Multiple sequence alignment - TraesCS3A01G334800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G334800 chr3A 100.000 4917 0 0 1 4917 581268045 581263129 0.000000e+00 9081.0
1 TraesCS3A01G334800 chr3A 89.333 225 19 4 139 362 581268395 581268175 1.350000e-70 278.0
2 TraesCS3A01G334800 chr3A 94.262 122 7 0 18 139 264939937 264939816 2.340000e-43 187.0
3 TraesCS3A01G334800 chr3A 100.000 65 0 0 4361 4425 581263635 581263571 2.400000e-23 121.0
4 TraesCS3A01G334800 chr3A 100.000 65 0 0 4411 4475 581263685 581263621 2.400000e-23 121.0
5 TraesCS3A01G334800 chr3D 91.673 2594 157 36 1852 4425 441139640 441137086 0.000000e+00 3539.0
6 TraesCS3A01G334800 chr3D 93.293 1968 75 18 149 2088 441141819 441139881 0.000000e+00 2850.0
7 TraesCS3A01G334800 chr3D 82.857 490 43 19 4427 4908 441137134 441136678 7.670000e-108 401.0
8 TraesCS3A01G334800 chr3D 90.717 237 21 1 1852 2088 441139878 441139643 1.030000e-81 315.0
9 TraesCS3A01G334800 chr3B 90.783 2593 158 32 1852 4425 578391394 578388864 0.000000e+00 3389.0
10 TraesCS3A01G334800 chr3B 93.980 1960 90 14 149 2088 578393348 578391397 0.000000e+00 2940.0
11 TraesCS3A01G334800 chr3B 83.058 484 49 16 4411 4883 578388931 578388470 4.580000e-110 409.0
12 TraesCS3A01G334800 chr3B 87.065 201 13 9 1092 1280 736491586 736491387 1.070000e-51 215.0
13 TraesCS3A01G334800 chr6A 92.105 304 18 2 536 836 594368039 594368339 1.640000e-114 424.0
14 TraesCS3A01G334800 chr6A 87.541 305 30 6 143 445 594367746 594368044 3.640000e-91 346.0
15 TraesCS3A01G334800 chr6A 88.462 234 25 2 1132 1364 283725 283493 1.040000e-71 281.0
16 TraesCS3A01G334800 chr2D 84.615 312 39 8 4574 4876 627039149 627038838 8.000000e-78 302.0
17 TraesCS3A01G334800 chr2D 80.380 316 41 10 4570 4874 99502178 99502483 2.300000e-53 220.0
18 TraesCS3A01G334800 chr2D 80.205 293 38 14 4631 4905 527902449 527902159 8.350000e-48 202.0
19 TraesCS3A01G334800 chr2D 83.125 160 8 11 1092 1233 5934544 5934702 1.440000e-25 128.0
20 TraesCS3A01G334800 chr1A 81.793 368 35 20 4574 4917 313266702 313267061 3.750000e-71 279.0
21 TraesCS3A01G334800 chr1A 98.198 111 2 0 17 127 343396695 343396805 1.400000e-45 195.0
22 TraesCS3A01G334800 chr1A 93.548 124 6 2 18 140 348850076 348849954 3.020000e-42 183.0
23 TraesCS3A01G334800 chr1A 77.844 167 29 7 4724 4883 712891 712726 4.050000e-16 97.1
24 TraesCS3A01G334800 chr6B 83.125 320 34 9 4609 4909 204448726 204449044 1.740000e-69 274.0
25 TraesCS3A01G334800 chr6B 85.532 235 30 4 1132 1364 3380336 3380104 4.920000e-60 243.0
26 TraesCS3A01G334800 chr6B 87.065 201 13 9 1092 1280 463400991 463400792 1.070000e-51 215.0
27 TraesCS3A01G334800 chr1B 97.692 130 3 0 537 666 184230343 184230472 1.780000e-54 224.0
28 TraesCS3A01G334800 chrUn 91.781 146 11 1 1342 1487 51455576 51455720 8.350000e-48 202.0
29 TraesCS3A01G334800 chrUn 75.081 309 56 17 4582 4875 18084079 18083777 1.860000e-24 124.0
30 TraesCS3A01G334800 chr5A 98.198 111 2 0 18 128 69844788 69844898 1.400000e-45 195.0
31 TraesCS3A01G334800 chr5A 96.552 116 3 1 17 131 528581387 528581272 1.810000e-44 191.0
32 TraesCS3A01G334800 chr5A 93.548 124 7 1 10 132 362173228 362173351 3.020000e-42 183.0
33 TraesCS3A01G334800 chr5A 89.583 144 14 1 1344 1487 28620246 28620104 1.090000e-41 182.0
34 TraesCS3A01G334800 chr5A 73.955 311 59 13 4579 4883 577965579 577965285 6.730000e-19 106.0
35 TraesCS3A01G334800 chr4D 98.198 111 2 0 14 124 211385441 211385331 1.400000e-45 195.0
36 TraesCS3A01G334800 chr1D 98.198 111 2 0 17 127 247520957 247521067 1.400000e-45 195.0
37 TraesCS3A01G334800 chr7D 95.726 117 5 0 9 125 474273621 474273737 6.500000e-44 189.0
38 TraesCS3A01G334800 chr2B 84.080 201 19 6 1092 1280 690781998 690781799 1.090000e-41 182.0
39 TraesCS3A01G334800 chr2B 76.000 175 35 7 4594 4765 797408977 797409147 3.150000e-12 84.2
40 TraesCS3A01G334800 chr7B 79.134 254 32 14 4603 4846 570312495 570312737 6.590000e-34 156.0
41 TraesCS3A01G334800 chr7A 82.692 156 23 4 4724 4877 43401584 43401431 8.590000e-28 135.0
42 TraesCS3A01G334800 chr4B 77.586 116 20 6 4805 4917 71221001 71220889 1.140000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G334800 chr3A 581263129 581268045 4916 True 9081.00 9081 100.000000 1 4917 1 chr3A.!!$R2 4916
1 TraesCS3A01G334800 chr3D 441136678 441141819 5141 True 1776.25 3539 89.635000 149 4908 4 chr3D.!!$R1 4759
2 TraesCS3A01G334800 chr3B 578388470 578393348 4878 True 2246.00 3389 89.273667 149 4883 3 chr3B.!!$R2 4734
3 TraesCS3A01G334800 chr6A 594367746 594368339 593 False 385.00 424 89.823000 143 836 2 chr6A.!!$F1 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.099968 TCCGAATTACTCGTCGCAGG 59.900 55.0 0.00 0.00 46.65 4.85 F
364 367 0.166814 GCAGCGAGCTAACAACAAGG 59.833 55.0 0.00 0.00 41.15 3.61 F
866 968 0.317479 ACCTTTTCTGTCGAGACGGG 59.683 55.0 11.67 1.67 38.23 5.28 F
977 1082 0.319383 CCGGAAGATCTGAGCCATCG 60.319 60.0 0.00 0.00 0.00 3.84 F
983 1088 0.528466 GATCTGAGCCATCGAACGCA 60.528 55.0 9.46 0.55 0.00 5.24 F
984 1089 0.529337 ATCTGAGCCATCGAACGCAG 60.529 55.0 9.46 9.64 35.33 5.18 F
2204 2804 0.680921 ATGGGTGATTTGGTGGAGCG 60.681 55.0 0.00 0.00 0.00 5.03 F
2217 2817 0.902984 TGGAGCGGTGCTAGGAGAAA 60.903 55.0 7.84 0.00 39.88 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 1872 2.202743 TTCCCGATGAGCGCGAAG 60.203 61.111 12.10 0.0 39.11 3.79 R
2122 2721 0.945099 ATGCAGATCAAGCTCATGCG 59.055 50.000 10.87 0.0 45.42 4.73 R
2722 3331 0.109342 CCAGAACACAGCCCTGAAGT 59.891 55.000 1.69 0.0 0.00 3.01 R
2894 3503 0.723981 GCCATGCGAGTTGTCTCTTC 59.276 55.000 0.00 0.0 38.45 2.87 R
2943 3552 1.527380 TGGGACAAACGGCAGGAAC 60.527 57.895 0.00 0.0 31.92 3.62 R
2971 3580 9.279904 CAGTTAACTAGATAGAAAGAAGTGACG 57.720 37.037 8.04 0.0 0.00 4.35 R
3141 3751 0.179020 TATCATTCGCTGGCAAGGGG 60.179 55.000 5.16 0.0 36.99 4.79 R
3944 4556 0.389817 CTCGCCGGTCATCAGTTCAA 60.390 55.000 1.90 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.127425 GCCACTCTGAAAGGTGTTACT 57.873 47.619 0.00 0.00 34.59 2.24
21 22 3.067833 GCCACTCTGAAAGGTGTTACTC 58.932 50.000 0.00 0.00 34.59 2.59
22 23 3.665190 CCACTCTGAAAGGTGTTACTCC 58.335 50.000 0.00 0.00 34.59 3.85
23 24 3.557264 CCACTCTGAAAGGTGTTACTCCC 60.557 52.174 0.00 0.00 34.59 4.30
24 25 3.325135 CACTCTGAAAGGTGTTACTCCCT 59.675 47.826 0.00 0.00 32.65 4.20
25 26 3.579151 ACTCTGAAAGGTGTTACTCCCTC 59.421 47.826 0.00 0.00 0.00 4.30
26 27 2.904434 TCTGAAAGGTGTTACTCCCTCC 59.096 50.000 0.00 0.00 0.00 4.30
27 28 2.637872 CTGAAAGGTGTTACTCCCTCCA 59.362 50.000 0.00 0.00 0.00 3.86
28 29 3.256704 TGAAAGGTGTTACTCCCTCCAT 58.743 45.455 0.00 0.00 0.00 3.41
29 30 3.655777 TGAAAGGTGTTACTCCCTCCATT 59.344 43.478 0.00 0.00 0.00 3.16
30 31 4.262617 GAAAGGTGTTACTCCCTCCATTC 58.737 47.826 0.00 0.00 0.00 2.67
31 32 2.197465 AGGTGTTACTCCCTCCATTCC 58.803 52.381 0.00 0.00 0.00 3.01
32 33 1.134491 GGTGTTACTCCCTCCATTCCG 60.134 57.143 0.00 0.00 0.00 4.30
33 34 1.829222 GTGTTACTCCCTCCATTCCGA 59.171 52.381 0.00 0.00 0.00 4.55
34 35 2.235402 GTGTTACTCCCTCCATTCCGAA 59.765 50.000 0.00 0.00 0.00 4.30
35 36 3.112263 TGTTACTCCCTCCATTCCGAAT 58.888 45.455 0.00 0.00 0.00 3.34
36 37 3.521937 TGTTACTCCCTCCATTCCGAATT 59.478 43.478 0.00 0.00 0.00 2.17
37 38 4.717778 TGTTACTCCCTCCATTCCGAATTA 59.282 41.667 0.00 0.00 0.00 1.40
38 39 3.840124 ACTCCCTCCATTCCGAATTAC 57.160 47.619 0.00 0.00 0.00 1.89
39 40 3.385115 ACTCCCTCCATTCCGAATTACT 58.615 45.455 0.00 0.00 0.00 2.24
40 41 3.388350 ACTCCCTCCATTCCGAATTACTC 59.612 47.826 0.00 0.00 0.00 2.59
42 43 2.102588 CCCTCCATTCCGAATTACTCGT 59.897 50.000 0.00 0.00 46.65 4.18
43 44 3.381949 CCTCCATTCCGAATTACTCGTC 58.618 50.000 0.00 0.00 46.65 4.20
44 45 3.043586 CTCCATTCCGAATTACTCGTCG 58.956 50.000 0.00 0.00 46.65 5.12
45 46 1.521423 CCATTCCGAATTACTCGTCGC 59.479 52.381 0.00 0.00 46.65 5.19
46 47 2.190161 CATTCCGAATTACTCGTCGCA 58.810 47.619 0.00 0.00 46.65 5.10
47 48 1.904144 TTCCGAATTACTCGTCGCAG 58.096 50.000 0.00 0.00 46.65 5.18
48 49 0.099968 TCCGAATTACTCGTCGCAGG 59.900 55.000 0.00 0.00 46.65 4.85
49 50 0.179145 CCGAATTACTCGTCGCAGGT 60.179 55.000 0.00 0.00 46.65 4.00
50 51 1.064505 CCGAATTACTCGTCGCAGGTA 59.935 52.381 0.00 0.00 46.65 3.08
51 52 2.287427 CCGAATTACTCGTCGCAGGTAT 60.287 50.000 0.00 0.00 46.65 2.73
52 53 2.719556 CGAATTACTCGTCGCAGGTATG 59.280 50.000 0.00 0.00 42.89 2.39
53 54 2.795175 ATTACTCGTCGCAGGTATGG 57.205 50.000 0.00 0.00 0.00 2.74
54 55 1.753930 TTACTCGTCGCAGGTATGGA 58.246 50.000 0.00 0.00 0.00 3.41
55 56 1.977056 TACTCGTCGCAGGTATGGAT 58.023 50.000 0.00 0.00 0.00 3.41
56 57 0.385751 ACTCGTCGCAGGTATGGATG 59.614 55.000 0.00 0.00 0.00 3.51
57 58 0.385751 CTCGTCGCAGGTATGGATGT 59.614 55.000 0.00 0.00 0.00 3.06
58 59 1.607148 CTCGTCGCAGGTATGGATGTA 59.393 52.381 0.00 0.00 0.00 2.29
59 60 2.229062 CTCGTCGCAGGTATGGATGTAT 59.771 50.000 0.00 0.00 0.00 2.29
60 61 2.228103 TCGTCGCAGGTATGGATGTATC 59.772 50.000 0.00 0.00 0.00 2.24
61 62 2.229062 CGTCGCAGGTATGGATGTATCT 59.771 50.000 0.00 0.00 0.00 1.98
62 63 3.439129 CGTCGCAGGTATGGATGTATCTA 59.561 47.826 0.00 0.00 0.00 1.98
63 64 4.437524 CGTCGCAGGTATGGATGTATCTAG 60.438 50.000 0.00 0.00 0.00 2.43
64 65 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
65 66 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
66 67 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
67 68 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
68 69 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
69 70 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
70 71 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
96 97 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
97 98 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
98 99 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
99 100 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
100 101 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
101 102 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
102 103 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
103 104 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
104 105 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
105 106 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
106 107 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
107 108 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
108 109 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
109 110 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
110 111 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
111 112 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
112 113 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
113 114 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
114 115 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
115 116 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
116 117 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
117 118 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
118 119 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
119 120 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
120 121 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
121 122 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
122 123 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
123 124 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
124 125 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
125 126 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
126 127 1.946984 TTGGAACGGAGGGAGTACAT 58.053 50.000 0.00 0.00 0.00 2.29
127 128 1.481871 TGGAACGGAGGGAGTACATC 58.518 55.000 0.00 0.00 0.00 3.06
170 171 0.463654 TGCACTTCCACCAGTGACAC 60.464 55.000 5.01 0.00 46.29 3.67
171 172 0.463654 GCACTTCCACCAGTGACACA 60.464 55.000 8.59 0.00 46.29 3.72
187 188 4.210120 GTGACACAGTTCAGAACATCACTC 59.790 45.833 21.34 10.00 33.39 3.51
227 228 3.978718 AACTTCAAACTGAGCAAGAGC 57.021 42.857 0.00 0.00 42.56 4.09
245 246 6.734137 CAAGAGCTGGAGTATCTACTACAAG 58.266 44.000 3.95 0.71 45.92 3.16
260 261 7.344134 TCTACTACAAGTATGAACTAGGCAGA 58.656 38.462 0.00 0.00 33.75 4.26
293 294 6.878389 TCTGCAATTGATGACACAGTGTAATA 59.122 34.615 10.34 0.00 0.00 0.98
325 326 1.367346 TCCCTGCCACATTCCAACTA 58.633 50.000 0.00 0.00 0.00 2.24
328 329 2.689983 CCCTGCCACATTCCAACTATTC 59.310 50.000 0.00 0.00 0.00 1.75
362 365 1.304254 TTGCAGCGAGCTAACAACAA 58.696 45.000 0.00 0.00 45.94 2.83
363 366 0.867746 TGCAGCGAGCTAACAACAAG 59.132 50.000 0.00 0.00 45.94 3.16
364 367 0.166814 GCAGCGAGCTAACAACAAGG 59.833 55.000 0.00 0.00 41.15 3.61
376 379 2.795329 ACAACAAGGGAGCATAACTGG 58.205 47.619 0.00 0.00 0.00 4.00
400 403 1.797713 CGTAGAATTCGCGAGGCAAGA 60.798 52.381 9.59 0.00 0.00 3.02
761 863 2.107141 CTCCTCGGGTTCGCCATC 59.893 66.667 0.00 0.00 39.65 3.51
856 958 2.742589 GGCGGAGACTTTACCTTTTCTG 59.257 50.000 0.00 0.00 0.00 3.02
866 968 0.317479 ACCTTTTCTGTCGAGACGGG 59.683 55.000 11.67 1.67 38.23 5.28
926 1031 4.859798 GTCATTTCGAAGGCGGATAGATAG 59.140 45.833 0.00 0.00 38.28 2.08
928 1033 2.201921 TCGAAGGCGGATAGATAGCT 57.798 50.000 0.00 0.00 38.28 3.32
977 1082 0.319383 CCGGAAGATCTGAGCCATCG 60.319 60.000 0.00 0.00 0.00 3.84
983 1088 0.528466 GATCTGAGCCATCGAACGCA 60.528 55.000 9.46 0.55 0.00 5.24
984 1089 0.529337 ATCTGAGCCATCGAACGCAG 60.529 55.000 9.46 9.64 35.33 5.18
1068 1185 2.547595 CCTTCCTCCAGCCCCCAAA 61.548 63.158 0.00 0.00 0.00 3.28
1785 1920 1.438814 CAAATGGATCAAGGCGGCC 59.561 57.895 12.11 12.11 0.00 6.13
1883 2018 6.702329 AGTAAGTCTTCAATTACTGACTGGG 58.298 40.000 7.03 0.00 39.99 4.45
1891 2026 2.093306 TTACTGACTGGGAATGTGCG 57.907 50.000 0.00 0.00 0.00 5.34
1973 2108 5.475909 AGCAATCAGTCAACATTCTGTTCAT 59.524 36.000 0.00 0.00 38.77 2.57
1974 2109 5.798934 GCAATCAGTCAACATTCTGTTCATC 59.201 40.000 0.00 0.00 38.77 2.92
2050 2423 9.692749 CATCTAGTTAGCACCTTATAAATTCGA 57.307 33.333 0.00 0.00 0.00 3.71
2088 2461 8.545472 ACTGCCTATGAGTTTAACACCTAAATA 58.455 33.333 0.00 0.00 32.14 1.40
2090 2463 9.555727 TGCCTATGAGTTTAACACCTAAATATC 57.444 33.333 0.00 0.00 32.14 1.63
2091 2464 9.555727 GCCTATGAGTTTAACACCTAAATATCA 57.444 33.333 0.00 0.00 34.85 2.15
2100 2473 6.834168 AACACCTAAATATCAACTTGTGGG 57.166 37.500 0.00 0.00 0.00 4.61
2101 2474 5.887754 ACACCTAAATATCAACTTGTGGGT 58.112 37.500 0.00 0.00 0.00 4.51
2102 2475 6.311735 ACACCTAAATATCAACTTGTGGGTT 58.688 36.000 0.00 0.00 0.00 4.11
2103 2476 7.463431 ACACCTAAATATCAACTTGTGGGTTA 58.537 34.615 0.00 0.00 0.00 2.85
2104 2477 7.392393 ACACCTAAATATCAACTTGTGGGTTAC 59.608 37.037 0.00 0.00 0.00 2.50
2116 2710 8.830580 CAACTTGTGGGTTACTAGATATCAATG 58.169 37.037 5.32 0.00 35.95 2.82
2117 2711 8.090788 ACTTGTGGGTTACTAGATATCAATGT 57.909 34.615 5.32 3.29 35.95 2.71
2118 2712 8.548877 ACTTGTGGGTTACTAGATATCAATGTT 58.451 33.333 5.32 0.00 35.95 2.71
2119 2713 8.731275 TTGTGGGTTACTAGATATCAATGTTG 57.269 34.615 5.32 0.00 0.00 3.33
2122 2721 8.827677 GTGGGTTACTAGATATCAATGTTGTTC 58.172 37.037 5.32 0.00 0.00 3.18
2143 2742 2.602456 CGCATGAGCTTGATCTGCATTC 60.602 50.000 12.40 4.52 39.10 2.67
2144 2743 2.287668 GCATGAGCTTGATCTGCATTCC 60.288 50.000 12.40 1.94 37.91 3.01
2145 2744 2.793288 TGAGCTTGATCTGCATTCCA 57.207 45.000 12.40 3.93 0.00 3.53
2156 2755 6.519382 TGATCTGCATTCCATACTTACTCTG 58.481 40.000 0.00 0.00 0.00 3.35
2168 2767 6.096423 CCATACTTACTCTGCTGTGGTAGTTA 59.904 42.308 7.05 2.13 0.00 2.24
2169 2768 7.201920 CCATACTTACTCTGCTGTGGTAGTTAT 60.202 40.741 7.05 3.64 0.00 1.89
2200 2800 4.141959 GGAAATGTATGGGTGATTTGGTGG 60.142 45.833 0.00 0.00 0.00 4.61
2201 2801 4.329638 AATGTATGGGTGATTTGGTGGA 57.670 40.909 0.00 0.00 0.00 4.02
2202 2802 3.364460 TGTATGGGTGATTTGGTGGAG 57.636 47.619 0.00 0.00 0.00 3.86
2203 2803 2.024414 GTATGGGTGATTTGGTGGAGC 58.976 52.381 0.00 0.00 0.00 4.70
2204 2804 0.680921 ATGGGTGATTTGGTGGAGCG 60.681 55.000 0.00 0.00 0.00 5.03
2205 2805 2.046285 GGGTGATTTGGTGGAGCGG 61.046 63.158 0.00 0.00 0.00 5.52
2206 2806 1.303317 GGTGATTTGGTGGAGCGGT 60.303 57.895 0.00 0.00 0.00 5.68
2207 2807 1.586154 GGTGATTTGGTGGAGCGGTG 61.586 60.000 0.00 0.00 0.00 4.94
2215 2815 2.052690 GTGGAGCGGTGCTAGGAGA 61.053 63.158 7.84 0.00 39.88 3.71
2217 2817 0.902984 TGGAGCGGTGCTAGGAGAAA 60.903 55.000 7.84 0.00 39.88 2.52
2228 2828 3.202151 TGCTAGGAGAAATTTGGTAGGGG 59.798 47.826 0.00 0.00 0.00 4.79
2230 2830 4.411212 GCTAGGAGAAATTTGGTAGGGGTA 59.589 45.833 0.00 0.00 0.00 3.69
2241 2841 9.470399 AAATTTGGTAGGGGTACATTTAACTAG 57.530 33.333 0.00 0.00 0.00 2.57
2243 2843 7.572546 TTGGTAGGGGTACATTTAACTAGTT 57.427 36.000 13.68 13.68 0.00 2.24
2288 2888 8.236586 TCAACATATTCAGTAAACTTGCATGTC 58.763 33.333 5.61 0.00 0.00 3.06
2289 2889 7.928307 ACATATTCAGTAAACTTGCATGTCT 57.072 32.000 5.61 0.00 0.00 3.41
2308 2908 6.206395 TGTCTTGGCATAACATTAATGGTG 57.794 37.500 16.45 13.36 0.00 4.17
2313 2913 5.659463 TGGCATAACATTAATGGTGAAAGC 58.341 37.500 16.45 13.06 0.00 3.51
2314 2914 4.739716 GGCATAACATTAATGGTGAAAGCG 59.260 41.667 16.45 0.00 36.92 4.68
2316 2916 5.682862 GCATAACATTAATGGTGAAAGCGAG 59.317 40.000 16.45 0.00 36.92 5.03
2330 2930 6.258068 GGTGAAAGCGAGTATTGTTAGCTTAT 59.742 38.462 0.00 0.00 45.97 1.73
2425 3033 7.386848 TGTTAGATGTTCTACAGCCTTGTTAAC 59.613 37.037 0.00 0.00 34.53 2.01
2435 3043 4.335594 ACAGCCTTGTTAACAGTCAAGTTC 59.664 41.667 8.56 0.00 39.25 3.01
2515 3123 4.994852 TCCTTTATTGTGTACTGCTGTGTC 59.005 41.667 6.48 0.55 0.00 3.67
2528 3137 4.074970 CTGCTGTGTCTCCCTTTTATGTT 58.925 43.478 0.00 0.00 0.00 2.71
2648 3257 7.826260 TTTTCTCTTGATTGTTTGGTTTGTC 57.174 32.000 0.00 0.00 0.00 3.18
2677 3286 6.967199 GCTATTTGTACTGTTAACTGGCAATC 59.033 38.462 15.84 7.44 0.00 2.67
2682 3291 3.679389 ACTGTTAACTGGCAATCTGGAG 58.321 45.455 15.84 0.00 0.00 3.86
2693 3302 6.053632 TGGCAATCTGGAGTACATATATGG 57.946 41.667 16.96 0.00 0.00 2.74
2695 3304 5.431765 GCAATCTGGAGTACATATATGGGG 58.568 45.833 16.96 0.00 0.00 4.96
2894 3503 7.439157 TGATTATGTTTCAGTGGAGTTTGAG 57.561 36.000 0.00 0.00 0.00 3.02
2971 3580 2.030274 CCGTTTGTCCCAAATCTTCACC 60.030 50.000 0.00 0.00 0.00 4.02
2975 3584 1.418264 TGTCCCAAATCTTCACCGTCA 59.582 47.619 0.00 0.00 0.00 4.35
3002 3612 9.424319 CTTCTTTCTATCTAGTTAACTGTTGCA 57.576 33.333 18.56 0.00 0.00 4.08
3054 3664 1.139058 GCTCATCCTAGGCTTTTCCGA 59.861 52.381 2.96 0.00 40.77 4.55
3141 3751 7.175641 CCCAAAATCATGAACATCCTAGGATAC 59.824 40.741 24.09 17.36 32.93 2.24
3150 3760 0.645496 TCCTAGGATACCCCTTGCCA 59.355 55.000 7.62 0.00 44.85 4.92
3308 3919 5.736338 CAAACATGTTTTGTGGTGCATTAC 58.264 37.500 21.10 0.00 38.99 1.89
3345 3956 4.640771 AATCTGCTTCCTAGTTGTCCAA 57.359 40.909 0.00 0.00 0.00 3.53
3504 4115 6.481644 GTCTGGAATATGTTGGTCAGAAGATC 59.518 42.308 0.00 0.00 33.78 2.75
3518 4129 1.546029 GAAGATCCAGGTTTGTTGCCC 59.454 52.381 0.00 0.00 0.00 5.36
3529 4140 0.950836 TTGTTGCCCATCTTGTGACG 59.049 50.000 0.00 0.00 0.00 4.35
3558 4170 0.250234 TCTGACCGCTCTCCATTTGG 59.750 55.000 0.00 0.00 0.00 3.28
3590 4202 2.252714 ACTGAAGGTCTGAACTCCCTC 58.747 52.381 0.00 0.00 0.00 4.30
3805 4417 1.625818 AGAAATCCTTCCACGACTGCT 59.374 47.619 0.00 0.00 31.28 4.24
3823 4435 1.002366 CTGTCCAGCAAGCGATACAC 58.998 55.000 0.00 0.00 0.00 2.90
3850 4462 1.132199 CGTACTGCGTCTACGGCAAG 61.132 60.000 4.49 1.33 40.23 4.01
3968 4580 0.179100 CTGATGACCGGCGAGATTGT 60.179 55.000 9.30 0.00 0.00 2.71
3985 4597 1.674359 TGTCAGCGCTTGAAGGAAAA 58.326 45.000 7.50 0.00 37.61 2.29
4015 4627 1.762222 CGTCAAAATCCTAGCGCGGG 61.762 60.000 8.83 14.77 0.00 6.13
4221 4834 7.496529 TTTGAGAGTTGACTGTAAATTCCAG 57.503 36.000 4.08 4.08 36.01 3.86
4327 4940 1.386412 GCCGAAAATGTGAATGCAACG 59.614 47.619 0.00 0.00 0.00 4.10
4348 4961 1.463056 TGTACTGCTAACGTGCAATGC 59.537 47.619 0.00 0.00 42.83 3.56
4375 4988 5.833406 TGTCATATGGGTGCATAAGTTTG 57.167 39.130 2.13 0.00 0.00 2.93
4409 5026 1.126996 GTACAGTCGAAGTCGCTCGC 61.127 60.000 0.00 0.00 38.73 5.03
4410 5027 1.296755 TACAGTCGAAGTCGCTCGCT 61.297 55.000 0.00 0.00 38.73 4.93
4411 5028 2.148982 CAGTCGAAGTCGCTCGCTG 61.149 63.158 0.00 9.45 38.73 5.18
4412 5029 2.876645 GTCGAAGTCGCTCGCTGG 60.877 66.667 0.00 0.00 38.73 4.85
4413 5030 4.116328 TCGAAGTCGCTCGCTGGG 62.116 66.667 0.00 0.00 38.73 4.45
4414 5031 4.421479 CGAAGTCGCTCGCTGGGT 62.421 66.667 0.00 0.00 31.04 4.51
4415 5032 2.811317 GAAGTCGCTCGCTGGGTG 60.811 66.667 0.00 0.00 0.00 4.61
4419 5036 3.457263 TCGCTCGCTGGGTGCATA 61.457 61.111 17.01 3.72 43.06 3.14
4420 5037 2.511373 CGCTCGCTGGGTGCATAA 60.511 61.111 17.01 0.00 43.06 1.90
4421 5038 2.528743 CGCTCGCTGGGTGCATAAG 61.529 63.158 17.01 0.00 43.06 1.73
4422 5039 1.450312 GCTCGCTGGGTGCATAAGT 60.450 57.895 12.96 0.00 43.06 2.24
4423 5040 1.026718 GCTCGCTGGGTGCATAAGTT 61.027 55.000 12.96 0.00 43.06 2.66
4424 5041 1.453155 CTCGCTGGGTGCATAAGTTT 58.547 50.000 0.00 0.00 43.06 2.66
4425 5042 1.131126 CTCGCTGGGTGCATAAGTTTG 59.869 52.381 0.00 0.00 43.06 2.93
4426 5043 0.881118 CGCTGGGTGCATAAGTTTGT 59.119 50.000 0.00 0.00 43.06 2.83
4427 5044 1.269448 CGCTGGGTGCATAAGTTTGTT 59.731 47.619 0.00 0.00 43.06 2.83
4428 5045 2.288152 CGCTGGGTGCATAAGTTTGTTT 60.288 45.455 0.00 0.00 43.06 2.83
4429 5046 3.727726 GCTGGGTGCATAAGTTTGTTTT 58.272 40.909 0.00 0.00 42.31 2.43
4430 5047 4.126437 GCTGGGTGCATAAGTTTGTTTTT 58.874 39.130 0.00 0.00 42.31 1.94
4451 5068 5.640218 TTTTTAACACGGTACAGTCGAAG 57.360 39.130 0.00 0.00 0.00 3.79
4452 5069 3.988379 TTAACACGGTACAGTCGAAGT 57.012 42.857 0.00 0.00 0.00 3.01
4453 5070 2.412421 AACACGGTACAGTCGAAGTC 57.588 50.000 0.00 0.00 0.00 3.01
4454 5071 0.236711 ACACGGTACAGTCGAAGTCG 59.763 55.000 0.00 0.00 41.45 4.18
4455 5072 1.063951 CACGGTACAGTCGAAGTCGC 61.064 60.000 0.00 0.00 39.60 5.19
4456 5073 1.233285 ACGGTACAGTCGAAGTCGCT 61.233 55.000 0.00 0.00 39.60 4.93
4457 5074 0.520827 CGGTACAGTCGAAGTCGCTC 60.521 60.000 0.00 0.00 39.60 5.03
4458 5075 0.520827 GGTACAGTCGAAGTCGCTCG 60.521 60.000 0.00 0.00 40.25 5.03
4510 5127 4.442706 TGTTTGCTGCTAGCTATCCTTAC 58.557 43.478 17.23 6.21 42.97 2.34
4541 5158 6.227522 TCTGATTTTATTCGTGTCCACTCAA 58.772 36.000 0.00 0.00 0.00 3.02
4570 5187 5.106396 GGACATCATATAAGAGGCAATGTGC 60.106 44.000 0.00 0.00 44.08 4.57
4588 5205 2.115266 CAGGAGGGCCGTTTTGGT 59.885 61.111 0.00 0.00 41.21 3.67
4590 5207 1.112916 CAGGAGGGCCGTTTTGGTTT 61.113 55.000 0.00 0.00 41.21 3.27
4592 5209 1.133419 AGGAGGGCCGTTTTGGTTTTA 60.133 47.619 0.00 0.00 41.21 1.52
4607 5224 3.053693 TGGTTTTAGGGTGCATATGCTCT 60.054 43.478 27.13 21.69 42.66 4.09
4616 5233 5.013913 AGGGTGCATATGCTCTCTAATGAAT 59.986 40.000 26.62 5.10 42.84 2.57
4695 5329 4.743151 TCGTTAGTGTAAGAAGTGTGCTTG 59.257 41.667 0.00 0.00 34.61 4.01
4708 5342 5.266733 AGTGTGCTTGACAATTTTCATGT 57.733 34.783 8.70 0.00 35.91 3.21
4714 5348 5.231779 TGCTTGACAATTTTCATGTGAAACG 59.768 36.000 7.63 3.22 43.01 3.60
4715 5349 5.332506 GCTTGACAATTTTCATGTGAAACGG 60.333 40.000 7.63 3.86 43.01 4.44
4733 5367 0.527817 GGGGTGATAGTGCTTCGTCG 60.528 60.000 0.00 0.00 0.00 5.12
4779 5413 8.138712 GTGTAAATTTGGAGGTAACATTTGTCA 58.861 33.333 0.00 0.00 41.41 3.58
4781 5415 9.353999 GTAAATTTGGAGGTAACATTTGTCATC 57.646 33.333 0.00 0.00 41.41 2.92
4782 5416 5.975693 TTTGGAGGTAACATTTGTCATCC 57.024 39.130 0.00 0.00 41.41 3.51
4788 5422 5.313712 AGGTAACATTTGTCATCCGACTTT 58.686 37.500 0.00 0.00 40.73 2.66
4855 5494 2.095768 CAGGTAGCATTTTGGTGTGACG 60.096 50.000 0.00 0.00 0.00 4.35
4866 5505 5.562506 TTTGGTGTGACGAAAAACACATA 57.437 34.783 8.08 0.00 46.83 2.29
4908 5555 1.799933 AACATTTTTGGTGGGCAGGA 58.200 45.000 0.00 0.00 0.00 3.86
4909 5556 2.028561 ACATTTTTGGTGGGCAGGAT 57.971 45.000 0.00 0.00 0.00 3.24
4910 5557 3.182887 ACATTTTTGGTGGGCAGGATA 57.817 42.857 0.00 0.00 0.00 2.59
4911 5558 3.723325 ACATTTTTGGTGGGCAGGATAT 58.277 40.909 0.00 0.00 0.00 1.63
4912 5559 3.451902 ACATTTTTGGTGGGCAGGATATG 59.548 43.478 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.067833 GAGTAACACCTTTCAGAGTGGC 58.932 50.000 0.00 0.00 38.34 5.01
1 2 3.557264 GGGAGTAACACCTTTCAGAGTGG 60.557 52.174 0.00 0.00 38.34 4.00
2 3 3.325135 AGGGAGTAACACCTTTCAGAGTG 59.675 47.826 0.00 0.00 39.93 3.51
3 4 3.579151 GAGGGAGTAACACCTTTCAGAGT 59.421 47.826 0.00 0.00 37.18 3.24
4 5 3.055747 GGAGGGAGTAACACCTTTCAGAG 60.056 52.174 0.00 0.00 37.18 3.35
5 6 2.904434 GGAGGGAGTAACACCTTTCAGA 59.096 50.000 0.00 0.00 37.18 3.27
6 7 2.637872 TGGAGGGAGTAACACCTTTCAG 59.362 50.000 0.00 0.00 37.18 3.02
7 8 2.696775 TGGAGGGAGTAACACCTTTCA 58.303 47.619 0.00 0.00 37.18 2.69
8 9 4.262617 GAATGGAGGGAGTAACACCTTTC 58.737 47.826 0.00 0.00 37.18 2.62
9 10 3.010250 GGAATGGAGGGAGTAACACCTTT 59.990 47.826 0.00 0.00 37.18 3.11
10 11 2.576648 GGAATGGAGGGAGTAACACCTT 59.423 50.000 0.00 0.00 37.18 3.50
11 12 2.197465 GGAATGGAGGGAGTAACACCT 58.803 52.381 0.00 0.00 40.54 4.00
12 13 1.134491 CGGAATGGAGGGAGTAACACC 60.134 57.143 0.00 0.00 0.00 4.16
13 14 1.829222 TCGGAATGGAGGGAGTAACAC 59.171 52.381 0.00 0.00 0.00 3.32
14 15 2.241281 TCGGAATGGAGGGAGTAACA 57.759 50.000 0.00 0.00 0.00 2.41
15 16 3.840124 ATTCGGAATGGAGGGAGTAAC 57.160 47.619 1.68 0.00 0.00 2.50
16 17 4.966805 AGTAATTCGGAATGGAGGGAGTAA 59.033 41.667 3.59 0.00 0.00 2.24
17 18 4.553678 AGTAATTCGGAATGGAGGGAGTA 58.446 43.478 3.59 0.00 0.00 2.59
18 19 3.385115 AGTAATTCGGAATGGAGGGAGT 58.615 45.455 3.59 0.00 0.00 3.85
19 20 3.553096 CGAGTAATTCGGAATGGAGGGAG 60.553 52.174 3.59 0.00 45.54 4.30
20 21 2.364324 CGAGTAATTCGGAATGGAGGGA 59.636 50.000 3.59 0.00 45.54 4.20
21 22 2.755650 CGAGTAATTCGGAATGGAGGG 58.244 52.381 3.59 0.00 45.54 4.30
32 33 3.050619 CCATACCTGCGACGAGTAATTC 58.949 50.000 0.00 0.00 0.00 2.17
33 34 2.691526 TCCATACCTGCGACGAGTAATT 59.308 45.455 0.00 0.00 0.00 1.40
34 35 2.304092 TCCATACCTGCGACGAGTAAT 58.696 47.619 0.00 0.00 0.00 1.89
35 36 1.753930 TCCATACCTGCGACGAGTAA 58.246 50.000 0.00 0.00 0.00 2.24
36 37 1.607148 CATCCATACCTGCGACGAGTA 59.393 52.381 0.00 0.00 0.00 2.59
37 38 0.385751 CATCCATACCTGCGACGAGT 59.614 55.000 0.00 0.00 0.00 4.18
38 39 0.385751 ACATCCATACCTGCGACGAG 59.614 55.000 0.00 0.00 0.00 4.18
39 40 1.682740 TACATCCATACCTGCGACGA 58.317 50.000 0.00 0.00 0.00 4.20
40 41 2.229062 AGATACATCCATACCTGCGACG 59.771 50.000 0.00 0.00 0.00 5.12
41 42 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
42 43 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
43 44 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
44 45 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
70 71 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
71 72 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
72 73 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
73 74 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
74 75 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
75 76 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
76 77 5.562890 CGTCGCAGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 39.69 2.43
77 78 4.618912 CGTCGCAGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 39.69 2.43
78 79 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
79 80 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
80 81 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
81 82 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
82 83 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
83 84 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
84 85 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
85 86 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
86 87 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
87 88 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
88 89 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
89 90 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
90 91 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
91 92 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
92 93 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
93 94 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
94 95 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
95 96 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
96 97 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
97 98 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
98 99 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
99 100 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
100 101 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
101 102 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
102 103 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
103 104 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
104 105 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
105 106 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
106 107 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
107 108 1.829222 GATGTACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
108 109 1.481871 GATGTACTCCCTCCGTTCCA 58.518 55.000 0.00 0.00 0.00 3.53
109 110 0.751452 GGATGTACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 38.19 3.62
110 111 1.777941 AGGATGTACTCCCTCCGTTC 58.222 55.000 7.50 0.00 46.27 3.95
111 112 3.393426 TTAGGATGTACTCCCTCCGTT 57.607 47.619 9.41 0.00 46.27 4.44
112 113 3.393426 TTTAGGATGTACTCCCTCCGT 57.607 47.619 9.41 0.00 46.27 4.69
113 114 3.069729 CCTTTTAGGATGTACTCCCTCCG 59.930 52.174 9.41 0.00 46.27 4.63
114 115 4.296056 TCCTTTTAGGATGTACTCCCTCC 58.704 47.826 9.41 3.69 46.27 4.30
124 125 8.156745 GCACAAACATGCTATCCTTTTAGGATG 61.157 40.741 16.61 10.30 46.44 3.51
125 126 6.183360 GCACAAACATGCTATCCTTTTAGGAT 60.183 38.462 12.53 12.53 45.64 3.24
126 127 5.125417 GCACAAACATGCTATCCTTTTAGGA 59.875 40.000 0.00 0.00 44.88 2.94
127 128 5.343249 GCACAAACATGCTATCCTTTTAGG 58.657 41.667 0.00 0.00 42.62 2.69
139 140 1.134226 GAAGTGCAGCACAAACATGC 58.866 50.000 27.35 0.71 46.50 4.06
140 141 1.067364 TGGAAGTGCAGCACAAACATG 59.933 47.619 27.35 0.00 36.74 3.21
141 142 1.067516 GTGGAAGTGCAGCACAAACAT 59.932 47.619 27.35 7.82 36.74 2.71
146 147 1.526686 CTGGTGGAAGTGCAGCACA 60.527 57.895 27.35 3.59 36.74 4.57
147 148 1.526917 ACTGGTGGAAGTGCAGCAC 60.527 57.895 18.55 18.55 34.10 4.40
198 199 8.445275 TTGCTCAGTTTGAAGTTTATAGTGAA 57.555 30.769 0.00 0.00 0.00 3.18
227 228 9.344772 AGTTCATACTTGTAGTAGATACTCCAG 57.655 37.037 0.00 0.00 37.73 3.86
245 246 5.855740 AGTAAGGTCTGCCTAGTTCATAC 57.144 43.478 0.00 0.00 46.33 2.39
260 261 5.182001 GTGTCATCAATTGCAGAAGTAAGGT 59.818 40.000 0.00 0.00 0.00 3.50
264 265 5.179929 CACTGTGTCATCAATTGCAGAAGTA 59.820 40.000 13.35 0.00 0.00 2.24
293 294 5.704354 TGTGGCAGGGATGATGTAAAATAT 58.296 37.500 0.00 0.00 0.00 1.28
298 299 3.554934 GAATGTGGCAGGGATGATGTAA 58.445 45.455 0.00 0.00 0.00 2.41
325 326 7.384660 TCGCTGCAAAAATTGTTTCAATAGAAT 59.615 29.630 0.00 0.00 32.89 2.40
328 329 6.450845 TCGCTGCAAAAATTGTTTCAATAG 57.549 33.333 0.00 0.00 0.00 1.73
340 341 2.098280 TGTTGTTAGCTCGCTGCAAAAA 59.902 40.909 0.85 0.00 45.94 1.94
362 365 1.628846 ACGTTTCCAGTTATGCTCCCT 59.371 47.619 0.00 0.00 0.00 4.20
363 366 2.109425 ACGTTTCCAGTTATGCTCCC 57.891 50.000 0.00 0.00 0.00 4.30
364 367 4.119442 TCTACGTTTCCAGTTATGCTCC 57.881 45.455 0.00 0.00 0.00 4.70
376 379 1.006287 GCCTCGCGAATTCTACGTTTC 60.006 52.381 11.33 0.00 0.00 2.78
400 403 1.614824 CTCCCAAGTGAGCTCCCCT 60.615 63.158 12.15 4.05 0.00 4.79
866 968 4.681978 AGTGACAGTTCGCCGGCC 62.682 66.667 23.46 7.02 32.06 6.13
926 1031 4.453819 CGAATGGGAGGAAATATCTTCAGC 59.546 45.833 0.00 0.00 33.51 4.26
928 1033 4.746702 GCCGAATGGGAGGAAATATCTTCA 60.747 45.833 0.00 0.00 38.47 3.02
962 1067 1.804372 GCGTTCGATGGCTCAGATCTT 60.804 52.381 0.00 0.00 0.00 2.40
977 1082 3.774702 GCCGTCCGTTCTGCGTTC 61.775 66.667 0.00 0.00 39.32 3.95
983 1088 1.749638 ATCGAGAGCCGTCCGTTCT 60.750 57.895 0.00 0.00 39.75 3.01
984 1089 1.586564 CATCGAGAGCCGTCCGTTC 60.587 63.158 0.00 0.00 39.75 3.95
1737 1872 2.202743 TTCCCGATGAGCGCGAAG 60.203 61.111 12.10 0.00 39.11 3.79
1785 1920 3.598019 AACACCAAATTATGCAGGCTG 57.402 42.857 10.94 10.94 0.00 4.85
1883 2018 7.684670 TCTACTACAATTCAAATCGCACATTC 58.315 34.615 0.00 0.00 0.00 2.67
1973 2108 4.279922 TGGACGATTTCACTCTTACACTGA 59.720 41.667 0.00 0.00 0.00 3.41
1974 2109 4.556233 TGGACGATTTCACTCTTACACTG 58.444 43.478 0.00 0.00 0.00 3.66
2050 2423 7.863901 ACTCATAGGCAGTTATCTTCCTTAT 57.136 36.000 0.00 0.00 38.26 1.73
2054 2427 7.769044 TGTTAAACTCATAGGCAGTTATCTTCC 59.231 37.037 0.00 0.00 32.71 3.46
2062 2435 4.910458 AGGTGTTAAACTCATAGGCAGT 57.090 40.909 0.00 0.00 0.00 4.40
2088 2461 8.319057 TGATATCTAGTAACCCACAAGTTGAT 57.681 34.615 10.54 0.00 0.00 2.57
2090 2463 8.830580 CATTGATATCTAGTAACCCACAAGTTG 58.169 37.037 3.98 0.00 0.00 3.16
2091 2464 8.548877 ACATTGATATCTAGTAACCCACAAGTT 58.451 33.333 3.98 0.00 0.00 2.66
2092 2465 8.090788 ACATTGATATCTAGTAACCCACAAGT 57.909 34.615 3.98 0.00 0.00 3.16
2094 2467 8.325787 ACAACATTGATATCTAGTAACCCACAA 58.674 33.333 3.98 0.00 0.00 3.33
2095 2468 7.857456 ACAACATTGATATCTAGTAACCCACA 58.143 34.615 3.98 0.00 0.00 4.17
2097 2470 7.709182 CGAACAACATTGATATCTAGTAACCCA 59.291 37.037 3.98 0.00 0.00 4.51
2098 2471 7.307219 GCGAACAACATTGATATCTAGTAACCC 60.307 40.741 3.98 0.00 0.00 4.11
2100 2473 8.126871 TGCGAACAACATTGATATCTAGTAAC 57.873 34.615 3.98 0.00 0.00 2.50
2101 2474 8.764287 CATGCGAACAACATTGATATCTAGTAA 58.236 33.333 3.98 0.00 0.00 2.24
2102 2475 8.141268 TCATGCGAACAACATTGATATCTAGTA 58.859 33.333 3.98 0.00 0.00 1.82
2103 2476 6.986231 TCATGCGAACAACATTGATATCTAGT 59.014 34.615 3.98 0.00 0.00 2.57
2104 2477 7.412137 TCATGCGAACAACATTGATATCTAG 57.588 36.000 3.98 0.00 0.00 2.43
2116 2710 2.417933 AGATCAAGCTCATGCGAACAAC 59.582 45.455 0.00 0.00 45.42 3.32
2117 2711 2.417586 CAGATCAAGCTCATGCGAACAA 59.582 45.455 0.00 0.00 45.42 2.83
2118 2712 2.004733 CAGATCAAGCTCATGCGAACA 58.995 47.619 0.00 0.00 45.42 3.18
2119 2713 1.267932 GCAGATCAAGCTCATGCGAAC 60.268 52.381 0.00 0.00 45.42 3.95
2122 2721 0.945099 ATGCAGATCAAGCTCATGCG 59.055 50.000 10.87 0.00 45.42 4.73
2143 2742 3.895232 ACCACAGCAGAGTAAGTATGG 57.105 47.619 0.00 0.00 0.00 2.74
2144 2743 5.584253 ACTACCACAGCAGAGTAAGTATG 57.416 43.478 0.00 0.00 0.00 2.39
2145 2744 7.899648 ATAACTACCACAGCAGAGTAAGTAT 57.100 36.000 0.00 0.00 0.00 2.12
2200 2800 2.317530 AATTTCTCCTAGCACCGCTC 57.682 50.000 0.00 0.00 40.44 5.03
2201 2801 2.359900 CAAATTTCTCCTAGCACCGCT 58.640 47.619 0.00 0.00 43.41 5.52
2202 2802 1.401905 CCAAATTTCTCCTAGCACCGC 59.598 52.381 0.00 0.00 0.00 5.68
2203 2803 2.711542 ACCAAATTTCTCCTAGCACCG 58.288 47.619 0.00 0.00 0.00 4.94
2204 2804 4.200092 CCTACCAAATTTCTCCTAGCACC 58.800 47.826 0.00 0.00 0.00 5.01
2205 2805 4.200092 CCCTACCAAATTTCTCCTAGCAC 58.800 47.826 0.00 0.00 0.00 4.40
2206 2806 3.202151 CCCCTACCAAATTTCTCCTAGCA 59.798 47.826 0.00 0.00 0.00 3.49
2207 2807 3.202373 ACCCCTACCAAATTTCTCCTAGC 59.798 47.826 0.00 0.00 0.00 3.42
2215 2815 9.470399 CTAGTTAAATGTACCCCTACCAAATTT 57.530 33.333 0.00 0.00 0.00 1.82
2217 2817 8.166479 ACTAGTTAAATGTACCCCTACCAAAT 57.834 34.615 0.00 0.00 0.00 2.32
2272 2872 3.004629 TGCCAAGACATGCAAGTTTACTG 59.995 43.478 0.00 0.00 33.87 2.74
2273 2873 3.221771 TGCCAAGACATGCAAGTTTACT 58.778 40.909 0.00 0.00 33.87 2.24
2288 2888 6.256321 GCTTTCACCATTAATGTTATGCCAAG 59.744 38.462 14.25 13.35 0.00 3.61
2289 2889 6.105333 GCTTTCACCATTAATGTTATGCCAA 58.895 36.000 14.25 5.66 0.00 4.52
2308 2908 9.556030 AAAAATAAGCTAACAATACTCGCTTTC 57.444 29.630 0.00 0.00 40.88 2.62
2350 2950 7.992608 AGCCACAGAACATACATATAACATTGA 59.007 33.333 0.00 0.00 0.00 2.57
2425 3033 4.837093 TTATGTAGGGGGAACTTGACTG 57.163 45.455 0.00 0.00 0.00 3.51
2435 3043 5.548056 ACATCTAACAGGATTATGTAGGGGG 59.452 44.000 0.00 0.00 31.70 5.40
2515 3123 7.201652 GCAAGTTAGCTAGAACATAAAAGGGAG 60.202 40.741 0.00 0.00 0.00 4.30
2528 3137 1.552578 TCCACGGCAAGTTAGCTAGA 58.447 50.000 0.00 0.00 34.17 2.43
2619 3228 9.671279 AAACCAAACAATCAAGAGAAAATTCTT 57.329 25.926 0.00 0.00 37.73 2.52
2623 3232 8.040132 TGACAAACCAAACAATCAAGAGAAAAT 58.960 29.630 0.00 0.00 0.00 1.82
2648 3257 6.183360 GCCAGTTAACAGTACAAATAGCTCTG 60.183 42.308 8.61 0.00 0.00 3.35
2677 3286 6.494952 AGACTACCCCATATATGTACTCCAG 58.505 44.000 11.73 3.98 0.00 3.86
2722 3331 0.109342 CCAGAACACAGCCCTGAAGT 59.891 55.000 1.69 0.00 0.00 3.01
2894 3503 0.723981 GCCATGCGAGTTGTCTCTTC 59.276 55.000 0.00 0.00 38.45 2.87
2943 3552 1.527380 TGGGACAAACGGCAGGAAC 60.527 57.895 0.00 0.00 31.92 3.62
2971 3580 9.279904 CAGTTAACTAGATAGAAAGAAGTGACG 57.720 37.037 8.04 0.00 0.00 4.35
2975 3584 9.425577 GCAACAGTTAACTAGATAGAAAGAAGT 57.574 33.333 8.04 0.00 0.00 3.01
3002 3612 1.377725 GCTGGTGGCTGCAGTACAT 60.378 57.895 16.64 0.00 38.06 2.29
3027 3637 3.010200 AGCCTAGGATGAGCAAAAAGG 57.990 47.619 14.75 0.00 0.00 3.11
3121 3731 4.785376 GGGGTATCCTAGGATGTTCATGAT 59.215 45.833 31.06 7.71 36.17 2.45
3141 3751 0.179020 TATCATTCGCTGGCAAGGGG 60.179 55.000 5.16 0.00 36.99 4.79
3150 3760 9.736023 GTAATTTCTGGAATTTTATCATTCGCT 57.264 29.630 0.00 0.00 38.80 4.93
3308 3919 6.192234 AGCAGATTTGATAAGACAAGCAAG 57.808 37.500 0.00 0.00 0.00 4.01
3320 3931 5.189180 GGACAACTAGGAAGCAGATTTGAT 58.811 41.667 0.00 0.00 0.00 2.57
3444 4055 7.472334 AAATCTTGGATGCTCAAACTTGTAT 57.528 32.000 0.00 0.00 0.00 2.29
3504 4115 1.001181 CAAGATGGGCAACAAACCTGG 59.999 52.381 0.00 0.00 39.74 4.45
3518 4129 3.607422 TGCTGAAAACGTCACAAGATG 57.393 42.857 0.00 0.00 36.81 2.90
3529 4140 1.129437 GAGCGGTCAGATGCTGAAAAC 59.871 52.381 10.30 0.00 42.46 2.43
3590 4202 6.046290 TGCCAATACTAGATCCTGATCATG 57.954 41.667 9.65 0.00 40.22 3.07
3805 4417 0.735978 CGTGTATCGCTTGCTGGACA 60.736 55.000 0.00 0.00 0.00 4.02
3944 4556 0.389817 CTCGCCGGTCATCAGTTCAA 60.390 55.000 1.90 0.00 0.00 2.69
3985 4597 2.231235 GGATTTTGACGACCCTGCATTT 59.769 45.455 0.00 0.00 0.00 2.32
3997 4609 0.743345 ACCCGCGCTAGGATTTTGAC 60.743 55.000 19.07 0.00 0.00 3.18
4015 4627 1.941734 CGGAAGAGCGCGATCTGAC 60.942 63.158 29.44 23.11 0.00 3.51
4028 4640 2.124942 GGGCTCAGGCTTCGGAAG 60.125 66.667 13.39 13.39 38.73 3.46
4054 4666 0.810648 TGCTTGCTTTAATCTGCGGG 59.189 50.000 0.00 0.00 0.00 6.13
4221 4834 3.304293 GCTGTTTGTGTTTCTGCTCAAAC 59.696 43.478 13.42 13.42 45.41 2.93
4261 4874 3.819337 TCACGGATAACTCTATCTTCCCG 59.181 47.826 0.00 0.00 35.23 5.14
4262 4875 5.071370 TCTCACGGATAACTCTATCTTCCC 58.929 45.833 0.00 0.00 35.23 3.97
4327 4940 2.724839 GCATTGCACGTTAGCAGTACAC 60.725 50.000 3.15 0.00 46.54 2.90
4348 4961 5.302568 ACTTATGCACCCATATGACAAATGG 59.697 40.000 3.65 0.00 43.06 3.16
4389 5006 0.520827 CGAGCGACTTCGACTGTACC 60.521 60.000 2.02 0.00 43.03 3.34
4395 5012 2.876645 CCAGCGAGCGACTTCGAC 60.877 66.667 2.02 0.00 43.03 4.20
4429 5046 5.108517 ACTTCGACTGTACCGTGTTAAAAA 58.891 37.500 0.00 0.00 0.00 1.94
4430 5047 4.681744 ACTTCGACTGTACCGTGTTAAAA 58.318 39.130 0.00 0.00 0.00 1.52
4431 5048 4.290155 GACTTCGACTGTACCGTGTTAAA 58.710 43.478 0.00 0.00 0.00 1.52
4432 5049 3.606846 CGACTTCGACTGTACCGTGTTAA 60.607 47.826 0.00 0.00 43.02 2.01
4433 5050 2.096268 CGACTTCGACTGTACCGTGTTA 60.096 50.000 0.00 0.00 43.02 2.41
4434 5051 1.334419 CGACTTCGACTGTACCGTGTT 60.334 52.381 0.00 0.00 43.02 3.32
4435 5052 0.236711 CGACTTCGACTGTACCGTGT 59.763 55.000 0.00 0.00 43.02 4.49
4436 5053 1.063951 GCGACTTCGACTGTACCGTG 61.064 60.000 2.02 0.00 43.02 4.94
4437 5054 1.208614 GCGACTTCGACTGTACCGT 59.791 57.895 2.02 0.00 43.02 4.83
4438 5055 0.520827 GAGCGACTTCGACTGTACCG 60.521 60.000 2.02 0.00 43.02 4.02
4439 5056 0.520827 CGAGCGACTTCGACTGTACC 60.521 60.000 2.02 0.00 43.03 3.34
4440 5057 1.126996 GCGAGCGACTTCGACTGTAC 61.127 60.000 2.02 0.00 43.03 2.90
4441 5058 1.134075 GCGAGCGACTTCGACTGTA 59.866 57.895 2.02 0.00 43.03 2.74
4442 5059 2.126812 GCGAGCGACTTCGACTGT 60.127 61.111 2.02 0.00 43.03 3.55
4443 5060 2.148982 CAGCGAGCGACTTCGACTG 61.149 63.158 2.02 10.02 43.03 3.51
4444 5061 2.177038 CAGCGAGCGACTTCGACT 59.823 61.111 2.02 0.00 43.03 4.18
4445 5062 2.876645 CCAGCGAGCGACTTCGAC 60.877 66.667 2.02 0.00 43.03 4.20
4446 5063 4.116328 CCCAGCGAGCGACTTCGA 62.116 66.667 2.02 0.00 43.03 3.71
4447 5064 4.421479 ACCCAGCGAGCGACTTCG 62.421 66.667 0.00 0.00 43.23 3.79
4448 5065 2.811317 CACCCAGCGAGCGACTTC 60.811 66.667 0.00 0.00 0.00 3.01
4455 5072 6.427704 AAGATAAACTTATGCACCCAGCGAG 61.428 44.000 0.00 0.00 41.01 5.03
4456 5073 4.625324 AAGATAAACTTATGCACCCAGCGA 60.625 41.667 0.00 0.00 41.01 4.93
4457 5074 3.627577 AAGATAAACTTATGCACCCAGCG 59.372 43.478 0.00 0.00 41.01 5.18
4458 5075 4.399303 ACAAGATAAACTTATGCACCCAGC 59.601 41.667 0.00 0.00 39.50 4.85
4510 5127 6.414408 ACACGAATAAAATCAGAGCTTGAG 57.586 37.500 0.00 0.00 39.68 3.02
4541 5158 4.598807 TGCCTCTTATATGATGTCCATGGT 59.401 41.667 12.58 0.00 36.71 3.55
4570 5187 2.676471 CCAAAACGGCCCTCCTGG 60.676 66.667 0.00 0.00 37.09 4.45
4572 5189 0.397957 AAAACCAAAACGGCCCTCCT 60.398 50.000 0.00 0.00 39.03 3.69
4588 5205 4.778213 AGAGAGCATATGCACCCTAAAA 57.222 40.909 28.62 0.00 45.16 1.52
4590 5207 5.543790 TCATTAGAGAGCATATGCACCCTAA 59.456 40.000 28.62 25.93 45.16 2.69
4592 5209 3.906218 TCATTAGAGAGCATATGCACCCT 59.094 43.478 28.62 20.66 45.16 4.34
4662 5296 9.754382 ACTTCTTACACTAACGAGAACATTTAA 57.246 29.630 0.00 0.00 0.00 1.52
4663 5297 9.188588 CACTTCTTACACTAACGAGAACATTTA 57.811 33.333 0.00 0.00 0.00 1.40
4664 5298 7.709613 ACACTTCTTACACTAACGAGAACATTT 59.290 33.333 0.00 0.00 0.00 2.32
4665 5299 7.169308 CACACTTCTTACACTAACGAGAACATT 59.831 37.037 0.00 0.00 0.00 2.71
4666 5300 6.641314 CACACTTCTTACACTAACGAGAACAT 59.359 38.462 0.00 0.00 0.00 2.71
4667 5301 5.975344 CACACTTCTTACACTAACGAGAACA 59.025 40.000 0.00 0.00 0.00 3.18
4668 5302 5.107951 GCACACTTCTTACACTAACGAGAAC 60.108 44.000 0.00 0.00 0.00 3.01
4669 5303 4.980434 GCACACTTCTTACACTAACGAGAA 59.020 41.667 0.00 0.00 0.00 2.87
4673 5307 4.743151 TCAAGCACACTTCTTACACTAACG 59.257 41.667 0.00 0.00 32.29 3.18
4684 5318 5.750067 ACATGAAAATTGTCAAGCACACTTC 59.250 36.000 1.55 0.00 33.41 3.01
4695 5329 3.987220 CCCCGTTTCACATGAAAATTGTC 59.013 43.478 8.58 0.00 44.58 3.18
4708 5342 0.981183 AGCACTATCACCCCGTTTCA 59.019 50.000 0.00 0.00 0.00 2.69
4714 5348 0.527817 CGACGAAGCACTATCACCCC 60.528 60.000 0.00 0.00 0.00 4.95
4715 5349 0.527817 CCGACGAAGCACTATCACCC 60.528 60.000 0.00 0.00 0.00 4.61
4748 5382 9.582648 AATGTTACCTCCAAATTTACACTTACT 57.417 29.630 0.00 0.00 0.00 2.24
4751 5385 8.700973 ACAAATGTTACCTCCAAATTTACACTT 58.299 29.630 0.00 0.00 0.00 3.16
4752 5386 8.245195 ACAAATGTTACCTCCAAATTTACACT 57.755 30.769 0.00 0.00 0.00 3.55
4753 5387 8.138712 TGACAAATGTTACCTCCAAATTTACAC 58.861 33.333 0.00 0.00 0.00 2.90
4754 5388 8.239038 TGACAAATGTTACCTCCAAATTTACA 57.761 30.769 0.00 0.00 0.00 2.41
4755 5389 9.353999 GATGACAAATGTTACCTCCAAATTTAC 57.646 33.333 0.00 0.00 0.00 2.01
4756 5390 8.527810 GGATGACAAATGTTACCTCCAAATTTA 58.472 33.333 0.00 0.00 0.00 1.40
4757 5391 7.386059 GGATGACAAATGTTACCTCCAAATTT 58.614 34.615 0.00 0.00 0.00 1.82
4758 5392 6.350110 CGGATGACAAATGTTACCTCCAAATT 60.350 38.462 0.00 0.00 0.00 1.82
4759 5393 5.125417 CGGATGACAAATGTTACCTCCAAAT 59.875 40.000 0.00 0.00 0.00 2.32
4760 5394 4.457603 CGGATGACAAATGTTACCTCCAAA 59.542 41.667 0.00 0.00 0.00 3.28
4761 5395 4.006989 CGGATGACAAATGTTACCTCCAA 58.993 43.478 0.00 0.00 0.00 3.53
4762 5396 3.262151 TCGGATGACAAATGTTACCTCCA 59.738 43.478 0.00 0.00 0.00 3.86
4763 5397 3.621715 GTCGGATGACAAATGTTACCTCC 59.378 47.826 0.00 0.00 44.82 4.30
4764 5398 4.859629 GTCGGATGACAAATGTTACCTC 57.140 45.455 0.00 0.00 44.82 3.85
4794 5428 7.862873 GGAAAGCTTAAGTATTTGATATGTGCC 59.137 37.037 0.00 2.75 0.00 5.01
4795 5429 8.624776 AGGAAAGCTTAAGTATTTGATATGTGC 58.375 33.333 0.00 0.00 0.00 4.57
4797 5431 9.343539 GGAGGAAAGCTTAAGTATTTGATATGT 57.656 33.333 0.00 0.00 0.00 2.29
4798 5432 8.787852 GGGAGGAAAGCTTAAGTATTTGATATG 58.212 37.037 0.00 0.00 0.00 1.78
4799 5433 8.502738 TGGGAGGAAAGCTTAAGTATTTGATAT 58.497 33.333 0.00 0.00 0.00 1.63
4801 5435 6.731467 TGGGAGGAAAGCTTAAGTATTTGAT 58.269 36.000 0.00 2.22 0.00 2.57
4802 5436 6.134535 TGGGAGGAAAGCTTAAGTATTTGA 57.865 37.500 0.00 0.00 0.00 2.69
4803 5437 6.834168 TTGGGAGGAAAGCTTAAGTATTTG 57.166 37.500 0.00 0.00 0.00 2.32
4814 5453 3.475575 TGCAAATTTTTGGGAGGAAAGC 58.524 40.909 5.28 0.00 38.57 3.51
4887 5534 2.507471 TCCTGCCCACCAAAAATGTTTT 59.493 40.909 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.