 0.00 2.24
388 399 5.615925 AGGCTCAATCGGAAGTTAGTTAT 57.384 39.130 0.00 0.00 0.00 1.89
389 400 5.602628 AGGCTCAATCGGAAGTTAGTTATC 58.397 41.667 0.00 0.00 0.00 1.75
390 401 5.128827 AGGCTCAATCGGAAGTTAGTTATCA 59.871 40.000 0.00 0.00 0.00 2.15
391 402 5.992217 GGCTCAATCGGAAGTTAGTTATCAT 59.008 40.000 0.00 0.00 0.00 2.45
392 403 6.483640 GGCTCAATCGGAAGTTAGTTATCATT 59.516 38.462 0.00 0.00 0.00 2.57
393 404 7.348201 GCTCAATCGGAAGTTAGTTATCATTG 58.652 38.462 0.00 0.00 0.00 2.82
394 405 7.519008 GCTCAATCGGAAGTTAGTTATCATTGG 60.519 40.741 0.00 0.00 0.00 3.16
395 406 6.765989 TCAATCGGAAGTTAGTTATCATTGGG 59.234 38.462 0.00 0.00 0.00 4.12
396 407 5.943349 TCGGAAGTTAGTTATCATTGGGA 57.057 39.130 0.00 0.00 0.00 4.37
473 484 7.826260 AAAAATTATTTGGTTCATAGCCACG 57.174 32.000 0.00 0.00 35.46 4.94
485 496 0.107831 TAGCCACGCTTCACCAAACT 59.892 50.000 0.00 0.00 40.44 2.66
489 500 2.489971 CCACGCTTCACCAAACTAGAA 58.510 47.619 0.00 0.00 0.00 2.10
494 505 5.408604 CACGCTTCACCAAACTAGAATTACT 59.591 40.000 0.00 0.00 0.00 2.24
497 508 6.183360 CGCTTCACCAAACTAGAATTACTCAG 60.183 42.308 0.00 0.00 0.00 3.35
499 510 6.049955 TCACCAAACTAGAATTACTCAGGG 57.950 41.667 0.00 0.00 0.00 4.45
502 513 6.371825 CACCAAACTAGAATTACTCAGGGTTC 59.628 42.308 0.00 0.00 0.00 3.62
510 521 6.468543 AGAATTACTCAGGGTTCACTTTCTC 58.531 40.000 0.00 0.00 0.00 2.87
511 522 4.618920 TTACTCAGGGTTCACTTTCTCC 57.381 45.455 0.00 0.00 0.00 3.71
513 524 0.034896 TCAGGGTTCACTTTCTCCGC 59.965 55.000 0.00 0.00 0.00 5.54
514 525 0.250295 CAGGGTTCACTTTCTCCGCA 60.250 55.000 0.00 0.00 0.00 5.69
518 529 1.583054 GTTCACTTTCTCCGCACACT 58.417 50.000 0.00 0.00 0.00 3.55
519 530 2.547218 GGTTCACTTTCTCCGCACACTA 60.547 50.000 0.00 0.00 0.00 2.74
527 538 3.965379 TCTCCGCACACTATTTGGTTA 57.035 42.857 0.00 0.00 0.00 2.85
542 554 9.832445 ACTATTTGGTTAGTGATATACTTGTGG 57.168 33.333 0.00 0.00 40.89 4.17
545 557 3.493503 GGTTAGTGATATACTTGTGGCGC 59.506 47.826 0.00 0.00 40.89 6.53
557 569 3.770040 TGGCGCGCCATACTGTCT 61.770 61.111 46.88 0.00 41.89 3.41
560 572 1.215655 GGCGCGCCATACTGTCTTAG 61.216 60.000 43.55 0.00 35.81 2.18
564 576 0.249073 CGCCATACTGTCTTAGCGCT 60.249 55.000 17.26 17.26 36.89 5.92
568 669 2.608261 CCATACTGTCTTAGCGCTAGCC 60.608 54.545 17.98 9.86 46.67 3.93
578 679 2.662596 CGCTAGCCCCACTTGTCA 59.337 61.111 9.66 0.00 0.00 3.58
581 682 1.134521 CGCTAGCCCCACTTGTCATAA 60.135 52.381 9.66 0.00 0.00 1.90
583 684 2.683362 GCTAGCCCCACTTGTCATAAAC 59.317 50.000 2.29 0.00 0.00 2.01
584 685 2.969821 AGCCCCACTTGTCATAAACA 57.030 45.000 0.00 0.00 35.59 2.83
588 689 3.129287 GCCCCACTTGTCATAAACATGAG 59.871 47.826 0.00 0.00 37.82 2.90
590 691 4.012374 CCCACTTGTCATAAACATGAGCT 58.988 43.478 0.00 0.00 37.82 4.09
591 692 4.095483 CCCACTTGTCATAAACATGAGCTC 59.905 45.833 6.82 6.82 37.82 4.09
595 696 7.201591 CCACTTGTCATAAACATGAGCTCTTAG 60.202 40.741 16.19 7.16 37.82 2.18
596 697 6.820656 ACTTGTCATAAACATGAGCTCTTAGG 59.179 38.462 16.19 7.00 37.82 2.69
605 706 7.951347 AACATGAGCTCTTAGGAAATTTGAT 57.049 32.000 16.19 0.00 0.00 2.57
606 707 7.951347 ACATGAGCTCTTAGGAAATTTGATT 57.049 32.000 16.19 0.00 0.00 2.57
615 716 9.846248 CTCTTAGGAAATTTGATTAAGTTGTGG 57.154 33.333 0.00 0.00 0.00 4.17
625 726 4.346418 TGATTAAGTTGTGGTGGCCAATTT 59.654 37.500 7.24 0.00 34.18 1.82
626 727 2.618442 AAGTTGTGGTGGCCAATTTG 57.382 45.000 7.24 0.00 34.18 2.32
641 742 2.364970 CAATTTGGGTGCCACAAGAAGA 59.635 45.455 0.00 0.00 30.78 2.87
664 765 3.672293 AAGCCACACTTCCGCATG 58.328 55.556 0.00 0.00 30.77 4.06
670 771 0.457166 CACACTTCCGCATGGCATTG 60.457 55.000 0.00 0.00 34.14 2.82
678 779 0.858583 CGCATGGCATTGCATTGATG 59.141 50.000 12.66 8.88 42.91 3.07
693 794 1.630223 TGATGCAAACATGCCCTCAA 58.370 45.000 0.00 0.00 36.35 3.02
696 797 2.459060 TGCAAACATGCCCTCAATTG 57.541 45.000 0.00 0.00 0.00 2.32
699 800 2.070783 CAAACATGCCCTCAATTGCAC 58.929 47.619 0.00 0.00 40.88 4.57
701 802 1.140161 CATGCCCTCAATTGCACGG 59.860 57.895 0.00 0.75 40.88 4.94
705 807 1.312371 GCCCTCAATTGCACGGCTAA 61.312 55.000 17.90 0.00 36.65 3.09
712 816 4.450976 TCAATTGCACGGCTAACATCTAT 58.549 39.130 0.00 0.00 0.00 1.98
713 817 4.511454 TCAATTGCACGGCTAACATCTATC 59.489 41.667 0.00 0.00 0.00 2.08
715 819 3.097877 TGCACGGCTAACATCTATCAG 57.902 47.619 0.00 0.00 0.00 2.90
716 820 2.693074 TGCACGGCTAACATCTATCAGA 59.307 45.455 0.00 0.00 0.00 3.27
723 827 9.809096 CACGGCTAACATCTATCAGATATAAAT 57.191 33.333 0.00 0.00 32.12 1.40
745 849 7.494922 AATGCTTTGTTATCTATGGGGTTTT 57.505 32.000 0.00 0.00 0.00 2.43
746 850 6.279513 TGCTTTGTTATCTATGGGGTTTTG 57.720 37.500 0.00 0.00 0.00 2.44
748 852 6.071616 TGCTTTGTTATCTATGGGGTTTTGAC 60.072 38.462 0.00 0.00 0.00 3.18
750 854 7.524698 GCTTTGTTATCTATGGGGTTTTGACAA 60.525 37.037 0.00 0.00 0.00 3.18
755 859 5.165961 TCTATGGGGTTTTGACAAGAGAG 57.834 43.478 0.00 0.00 0.00 3.20
756 860 2.656947 TGGGGTTTTGACAAGAGAGG 57.343 50.000 0.00 0.00 0.00 3.69
764 869 5.408909 GGTTTTGACAAGAGAGGTAGTAAGC 59.591 44.000 0.00 0.00 0.00 3.09
767 872 4.408276 TGACAAGAGAGGTAGTAAGCACT 58.592 43.478 0.00 0.00 38.91 4.40
794 899 7.270757 AGTAACTGCACATGATTTACAAACA 57.729 32.000 0.00 0.00 0.00 2.83
797 902 9.619316 GTAACTGCACATGATTTACAAACAATA 57.381 29.630 0.00 0.00 0.00 1.90
802 907 9.786105 TGCACATGATTTACAAACAATATAGTG 57.214 29.630 0.00 0.00 0.00 2.74
830 937 8.157476 TCCTTTAAAGTGCATAGAAGAGAAACT 58.843 33.333 14.03 0.00 0.00 2.66
854 962 9.555727 ACTATAAAGTTGTTCTTTTAGACTGCA 57.444 29.630 0.00 0.00 42.95 4.41
868 976 8.560355 TTTTAGACTGCATAGATGTTTAGCAA 57.440 30.769 0.00 0.00 34.45 3.91
869 977 8.560355 TTTAGACTGCATAGATGTTTAGCAAA 57.440 30.769 0.00 0.00 34.45 3.68
870 978 6.428385 AGACTGCATAGATGTTTAGCAAAC 57.572 37.500 0.00 5.22 41.73 2.93
879 987 3.708563 TGTTTAGCAAACAGGCTCAAC 57.291 42.857 9.46 5.52 45.79 3.18
881 989 3.699038 TGTTTAGCAAACAGGCTCAACTT 59.301 39.130 11.90 0.00 45.79 2.66
882 990 4.202010 TGTTTAGCAAACAGGCTCAACTTC 60.202 41.667 11.90 0.00 45.79 3.01
883 991 2.355010 AGCAAACAGGCTCAACTTCT 57.645 45.000 0.00 0.00 41.05 2.85
884 992 3.492102 AGCAAACAGGCTCAACTTCTA 57.508 42.857 0.00 0.00 41.05 2.10
885 993 3.820557 AGCAAACAGGCTCAACTTCTAA 58.179 40.909 0.00 0.00 41.05 2.10
886 994 4.401925 AGCAAACAGGCTCAACTTCTAAT 58.598 39.130 0.00 0.00 41.05 1.73
887 995 4.457257 AGCAAACAGGCTCAACTTCTAATC 59.543 41.667 0.00 0.00 41.05 1.75
888 996 4.216257 GCAAACAGGCTCAACTTCTAATCA 59.784 41.667 0.00 0.00 0.00 2.57
889 997 5.105997 GCAAACAGGCTCAACTTCTAATCAT 60.106 40.000 0.00 0.00 0.00 2.45
890 998 6.094048 GCAAACAGGCTCAACTTCTAATCATA 59.906 38.462 0.00 0.00 0.00 2.15
891 999 7.362056 GCAAACAGGCTCAACTTCTAATCATAA 60.362 37.037 0.00 0.00 0.00 1.90
892 1000 8.680903 CAAACAGGCTCAACTTCTAATCATAAT 58.319 33.333 0.00 0.00 0.00 1.28
893 1001 8.814038 AACAGGCTCAACTTCTAATCATAATT 57.186 30.769 0.00 0.00 0.00 1.40
894 1002 8.814038 ACAGGCTCAACTTCTAATCATAATTT 57.186 30.769 0.00 0.00 0.00 1.82
895 1003 9.247861 ACAGGCTCAACTTCTAATCATAATTTT 57.752 29.630 0.00 0.00 0.00 1.82
930 1038 4.715527 AGCCAAGATCTTCTGAAAATGC 57.284 40.909 4.57 0.00 0.00 3.56
935 1043 3.022406 AGATCTTCTGAAAATGCAGGCC 58.978 45.455 0.00 0.00 36.55 5.19
986 1094 7.959689 ATAATTGATAGAGCAGTTGTAGCTG 57.040 36.000 0.00 0.00 43.58 4.24
988 1096 5.604758 TTGATAGAGCAGTTGTAGCTGAT 57.395 39.130 0.00 0.00 43.58 2.90
989 1097 5.604758 TGATAGAGCAGTTGTAGCTGATT 57.395 39.130 0.00 0.00 43.58 2.57
993 1101 8.040727 TGATAGAGCAGTTGTAGCTGATTTTTA 58.959 33.333 0.00 0.00 43.58 1.52
1020 1146 2.535012 TGTTGTGTAATCGCCTCACA 57.465 45.000 0.00 0.00 39.76 3.58
1051 1177 3.385755 AGGCAATCCCATATGCTCAAAAC 59.614 43.478 0.00 0.00 42.20 2.43
1086 1215 5.597813 ACTGCTCAAATAAGAAGAACACG 57.402 39.130 0.00 0.00 0.00 4.49
1089 1221 6.128445 ACTGCTCAAATAAGAAGAACACGATG 60.128 38.462 0.00 0.00 0.00 3.84
1126 1258 3.735208 CGCAGTGATAGTTCCTGTGGTAG 60.735 52.174 0.00 0.00 34.03 3.18
1217 1351 8.644318 ATGCTCTAAAATTTCTTTCATCATGC 57.356 30.769 0.00 0.00 0.00 4.06
1218 1352 7.604549 TGCTCTAAAATTTCTTTCATCATGCA 58.395 30.769 0.00 0.00 0.00 3.96
1219 1353 8.089597 TGCTCTAAAATTTCTTTCATCATGCAA 58.910 29.630 0.00 0.00 0.00 4.08
1225 1359 3.159213 TCTTTCATCATGCAAGGTGGT 57.841 42.857 1.78 0.00 0.00 4.16
1226 1360 4.299586 TCTTTCATCATGCAAGGTGGTA 57.700 40.909 1.78 0.00 0.00 3.25
1227 1361 4.661222 TCTTTCATCATGCAAGGTGGTAA 58.339 39.130 1.78 0.00 0.00 2.85
1228 1362 5.076182 TCTTTCATCATGCAAGGTGGTAAA 58.924 37.500 1.78 0.00 0.00 2.01
1229 1363 4.782019 TTCATCATGCAAGGTGGTAAAC 57.218 40.909 1.78 0.00 0.00 2.01
1230 1364 3.760738 TCATCATGCAAGGTGGTAAACA 58.239 40.909 1.78 0.00 0.00 2.83
1250 1384 9.250624 GTAAACAACTAGACATTATAGAGCAGG 57.749 37.037 0.00 0.00 0.00 4.85
1254 1388 7.343316 ACAACTAGACATTATAGAGCAGGTTCT 59.657 37.037 0.00 0.00 0.00 3.01
1295 1431 3.427161 ACAAAACTTTGACTCTGCAGC 57.573 42.857 9.47 0.00 40.55 5.25
1299 1435 1.953559 ACTTTGACTCTGCAGCGAAA 58.046 45.000 11.40 1.61 0.00 3.46
1362 1498 9.429359 GAAACTCCACTACATATTGATATCAGG 57.571 37.037 5.39 0.70 0.00 3.86
1437 1573 5.502089 TTGGAAAAGGAGGTTTCGGTATA 57.498 39.130 0.00 0.00 38.21 1.47
1588 1844 3.648339 ACACACAATAAGGCTGCAAAG 57.352 42.857 0.50 0.00 0.00 2.77
1700 2222 3.595173 GTGCAAACCTTGTCCAAAGTTT 58.405 40.909 0.00 1.81 35.88 2.66
1824 2347 6.599356 AAGAGGAGGTTTCTCTCTTAACTC 57.401 41.667 0.00 0.00 40.37 3.01
1864 2388 7.891183 TCAAACATAGTTGACTTCTCTTAGC 57.109 36.000 0.00 0.00 32.56 3.09
1880 2406 5.012664 TCTCTTAGCTACAACCAATCCAACA 59.987 40.000 0.00 0.00 0.00 3.33
1935 2471 7.327975 TCGACATTTACAGAGACCATTTGTAT 58.672 34.615 0.00 0.00 0.00 2.29
2022 2561 6.411376 TGACCAGTTCAGAGTTTTACTTTCA 58.589 36.000 0.00 0.00 0.00 2.69
2023 2562 6.315393 TGACCAGTTCAGAGTTTTACTTTCAC 59.685 38.462 0.00 0.00 0.00 3.18
2025 2564 5.198274 CAGTTCAGAGTTTTACTTTCACGC 58.802 41.667 0.00 0.00 0.00 5.34
2027 2566 5.006746 AGTTCAGAGTTTTACTTTCACGCAG 59.993 40.000 0.00 0.00 0.00 5.18
2028 2567 3.247648 TCAGAGTTTTACTTTCACGCAGC 59.752 43.478 0.00 0.00 0.00 5.25
2030 2569 2.548480 GAGTTTTACTTTCACGCAGCCT 59.452 45.455 0.00 0.00 0.00 4.58
2031 2570 2.949644 AGTTTTACTTTCACGCAGCCTT 59.050 40.909 0.00 0.00 0.00 4.35
2032 2571 3.380320 AGTTTTACTTTCACGCAGCCTTT 59.620 39.130 0.00 0.00 0.00 3.11
2034 2573 1.519408 TACTTTCACGCAGCCTTTCC 58.481 50.000 0.00 0.00 0.00 3.13
2035 2574 1.172812 ACTTTCACGCAGCCTTTCCC 61.173 55.000 0.00 0.00 0.00 3.97
2037 2576 3.860930 TTCACGCAGCCTTTCCCCC 62.861 63.158 0.00 0.00 0.00 5.40
2038 2577 4.351054 CACGCAGCCTTTCCCCCT 62.351 66.667 0.00 0.00 0.00 4.79
2039 2578 2.609610 ACGCAGCCTTTCCCCCTA 60.610 61.111 0.00 0.00 0.00 3.53
2040 2579 2.124695 CGCAGCCTTTCCCCCTAC 60.125 66.667 0.00 0.00 0.00 3.18
2041 2580 2.966732 CGCAGCCTTTCCCCCTACA 61.967 63.158 0.00 0.00 0.00 2.74
2042 2581 1.615262 GCAGCCTTTCCCCCTACAT 59.385 57.895 0.00 0.00 0.00 2.29
2043 2582 0.033109 GCAGCCTTTCCCCCTACATT 60.033 55.000 0.00 0.00 0.00 2.71
2044 2583 1.619704 GCAGCCTTTCCCCCTACATTT 60.620 52.381 0.00 0.00 0.00 2.32
2045 2584 2.379005 CAGCCTTTCCCCCTACATTTC 58.621 52.381 0.00 0.00 0.00 2.17
2046 2585 2.024941 CAGCCTTTCCCCCTACATTTCT 60.025 50.000 0.00 0.00 0.00 2.52
2047 2586 2.024941 AGCCTTTCCCCCTACATTTCTG 60.025 50.000 0.00 0.00 0.00 3.02
2048 2587 2.291605 GCCTTTCCCCCTACATTTCTGT 60.292 50.000 0.00 0.00 39.49 3.41
2049 2588 3.053917 GCCTTTCCCCCTACATTTCTGTA 60.054 47.826 0.00 0.00 36.79 2.74
2067 2606 0.611714 TAAGAGGCTGTTTCCGGGAC 59.388 55.000 0.90 1.11 0.00 4.46
2068 2607 1.128188 AAGAGGCTGTTTCCGGGACT 61.128 55.000 0.00 0.00 0.00 3.85
2069 2608 1.128188 AGAGGCTGTTTCCGGGACTT 61.128 55.000 0.00 0.00 0.00 3.01
2070 2609 0.955919 GAGGCTGTTTCCGGGACTTG 60.956 60.000 0.00 0.32 0.00 3.16
2073 2612 0.591659 GCTGTTTCCGGGACTTGAAC 59.408 55.000 0.00 0.00 0.00 3.18
2074 2613 1.235724 CTGTTTCCGGGACTTGAACC 58.764 55.000 0.00 0.00 0.00 3.62
2075 2614 0.179012 TGTTTCCGGGACTTGAACCC 60.179 55.000 0.00 0.00 43.57 4.11
2081 2620 3.266240 GGGACTTGAACCCATGACC 57.734 57.895 0.00 0.00 46.05 4.02
2082 2621 0.698818 GGGACTTGAACCCATGACCT 59.301 55.000 0.00 0.00 46.05 3.85
2084 2623 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
2085 2624 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
2097 2636 1.003355 ACCTCATGGTCACAAGGCG 60.003 57.895 0.00 0.00 44.78 5.52
2098 2637 1.746615 CCTCATGGTCACAAGGCGG 60.747 63.158 0.00 0.00 0.00 6.13
2099 2638 2.359850 TCATGGTCACAAGGCGGC 60.360 61.111 0.00 0.00 0.00 6.53
2100 2639 2.672651 CATGGTCACAAGGCGGCA 60.673 61.111 13.08 0.00 0.00 5.69
2101 2640 2.360350 ATGGTCACAAGGCGGCAG 60.360 61.111 13.08 5.73 0.00 4.85
2104 2643 2.980233 GTCACAAGGCGGCAGCTT 60.980 61.111 13.08 0.00 44.37 3.74
2105 2644 2.203337 TCACAAGGCGGCAGCTTT 60.203 55.556 13.08 4.21 43.84 3.51
2107 2646 1.210155 CACAAGGCGGCAGCTTTAC 59.790 57.895 13.08 0.00 40.92 2.01
2108 2647 1.971695 ACAAGGCGGCAGCTTTACC 60.972 57.895 13.08 0.00 40.92 2.85
2109 2648 1.971167 CAAGGCGGCAGCTTTACCA 60.971 57.895 13.08 0.00 40.92 3.25
2110 2649 1.971695 AAGGCGGCAGCTTTACCAC 60.972 57.895 13.08 0.00 41.08 4.16
2111 2650 2.359975 GGCGGCAGCTTTACCACT 60.360 61.111 9.17 0.00 44.37 4.00
2112 2651 2.690778 GGCGGCAGCTTTACCACTG 61.691 63.158 9.17 0.00 44.37 3.66
2119 2658 1.210155 GCTTTACCACTGCGGCAAG 59.790 57.895 3.44 0.00 39.03 4.01
2120 2659 1.875963 CTTTACCACTGCGGCAAGG 59.124 57.895 16.86 16.86 39.03 3.61
2122 2661 2.690653 TTTACCACTGCGGCAAGGCT 62.691 55.000 18.01 9.92 39.03 4.58
2149 5304 6.128282 CCCTCCGTTATCAATATATTGTGCAC 60.128 42.308 21.89 10.75 38.84 4.57
2153 5312 6.370593 CGTTATCAATATATTGTGCACCCAC 58.629 40.000 21.89 10.99 42.40 4.61
2174 5333 8.049721 ACCCACAAAAATAAAATTTGACAGGAA 58.950 29.630 6.05 0.00 39.56 3.36
2186 5345 6.803154 ATTTGACAGGAACTACTTGTAAGC 57.197 37.500 0.00 0.00 38.90 3.09
2187 5346 4.948341 TGACAGGAACTACTTGTAAGCA 57.052 40.909 0.00 0.00 38.90 3.91
2188 5347 4.883083 TGACAGGAACTACTTGTAAGCAG 58.117 43.478 0.00 0.00 38.90 4.24
2189 5348 4.344102 TGACAGGAACTACTTGTAAGCAGT 59.656 41.667 0.00 0.00 38.90 4.40
2190 5349 5.537295 TGACAGGAACTACTTGTAAGCAGTA 59.463 40.000 0.00 0.00 38.90 2.74
2191 5350 5.780984 ACAGGAACTACTTGTAAGCAGTAC 58.219 41.667 0.00 0.00 37.05 2.73
2192 5351 5.539193 ACAGGAACTACTTGTAAGCAGTACT 59.461 40.000 0.00 0.00 37.05 2.73
2193 5352 5.864474 CAGGAACTACTTGTAAGCAGTACTG 59.136 44.000 18.93 18.93 36.02 2.74
2194 5353 9.815996 ACAGGAACTACTTGTAAGCAGTACTGC 62.816 44.444 35.56 35.56 45.32 4.40
2238 5398 5.710567 ACTCTAAAACCAAACTATTCTGGCC 59.289 40.000 0.00 0.00 36.03 5.36
2239 5399 5.636123 TCTAAAACCAAACTATTCTGGCCA 58.364 37.500 4.71 4.71 36.03 5.36
2315 5479 8.610035 GGTATAGTTGATTGCCTAAAGTGTTAC 58.390 37.037 0.00 0.00 0.00 2.50
2335 5499 3.464907 ACTGCTGCTGCTAGTCAATATG 58.535 45.455 17.00 0.00 40.48 1.78
2351 5515 6.213600 AGTCAATATGGTTGAGTTGGTAGACT 59.786 38.462 0.00 0.00 0.00 3.24
2357 5521 7.923414 ATGGTTGAGTTGGTAGACTTAATTC 57.077 36.000 0.00 0.00 29.48 2.17
2358 5522 6.235664 TGGTTGAGTTGGTAGACTTAATTCC 58.764 40.000 0.00 0.00 29.48 3.01
2364 5528 4.755266 TGGTAGACTTAATTCCCTCTGC 57.245 45.455 0.00 0.00 0.00 4.26
2365 5529 3.454812 TGGTAGACTTAATTCCCTCTGCC 59.545 47.826 6.43 6.43 36.38 4.85
2386 5553 6.351711 TGCCTAGATACTCGACTAACAAGTA 58.648 40.000 0.00 0.00 0.00 2.24
2393 5560 4.952460 ACTCGACTAACAAGTAAGGCAAA 58.048 39.130 0.00 0.00 0.00 3.68
2427 5595 7.064016 GCATCCTAGAGCTGCATATACTTAAAC 59.936 40.741 1.02 0.00 35.96 2.01
2462 5631 5.812642 GGCATGGTCATAGATATTCGGTAAG 59.187 44.000 0.00 0.00 0.00 2.34
2478 5647 5.808380 TTCGGTAAGAAATTTGGGCTACCAT 60.808 40.000 0.00 0.00 40.51 3.55
2509 5687 4.081406 TCTTAGTCAAAAGCATGGCATGT 58.919 39.130 26.94 12.32 0.00 3.21
2584 5763 9.757227 AAAGCAACTAGAGAGATATGTATTCAC 57.243 33.333 0.00 0.00 0.00 3.18
2585 5764 8.704849 AGCAACTAGAGAGATATGTATTCACT 57.295 34.615 0.00 0.00 0.00 3.41
2586 5765 9.800572 AGCAACTAGAGAGATATGTATTCACTA 57.199 33.333 0.00 0.00 0.00 2.74
2614 5794 8.103305 TCAGAGAATACTTCAATAGCTTGGTTT 58.897 33.333 0.00 0.00 32.95 3.27
2673 6754 8.986477 ATTCAAATGACACTTACTAATTTGGC 57.014 30.769 6.59 0.00 38.29 4.52
2681 6762 9.674068 TGACACTTACTAATTTGGCATGTATTA 57.326 29.630 0.00 0.00 0.00 0.98
2692 6774 7.801716 TTTGGCATGTATTAATACAGGAGAC 57.198 36.000 33.29 25.12 45.08 3.36
2734 6816 4.668576 ACAACGACTTCATATTGCACTG 57.331 40.909 0.00 0.00 0.00 3.66
2750 6832 0.692476 ACTGGATGCTGCACAAGGTA 59.308 50.000 3.57 0.00 0.00 3.08
2753 6835 1.369091 GGATGCTGCACAAGGTACGG 61.369 60.000 3.57 0.00 0.00 4.02
2756 6838 0.391130 TGCTGCACAAGGTACGGATC 60.391 55.000 0.00 0.00 0.00 3.36
2827 6920 8.806429 TTCTTTCTTTTGAGGTGATGCATATA 57.194 30.769 0.00 0.00 0.00 0.86
2843 6938 9.171877 TGATGCATATATGTGTGTTCAAAGTAA 57.828 29.630 14.14 0.00 0.00 2.24
2854 6950 7.593273 TGTGTGTTCAAAGTAAGAGTTTTGTTG 59.407 33.333 0.00 0.00 36.09 3.33
2948 7044 6.627087 AACATCCTTCTGGACAAGAATCTA 57.373 37.500 0.00 0.00 46.51 1.98
3068 7170 3.411446 TGAGTACCATGCAACTTTCCAG 58.589 45.455 0.00 0.00 0.00 3.86
3074 7176 1.610038 CATGCAACTTTCCAGCTCACA 59.390 47.619 0.00 0.00 0.00 3.58
3118 7220 0.391661 GGCATCGTGCTCTTGGAGAA 60.392 55.000 9.31 0.00 44.28 2.87
3199 7301 1.931172 GCGGCAAAAGATAGCTAACGA 59.069 47.619 0.00 0.00 0.00 3.85
3212 7314 1.059264 GCTAACGACAGCATTCACGAC 59.941 52.381 7.91 0.00 41.40 4.34
3249 7351 0.941463 GCTGGATCTGTACGATGCCG 60.941 60.000 13.50 9.90 39.51 5.69
3334 7436 0.606401 ACCATGACCGAGGTTGCTTG 60.606 55.000 0.00 0.00 33.39 4.01
3341 7443 0.890996 CCGAGGTTGCTTGAAGGCTT 60.891 55.000 0.00 0.00 0.00 4.35
3413 7536 4.671831 TGGATAGTGAAATTCCAAGGCAA 58.328 39.130 0.00 0.00 36.62 4.52
3455 7587 1.001145 ACGTAACGAGGGGAGCTCT 60.001 57.895 14.64 0.00 0.00 4.09
3509 7653 1.048601 TGAGCCTCTTTTCTGGACGT 58.951 50.000 0.00 0.00 0.00 4.34
3540 7686 5.278120 GGAAACGCCTACTGTGTTATTGTTT 60.278 40.000 0.00 0.00 46.70 2.83
3541 7687 5.761165 AACGCCTACTGTGTTATTGTTTT 57.239 34.783 0.00 0.00 45.60 2.43
3544 7690 8.550710 AACGCCTACTGTGTTATTGTTTTATA 57.449 30.769 0.00 0.00 45.60 0.98
3545 7691 8.726870 ACGCCTACTGTGTTATTGTTTTATAT 57.273 30.769 0.00 0.00 32.53 0.86
3546 7692 9.820725 ACGCCTACTGTGTTATTGTTTTATATA 57.179 29.630 0.00 0.00 32.53 0.86
3594 7740 3.125146 TGCTTTACTGCATCGTCATTGAC 59.875 43.478 6.73 6.73 38.12 3.18
3595 7741 3.372206 GCTTTACTGCATCGTCATTGACT 59.628 43.478 14.54 0.00 0.00 3.41
3598 7744 2.341257 ACTGCATCGTCATTGACTGTC 58.659 47.619 14.54 0.00 0.00 3.51
3606 7752 2.413112 CGTCATTGACTGTCTCGCAAAT 59.587 45.455 14.54 0.00 0.00 2.32
3607 7753 3.482598 CGTCATTGACTGTCTCGCAAATC 60.483 47.826 14.54 0.00 0.00 2.17
3619 7765 3.863424 TCTCGCAAATCGGAATTCAGTAC 59.137 43.478 7.93 0.00 39.05 2.73
3644 7791 8.832521 ACTTGTATCATTTTCAGTTTGTAACGA 58.167 29.630 0.00 0.00 36.23 3.85
3645 7792 9.658475 CTTGTATCATTTTCAGTTTGTAACGAA 57.342 29.630 0.00 0.00 36.23 3.85
3650 7797 9.743057 ATCATTTTCAGTTTGTAACGAAATTCA 57.257 25.926 0.00 0.00 35.51 2.57
3651 7798 9.232082 TCATTTTCAGTTTGTAACGAAATTCAG 57.768 29.630 0.00 0.00 35.51 3.02
3652 7799 9.019764 CATTTTCAGTTTGTAACGAAATTCAGT 57.980 29.630 0.00 0.00 35.51 3.41
3655 7802 9.493206 TTTCAGTTTGTAACGAAATTCAGTAAC 57.507 29.630 0.00 0.00 32.88 2.50
3656 7803 8.428186 TCAGTTTGTAACGAAATTCAGTAACT 57.572 30.769 0.00 0.00 36.23 2.24
3657 7804 8.885722 TCAGTTTGTAACGAAATTCAGTAACTT 58.114 29.630 0.00 0.00 36.23 2.66
3658 7805 9.155053 CAGTTTGTAACGAAATTCAGTAACTTC 57.845 33.333 0.00 0.00 36.23 3.01
3659 7806 8.340443 AGTTTGTAACGAAATTCAGTAACTTCC 58.660 33.333 0.00 0.00 36.23 3.46
3660 7807 6.790285 TGTAACGAAATTCAGTAACTTCCC 57.210 37.500 0.00 0.00 0.00 3.97
3661 7808 6.289834 TGTAACGAAATTCAGTAACTTCCCA 58.710 36.000 0.00 0.00 0.00 4.37
3662 7809 5.941948 AACGAAATTCAGTAACTTCCCAG 57.058 39.130 0.00 0.00 0.00 4.45
3663 7810 3.751698 ACGAAATTCAGTAACTTCCCAGC 59.248 43.478 0.00 0.00 0.00 4.85
3664 7811 3.751175 CGAAATTCAGTAACTTCCCAGCA 59.249 43.478 0.00 0.00 0.00 4.41
3665 7812 4.215399 CGAAATTCAGTAACTTCCCAGCAA 59.785 41.667 0.00 0.00 0.00 3.91
3666 7813 5.278266 CGAAATTCAGTAACTTCCCAGCAAA 60.278 40.000 0.00 0.00 0.00 3.68
3667 7814 6.478512 AAATTCAGTAACTTCCCAGCAAAA 57.521 33.333 0.00 0.00 0.00 2.44
3668 7815 6.478512 AATTCAGTAACTTCCCAGCAAAAA 57.521 33.333 0.00 0.00 0.00 1.94
3695 7842 8.631480 AAAAAGAAACTCGGTAATAGGAACAT 57.369 30.769 0.00 0.00 0.00 2.71
3698 7845 7.845066 AGAAACTCGGTAATAGGAACATTTC 57.155 36.000 0.00 0.00 0.00 2.17
3724 7871 8.116753 CCAGTTTCTAATATTGCTCGTTTACTG 58.883 37.037 0.00 0.00 0.00 2.74
3748 7895 4.273480 CCGGTAATAGTTTTCAGGCATGAG 59.727 45.833 0.00 0.00 36.61 2.90
3762 7909 0.466922 CATGAGGCATCCCCTTCCAC 60.467 60.000 0.00 0.00 46.60 4.02
3782 7929 0.313043 TTGAGAACTCGGTGGTCGAC 59.687 55.000 7.13 7.13 43.74 4.20
3783 7930 0.820482 TGAGAACTCGGTGGTCGACA 60.820 55.000 18.91 0.27 43.74 4.35
3788 7935 0.037605 ACTCGGTGGTCGACAAATCC 60.038 55.000 18.91 11.94 43.74 3.01
3815 7963 4.958509 TCGTACATTAAGTCCACACCAAA 58.041 39.130 0.00 0.00 0.00 3.28
3844 7992 4.207165 ACAAGTGGTCTGCTTACACATTT 58.793 39.130 0.00 0.00 37.58 2.32
3853 8001 4.628333 TCTGCTTACACATTTACCGCTTAC 59.372 41.667 0.00 0.00 0.00 2.34
3913 8061 4.647964 CCGTGGATTCAAATCAAAGTACG 58.352 43.478 5.19 6.82 37.15 3.67
3914 8062 4.153475 CCGTGGATTCAAATCAAAGTACGT 59.847 41.667 5.19 0.00 37.15 3.57
3915 8063 5.349270 CCGTGGATTCAAATCAAAGTACGTA 59.651 40.000 5.19 0.00 37.15 3.57
3918 8066 7.359765 CGTGGATTCAAATCAAAGTACGTACTT 60.360 37.037 30.57 30.57 38.80 2.24
3919 8067 7.744715 GTGGATTCAAATCAAAGTACGTACTTG 59.255 37.037 34.93 27.40 39.73 3.16
3920 8068 7.442969 TGGATTCAAATCAAAGTACGTACTTGT 59.557 33.333 34.93 23.37 39.73 3.16
3923 8071 8.829514 TTCAAATCAAAGTACGTACTTGTTTG 57.170 30.769 34.76 34.76 45.17 2.93
3924 8072 7.976826 TCAAATCAAAGTACGTACTTGTTTGT 58.023 30.769 36.12 25.32 45.17 2.83
3966 8134 2.600790 TCTCCGGAGTTTGTGGACTAA 58.399 47.619 30.17 4.05 0.00 2.24
3967 8135 2.298163 TCTCCGGAGTTTGTGGACTAAC 59.702 50.000 30.17 0.00 32.98 2.34
3969 8137 2.140717 CCGGAGTTTGTGGACTAACAC 58.859 52.381 0.00 1.09 41.68 3.32
3986 8177 1.134640 ACACAAGTACACGAGTTGGCA 60.135 47.619 0.00 0.00 42.06 4.92
4010 8209 4.323792 CCTGAGGACCTGAGCTATCAAAAA 60.324 45.833 0.00 0.00 34.23 1.94
4040 8241 4.556942 AATGCAATCACATCACATACCG 57.443 40.909 0.00 0.00 0.00 4.02
4044 8245 3.373748 GCAATCACATCACATACCGAACA 59.626 43.478 0.00 0.00 0.00 3.18
4058 8259 3.000080 GAACACTCGGCGCTGTTCG 62.000 63.158 24.61 10.48 37.58 3.95
4068 8269 0.110823 GCGCTGTTCGTCGATTTGTT 60.111 50.000 0.00 0.00 41.07 2.83
4127 8328 2.391389 GCCTCGAAAACGGAGCTGG 61.391 63.158 0.00 0.00 0.00 4.85
4128 8329 1.292223 CCTCGAAAACGGAGCTGGA 59.708 57.895 0.00 0.00 0.00 3.86
4129 8330 1.014564 CCTCGAAAACGGAGCTGGAC 61.015 60.000 0.00 0.00 0.00 4.02
4130 8331 0.319555 CTCGAAAACGGAGCTGGACA 60.320 55.000 0.00 0.00 0.00 4.02
4131 8332 0.105224 TCGAAAACGGAGCTGGACAA 59.895 50.000 0.00 0.00 0.00 3.18
4132 8333 0.512952 CGAAAACGGAGCTGGACAAG 59.487 55.000 0.00 0.00 0.00 3.16
4133 8334 1.872237 CGAAAACGGAGCTGGACAAGA 60.872 52.381 0.00 0.00 0.00 3.02
4159 8362 4.536526 TGGGGGCAGCACAGCAAA 62.537 61.111 0.00 0.00 35.83 3.68
4184 8401 4.082523 CCGACTGATGGCCGTGGT 62.083 66.667 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.450476 AGGGTCATGAAGATGGCAAAC 58.550 47.619 0.00 0.00 35.73 2.93
3 4 3.889815 CTTAGGGTCATGAAGATGGCAA 58.110 45.455 0.00 0.00 35.73 4.52
4 5 2.421952 GCTTAGGGTCATGAAGATGGCA 60.422 50.000 0.00 0.00 35.73 4.92
5 6 2.225467 GCTTAGGGTCATGAAGATGGC 58.775 52.381 0.00 0.00 32.98 4.40
6 7 2.103094 TCGCTTAGGGTCATGAAGATGG 59.897 50.000 0.00 0.00 0.00 3.51
7 8 3.459232 TCGCTTAGGGTCATGAAGATG 57.541 47.619 0.00 0.00 0.00 2.90
8 9 4.487714 TTTCGCTTAGGGTCATGAAGAT 57.512 40.909 0.00 0.00 0.00 2.40
9 10 3.973206 TTTCGCTTAGGGTCATGAAGA 57.027 42.857 0.00 0.00 0.00 2.87
10 11 4.215399 TGTTTTTCGCTTAGGGTCATGAAG 59.785 41.667 0.00 0.00 0.00 3.02
11 12 4.138290 TGTTTTTCGCTTAGGGTCATGAA 58.862 39.130 0.00 0.00 0.00 2.57
12 13 3.745799 TGTTTTTCGCTTAGGGTCATGA 58.254 40.909 0.00 0.00 0.00 3.07
13 14 4.701956 ATGTTTTTCGCTTAGGGTCATG 57.298 40.909 0.00 0.00 0.00 3.07
50 51 3.215151 TGCTCCCGTCAAATTGTTGTAA 58.785 40.909 0.00 0.00 36.07 2.41
51 52 2.852449 TGCTCCCGTCAAATTGTTGTA 58.148 42.857 0.00 0.00 36.07 2.41
65 66 1.473434 CGGTAGTCTGGAATTGCTCCC 60.473 57.143 0.00 0.00 44.69 4.30
85 86 3.018149 AGGACTCTGAGTGACCGTATTC 58.982 50.000 16.28 0.00 0.00 1.75
90 91 1.822506 TACAGGACTCTGAGTGACCG 58.177 55.000 16.28 9.74 43.49 4.79
91 92 3.158676 ACTTACAGGACTCTGAGTGACC 58.841 50.000 16.28 11.14 43.49 4.02
100 101 2.164624 AGCACATCGACTTACAGGACTC 59.835 50.000 0.00 0.00 0.00 3.36
104 105 2.654749 TCAGCACATCGACTTACAGG 57.345 50.000 0.00 0.00 0.00 4.00
114 115 7.706159 TCAACCAAATATGTAATCAGCACATC 58.294 34.615 0.00 0.00 37.74 3.06
115 116 7.643569 TCAACCAAATATGTAATCAGCACAT 57.356 32.000 0.00 0.00 39.82 3.21
117 118 7.706159 TCATCAACCAAATATGTAATCAGCAC 58.294 34.615 0.00 0.00 0.00 4.40
168 170 8.795786 TTTGACAAGTTGCTGTGAAATAATAC 57.204 30.769 1.81 0.00 29.09 1.89
170 172 9.979578 TTATTTGACAAGTTGCTGTGAAATAAT 57.020 25.926 13.40 0.00 43.85 1.28
177 179 4.930963 TGGTTATTTGACAAGTTGCTGTG 58.069 39.130 1.81 0.00 0.00 3.66
183 185 4.798882 TGGTCCTGGTTATTTGACAAGTT 58.201 39.130 0.00 0.00 0.00 2.66
185 187 5.105756 GGATTGGTCCTGGTTATTTGACAAG 60.106 44.000 0.00 0.00 41.60 3.16
192 194 3.669939 CAGGGATTGGTCCTGGTTATT 57.330 47.619 2.40 0.00 45.95 1.40
212 221 6.018751 GCCTGAAAACCTTGAAGAACAAAATC 60.019 38.462 0.00 0.00 38.08 2.17
216 225 3.132111 GGCCTGAAAACCTTGAAGAACAA 59.868 43.478 0.00 0.00 36.97 2.83
218 227 2.287608 CGGCCTGAAAACCTTGAAGAAC 60.288 50.000 0.00 0.00 0.00 3.01
227 236 2.626780 GCAGACCGGCCTGAAAACC 61.627 63.158 23.28 0.00 36.29 3.27
229 238 1.150536 AAGCAGACCGGCCTGAAAA 59.849 52.632 23.28 0.00 36.29 2.29
231 240 2.032528 CAAGCAGACCGGCCTGAA 59.967 61.111 23.28 0.00 36.29 3.02
292 303 9.221933 TGTAGTACGGAATTTTGTAACATTCAT 57.778 29.630 6.01 0.00 31.91 2.57
325 336 9.793259 TGGTTGTTTACTCTGATCTATTTTTCT 57.207 29.630 0.00 0.00 0.00 2.52
326 337 9.827411 GTGGTTGTTTACTCTGATCTATTTTTC 57.173 33.333 0.00 0.00 0.00 2.29
339 350 6.930667 TCTTTTAGGTGTGGTTGTTTACTC 57.069 37.500 0.00 0.00 0.00 2.59
341 352 9.673454 CTATTTCTTTTAGGTGTGGTTGTTTAC 57.327 33.333 0.00 0.00 0.00 2.01
350 361 6.817765 TTGAGCCTATTTCTTTTAGGTGTG 57.182 37.500 0.00 0.00 38.80 3.82
355 366 7.281100 ACTTCCGATTGAGCCTATTTCTTTTAG 59.719 37.037 0.00 0.00 0.00 1.85
356 367 7.110155 ACTTCCGATTGAGCCTATTTCTTTTA 58.890 34.615 0.00 0.00 0.00 1.52
365 376 6.322969 TGATAACTAACTTCCGATTGAGCCTA 59.677 38.462 0.00 0.00 0.00 3.93
369 380 7.041780 CCCAATGATAACTAACTTCCGATTGAG 60.042 40.741 0.00 0.00 0.00 3.02
371 382 6.765989 TCCCAATGATAACTAACTTCCGATTG 59.234 38.462 0.00 0.00 0.00 2.67
372 383 6.895782 TCCCAATGATAACTAACTTCCGATT 58.104 36.000 0.00 0.00 0.00 3.34
374 385 5.943349 TCCCAATGATAACTAACTTCCGA 57.057 39.130 0.00 0.00 0.00 4.55
444 455 9.660180 GGCTATGAACCAAATAATTTTTAACCA 57.340 29.630 0.00 0.00 0.00 3.67
445 456 9.660180 TGGCTATGAACCAAATAATTTTTAACC 57.340 29.630 0.00 0.00 33.12 2.85
447 458 9.360093 CGTGGCTATGAACCAAATAATTTTTAA 57.640 29.630 0.00 0.00 39.39 1.52
448 459 7.489757 GCGTGGCTATGAACCAAATAATTTTTA 59.510 33.333 0.00 0.00 39.39 1.52
449 460 6.312672 GCGTGGCTATGAACCAAATAATTTTT 59.687 34.615 0.00 0.00 39.39 1.94
450 461 5.810074 GCGTGGCTATGAACCAAATAATTTT 59.190 36.000 0.00 0.00 39.39 1.82
451 462 5.127031 AGCGTGGCTATGAACCAAATAATTT 59.873 36.000 0.00 0.00 39.39 1.82
452 463 4.644685 AGCGTGGCTATGAACCAAATAATT 59.355 37.500 0.00 0.00 39.39 1.40
453 464 4.207165 AGCGTGGCTATGAACCAAATAAT 58.793 39.130 0.00 0.00 39.39 1.28
454 465 3.616219 AGCGTGGCTATGAACCAAATAA 58.384 40.909 0.00 0.00 39.39 1.40
455 466 3.275617 AGCGTGGCTATGAACCAAATA 57.724 42.857 0.00 0.00 39.39 1.40
456 467 2.128771 AGCGTGGCTATGAACCAAAT 57.871 45.000 0.00 0.00 39.39 2.32
457 468 1.810151 GAAGCGTGGCTATGAACCAAA 59.190 47.619 0.00 0.00 38.25 3.28
458 469 1.271108 TGAAGCGTGGCTATGAACCAA 60.271 47.619 0.00 0.00 38.25 3.67
459 470 0.323302 TGAAGCGTGGCTATGAACCA 59.677 50.000 0.00 0.00 38.25 3.67
460 471 0.727398 GTGAAGCGTGGCTATGAACC 59.273 55.000 0.00 0.00 38.25 3.62
461 472 0.727398 GGTGAAGCGTGGCTATGAAC 59.273 55.000 0.00 0.00 38.25 3.18
462 473 0.323302 TGGTGAAGCGTGGCTATGAA 59.677 50.000 0.00 0.00 38.25 2.57
463 474 0.323302 TTGGTGAAGCGTGGCTATGA 59.677 50.000 0.00 0.00 38.25 2.15
464 475 1.135689 GTTTGGTGAAGCGTGGCTATG 60.136 52.381 0.00 0.00 38.25 2.23
465 476 1.165270 GTTTGGTGAAGCGTGGCTAT 58.835 50.000 0.00 0.00 38.25 2.97
466 477 0.107831 AGTTTGGTGAAGCGTGGCTA 59.892 50.000 0.00 0.00 38.25 3.93
467 478 0.107831 TAGTTTGGTGAAGCGTGGCT 59.892 50.000 0.00 0.00 42.56 4.75
473 484 6.092807 CCTGAGTAATTCTAGTTTGGTGAAGC 59.907 42.308 0.00 0.00 0.00 3.86
485 496 7.310485 GGAGAAAGTGAACCCTGAGTAATTCTA 60.310 40.741 0.00 0.00 0.00 2.10
489 500 4.322801 CGGAGAAAGTGAACCCTGAGTAAT 60.323 45.833 0.00 0.00 0.00 1.89
494 505 0.034896 GCGGAGAAAGTGAACCCTGA 59.965 55.000 0.00 0.00 0.00 3.86
497 508 0.534203 TGTGCGGAGAAAGTGAACCC 60.534 55.000 0.00 0.00 0.00 4.11
499 510 1.583054 AGTGTGCGGAGAAAGTGAAC 58.417 50.000 0.00 0.00 0.00 3.18
502 513 3.120199 CCAAATAGTGTGCGGAGAAAGTG 60.120 47.826 0.00 0.00 0.00 3.16
510 521 3.740044 CACTAACCAAATAGTGTGCGG 57.260 47.619 6.35 0.00 44.97 5.69
518 529 7.439955 CGCCACAAGTATATCACTAACCAAATA 59.560 37.037 0.00 0.00 36.04 1.40
519 530 6.260050 CGCCACAAGTATATCACTAACCAAAT 59.740 38.462 0.00 0.00 36.04 2.32
527 538 1.852942 CGCGCCACAAGTATATCACT 58.147 50.000 0.00 0.00 40.05 3.41
531 542 1.145156 TGGCGCGCCACAAGTATAT 59.855 52.632 46.88 0.00 41.89 0.86
550 562 1.030457 GGGCTAGCGCTAAGACAGTA 58.970 55.000 23.47 0.00 36.09 2.74
554 566 1.227292 GTGGGGCTAGCGCTAAGAC 60.227 63.158 28.37 14.18 36.09 3.01
556 568 0.811616 CAAGTGGGGCTAGCGCTAAG 60.812 60.000 28.37 13.30 36.09 2.18
557 569 1.220749 CAAGTGGGGCTAGCGCTAA 59.779 57.895 28.37 16.07 36.09 3.09
560 572 2.820037 GACAAGTGGGGCTAGCGC 60.820 66.667 22.78 22.78 0.00 5.92
564 576 4.018870 TCATGTTTATGACAAGTGGGGCTA 60.019 41.667 0.00 0.00 42.62 3.93
568 669 4.012374 AGCTCATGTTTATGACAAGTGGG 58.988 43.478 0.00 0.00 42.62 4.61
578 679 9.466497 TCAAATTTCCTAAGAGCTCATGTTTAT 57.534 29.630 17.77 0.00 0.00 1.40
581 682 7.951347 ATCAAATTTCCTAAGAGCTCATGTT 57.049 32.000 17.77 4.06 0.00 2.71
583 684 9.947669 CTTAATCAAATTTCCTAAGAGCTCATG 57.052 33.333 17.77 5.08 0.00 3.07
584 685 9.692325 ACTTAATCAAATTTCCTAAGAGCTCAT 57.308 29.630 17.77 6.59 0.00 2.90
588 689 9.346725 CACAACTTAATCAAATTTCCTAAGAGC 57.653 33.333 13.55 0.00 0.00 4.09
590 691 9.362151 ACCACAACTTAATCAAATTTCCTAAGA 57.638 29.630 13.55 0.00 0.00 2.10
591 692 9.410556 CACCACAACTTAATCAAATTTCCTAAG 57.589 33.333 8.11 8.11 0.00 2.18
595 696 5.408299 GCCACCACAACTTAATCAAATTTCC 59.592 40.000 0.00 0.00 0.00 3.13
596 697 5.408299 GGCCACCACAACTTAATCAAATTTC 59.592 40.000 0.00 0.00 0.00 2.17
605 706 3.181461 CCAAATTGGCCACCACAACTTAA 60.181 43.478 3.88 0.00 30.78 1.85
606 707 2.366916 CCAAATTGGCCACCACAACTTA 59.633 45.455 3.88 0.00 30.78 2.24
615 716 2.347114 GGCACCCAAATTGGCCAC 59.653 61.111 3.88 0.00 45.70 5.01
625 726 0.179020 CACTCTTCTTGTGGCACCCA 60.179 55.000 16.26 0.25 0.00 4.51
626 727 0.179018 ACACTCTTCTTGTGGCACCC 60.179 55.000 16.26 0.00 39.52 4.61
651 752 0.457166 CAATGCCATGCGGAAGTGTG 60.457 55.000 0.00 0.00 30.61 3.82
682 783 1.597797 CCGTGCAATTGAGGGCATGT 61.598 55.000 10.34 0.00 43.72 3.21
693 794 4.060900 CTGATAGATGTTAGCCGTGCAAT 58.939 43.478 0.00 0.00 0.00 3.56
696 797 3.371102 TCTGATAGATGTTAGCCGTGC 57.629 47.619 0.00 0.00 0.00 5.34
699 800 8.759641 GCATTTATATCTGATAGATGTTAGCCG 58.240 37.037 3.48 0.00 35.37 5.52
723 827 6.013379 TCAAAACCCCATAGATAACAAAGCA 58.987 36.000 0.00 0.00 0.00 3.91
729 833 7.110155 TCTCTTGTCAAAACCCCATAGATAAC 58.890 38.462 0.00 0.00 0.00 1.89
732 836 5.339530 CCTCTCTTGTCAAAACCCCATAGAT 60.340 44.000 0.00 0.00 0.00 1.98
741 845 5.989777 TGCTTACTACCTCTCTTGTCAAAAC 59.010 40.000 0.00 0.00 0.00 2.43
742 846 5.989777 GTGCTTACTACCTCTCTTGTCAAAA 59.010 40.000 0.00 0.00 0.00 2.44
745 849 4.408276 AGTGCTTACTACCTCTCTTGTCA 58.592 43.478 0.00 0.00 0.00 3.58
746 850 5.394224 AAGTGCTTACTACCTCTCTTGTC 57.606 43.478 0.00 0.00 0.00 3.18
748 852 6.926313 ACTAAAGTGCTTACTACCTCTCTTG 58.074 40.000 0.00 0.00 0.00 3.02
750 854 7.889600 AGTTACTAAAGTGCTTACTACCTCTCT 59.110 37.037 0.00 0.00 0.00 3.10
764 869 8.503196 TGTAAATCATGTGCAGTTACTAAAGTG 58.497 33.333 0.00 0.00 38.80 3.16
767 872 9.672086 GTTTGTAAATCATGTGCAGTTACTAAA 57.328 29.630 0.00 0.00 0.00 1.85
797 902 9.167311 CTTCTATGCACTTTAAAGGAACACTAT 57.833 33.333 19.14 6.43 0.00 2.12
798 903 8.372459 TCTTCTATGCACTTTAAAGGAACACTA 58.628 33.333 19.14 7.74 0.00 2.74
802 907 7.907214 TCTCTTCTATGCACTTTAAAGGAAC 57.093 36.000 19.14 8.50 0.00 3.62
843 951 8.560355 TTGCTAAACATCTATGCAGTCTAAAA 57.440 30.769 0.00 0.00 35.02 1.52
846 954 7.102993 TGTTTGCTAAACATCTATGCAGTCTA 58.897 34.615 9.46 0.00 45.79 2.59
868 976 8.814038 AATTATGATTAGAAGTTGAGCCTGTT 57.186 30.769 0.00 0.00 0.00 3.16
869 977 8.814038 AAATTATGATTAGAAGTTGAGCCTGT 57.186 30.769 0.00 0.00 0.00 4.00
902 1010 4.825422 TCAGAAGATCTTGGCTACAACAG 58.175 43.478 14.00 0.00 32.14 3.16
903 1011 4.890158 TCAGAAGATCTTGGCTACAACA 57.110 40.909 14.00 0.00 32.14 3.33
904 1012 6.560253 TTTTCAGAAGATCTTGGCTACAAC 57.440 37.500 14.00 0.00 32.14 3.32
905 1013 6.349611 GCATTTTCAGAAGATCTTGGCTACAA 60.350 38.462 14.00 0.00 34.87 2.41
906 1014 5.124457 GCATTTTCAGAAGATCTTGGCTACA 59.876 40.000 14.00 0.00 0.00 2.74
907 1015 5.124457 TGCATTTTCAGAAGATCTTGGCTAC 59.876 40.000 14.00 0.00 0.00 3.58
908 1016 5.255687 TGCATTTTCAGAAGATCTTGGCTA 58.744 37.500 14.00 0.00 0.00 3.93
909 1017 4.084287 TGCATTTTCAGAAGATCTTGGCT 58.916 39.130 14.00 1.27 0.00 4.75
910 1018 4.421948 CTGCATTTTCAGAAGATCTTGGC 58.578 43.478 14.00 0.00 36.19 4.52
911 1019 4.677250 GCCTGCATTTTCAGAAGATCTTGG 60.677 45.833 14.00 5.01 36.19 3.61
912 1020 4.421948 GCCTGCATTTTCAGAAGATCTTG 58.578 43.478 14.00 0.00 36.19 3.02
913 1021 3.446516 GGCCTGCATTTTCAGAAGATCTT 59.553 43.478 7.95 7.95 36.19 2.40
914 1022 3.022406 GGCCTGCATTTTCAGAAGATCT 58.978 45.455 0.00 0.00 36.19 2.75
915 1023 3.022406 AGGCCTGCATTTTCAGAAGATC 58.978 45.455 3.11 0.00 36.19 2.75
916 1024 3.022406 GAGGCCTGCATTTTCAGAAGAT 58.978 45.455 12.00 0.00 36.19 2.40
917 1025 2.040813 AGAGGCCTGCATTTTCAGAAGA 59.959 45.455 12.00 0.00 36.19 2.87
918 1026 2.444421 AGAGGCCTGCATTTTCAGAAG 58.556 47.619 12.00 0.00 36.19 2.85
919 1027 2.592102 AGAGGCCTGCATTTTCAGAA 57.408 45.000 12.00 0.00 36.19 3.02
920 1028 2.040813 AGAAGAGGCCTGCATTTTCAGA 59.959 45.455 12.00 0.00 36.19 3.27
921 1029 2.444421 AGAAGAGGCCTGCATTTTCAG 58.556 47.619 12.00 0.00 0.00 3.02
922 1030 2.592102 AGAAGAGGCCTGCATTTTCA 57.408 45.000 12.00 0.00 0.00 2.69
958 1066 9.645059 GCTACAACTGCTCTATCAATTATATGA 57.355 33.333 0.00 0.00 0.00 2.15
959 1067 9.650539 AGCTACAACTGCTCTATCAATTATATG 57.349 33.333 0.00 0.00 35.67 1.78
960 1068 9.650539 CAGCTACAACTGCTCTATCAATTATAT 57.349 33.333 0.00 0.00 38.92 0.86
961 1069 8.860088 TCAGCTACAACTGCTCTATCAATTATA 58.140 33.333 0.00 0.00 38.92 0.98
962 1070 7.730084 TCAGCTACAACTGCTCTATCAATTAT 58.270 34.615 0.00 0.00 38.92 1.28
963 1071 7.112452 TCAGCTACAACTGCTCTATCAATTA 57.888 36.000 0.00 0.00 38.92 1.40
964 1072 5.982356 TCAGCTACAACTGCTCTATCAATT 58.018 37.500 0.00 0.00 38.92 2.32
965 1073 5.604758 TCAGCTACAACTGCTCTATCAAT 57.395 39.130 0.00 0.00 38.92 2.57
966 1074 5.604758 ATCAGCTACAACTGCTCTATCAA 57.395 39.130 0.00 0.00 38.92 2.57
967 1075 5.604758 AATCAGCTACAACTGCTCTATCA 57.395 39.130 0.00 0.00 38.92 2.15
968 1076 6.917217 AAAATCAGCTACAACTGCTCTATC 57.083 37.500 0.00 0.00 38.92 2.08
969 1077 8.970859 ATAAAAATCAGCTACAACTGCTCTAT 57.029 30.769 0.00 0.00 38.92 1.98
970 1078 8.792830 AATAAAAATCAGCTACAACTGCTCTA 57.207 30.769 0.00 0.00 38.92 2.43
971 1079 7.693969 AATAAAAATCAGCTACAACTGCTCT 57.306 32.000 0.00 0.00 38.92 4.09
972 1080 8.748380 AAAATAAAAATCAGCTACAACTGCTC 57.252 30.769 0.00 0.00 38.92 4.26
993 1101 8.342634 GTGAGGCGATTACACAACATATAAAAT 58.657 33.333 0.00 0.00 35.06 1.82
1012 1138 1.936547 GCCTTCTAATCTTGTGAGGCG 59.063 52.381 0.00 0.00 0.00 5.52
1014 1140 4.578105 GGATTGCCTTCTAATCTTGTGAGG 59.422 45.833 0.00 0.00 35.42 3.86
1015 1141 4.578105 GGGATTGCCTTCTAATCTTGTGAG 59.422 45.833 0.00 0.00 35.42 3.51
1020 1146 5.713861 GCATATGGGATTGCCTTCTAATCTT 59.286 40.000 4.56 0.00 35.42 2.40
1101 1233 1.623811 ACAGGAACTATCACTGCGGTT 59.376 47.619 0.00 0.00 36.02 4.44
1103 1235 1.645034 CACAGGAACTATCACTGCGG 58.355 55.000 0.00 0.00 36.02 5.69
1205 1339 3.159213 ACCACCTTGCATGATGAAAGA 57.841 42.857 14.77 0.00 34.90 2.52
1211 1345 4.151883 AGTTGTTTACCACCTTGCATGAT 58.848 39.130 0.00 0.00 0.00 2.45
1212 1346 3.561143 AGTTGTTTACCACCTTGCATGA 58.439 40.909 0.00 0.00 0.00 3.07
1213 1347 4.759693 TCTAGTTGTTTACCACCTTGCATG 59.240 41.667 0.00 0.00 0.00 4.06
1214 1348 4.760204 GTCTAGTTGTTTACCACCTTGCAT 59.240 41.667 0.00 0.00 0.00 3.96
1215 1349 4.131596 GTCTAGTTGTTTACCACCTTGCA 58.868 43.478 0.00 0.00 0.00 4.08
1217 1351 6.877611 AATGTCTAGTTGTTTACCACCTTG 57.122 37.500 0.00 0.00 0.00 3.61
1218 1352 9.886132 CTATAATGTCTAGTTGTTTACCACCTT 57.114 33.333 0.00 0.00 0.00 3.50
1219 1353 9.263446 TCTATAATGTCTAGTTGTTTACCACCT 57.737 33.333 0.00 0.00 0.00 4.00
1225 1359 8.978472 ACCTGCTCTATAATGTCTAGTTGTTTA 58.022 33.333 0.00 0.00 0.00 2.01
1226 1360 7.852263 ACCTGCTCTATAATGTCTAGTTGTTT 58.148 34.615 0.00 0.00 0.00 2.83
1227 1361 7.425224 ACCTGCTCTATAATGTCTAGTTGTT 57.575 36.000 0.00 0.00 0.00 2.83
1228 1362 7.343316 AGAACCTGCTCTATAATGTCTAGTTGT 59.657 37.037 0.00 0.00 0.00 3.32
1229 1363 7.721402 AGAACCTGCTCTATAATGTCTAGTTG 58.279 38.462 0.00 0.00 0.00 3.16
1230 1364 7.906199 AGAACCTGCTCTATAATGTCTAGTT 57.094 36.000 0.00 0.00 0.00 2.24
1250 1384 7.754851 TTTCCATGGAAGTTTAGGTAAGAAC 57.245 36.000 25.69 0.00 35.38 3.01
1254 1388 7.899648 TTGTTTTCCATGGAAGTTTAGGTAA 57.100 32.000 25.69 12.83 35.38 2.85
1271 1405 5.220284 GCTGCAGAGTCAAAGTTTTGTTTTC 60.220 40.000 20.43 0.00 39.18 2.29
1295 1431 2.432146 TCCTCATGGTCTCCTGATTTCG 59.568 50.000 0.00 0.00 34.23 3.46
1299 1435 4.019501 GCATAATCCTCATGGTCTCCTGAT 60.020 45.833 0.00 0.00 34.23 2.90
1389 1525 8.408043 TGATTGATTGGAAGTCACTTGTTATT 57.592 30.769 0.00 0.00 0.00 1.40
1437 1573 7.148018 CCATTTTCTAGTGTGCCATGATAAACT 60.148 37.037 0.00 0.00 0.00 2.66
1455 1591 5.413833 CACAGCTACTTCATCACCATTTTCT 59.586 40.000 0.00 0.00 0.00 2.52
1510 1646 0.687354 TCAGGGAGGAAGTCTGTTGC 59.313 55.000 0.00 0.00 0.00 4.17
1539 1676 8.514594 TCTATCGAAGAAAGCATTGATGTTTTT 58.485 29.630 7.15 2.43 43.58 1.94
1560 1711 6.030228 GCAGCCTTATTGTGTGTTTTCTATC 58.970 40.000 0.00 0.00 0.00 2.08
1568 1823 2.288395 GCTTTGCAGCCTTATTGTGTGT 60.288 45.455 0.00 0.00 40.61 3.72
1569 1824 2.288334 TGCTTTGCAGCCTTATTGTGTG 60.288 45.455 0.00 0.00 46.74 3.82
1571 1826 2.728690 TGCTTTGCAGCCTTATTGTG 57.271 45.000 0.00 0.00 46.74 3.33
1859 2383 5.677091 GCATGTTGGATTGGTTGTAGCTAAG 60.677 44.000 0.00 0.00 0.00 2.18
1860 2384 4.157656 GCATGTTGGATTGGTTGTAGCTAA 59.842 41.667 0.00 0.00 0.00 3.09
1861 2385 3.694072 GCATGTTGGATTGGTTGTAGCTA 59.306 43.478 0.00 0.00 0.00 3.32
1864 2388 3.507233 ACTGCATGTTGGATTGGTTGTAG 59.493 43.478 0.00 0.00 0.00 2.74
1979 2518 5.302568 TGGTCAACTTGCTTTTCAGATTGAT 59.697 36.000 0.00 0.00 34.77 2.57
2022 2561 2.609610 TAGGGGGAAAGGCTGCGT 60.610 61.111 0.00 0.00 0.00 5.24
2023 2562 2.124695 GTAGGGGGAAAGGCTGCG 60.125 66.667 0.00 0.00 0.00 5.18
2025 2564 2.024941 AGAAATGTAGGGGGAAAGGCTG 60.025 50.000 0.00 0.00 0.00 4.85
2027 2566 2.291605 ACAGAAATGTAGGGGGAAAGGC 60.292 50.000 0.00 0.00 0.00 4.35
2028 2567 3.739401 ACAGAAATGTAGGGGGAAAGG 57.261 47.619 0.00 0.00 0.00 3.11
2030 2569 5.045140 CCTCTTACAGAAATGTAGGGGGAAA 60.045 44.000 10.12 0.00 42.58 3.13
2031 2570 4.473559 CCTCTTACAGAAATGTAGGGGGAA 59.526 45.833 10.12 0.00 42.58 3.97
2032 2571 4.037927 CCTCTTACAGAAATGTAGGGGGA 58.962 47.826 10.12 0.00 42.58 4.81
2034 2573 3.456277 AGCCTCTTACAGAAATGTAGGGG 59.544 47.826 0.00 0.00 0.00 4.79
2035 2574 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2037 2576 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2038 2577 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2039 2578 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2040 2579 4.142816 CGGAAACAGCCTCTTACAGAAATG 60.143 45.833 0.00 0.00 0.00 2.32
2041 2580 4.003648 CGGAAACAGCCTCTTACAGAAAT 58.996 43.478 0.00 0.00 0.00 2.17
2042 2581 3.399330 CGGAAACAGCCTCTTACAGAAA 58.601 45.455 0.00 0.00 0.00 2.52
2043 2582 2.289444 CCGGAAACAGCCTCTTACAGAA 60.289 50.000 0.00 0.00 0.00 3.02
2044 2583 1.275291 CCGGAAACAGCCTCTTACAGA 59.725 52.381 0.00 0.00 0.00 3.41
2045 2584 1.676014 CCCGGAAACAGCCTCTTACAG 60.676 57.143 0.73 0.00 0.00 2.74
2046 2585 0.323629 CCCGGAAACAGCCTCTTACA 59.676 55.000 0.73 0.00 0.00 2.41
2047 2586 0.611714 TCCCGGAAACAGCCTCTTAC 59.388 55.000 0.73 0.00 0.00 2.34
2048 2587 0.611714 GTCCCGGAAACAGCCTCTTA 59.388 55.000 0.73 0.00 0.00 2.10
2049 2588 1.128188 AGTCCCGGAAACAGCCTCTT 61.128 55.000 0.73 0.00 0.00 2.85
2053 2592 0.536460 TTCAAGTCCCGGAAACAGCC 60.536 55.000 0.73 0.00 0.00 4.85
2056 2595 0.179012 GGGTTCAAGTCCCGGAAACA 60.179 55.000 0.73 0.00 35.27 2.83
2057 2596 2.637521 GGGTTCAAGTCCCGGAAAC 58.362 57.895 0.73 0.00 35.27 2.78
2080 2619 1.746615 CCGCCTTGTGACCATGAGG 60.747 63.158 0.00 0.00 42.21 3.86
2081 2620 2.401766 GCCGCCTTGTGACCATGAG 61.402 63.158 0.00 0.00 0.00 2.90
2082 2621 2.359850 GCCGCCTTGTGACCATGA 60.360 61.111 0.00 0.00 0.00 3.07
2084 2623 2.360350 CTGCCGCCTTGTGACCAT 60.360 61.111 0.00 0.00 0.00 3.55
2087 2626 1.234615 TAAAGCTGCCGCCTTGTGAC 61.235 55.000 0.00 0.00 36.60 3.67
2089 2628 1.210155 GTAAAGCTGCCGCCTTGTG 59.790 57.895 0.00 0.00 36.60 3.33
2090 2629 1.971695 GGTAAAGCTGCCGCCTTGT 60.972 57.895 0.00 0.00 36.60 3.16
2091 2630 1.971167 TGGTAAAGCTGCCGCCTTG 60.971 57.895 0.00 0.00 36.60 3.61
2092 2631 1.971695 GTGGTAAAGCTGCCGCCTT 60.972 57.895 0.00 0.00 36.60 4.35
2094 2633 2.359975 AGTGGTAAAGCTGCCGCC 60.360 61.111 10.87 1.95 38.51 6.13
2095 2634 2.870372 CAGTGGTAAAGCTGCCGC 59.130 61.111 0.00 7.47 38.05 6.53
2099 2638 1.514678 TTGCCGCAGTGGTAAAGCTG 61.515 55.000 0.22 0.00 39.62 4.24
2100 2639 1.228124 TTGCCGCAGTGGTAAAGCT 60.228 52.632 0.22 0.00 39.62 3.74
2101 2640 1.210155 CTTGCCGCAGTGGTAAAGC 59.790 57.895 4.95 0.00 42.20 3.51
2103 2642 2.265182 GCCTTGCCGCAGTGGTAAA 61.265 57.895 4.95 0.00 42.20 2.01
2104 2643 2.671619 GCCTTGCCGCAGTGGTAA 60.672 61.111 13.70 3.25 40.37 2.85
2105 2644 3.605749 GAGCCTTGCCGCAGTGGTA 62.606 63.158 13.70 0.00 41.21 3.25
2115 2654 1.984288 ATAACGGAGGGGAGCCTTGC 61.984 60.000 0.00 0.00 0.00 4.01
2119 2658 0.765510 ATTGATAACGGAGGGGAGCC 59.234 55.000 0.00 0.00 0.00 4.70
2120 2659 3.983044 ATATTGATAACGGAGGGGAGC 57.017 47.619 0.00 0.00 0.00 4.70
2122 2661 6.707290 CACAATATATTGATAACGGAGGGGA 58.293 40.000 28.13 0.00 40.14 4.81
2124 2663 5.937540 TGCACAATATATTGATAACGGAGGG 59.062 40.000 28.13 2.42 40.14 4.30
2125 2664 6.128282 GGTGCACAATATATTGATAACGGAGG 60.128 42.308 28.13 9.35 40.14 4.30
2128 2667 5.471797 TGGGTGCACAATATATTGATAACGG 59.528 40.000 28.13 12.66 40.14 4.44
2129 2668 6.017523 TGTGGGTGCACAATATATTGATAACG 60.018 38.462 28.13 13.34 40.14 3.18
2130 2669 7.270757 TGTGGGTGCACAATATATTGATAAC 57.729 36.000 28.13 20.46 40.14 1.89
2149 5304 8.341903 GTTCCTGTCAAATTTTATTTTTGTGGG 58.658 33.333 0.00 0.00 35.90 4.61
2211 5371 8.141909 GCCAGAATAGTTTGGTTTTAGAGTTTT 58.858 33.333 1.40 0.00 36.81 2.43
2238 5398 5.917462 TCCTGATTACACTACCATGTCATG 58.083 41.667 5.79 5.79 33.85 3.07
2239 5399 6.753913 ATCCTGATTACACTACCATGTCAT 57.246 37.500 0.00 0.00 33.85 3.06
2250 5410 6.148811 TCCAGTTTCGAAAATCCTGATTACAC 59.851 38.462 21.96 4.54 0.00 2.90
2253 5413 7.338710 AGATCCAGTTTCGAAAATCCTGATTA 58.661 34.615 21.96 11.40 0.00 1.75
2315 5479 2.806818 CCATATTGACTAGCAGCAGCAG 59.193 50.000 3.17 1.45 45.49 4.24
2335 5499 5.646793 GGGAATTAAGTCTACCAACTCAACC 59.353 44.000 2.56 0.00 0.00 3.77
2351 5515 5.477291 CGAGTATCTAGGCAGAGGGAATTAA 59.523 44.000 0.00 0.00 33.22 1.40
2357 5521 2.156098 GTCGAGTATCTAGGCAGAGGG 58.844 57.143 0.00 0.00 33.22 4.30
2358 5522 3.134574 AGTCGAGTATCTAGGCAGAGG 57.865 52.381 0.00 0.00 33.22 3.69
2364 5528 7.520292 GCCTTACTTGTTAGTCGAGTATCTAGG 60.520 44.444 18.05 11.68 41.18 3.02
2365 5529 7.012138 TGCCTTACTTGTTAGTCGAGTATCTAG 59.988 40.741 14.42 14.42 41.18 2.43
2386 5553 1.753073 GGATGCAGCTATGTTTGCCTT 59.247 47.619 0.22 0.00 39.54 4.35
2393 5560 2.299582 CAGCTCTAGGATGCAGCTATGT 59.700 50.000 0.22 0.00 41.73 2.29
2462 5631 5.669164 TTAACCATGGTAGCCCAAATTTC 57.331 39.130 20.12 0.00 46.04 2.17
2478 5647 8.087750 CCATGCTTTTGACTAAGAATTTAACCA 58.912 33.333 0.00 0.00 0.00 3.67
2545 5723 8.639761 TCTCTAGTTGCTTTGTTTCTTACTAGT 58.360 33.333 0.00 0.00 36.57 2.57
2547 5725 8.857098 TCTCTCTAGTTGCTTTGTTTCTTACTA 58.143 33.333 0.00 0.00 0.00 1.82
2648 5838 8.584157 TGCCAAATTAGTAAGTGTCATTTGAAT 58.416 29.630 4.81 0.00 37.11 2.57
2649 5839 7.946207 TGCCAAATTAGTAAGTGTCATTTGAA 58.054 30.769 4.81 0.00 37.11 2.69
2681 6762 7.876936 TCAAACTATAGTCGTCTCCTGTATT 57.123 36.000 5.70 0.00 0.00 1.89
2684 6766 6.777213 ATTCAAACTATAGTCGTCTCCTGT 57.223 37.500 5.70 0.00 0.00 4.00
2692 6774 6.978343 TGTTCCCAATTCAAACTATAGTCG 57.022 37.500 5.70 0.79 0.00 4.18
2734 6816 1.369091 CCGTACCTTGTGCAGCATCC 61.369 60.000 0.00 0.00 0.00 3.51
2750 6832 2.479566 AACATGCAACTGAGATCCGT 57.520 45.000 0.00 0.00 0.00 4.69
2753 6835 2.490903 AGGCAAACATGCAACTGAGATC 59.509 45.455 2.97 0.00 36.33 2.75
2756 6838 2.806608 AAGGCAAACATGCAACTGAG 57.193 45.000 2.97 0.00 36.33 3.35
2784 6866 9.520204 AAGAAAGAAAACACACACATTCATAAG 57.480 29.630 0.00 0.00 0.00 1.73
2790 6879 7.331687 CCTCAAAAGAAAGAAAACACACACATT 59.668 33.333 0.00 0.00 0.00 2.71
2827 6920 7.826690 ACAAAACTCTTACTTTGAACACACAT 58.173 30.769 1.80 0.00 36.30 3.21
2843 6938 3.378427 GTCCTGCAGTTCAACAAAACTCT 59.622 43.478 13.81 0.00 37.38 3.24
2854 6950 2.763448 AGATACTCCAGTCCTGCAGTTC 59.237 50.000 13.81 5.11 0.00 3.01
2948 7044 5.400189 CCCAAAATCAGATATTACCCCCACT 60.400 44.000 0.00 0.00 0.00 4.00
3068 7170 1.269309 ACGTCTGTCTTGACTGTGAGC 60.269 52.381 2.35 0.00 35.00 4.26
3074 7176 3.068307 AGCTGTAAACGTCTGTCTTGACT 59.932 43.478 0.00 0.00 35.00 3.41
3118 7220 4.360405 GGGGTTGGCCGGTGATGT 62.360 66.667 1.90 0.00 34.97 3.06
3199 7301 2.058798 CTACAACGTCGTGAATGCTGT 58.941 47.619 0.00 0.54 0.00 4.40
3212 7314 3.059597 CCAGCAGTTTCTTGTCTACAACG 60.060 47.826 0.00 0.00 0.00 4.10
3292 7394 1.442526 CCTGTCGATGGCTGCATTCC 61.443 60.000 0.50 0.00 0.00 3.01
3293 7395 2.020131 CCTGTCGATGGCTGCATTC 58.980 57.895 0.50 0.00 0.00 2.67
3334 7436 2.288213 GGCAACCACACTTTAAGCCTTC 60.288 50.000 0.00 0.00 37.67 3.46
3341 7443 1.169661 CCGCTGGCAACCACACTTTA 61.170 55.000 0.00 0.00 0.00 1.85
3438 7570 0.531200 AAAGAGCTCCCCTCGTTACG 59.469 55.000 10.93 0.00 45.54 3.18
3509 7653 2.158726 ACAGTAGGCGTTTCCCTTTCAA 60.159 45.455 0.00 0.00 36.41 2.69
3577 7723 3.193479 AGACAGTCAATGACGATGCAGTA 59.807 43.478 7.83 0.00 37.67 2.74
3594 7740 2.672874 TGAATTCCGATTTGCGAGACAG 59.327 45.455 2.27 0.00 44.57 3.51
3595 7741 2.672874 CTGAATTCCGATTTGCGAGACA 59.327 45.455 2.27 0.00 44.57 3.41
3598 7744 3.865745 AGTACTGAATTCCGATTTGCGAG 59.134 43.478 2.27 0.00 44.57 5.03
3606 7752 8.786826 AAAATGATACAAGTACTGAATTCCGA 57.213 30.769 2.27 0.00 0.00 4.55
3607 7753 8.664798 TGAAAATGATACAAGTACTGAATTCCG 58.335 33.333 2.27 0.00 0.00 4.30
3619 7765 9.658475 TTCGTTACAAACTGAAAATGATACAAG 57.342 29.630 0.00 0.00 0.00 3.16
3642 7789 3.751175 TGCTGGGAAGTTACTGAATTTCG 59.249 43.478 0.00 0.00 33.28 3.46
3643 7790 5.705609 TTGCTGGGAAGTTACTGAATTTC 57.294 39.130 0.00 0.00 32.07 2.17
3644 7791 6.478512 TTTTGCTGGGAAGTTACTGAATTT 57.521 33.333 0.00 0.00 0.00 1.82
3645 7792 6.478512 TTTTTGCTGGGAAGTTACTGAATT 57.521 33.333 0.00 0.00 0.00 2.17
3670 7817 8.631480 ATGTTCCTATTACCGAGTTTCTTTTT 57.369 30.769 0.00 0.00 0.00 1.94
3671 7818 8.631480 AATGTTCCTATTACCGAGTTTCTTTT 57.369 30.769 0.00 0.00 0.00 2.27
3672 7819 8.631480 AAATGTTCCTATTACCGAGTTTCTTT 57.369 30.769 0.00 0.00 0.00 2.52
3673 7820 7.336176 GGAAATGTTCCTATTACCGAGTTTCTT 59.664 37.037 0.00 0.00 46.57 2.52
3674 7821 6.822170 GGAAATGTTCCTATTACCGAGTTTCT 59.178 38.462 0.00 0.00 46.57 2.52
3675 7822 7.012959 GGAAATGTTCCTATTACCGAGTTTC 57.987 40.000 0.00 0.00 46.57 2.78
3676 7823 6.997239 GGAAATGTTCCTATTACCGAGTTT 57.003 37.500 0.00 0.00 46.57 2.66
3690 7837 9.508567 GAGCAATATTAGAAACTGGAAATGTTC 57.491 33.333 0.00 0.00 0.00 3.18
3691 7838 8.184192 CGAGCAATATTAGAAACTGGAAATGTT 58.816 33.333 0.00 0.00 0.00 2.71
3692 7839 7.336931 ACGAGCAATATTAGAAACTGGAAATGT 59.663 33.333 0.00 0.00 0.00 2.71
3693 7840 7.697691 ACGAGCAATATTAGAAACTGGAAATG 58.302 34.615 0.00 0.00 0.00 2.32
3694 7841 7.865706 ACGAGCAATATTAGAAACTGGAAAT 57.134 32.000 0.00 0.00 0.00 2.17
3695 7842 7.681939 AACGAGCAATATTAGAAACTGGAAA 57.318 32.000 0.00 0.00 0.00 3.13
3698 7845 8.116753 CAGTAAACGAGCAATATTAGAAACTGG 58.883 37.037 0.00 0.00 0.00 4.00
3724 7871 2.361789 TGCCTGAAAACTATTACCGGC 58.638 47.619 0.00 0.00 36.85 6.13
3748 7895 0.394899 CTCAAGTGGAAGGGGATGCC 60.395 60.000 0.00 0.00 0.00 4.40
3762 7909 0.596577 TCGACCACCGAGTTCTCAAG 59.403 55.000 0.79 0.00 43.23 3.02
3782 7929 4.328983 ACTTAATGTACGAGCACGGATTTG 59.671 41.667 8.74 3.39 44.46 2.32
3783 7930 4.501071 ACTTAATGTACGAGCACGGATTT 58.499 39.130 8.74 0.45 44.46 2.17
3788 7935 2.597305 GTGGACTTAATGTACGAGCACG 59.403 50.000 0.76 0.76 45.75 5.34
3815 7963 0.977395 GCAGACCACTTGTCCTAGGT 59.023 55.000 9.08 0.00 45.68 3.08
3844 7992 0.528249 GGCGGAATTCGTAAGCGGTA 60.528 55.000 0.00 0.00 41.72 4.02
3853 8001 1.001378 GGGAATGAATGGCGGAATTCG 60.001 52.381 0.00 0.00 39.06 3.34
3913 8061 9.394477 GATGATTTGGTAGAAACAAACAAGTAC 57.606 33.333 0.00 0.00 40.25 2.73
3914 8062 8.573035 GGATGATTTGGTAGAAACAAACAAGTA 58.427 33.333 0.00 0.00 40.25 2.24
3915 8063 7.433680 GGATGATTTGGTAGAAACAAACAAGT 58.566 34.615 0.00 0.00 40.25 3.16
3918 8066 5.048364 CCGGATGATTTGGTAGAAACAAACA 60.048 40.000 0.00 0.00 40.25 2.83
3919 8067 5.399013 CCGGATGATTTGGTAGAAACAAAC 58.601 41.667 0.00 0.00 40.25 2.93
3920 8068 4.461081 CCCGGATGATTTGGTAGAAACAAA 59.539 41.667 0.73 0.00 41.50 2.83
3923 8071 2.357952 GCCCGGATGATTTGGTAGAAAC 59.642 50.000 0.73 0.00 0.00 2.78
3924 8072 2.025793 TGCCCGGATGATTTGGTAGAAA 60.026 45.455 0.73 0.00 0.00 2.52
3966 8134 1.134640 TGCCAACTCGTGTACTTGTGT 60.135 47.619 0.00 0.00 0.00 3.72
3967 8135 1.260561 GTGCCAACTCGTGTACTTGTG 59.739 52.381 0.00 0.00 0.00 3.33
3969 8137 0.865769 GGTGCCAACTCGTGTACTTG 59.134 55.000 0.00 0.00 0.00 3.16
3970 8138 0.756903 AGGTGCCAACTCGTGTACTT 59.243 50.000 0.00 0.00 0.00 2.24
3971 8139 0.033504 CAGGTGCCAACTCGTGTACT 59.966 55.000 0.00 0.00 0.00 2.73
3976 8167 1.837051 TCCTCAGGTGCCAACTCGT 60.837 57.895 0.00 0.00 0.00 4.18
3986 8177 1.289231 TGATAGCTCAGGTCCTCAGGT 59.711 52.381 0.00 0.00 0.00 4.00
4010 8209 4.773674 TGATGTGATTGCATTTCTTCCCTT 59.226 37.500 0.00 0.00 0.00 3.95
4011 8210 4.159135 GTGATGTGATTGCATTTCTTCCCT 59.841 41.667 0.00 0.00 0.00 4.20
4040 8241 2.853914 GAACAGCGCCGAGTGTTC 59.146 61.111 20.12 20.12 44.19 3.18
4118 8319 0.605589 CTTCTCTTGTCCAGCTCCGT 59.394 55.000 0.00 0.00 0.00 4.69
4127 8328 2.682269 GCCCCCAATCTCTTCTCTTGTC 60.682 54.545 0.00 0.00 0.00 3.18
4128 8329 1.283321 GCCCCCAATCTCTTCTCTTGT 59.717 52.381 0.00 0.00 0.00 3.16
4129 8330 1.283029 TGCCCCCAATCTCTTCTCTTG 59.717 52.381 0.00 0.00 0.00 3.02
4130 8331 1.563410 CTGCCCCCAATCTCTTCTCTT 59.437 52.381 0.00 0.00 0.00 2.85
4131 8332 1.211456 CTGCCCCCAATCTCTTCTCT 58.789 55.000 0.00 0.00 0.00 3.10
4132 8333 0.465278 GCTGCCCCCAATCTCTTCTC 60.465 60.000 0.00 0.00 0.00 2.87
4133 8334 1.210204 TGCTGCCCCCAATCTCTTCT 61.210 55.000 0.00 0.00 0.00 2.85
4159 8362 0.322546 GCCATCAGTCGGGGAAAACT 60.323 55.000 0.00 0.00 0.00 2.66
4184 8401 2.099652 CTCCACACCAGAGAACCGCA 62.100 60.000 0.00 0.00 32.86 5.69
4192 8412 0.673985 CACTTCGACTCCACACCAGA 59.326 55.000 0.00 0.00 0.00 3.86
4300 8538 1.336887 GCGATAAATAGCTCTGGCGGA 60.337 52.381 0.00 0.00 44.37 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.