Multiple sequence alignment - TraesCS3A01G334500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G334500 chr3A 100.000 5703 0 0 1 5703 581249781 581255483 0.000000e+00 10532.0
1 TraesCS3A01G334500 chr3D 94.024 3062 114 23 2179 5203 441125030 441128059 0.000000e+00 4577.0
2 TraesCS3A01G334500 chr3D 87.352 1771 102 50 1 1695 441123151 441124875 0.000000e+00 1917.0
3 TraesCS3A01G334500 chr3D 91.845 466 37 1 5235 5700 456931207 456931671 0.000000e+00 649.0
4 TraesCS3A01G334500 chr3D 90.503 179 15 2 1724 1902 526977789 526977613 9.550000e-58 235.0
5 TraesCS3A01G334500 chr3D 97.500 40 1 0 1987 2026 26227915 26227876 1.030000e-07 69.4
6 TraesCS3A01G334500 chr3B 88.277 2107 173 33 2121 4175 578275974 578278058 0.000000e+00 2455.0
7 TraesCS3A01G334500 chr3B 86.096 1424 105 52 343 1721 578274431 578275806 0.000000e+00 1447.0
8 TraesCS3A01G334500 chr3B 92.416 712 29 11 4487 5192 578278384 578279076 0.000000e+00 992.0
9 TraesCS3A01G334500 chr3B 85.989 364 24 8 1 347 578273981 578274334 1.170000e-96 364.0
10 TraesCS3A01G334500 chr3B 85.870 276 31 5 4208 4477 578278064 578278337 2.600000e-73 287.0
11 TraesCS3A01G334500 chr1A 97.095 482 12 1 5222 5703 90804911 90805390 0.000000e+00 811.0
12 TraesCS3A01G334500 chr5A 97.452 471 12 0 5233 5703 619721703 619721233 0.000000e+00 804.0
13 TraesCS3A01G334500 chr5A 97.246 472 13 0 5232 5703 540036587 540036116 0.000000e+00 800.0
14 TraesCS3A01G334500 chr5A 80.425 424 72 6 5242 5656 632907227 632907648 4.290000e-81 313.0
15 TraesCS3A01G334500 chr5A 85.185 81 7 3 2052 2132 572842800 572842875 1.700000e-10 78.7
16 TraesCS3A01G334500 chr5A 83.529 85 9 2 2052 2136 309680249 309680170 2.200000e-09 75.0
17 TraesCS3A01G334500 chr5A 89.796 49 5 0 1987 2035 404563316 404563268 4.770000e-06 63.9
18 TraesCS3A01G334500 chr7A 96.815 471 15 0 5233 5703 677726295 677725825 0.000000e+00 787.0
19 TraesCS3A01G334500 chr7A 91.713 181 13 2 1723 1902 115736438 115736259 3.410000e-62 250.0
20 TraesCS3A01G334500 chr7A 81.461 178 25 8 1036 1208 617853404 617853578 7.710000e-29 139.0
21 TraesCS3A01G334500 chr7A 82.051 78 9 2 2052 2129 734515591 734515663 1.720000e-05 62.1
22 TraesCS3A01G334500 chr7D 94.692 471 24 1 5233 5703 107323856 107323387 0.000000e+00 730.0
23 TraesCS3A01G334500 chr7D 81.705 481 41 22 435 883 549307771 549307306 1.950000e-94 357.0
24 TraesCS3A01G334500 chr7D 90.659 182 14 2 1723 1902 540860184 540860364 7.380000e-59 239.0
25 TraesCS3A01G334500 chr7D 82.022 178 24 8 1036 1208 535730191 535730017 1.660000e-30 145.0
26 TraesCS3A01G334500 chr7D 85.366 82 7 2 2048 2129 568370012 568370088 4.740000e-11 80.5
27 TraesCS3A01G334500 chr7D 84.146 82 8 2 2048 2129 625355913 625355837 2.200000e-09 75.0
28 TraesCS3A01G334500 chr7D 97.500 40 1 0 1986 2025 74962851 74962890 1.030000e-07 69.4
29 TraesCS3A01G334500 chr2D 93.856 472 25 3 5233 5703 33911155 33911623 0.000000e+00 708.0
30 TraesCS3A01G334500 chr2D 91.667 60 5 0 844 903 620269429 620269488 3.660000e-12 84.2
31 TraesCS3A01G334500 chr2D 85.185 81 7 2 2049 2129 61023719 61023794 1.700000e-10 78.7
32 TraesCS3A01G334500 chr2D 100.000 40 0 0 1987 2026 567483502 567483541 2.200000e-09 75.0
33 TraesCS3A01G334500 chrUn 90.229 481 33 7 994 1464 355025624 355025148 2.920000e-172 616.0
34 TraesCS3A01G334500 chrUn 88.916 406 29 8 1067 1461 442532468 442532868 2.390000e-133 486.0
35 TraesCS3A01G334500 chrUn 100.000 59 0 0 994 1052 453488518 453488576 6.040000e-20 110.0
36 TraesCS3A01G334500 chrUn 82.418 91 10 4 2052 2141 105368168 105368253 2.200000e-09 75.0
37 TraesCS3A01G334500 chr4A 88.578 464 34 12 5240 5703 694746735 694746291 3.890000e-151 545.0
38 TraesCS3A01G334500 chr1D 84.501 471 55 7 5236 5698 489971187 489970727 3.130000e-122 449.0
39 TraesCS3A01G334500 chr1D 86.076 79 10 1 2052 2129 141215322 141215244 3.660000e-12 84.2
40 TraesCS3A01G334500 chr7B 90.943 265 21 2 5231 5494 456496068 456496330 2.530000e-93 353.0
41 TraesCS3A01G334500 chr7B 82.584 178 23 8 1036 1208 577565806 577565632 3.560000e-32 150.0
42 TraesCS3A01G334500 chr2B 81.524 433 67 8 5234 5656 667242088 667241659 1.520000e-90 344.0
43 TraesCS3A01G334500 chr2B 97.500 40 1 0 1987 2026 680200091 680200130 1.030000e-07 69.4
44 TraesCS3A01G334500 chr1B 95.294 170 8 0 5234 5403 14090887 14090718 2.620000e-68 270.0
45 TraesCS3A01G334500 chr1B 94.706 170 9 0 5234 5403 14022696 14022527 1.220000e-66 265.0
46 TraesCS3A01G334500 chr6B 91.398 186 14 2 1721 1906 566279829 566279646 2.640000e-63 254.0
47 TraesCS3A01G334500 chr6B 91.489 47 4 0 1987 2033 101732036 101731990 1.330000e-06 65.8
48 TraesCS3A01G334500 chr5B 90.722 194 11 7 1707 1898 275235257 275235445 9.490000e-63 252.0
49 TraesCS3A01G334500 chr5B 97.619 42 1 0 1985 2026 676208466 676208425 7.930000e-09 73.1
50 TraesCS3A01G334500 chr2A 93.529 170 8 3 1735 1902 218122417 218122249 3.410000e-62 250.0
51 TraesCS3A01G334500 chr6D 90.659 182 16 1 1721 1902 390721266 390721086 2.050000e-59 241.0
52 TraesCS3A01G334500 chr6D 90.110 182 16 2 1721 1902 390489584 390489405 9.550000e-58 235.0
53 TraesCS3A01G334500 chr6D 97.778 45 0 1 1983 2026 294085165 294085209 6.130000e-10 76.8
54 TraesCS3A01G334500 chr6A 89.529 191 19 1 1723 1913 256483999 256483810 2.050000e-59 241.0
55 TraesCS3A01G334500 chr4B 87.342 79 5 2 2052 2130 492223529 492223456 1.020000e-12 86.1
56 TraesCS3A01G334500 chr5D 85.897 78 6 2 2052 2129 492288305 492288233 1.700000e-10 78.7
57 TraesCS3A01G334500 chr4D 97.436 39 1 0 1987 2025 48537943 48537905 3.690000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G334500 chr3A 581249781 581255483 5702 False 10532 10532 100.0000 1 5703 1 chr3A.!!$F1 5702
1 TraesCS3A01G334500 chr3D 441123151 441128059 4908 False 3247 4577 90.6880 1 5203 2 chr3D.!!$F2 5202
2 TraesCS3A01G334500 chr3B 578273981 578279076 5095 False 1109 2455 87.7296 1 5192 5 chr3B.!!$F1 5191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 973 0.114364 TCCACTACTCCTGCCACTGA 59.886 55.0 0.00 0.00 0.00 3.41 F
1280 1456 0.037447 GGGGATTCTGATAGCCAGGC 59.963 60.0 1.84 1.84 43.12 4.85 F
1692 1888 0.482446 TGCCAGTGTTCCTTGGGATT 59.518 50.0 0.00 0.00 34.96 3.01 F
1831 2027 1.212616 ATGCTCGCACGAATCTTAGC 58.787 50.0 0.00 0.00 0.00 3.09 F
3039 3302 1.938585 TCGATGTCCTCCAGAACCTT 58.061 50.0 0.00 0.00 0.00 3.50 F
4211 4495 0.762418 TGTGGGTTGGGTAGTCACTG 59.238 55.0 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2289 0.036164 TGCCGCTGATTTGGTACTGT 59.964 50.000 0.00 0.0 0.00 3.55 R
2087 2290 1.164411 TTGCCGCTGATTTGGTACTG 58.836 50.000 0.00 0.0 0.00 2.74 R
3533 3798 1.002087 GGATATCCTAGCACAACCCGG 59.998 57.143 14.97 0.0 0.00 5.73 R
3624 3890 1.962321 TTGCCGTTGAGCCGCCTATA 61.962 55.000 0.00 0.0 0.00 1.31 R
4263 4547 0.035317 TCATTCCTGCACTCAAGCGT 59.965 50.000 0.00 0.0 37.31 5.07 R
5682 6017 0.251474 ACATCTGCCACAGCCACAAT 60.251 50.000 0.00 0.0 38.69 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.073964 GTTCCGAAGTTAGGCCGAAC 58.926 55.000 20.04 20.04 0.00 3.95
41 42 0.948623 TCGATTTGTCCACACAGCGG 60.949 55.000 3.91 0.00 32.71 5.52
67 68 5.333299 TCCGAATCAAAGATAGACGGAAA 57.667 39.130 15.13 1.62 43.61 3.13
69 70 4.270325 CCGAATCAAAGATAGACGGAAACC 59.730 45.833 0.00 0.00 41.09 3.27
86 87 3.737172 CGCTTCACAAAGGCCGGG 61.737 66.667 2.18 0.00 32.79 5.73
87 88 2.597510 GCTTCACAAAGGCCGGGT 60.598 61.111 2.18 0.00 32.79 5.28
88 89 1.302993 GCTTCACAAAGGCCGGGTA 60.303 57.895 2.18 0.00 32.79 3.69
89 90 0.679960 GCTTCACAAAGGCCGGGTAT 60.680 55.000 2.18 0.00 32.79 2.73
90 91 1.094785 CTTCACAAAGGCCGGGTATG 58.905 55.000 2.18 0.00 0.00 2.39
91 92 0.963355 TTCACAAAGGCCGGGTATGC 60.963 55.000 2.18 0.00 0.00 3.14
163 164 2.963371 GTCAAGTCTCGAGCCCGT 59.037 61.111 7.81 0.00 37.05 5.28
164 165 1.153997 GTCAAGTCTCGAGCCCGTC 60.154 63.158 7.81 0.00 37.05 4.79
177 178 4.778415 CCGTCGTGCCTGTCGGAG 62.778 72.222 5.28 0.00 44.86 4.63
210 211 1.390463 GCGTGTAGAAAAGCGAGGAAG 59.610 52.381 0.00 0.00 0.00 3.46
270 277 2.356913 TCGATGCCACCACACACG 60.357 61.111 0.00 0.00 0.00 4.49
298 305 2.028203 TGCGTGACATGGAATCTTCTCA 60.028 45.455 0.00 0.00 0.00 3.27
308 315 3.186119 GGAATCTTCTCAGCTCTTGTCG 58.814 50.000 0.00 0.00 0.00 4.35
311 318 1.615883 TCTTCTCAGCTCTTGTCGCTT 59.384 47.619 0.00 0.00 35.07 4.68
312 319 2.036475 TCTTCTCAGCTCTTGTCGCTTT 59.964 45.455 0.00 0.00 35.07 3.51
313 320 2.071688 TCTCAGCTCTTGTCGCTTTC 57.928 50.000 0.00 0.00 35.07 2.62
314 321 1.074752 CTCAGCTCTTGTCGCTTTCC 58.925 55.000 0.00 0.00 35.07 3.13
315 322 0.681733 TCAGCTCTTGTCGCTTTCCT 59.318 50.000 0.00 0.00 35.07 3.36
321 338 3.057946 GCTCTTGTCGCTTTCCTTTTCAT 60.058 43.478 0.00 0.00 0.00 2.57
322 339 4.154195 GCTCTTGTCGCTTTCCTTTTCATA 59.846 41.667 0.00 0.00 0.00 2.15
344 361 0.956633 AGTGGAAATGCAGCAGTGTG 59.043 50.000 0.00 0.00 0.00 3.82
349 468 3.243367 TGGAAATGCAGCAGTGTGTAAAC 60.243 43.478 0.00 0.00 0.00 2.01
360 479 4.554723 GCAGTGTGTAAACTAGTGCAAAGG 60.555 45.833 0.00 0.00 39.81 3.11
386 505 8.593945 AATTGGAGCCAAGAAAAAGTATGATA 57.406 30.769 8.09 0.00 39.47 2.15
404 523 9.193133 AGTATGATACGCATGTAGTAAAATGAC 57.807 33.333 7.15 3.87 37.87 3.06
413 532 7.307160 CGCATGTAGTAAAATGACCGAATATGT 60.307 37.037 0.00 0.00 0.00 2.29
414 533 8.342634 GCATGTAGTAAAATGACCGAATATGTT 58.657 33.333 0.00 0.00 0.00 2.71
417 536 9.661563 TGTAGTAAAATGACCGAATATGTTTCT 57.338 29.630 0.00 0.00 0.00 2.52
441 560 8.740906 TCTACTTTCTACATCTTCAACCTACAG 58.259 37.037 0.00 0.00 0.00 2.74
451 570 5.844004 TCTTCAACCTACAGAGACAAAGAC 58.156 41.667 0.00 0.00 0.00 3.01
476 595 3.495193 GAAGGGGATTTTAAAACGACGC 58.505 45.455 1.97 5.24 0.00 5.19
481 600 3.934579 GGGATTTTAAAACGACGCTAGGA 59.065 43.478 1.97 0.00 0.00 2.94
494 613 3.609853 ACGCTAGGATGAAATGAAAGCA 58.390 40.909 0.00 0.00 0.00 3.91
497 616 3.243334 GCTAGGATGAAATGAAAGCAGCC 60.243 47.826 0.00 0.00 38.33 4.85
515 634 1.740296 CGAGGGCTAACACAACCGG 60.740 63.158 0.00 0.00 0.00 5.28
546 665 0.172578 TTAGCACATCTCCGTCACCG 59.827 55.000 0.00 0.00 0.00 4.94
549 668 1.807165 CACATCTCCGTCACCGCAG 60.807 63.158 0.00 0.00 0.00 5.18
580 699 0.458543 TGGCTTAGCGAAGAAGCTCG 60.459 55.000 11.09 0.00 45.67 5.03
603 722 1.299648 CGGCCAATCAGGTTCAGGA 59.700 57.895 2.24 0.00 40.61 3.86
604 723 1.026718 CGGCCAATCAGGTTCAGGAC 61.027 60.000 2.24 0.00 40.61 3.85
605 724 0.329596 GGCCAATCAGGTTCAGGACT 59.670 55.000 0.00 0.00 40.61 3.85
606 725 1.272147 GGCCAATCAGGTTCAGGACTT 60.272 52.381 0.00 0.00 40.61 3.01
607 726 2.087646 GCCAATCAGGTTCAGGACTTC 58.912 52.381 0.00 0.00 40.61 3.01
608 727 2.553028 GCCAATCAGGTTCAGGACTTCA 60.553 50.000 0.00 0.00 40.61 3.02
609 728 3.341823 CCAATCAGGTTCAGGACTTCAG 58.658 50.000 0.00 0.00 0.00 3.02
610 729 3.341823 CAATCAGGTTCAGGACTTCAGG 58.658 50.000 0.00 0.00 0.00 3.86
611 730 0.687354 TCAGGTTCAGGACTTCAGGC 59.313 55.000 0.00 0.00 0.00 4.85
612 731 0.671781 CAGGTTCAGGACTTCAGGCG 60.672 60.000 0.00 0.00 0.00 5.52
667 786 5.182380 CACCTATAGCAGCCTAGAAGAGTAC 59.818 48.000 0.00 0.00 0.00 2.73
722 858 1.274728 CAGCCTAGCACAAGACTGACT 59.725 52.381 0.00 0.00 0.00 3.41
723 859 1.274728 AGCCTAGCACAAGACTGACTG 59.725 52.381 0.00 0.00 0.00 3.51
823 965 2.760385 GGCCGCTCCACTACTCCT 60.760 66.667 0.00 0.00 34.01 3.69
824 966 2.496817 GCCGCTCCACTACTCCTG 59.503 66.667 0.00 0.00 0.00 3.86
827 969 2.351244 CGCTCCACTACTCCTGCCA 61.351 63.158 0.00 0.00 0.00 4.92
828 970 1.219393 GCTCCACTACTCCTGCCAC 59.781 63.158 0.00 0.00 0.00 5.01
829 971 1.261238 GCTCCACTACTCCTGCCACT 61.261 60.000 0.00 0.00 0.00 4.00
830 972 0.534412 CTCCACTACTCCTGCCACTG 59.466 60.000 0.00 0.00 0.00 3.66
831 973 0.114364 TCCACTACTCCTGCCACTGA 59.886 55.000 0.00 0.00 0.00 3.41
832 974 0.247736 CCACTACTCCTGCCACTGAC 59.752 60.000 0.00 0.00 0.00 3.51
920 1064 0.671472 CAGACACATCGCTGCTTCCA 60.671 55.000 0.00 0.00 0.00 3.53
924 1068 0.463295 CACATCGCTGCTTCCATCCT 60.463 55.000 0.00 0.00 0.00 3.24
927 1071 0.835941 ATCGCTGCTTCCATCCTCTT 59.164 50.000 0.00 0.00 0.00 2.85
1250 1410 1.064952 CGCCCTTTCGTTTCTGTTTGT 59.935 47.619 0.00 0.00 0.00 2.83
1253 1413 3.065648 GCCCTTTCGTTTCTGTTTGTGTA 59.934 43.478 0.00 0.00 0.00 2.90
1256 1432 5.212194 CCTTTCGTTTCTGTTTGTGTATGG 58.788 41.667 0.00 0.00 0.00 2.74
1269 1445 2.065799 GTGTATGGGGATGGGGATTCT 58.934 52.381 0.00 0.00 0.00 2.40
1274 1450 2.636005 TGGGGATGGGGATTCTGATAG 58.364 52.381 0.00 0.00 0.00 2.08
1275 1451 1.283321 GGGGATGGGGATTCTGATAGC 59.717 57.143 0.00 0.00 0.00 2.97
1276 1452 1.283321 GGGATGGGGATTCTGATAGCC 59.717 57.143 0.00 0.00 0.00 3.93
1277 1453 1.988107 GGATGGGGATTCTGATAGCCA 59.012 52.381 0.00 0.00 0.00 4.75
1278 1454 2.026449 GGATGGGGATTCTGATAGCCAG 60.026 54.545 0.00 0.00 44.27 4.85
1279 1455 1.438469 TGGGGATTCTGATAGCCAGG 58.562 55.000 0.00 0.00 43.12 4.45
1280 1456 0.037447 GGGGATTCTGATAGCCAGGC 59.963 60.000 1.84 1.84 43.12 4.85
1281 1457 0.037447 GGGATTCTGATAGCCAGGCC 59.963 60.000 8.22 0.00 43.12 5.19
1356 1532 5.223449 TCCTAGCTATAATTTGTTCCCGG 57.777 43.478 0.00 0.00 0.00 5.73
1377 1553 2.417515 GCAGGACAGACTAGTGTTAGGC 60.418 54.545 0.00 0.00 34.92 3.93
1408 1595 5.006746 GCGTAATTGAGGATTTAGTCTGGTG 59.993 44.000 0.00 0.00 0.00 4.17
1469 1656 6.662616 CGTGAATCAAAACAAGAGTCTGATT 58.337 36.000 0.00 0.00 38.97 2.57
1549 1739 2.623416 GGTTCAAGTTTCCCAAGACTGG 59.377 50.000 0.00 0.00 43.10 4.00
1572 1766 6.328148 TGGAGAAGTTAAACCCTTTAGACTGA 59.672 38.462 0.00 0.00 0.00 3.41
1573 1767 7.147444 TGGAGAAGTTAAACCCTTTAGACTGAA 60.147 37.037 0.00 0.00 0.00 3.02
1638 1834 0.811281 GCTGGGATAGTTGGTGTTGC 59.189 55.000 0.00 0.00 0.00 4.17
1692 1888 0.482446 TGCCAGTGTTCCTTGGGATT 59.518 50.000 0.00 0.00 34.96 3.01
1719 1915 6.576185 GGATGAAACATTGTATGCCTGAATT 58.424 36.000 0.00 0.00 0.00 2.17
1720 1916 7.043565 GGATGAAACATTGTATGCCTGAATTT 58.956 34.615 0.00 0.00 0.00 1.82
1721 1917 7.223387 GGATGAAACATTGTATGCCTGAATTTC 59.777 37.037 0.00 0.00 0.00 2.17
1722 1918 7.230849 TGAAACATTGTATGCCTGAATTTCT 57.769 32.000 0.00 0.00 0.00 2.52
1723 1919 7.092079 TGAAACATTGTATGCCTGAATTTCTG 58.908 34.615 0.00 0.00 0.00 3.02
1724 1920 6.594788 AACATTGTATGCCTGAATTTCTGT 57.405 33.333 0.00 0.00 0.00 3.41
1725 1921 6.199937 ACATTGTATGCCTGAATTTCTGTC 57.800 37.500 0.00 0.00 0.00 3.51
1726 1922 5.948162 ACATTGTATGCCTGAATTTCTGTCT 59.052 36.000 0.00 0.00 0.00 3.41
1727 1923 7.112122 ACATTGTATGCCTGAATTTCTGTCTA 58.888 34.615 0.00 0.00 0.00 2.59
1728 1924 7.281774 ACATTGTATGCCTGAATTTCTGTCTAG 59.718 37.037 0.00 0.00 0.00 2.43
1729 1925 5.674525 TGTATGCCTGAATTTCTGTCTAGG 58.325 41.667 0.00 0.00 0.00 3.02
1730 1926 4.851639 ATGCCTGAATTTCTGTCTAGGT 57.148 40.909 0.00 0.00 0.00 3.08
1731 1927 3.942829 TGCCTGAATTTCTGTCTAGGTG 58.057 45.455 0.00 0.00 0.00 4.00
1732 1928 3.327757 TGCCTGAATTTCTGTCTAGGTGT 59.672 43.478 0.00 0.00 0.00 4.16
1733 1929 3.686726 GCCTGAATTTCTGTCTAGGTGTG 59.313 47.826 0.00 0.00 0.00 3.82
1734 1930 3.686726 CCTGAATTTCTGTCTAGGTGTGC 59.313 47.826 0.00 0.00 0.00 4.57
1735 1931 4.318332 CTGAATTTCTGTCTAGGTGTGCA 58.682 43.478 0.00 0.00 0.00 4.57
1736 1932 4.910195 TGAATTTCTGTCTAGGTGTGCAT 58.090 39.130 0.00 0.00 0.00 3.96
1737 1933 4.937620 TGAATTTCTGTCTAGGTGTGCATC 59.062 41.667 0.00 0.00 0.00 3.91
1738 1934 4.833478 ATTTCTGTCTAGGTGTGCATCT 57.167 40.909 0.00 0.00 0.00 2.90
1739 1935 5.939764 ATTTCTGTCTAGGTGTGCATCTA 57.060 39.130 0.00 0.00 0.00 1.98
1740 1936 4.720649 TTCTGTCTAGGTGTGCATCTAC 57.279 45.455 0.00 0.00 0.00 2.59
1741 1937 3.697166 TCTGTCTAGGTGTGCATCTACA 58.303 45.455 0.00 0.00 0.00 2.74
1742 1938 4.281657 TCTGTCTAGGTGTGCATCTACAT 58.718 43.478 0.00 0.00 32.43 2.29
1743 1939 4.098501 TCTGTCTAGGTGTGCATCTACATG 59.901 45.833 0.00 0.00 32.43 3.21
1744 1940 3.769300 TGTCTAGGTGTGCATCTACATGT 59.231 43.478 2.69 2.69 32.43 3.21
1745 1941 4.115516 GTCTAGGTGTGCATCTACATGTG 58.884 47.826 9.11 0.00 32.43 3.21
1746 1942 1.742761 AGGTGTGCATCTACATGTGC 58.257 50.000 9.11 3.58 41.61 4.57
1747 1943 1.280133 AGGTGTGCATCTACATGTGCT 59.720 47.619 9.11 0.00 41.78 4.40
1748 1944 1.667724 GGTGTGCATCTACATGTGCTC 59.332 52.381 9.11 4.91 41.78 4.26
1749 1945 2.625737 GTGTGCATCTACATGTGCTCT 58.374 47.619 9.11 0.00 41.78 4.09
1750 1946 3.430790 GGTGTGCATCTACATGTGCTCTA 60.431 47.826 9.11 0.00 41.78 2.43
1751 1947 3.801050 GTGTGCATCTACATGTGCTCTAG 59.199 47.826 9.11 0.00 41.78 2.43
1752 1948 3.448660 TGTGCATCTACATGTGCTCTAGT 59.551 43.478 9.11 0.00 41.78 2.57
1753 1949 4.081476 TGTGCATCTACATGTGCTCTAGTT 60.081 41.667 9.11 0.00 41.78 2.24
1754 1950 5.127031 TGTGCATCTACATGTGCTCTAGTTA 59.873 40.000 9.11 0.00 41.78 2.24
1755 1951 6.183360 TGTGCATCTACATGTGCTCTAGTTAT 60.183 38.462 9.11 0.00 41.78 1.89
1756 1952 6.703607 GTGCATCTACATGTGCTCTAGTTATT 59.296 38.462 9.11 0.00 41.78 1.40
1757 1953 6.703165 TGCATCTACATGTGCTCTAGTTATTG 59.297 38.462 9.11 0.00 41.78 1.90
1758 1954 6.347240 GCATCTACATGTGCTCTAGTTATTGC 60.347 42.308 9.11 3.37 38.30 3.56
1759 1955 6.220726 TCTACATGTGCTCTAGTTATTGCA 57.779 37.500 9.11 0.00 0.00 4.08
1768 1964 6.878317 TGCTCTAGTTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
1769 1965 6.758416 TGCTCTAGTTATTGCACATCTAAGTG 59.242 38.462 0.00 0.00 42.37 3.16
1770 1966 6.980978 GCTCTAGTTATTGCACATCTAAGTGA 59.019 38.462 0.00 0.00 42.05 3.41
1771 1967 7.043059 GCTCTAGTTATTGCACATCTAAGTGAC 60.043 40.741 0.00 0.00 42.05 3.67
1772 1968 8.067751 TCTAGTTATTGCACATCTAAGTGACT 57.932 34.615 0.00 0.00 42.05 3.41
1773 1969 8.191446 TCTAGTTATTGCACATCTAAGTGACTC 58.809 37.037 0.00 0.00 42.05 3.36
1774 1970 6.701340 AGTTATTGCACATCTAAGTGACTCA 58.299 36.000 0.00 0.00 42.05 3.41
1775 1971 7.161404 AGTTATTGCACATCTAAGTGACTCAA 58.839 34.615 0.00 0.00 42.05 3.02
1776 1972 7.826252 AGTTATTGCACATCTAAGTGACTCAAT 59.174 33.333 0.00 0.00 42.05 2.57
1777 1973 6.674694 ATTGCACATCTAAGTGACTCAATC 57.325 37.500 0.00 0.00 42.05 2.67
1778 1974 5.151297 TGCACATCTAAGTGACTCAATCA 57.849 39.130 0.00 0.00 42.05 2.57
1779 1975 5.550290 TGCACATCTAAGTGACTCAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
1780 1976 5.997129 TGCACATCTAAGTGACTCAATCAAA 59.003 36.000 0.00 0.00 42.05 2.69
1781 1977 6.073058 TGCACATCTAAGTGACTCAATCAAAC 60.073 38.462 0.00 0.00 42.05 2.93
1782 1978 6.148480 GCACATCTAAGTGACTCAATCAAACT 59.852 38.462 0.00 0.00 42.05 2.66
1783 1979 7.331934 GCACATCTAAGTGACTCAATCAAACTA 59.668 37.037 0.00 0.00 42.05 2.24
1784 1980 8.867935 CACATCTAAGTGACTCAATCAAACTAG 58.132 37.037 0.00 0.00 42.05 2.57
1785 1981 8.807118 ACATCTAAGTGACTCAATCAAACTAGA 58.193 33.333 0.00 0.00 39.72 2.43
1786 1982 9.645059 CATCTAAGTGACTCAATCAAACTAGAA 57.355 33.333 0.00 0.00 39.72 2.10
1788 1984 9.698309 TCTAAGTGACTCAATCAAACTAGAAAG 57.302 33.333 0.00 0.00 39.72 2.62
1789 1985 9.698309 CTAAGTGACTCAATCAAACTAGAAAGA 57.302 33.333 0.00 0.00 39.72 2.52
1790 1986 8.964476 AAGTGACTCAATCAAACTAGAAAGAA 57.036 30.769 0.00 0.00 39.72 2.52
1791 1987 8.964476 AGTGACTCAATCAAACTAGAAAGAAA 57.036 30.769 0.00 0.00 39.72 2.52
1792 1988 9.396022 AGTGACTCAATCAAACTAGAAAGAAAA 57.604 29.630 0.00 0.00 39.72 2.29
1793 1989 9.657121 GTGACTCAATCAAACTAGAAAGAAAAG 57.343 33.333 0.00 0.00 39.72 2.27
1794 1990 8.840321 TGACTCAATCAAACTAGAAAGAAAAGG 58.160 33.333 0.00 0.00 33.02 3.11
1795 1991 8.980481 ACTCAATCAAACTAGAAAGAAAAGGA 57.020 30.769 0.00 0.00 0.00 3.36
1796 1992 9.408648 ACTCAATCAAACTAGAAAGAAAAGGAA 57.591 29.630 0.00 0.00 0.00 3.36
1820 2016 7.475771 AAAAATGTAAAAGAAAATGCTCGCA 57.524 28.000 0.00 0.00 0.00 5.10
1821 2017 6.452244 AAATGTAAAAGAAAATGCTCGCAC 57.548 33.333 0.00 0.00 0.00 5.34
1822 2018 3.550561 TGTAAAAGAAAATGCTCGCACG 58.449 40.909 0.00 0.00 0.00 5.34
1823 2019 3.248841 TGTAAAAGAAAATGCTCGCACGA 59.751 39.130 0.00 0.00 0.00 4.35
1824 2020 3.347958 AAAAGAAAATGCTCGCACGAA 57.652 38.095 0.00 0.00 0.00 3.85
1825 2021 3.559238 AAAGAAAATGCTCGCACGAAT 57.441 38.095 0.00 0.00 0.00 3.34
1826 2022 2.813779 AGAAAATGCTCGCACGAATC 57.186 45.000 0.00 0.00 0.00 2.52
1827 2023 2.350522 AGAAAATGCTCGCACGAATCT 58.649 42.857 0.00 0.00 0.00 2.40
1828 2024 2.744202 AGAAAATGCTCGCACGAATCTT 59.256 40.909 0.00 0.00 0.00 2.40
1829 2025 3.932710 AGAAAATGCTCGCACGAATCTTA 59.067 39.130 0.00 0.00 0.00 2.10
1830 2026 3.933155 AAATGCTCGCACGAATCTTAG 57.067 42.857 0.00 0.00 0.00 2.18
1831 2027 1.212616 ATGCTCGCACGAATCTTAGC 58.787 50.000 0.00 0.00 0.00 3.09
1837 2033 3.628053 CGCACGAATCTTAGCGTAAAA 57.372 42.857 0.00 0.00 44.67 1.52
1838 2034 4.178156 CGCACGAATCTTAGCGTAAAAT 57.822 40.909 0.00 0.00 44.67 1.82
1839 2035 4.194121 CGCACGAATCTTAGCGTAAAATC 58.806 43.478 0.00 0.00 44.67 2.17
1840 2036 4.259650 CGCACGAATCTTAGCGTAAAATCA 60.260 41.667 0.00 0.00 44.67 2.57
1841 2037 5.556470 GCACGAATCTTAGCGTAAAATCAA 58.444 37.500 0.00 0.00 38.92 2.57
1842 2038 6.192360 GCACGAATCTTAGCGTAAAATCAAT 58.808 36.000 0.00 0.00 38.92 2.57
1843 2039 6.139169 GCACGAATCTTAGCGTAAAATCAATG 59.861 38.462 0.00 0.00 38.92 2.82
1844 2040 7.398746 CACGAATCTTAGCGTAAAATCAATGA 58.601 34.615 0.00 0.00 38.92 2.57
1845 2041 7.370836 CACGAATCTTAGCGTAAAATCAATGAC 59.629 37.037 0.00 0.00 38.92 3.06
1846 2042 7.064134 ACGAATCTTAGCGTAAAATCAATGACA 59.936 33.333 0.00 0.00 39.21 3.58
1847 2043 8.064222 CGAATCTTAGCGTAAAATCAATGACAT 58.936 33.333 0.00 0.00 0.00 3.06
1850 2046 8.365399 TCTTAGCGTAAAATCAATGACATAGG 57.635 34.615 0.00 0.00 0.00 2.57
1851 2047 8.201464 TCTTAGCGTAAAATCAATGACATAGGA 58.799 33.333 0.00 0.00 0.00 2.94
1852 2048 6.604735 AGCGTAAAATCAATGACATAGGAC 57.395 37.500 0.00 0.00 0.00 3.85
1853 2049 6.349300 AGCGTAAAATCAATGACATAGGACT 58.651 36.000 0.00 0.00 0.00 3.85
1854 2050 6.823689 AGCGTAAAATCAATGACATAGGACTT 59.176 34.615 0.00 0.00 0.00 3.01
1855 2051 7.985184 AGCGTAAAATCAATGACATAGGACTTA 59.015 33.333 0.00 0.00 0.00 2.24
1856 2052 8.276325 GCGTAAAATCAATGACATAGGACTTAG 58.724 37.037 0.00 0.00 0.00 2.18
1857 2053 9.529325 CGTAAAATCAATGACATAGGACTTAGA 57.471 33.333 0.00 0.00 0.00 2.10
1860 2056 9.911788 AAAATCAATGACATAGGACTTAGATGT 57.088 29.630 0.00 0.00 36.52 3.06
1861 2057 8.899427 AATCAATGACATAGGACTTAGATGTG 57.101 34.615 0.00 0.00 33.99 3.21
1862 2058 6.283694 TCAATGACATAGGACTTAGATGTGC 58.716 40.000 0.00 0.00 33.99 4.57
1863 2059 5.876651 ATGACATAGGACTTAGATGTGCA 57.123 39.130 0.00 0.00 33.99 4.57
1864 2060 5.675684 TGACATAGGACTTAGATGTGCAA 57.324 39.130 0.00 0.00 33.99 4.08
1865 2061 6.239217 TGACATAGGACTTAGATGTGCAAT 57.761 37.500 0.00 0.00 33.99 3.56
1866 2062 7.360113 TGACATAGGACTTAGATGTGCAATA 57.640 36.000 0.00 0.00 33.99 1.90
1867 2063 7.210174 TGACATAGGACTTAGATGTGCAATAC 58.790 38.462 0.00 0.00 33.99 1.89
1868 2064 7.069950 TGACATAGGACTTAGATGTGCAATACT 59.930 37.037 0.00 0.00 33.99 2.12
1869 2065 7.796054 ACATAGGACTTAGATGTGCAATACTT 58.204 34.615 0.00 0.00 32.62 2.24
1870 2066 8.924303 ACATAGGACTTAGATGTGCAATACTTA 58.076 33.333 0.00 0.00 32.62 2.24
1871 2067 9.416794 CATAGGACTTAGATGTGCAATACTTAG 57.583 37.037 0.00 0.00 0.00 2.18
1872 2068 7.661536 AGGACTTAGATGTGCAATACTTAGA 57.338 36.000 0.00 0.00 0.00 2.10
1873 2069 7.721402 AGGACTTAGATGTGCAATACTTAGAG 58.279 38.462 0.00 0.00 0.00 2.43
1874 2070 6.422400 GGACTTAGATGTGCAATACTTAGAGC 59.578 42.308 0.00 0.00 0.00 4.09
1875 2071 6.878317 ACTTAGATGTGCAATACTTAGAGCA 58.122 36.000 0.00 0.00 34.10 4.26
1883 2079 6.715347 TGCAATACTTAGAGCACATCTAGA 57.285 37.500 0.00 0.00 41.57 2.43
1884 2080 7.295322 TGCAATACTTAGAGCACATCTAGAT 57.705 36.000 0.00 0.00 41.57 1.98
1885 2081 7.150640 TGCAATACTTAGAGCACATCTAGATG 58.849 38.462 27.63 27.63 41.57 2.90
2029 2232 9.772973 ATTAATTGTCGCTGATTTAGTACCATA 57.227 29.630 0.00 0.00 0.00 2.74
2030 2233 9.772973 TTAATTGTCGCTGATTTAGTACCATAT 57.227 29.630 0.00 0.00 0.00 1.78
2031 2234 8.677148 AATTGTCGCTGATTTAGTACCATATT 57.323 30.769 0.00 0.00 0.00 1.28
2033 2236 9.772973 ATTGTCGCTGATTTAGTACCATATTAA 57.227 29.630 0.00 0.00 0.00 1.40
2034 2237 9.772973 TTGTCGCTGATTTAGTACCATATTAAT 57.227 29.630 0.00 0.00 0.00 1.40
2035 2238 9.772973 TGTCGCTGATTTAGTACCATATTAATT 57.227 29.630 0.00 0.00 0.00 1.40
2084 2287 6.223138 TGTCGCTGATTTAGTACAAAGTTG 57.777 37.500 0.00 0.00 0.00 3.16
2085 2288 5.756347 TGTCGCTGATTTAGTACAAAGTTGT 59.244 36.000 1.75 1.75 44.86 3.32
2086 2289 6.924612 TGTCGCTGATTTAGTACAAAGTTGTA 59.075 34.615 0.00 0.00 42.35 2.41
2109 2312 2.164219 AGTACCAAATCAGCGGCAATTG 59.836 45.455 1.45 0.00 0.00 2.32
2123 2326 3.617288 CGGCAATTGATATGGATCGGAGA 60.617 47.826 10.34 0.00 45.75 3.71
2162 2367 6.918892 TTGCTGTATATATGAAAAGTGCGT 57.081 33.333 0.00 0.00 0.00 5.24
2380 2585 5.047847 CCTGTAAGTTCTTCTTTCACGTGA 58.952 41.667 15.76 15.76 37.56 4.35
2711 2972 7.262048 TCCAGGTGTAAATTTGTTTGAACTTC 58.738 34.615 0.00 0.00 0.00 3.01
2768 3029 9.623000 AGTTTAAATCCTATGTATTAAGCCGTT 57.377 29.630 0.00 0.00 0.00 4.44
2854 3115 2.566913 TGTAGCGGAACTTGAAAGCAA 58.433 42.857 0.00 0.00 0.00 3.91
2895 3157 6.787170 ACATGGATTAACCTGCTATGATGAT 58.213 36.000 0.00 0.00 39.86 2.45
2901 3163 9.160496 GGATTAACCTGCTATGATGATAAAGAG 57.840 37.037 0.00 0.00 35.41 2.85
3039 3302 1.938585 TCGATGTCCTCCAGAACCTT 58.061 50.000 0.00 0.00 0.00 3.50
3048 3311 3.006537 TCCTCCAGAACCTTTTCAGTACG 59.993 47.826 0.00 0.00 33.72 3.67
3099 3362 5.633830 ATCCTATTTTCAACTGCTGTGTG 57.366 39.130 0.00 0.00 0.00 3.82
3104 3367 2.363306 TTCAACTGCTGTGTGGGATT 57.637 45.000 0.00 0.00 0.00 3.01
3139 3402 6.372659 TGTTGTTGTTGGTGCATTTTGTTTAT 59.627 30.769 0.00 0.00 0.00 1.40
3189 3452 5.628797 TGATGTTTAGGCCTGATGTATCA 57.371 39.130 17.99 15.34 35.16 2.15
3240 3504 8.515695 ACTGATTATTCATCTCAATGCAAAGA 57.484 30.769 0.00 0.00 32.34 2.52
3366 3630 6.375736 TGGACTTGTACAAGAACAATGTTTCA 59.624 34.615 36.14 16.90 40.79 2.69
3430 3695 7.592938 TGTATTCTTGTAAGTTTCATGCCTTG 58.407 34.615 0.00 0.00 0.00 3.61
3501 3766 4.855388 GCGGATTTATTGCTGATTATGCTG 59.145 41.667 0.00 0.00 0.00 4.41
3533 3798 7.088589 ACATTCTGTATTGTTCTAATGGTGC 57.911 36.000 0.00 0.00 0.00 5.01
3557 3822 3.433173 GGGTTGTGCTAGGATATCCGTTT 60.433 47.826 16.21 1.54 42.08 3.60
3624 3890 4.036971 TGCTTAACATACGGTTGTGCTTTT 59.963 37.500 0.00 0.00 40.73 2.27
3716 3982 7.745015 TCAAAGTTGTGTAAGTACAGTTTCAC 58.255 34.615 0.00 0.00 36.78 3.18
3725 3991 5.438761 AAGTACAGTTTCACTTCCAATGC 57.561 39.130 0.00 0.00 28.88 3.56
3756 4022 1.244019 GGCTCCACGTGAATTTGCCT 61.244 55.000 19.30 0.00 36.32 4.75
3791 4057 7.517614 TTGGCTTCATTGTTTTACAGTGATA 57.482 32.000 0.00 0.00 42.97 2.15
4005 4271 7.148407 GGATGTGTGTCTCTTAACCAATACTTG 60.148 40.741 0.00 0.00 0.00 3.16
4007 4273 6.481976 TGTGTGTCTCTTAACCAATACTTGTG 59.518 38.462 0.00 0.00 0.00 3.33
4010 4280 7.771361 TGTGTCTCTTAACCAATACTTGTGAAA 59.229 33.333 0.00 0.00 0.00 2.69
4084 4360 3.663464 ATCACATGCATTTTCTCGTCG 57.337 42.857 0.00 0.00 0.00 5.12
4156 4432 5.938438 TTGCAAAATTAATTTGGCTGACC 57.062 34.783 30.93 10.96 46.93 4.02
4178 4454 3.431207 CGTTTCCGTGATAAGGTGGGTAT 60.431 47.826 0.00 0.00 0.00 2.73
4180 4456 4.847990 TTCCGTGATAAGGTGGGTATTT 57.152 40.909 0.00 0.00 0.00 1.40
4181 4457 4.411256 TCCGTGATAAGGTGGGTATTTC 57.589 45.455 0.00 0.00 0.00 2.17
4182 4458 4.035112 TCCGTGATAAGGTGGGTATTTCT 58.965 43.478 0.00 0.00 0.00 2.52
4185 4469 5.296035 CCGTGATAAGGTGGGTATTTCTTTC 59.704 44.000 0.00 0.00 0.00 2.62
4211 4495 0.762418 TGTGGGTTGGGTAGTCACTG 59.238 55.000 0.00 0.00 0.00 3.66
4247 4531 8.605947 TGGAAGGGTATAATCTTATCATTCTGG 58.394 37.037 0.00 0.00 0.00 3.86
4263 4547 1.640149 TCTGGAAGGGCATCATCCAAA 59.360 47.619 5.10 0.00 42.41 3.28
4264 4548 1.753073 CTGGAAGGGCATCATCCAAAC 59.247 52.381 5.10 0.00 42.41 2.93
4266 4550 0.101219 GAAGGGCATCATCCAAACGC 59.899 55.000 0.00 0.00 0.00 4.84
4267 4551 0.323725 AAGGGCATCATCCAAACGCT 60.324 50.000 0.00 0.00 0.00 5.07
4357 4641 2.250924 CCCATTCCAAGCACTTCCTTT 58.749 47.619 0.00 0.00 0.00 3.11
4395 4684 6.639632 TTCTTTTTCATCCCTTTCTGTCAG 57.360 37.500 0.00 0.00 0.00 3.51
4478 4768 1.602377 GTGGGAACATAATGCCGTAGC 59.398 52.381 0.00 0.00 46.14 3.58
4485 4775 2.288030 ACATAATGCCGTAGCCTCGTAC 60.288 50.000 0.00 0.00 38.69 3.67
4505 4832 6.592607 TCGTACTCTCAACCATTATGTTTTCC 59.407 38.462 0.00 0.00 0.00 3.13
4509 4836 7.234355 ACTCTCAACCATTATGTTTTCCTTCT 58.766 34.615 0.00 0.00 0.00 2.85
4575 4906 4.632327 TCATGTTCTCACCACCATTACA 57.368 40.909 0.00 0.00 0.00 2.41
4840 5173 1.091197 TAGCGCTGTCATGCCATGTG 61.091 55.000 22.90 0.00 0.00 3.21
4841 5174 2.693762 GCGCTGTCATGCCATGTGT 61.694 57.895 4.31 0.00 0.00 3.72
4842 5175 1.426621 CGCTGTCATGCCATGTGTC 59.573 57.895 4.31 0.00 0.00 3.67
4843 5176 1.300266 CGCTGTCATGCCATGTGTCA 61.300 55.000 4.31 2.75 0.00 3.58
4844 5177 1.100510 GCTGTCATGCCATGTGTCAT 58.899 50.000 4.31 0.00 0.00 3.06
4845 5178 1.202256 GCTGTCATGCCATGTGTCATG 60.202 52.381 4.31 11.42 40.92 3.07
4846 5179 2.089201 CTGTCATGCCATGTGTCATGT 58.911 47.619 4.31 0.00 40.54 3.21
4916 5249 0.035317 ACGATGCTTTCTGCCTGTGA 59.965 50.000 0.00 0.00 42.00 3.58
4918 5251 1.741706 CGATGCTTTCTGCCTGTGAAT 59.258 47.619 0.00 0.00 42.00 2.57
4946 5280 6.683974 AACATAAGATTGCCTATGTGTCAC 57.316 37.500 0.00 0.00 33.89 3.67
4987 5321 7.671398 TGTCATCTACTCATCTCTATTATGGCA 59.329 37.037 0.00 0.00 0.00 4.92
4988 5322 8.526978 GTCATCTACTCATCTCTATTATGGCAA 58.473 37.037 0.00 0.00 0.00 4.52
4989 5323 9.264653 TCATCTACTCATCTCTATTATGGCAAT 57.735 33.333 0.00 0.00 0.00 3.56
4990 5324 9.315525 CATCTACTCATCTCTATTATGGCAATG 57.684 37.037 0.00 0.00 0.00 2.82
4991 5325 7.845037 TCTACTCATCTCTATTATGGCAATGG 58.155 38.462 0.00 0.00 0.00 3.16
4992 5326 5.251764 ACTCATCTCTATTATGGCAATGGC 58.748 41.667 0.00 0.00 40.13 4.40
5080 5415 6.155221 GGATAACTGATGTAGGGCTGATATGA 59.845 42.308 0.00 0.00 0.00 2.15
5103 5438 0.764271 TGGTGTGAGATGTCCAAGCA 59.236 50.000 0.00 0.00 0.00 3.91
5151 5486 8.840200 ACCTCTTTTCTGACCTGAAGTATATA 57.160 34.615 0.00 0.00 0.00 0.86
5152 5487 9.440761 ACCTCTTTTCTGACCTGAAGTATATAT 57.559 33.333 0.00 0.00 0.00 0.86
5153 5488 9.921637 CCTCTTTTCTGACCTGAAGTATATATC 57.078 37.037 0.00 0.00 0.00 1.63
5186 5521 2.772077 TTCTTATAGCGGTGCCAACA 57.228 45.000 0.00 0.00 0.00 3.33
5190 5525 4.124238 TCTTATAGCGGTGCCAACATAAC 58.876 43.478 0.00 0.00 0.00 1.89
5203 5538 3.995705 CCAACATAACATGCCAACCAAAG 59.004 43.478 0.00 0.00 0.00 2.77
5204 5539 3.959535 ACATAACATGCCAACCAAAGG 57.040 42.857 0.00 0.00 0.00 3.11
5205 5540 2.566724 ACATAACATGCCAACCAAAGGG 59.433 45.455 0.00 0.00 41.29 3.95
5206 5541 2.685106 TAACATGCCAACCAAAGGGA 57.315 45.000 0.00 0.00 38.05 4.20
5207 5542 1.799933 AACATGCCAACCAAAGGGAA 58.200 45.000 0.00 0.00 38.05 3.97
5208 5543 1.799933 ACATGCCAACCAAAGGGAAA 58.200 45.000 0.00 0.00 38.05 3.13
5209 5544 1.693606 ACATGCCAACCAAAGGGAAAG 59.306 47.619 0.00 0.00 38.05 2.62
5210 5545 1.693606 CATGCCAACCAAAGGGAAAGT 59.306 47.619 0.00 0.00 38.05 2.66
5211 5546 2.757894 TGCCAACCAAAGGGAAAGTA 57.242 45.000 0.00 0.00 38.05 2.24
5212 5547 3.033659 TGCCAACCAAAGGGAAAGTAA 57.966 42.857 0.00 0.00 38.05 2.24
5213 5548 2.962421 TGCCAACCAAAGGGAAAGTAAG 59.038 45.455 0.00 0.00 38.05 2.34
5214 5549 2.963101 GCCAACCAAAGGGAAAGTAAGT 59.037 45.455 0.00 0.00 38.05 2.24
5215 5550 3.243737 GCCAACCAAAGGGAAAGTAAGTG 60.244 47.826 0.00 0.00 38.05 3.16
5216 5551 4.211920 CCAACCAAAGGGAAAGTAAGTGA 58.788 43.478 0.00 0.00 38.05 3.41
5217 5552 4.647399 CCAACCAAAGGGAAAGTAAGTGAA 59.353 41.667 0.00 0.00 38.05 3.18
5218 5553 5.221244 CCAACCAAAGGGAAAGTAAGTGAAG 60.221 44.000 0.00 0.00 38.05 3.02
5219 5554 4.470602 ACCAAAGGGAAAGTAAGTGAAGG 58.529 43.478 0.00 0.00 38.05 3.46
5220 5555 4.079385 ACCAAAGGGAAAGTAAGTGAAGGT 60.079 41.667 0.00 0.00 38.05 3.50
5221 5556 4.519350 CCAAAGGGAAAGTAAGTGAAGGTC 59.481 45.833 0.00 0.00 35.59 3.85
5222 5557 5.377478 CAAAGGGAAAGTAAGTGAAGGTCT 58.623 41.667 0.00 0.00 0.00 3.85
5223 5558 4.893829 AGGGAAAGTAAGTGAAGGTCTC 57.106 45.455 0.00 0.00 0.00 3.36
5224 5559 4.494591 AGGGAAAGTAAGTGAAGGTCTCT 58.505 43.478 0.00 0.00 0.00 3.10
5225 5560 4.528987 AGGGAAAGTAAGTGAAGGTCTCTC 59.471 45.833 0.00 0.00 0.00 3.20
5226 5561 4.487019 GGAAAGTAAGTGAAGGTCTCTCG 58.513 47.826 0.00 0.00 0.00 4.04
5227 5562 4.487019 GAAAGTAAGTGAAGGTCTCTCGG 58.513 47.826 0.00 0.00 0.00 4.63
5228 5563 2.448453 AGTAAGTGAAGGTCTCTCGGG 58.552 52.381 0.00 0.00 0.00 5.14
5229 5564 1.135053 GTAAGTGAAGGTCTCTCGGGC 60.135 57.143 0.00 0.00 0.00 6.13
5230 5565 0.543174 AAGTGAAGGTCTCTCGGGCT 60.543 55.000 0.00 0.00 0.00 5.19
5231 5566 0.543174 AGTGAAGGTCTCTCGGGCTT 60.543 55.000 0.00 0.00 0.00 4.35
5232 5567 0.321996 GTGAAGGTCTCTCGGGCTTT 59.678 55.000 0.00 0.00 0.00 3.51
5233 5568 0.321671 TGAAGGTCTCTCGGGCTTTG 59.678 55.000 0.00 0.00 0.00 2.77
5234 5569 1.003233 AAGGTCTCTCGGGCTTTGC 60.003 57.895 0.00 0.00 0.00 3.68
5288 5623 4.208686 GCGACCCTAGCCACCGAG 62.209 72.222 0.00 0.00 0.00 4.63
5289 5624 3.528370 CGACCCTAGCCACCGAGG 61.528 72.222 0.00 0.00 41.84 4.63
5307 5642 4.918201 CGCTCGGCCCCTTGATCC 62.918 72.222 0.00 0.00 0.00 3.36
5308 5643 4.570874 GCTCGGCCCCTTGATCCC 62.571 72.222 0.00 0.00 0.00 3.85
5309 5644 3.878667 CTCGGCCCCTTGATCCCC 61.879 72.222 0.00 0.00 0.00 4.81
5310 5645 4.431524 TCGGCCCCTTGATCCCCT 62.432 66.667 0.00 0.00 0.00 4.79
5311 5646 3.878667 CGGCCCCTTGATCCCCTC 61.879 72.222 0.00 0.00 0.00 4.30
5312 5647 3.502875 GGCCCCTTGATCCCCTCC 61.503 72.222 0.00 0.00 0.00 4.30
5313 5648 3.878667 GCCCCTTGATCCCCTCCG 61.879 72.222 0.00 0.00 0.00 4.63
5314 5649 3.878667 CCCCTTGATCCCCTCCGC 61.879 72.222 0.00 0.00 0.00 5.54
5315 5650 3.878667 CCCTTGATCCCCTCCGCC 61.879 72.222 0.00 0.00 0.00 6.13
5316 5651 3.878667 CCTTGATCCCCTCCGCCC 61.879 72.222 0.00 0.00 0.00 6.13
5317 5652 3.878667 CTTGATCCCCTCCGCCCC 61.879 72.222 0.00 0.00 0.00 5.80
5360 5695 3.793144 GGCAAAGCTCGTGCGGAG 61.793 66.667 14.29 0.46 43.18 4.63
5361 5696 3.044305 GCAAAGCTCGTGCGGAGT 61.044 61.111 6.59 0.00 45.03 3.85
5362 5697 2.856032 CAAAGCTCGTGCGGAGTG 59.144 61.111 3.48 0.00 45.03 3.51
5363 5698 2.357517 AAAGCTCGTGCGGAGTGG 60.358 61.111 3.48 0.00 45.03 4.00
5364 5699 3.883744 AAAGCTCGTGCGGAGTGGG 62.884 63.158 3.48 0.00 45.03 4.61
5384 5719 3.462678 GTGGCGGGGTCTCCTCTC 61.463 72.222 0.00 0.00 0.00 3.20
5390 5725 4.200283 GGGTCTCCTCTCGCGCTG 62.200 72.222 5.56 0.00 0.00 5.18
5391 5726 4.200283 GGTCTCCTCTCGCGCTGG 62.200 72.222 5.56 3.02 0.00 4.85
5392 5727 4.863925 GTCTCCTCTCGCGCTGGC 62.864 72.222 5.56 0.00 0.00 4.85
5412 5747 4.575973 GCGCTGCAGGATGGGGAT 62.576 66.667 17.12 0.00 35.86 3.85
5413 5748 2.281345 CGCTGCAGGATGGGGATC 60.281 66.667 17.12 0.00 35.86 3.36
5414 5749 2.815945 CGCTGCAGGATGGGGATCT 61.816 63.158 17.12 0.00 35.86 2.75
5415 5750 1.072852 GCTGCAGGATGGGGATCTC 59.927 63.158 17.12 0.00 35.86 2.75
5416 5751 1.370437 CTGCAGGATGGGGATCTCG 59.630 63.158 5.57 0.00 35.86 4.04
5417 5752 1.383109 TGCAGGATGGGGATCTCGT 60.383 57.895 0.00 0.00 35.86 4.18
5418 5753 1.070445 GCAGGATGGGGATCTCGTG 59.930 63.158 0.00 0.00 35.86 4.35
5419 5754 1.750930 CAGGATGGGGATCTCGTGG 59.249 63.158 0.00 0.00 0.00 4.94
5420 5755 2.143419 AGGATGGGGATCTCGTGGC 61.143 63.158 0.00 0.00 0.00 5.01
5421 5756 2.029666 GATGGGGATCTCGTGGCG 59.970 66.667 0.00 0.00 0.00 5.69
5422 5757 2.764128 ATGGGGATCTCGTGGCGT 60.764 61.111 0.00 0.00 0.00 5.68
5423 5758 2.311688 GATGGGGATCTCGTGGCGTT 62.312 60.000 0.00 0.00 0.00 4.84
5424 5759 2.511600 GGGGATCTCGTGGCGTTG 60.512 66.667 0.00 0.00 0.00 4.10
5425 5760 2.511600 GGGATCTCGTGGCGTTGG 60.512 66.667 0.00 0.00 0.00 3.77
5426 5761 2.511600 GGATCTCGTGGCGTTGGG 60.512 66.667 0.00 0.00 0.00 4.12
5427 5762 3.195698 GATCTCGTGGCGTTGGGC 61.196 66.667 0.00 0.00 42.51 5.36
5460 5795 4.711949 CGAGCAGCCTTGTGCCCT 62.712 66.667 0.00 0.00 45.20 5.19
5461 5796 3.060615 GAGCAGCCTTGTGCCCTG 61.061 66.667 0.00 0.00 45.20 4.45
5462 5797 4.673375 AGCAGCCTTGTGCCCTGG 62.673 66.667 0.00 0.00 45.20 4.45
5468 5803 4.641645 CTTGTGCCCTGGCGTGGA 62.642 66.667 3.32 0.00 45.51 4.02
5469 5804 4.641645 TTGTGCCCTGGCGTGGAG 62.642 66.667 3.32 0.00 45.51 3.86
5481 5816 4.394712 GTGGAGGCGGTGGTCCTG 62.395 72.222 0.00 0.00 33.24 3.86
5484 5819 4.767255 GAGGCGGTGGTCCTGCTG 62.767 72.222 0.00 0.00 33.24 4.41
5509 5844 3.414700 GCGACCTGCAGTGGTTCG 61.415 66.667 13.81 15.09 45.45 3.95
5510 5845 2.738521 CGACCTGCAGTGGTTCGG 60.739 66.667 13.81 0.00 41.00 4.30
5511 5846 3.050275 GACCTGCAGTGGTTCGGC 61.050 66.667 13.81 0.00 41.00 5.54
5512 5847 4.988598 ACCTGCAGTGGTTCGGCG 62.989 66.667 13.81 0.00 39.99 6.46
5588 5923 3.971894 GGAGTGGATCCGGATGGT 58.028 61.111 24.82 0.00 38.67 3.55
5589 5924 1.447643 GGAGTGGATCCGGATGGTG 59.552 63.158 24.82 0.00 38.67 4.17
5590 5925 1.447643 GAGTGGATCCGGATGGTGG 59.552 63.158 24.82 0.00 36.30 4.61
5591 5926 1.002921 AGTGGATCCGGATGGTGGA 59.997 57.895 24.82 0.00 40.46 4.02
5592 5927 1.050988 AGTGGATCCGGATGGTGGAG 61.051 60.000 24.82 0.00 39.30 3.86
5593 5928 1.766059 TGGATCCGGATGGTGGAGG 60.766 63.158 24.82 0.00 39.30 4.30
5594 5929 1.766461 GGATCCGGATGGTGGAGGT 60.766 63.158 24.82 0.00 39.30 3.85
5595 5930 1.447643 GATCCGGATGGTGGAGGTG 59.552 63.158 24.82 0.00 39.30 4.00
5596 5931 2.666596 GATCCGGATGGTGGAGGTGC 62.667 65.000 24.82 0.00 39.30 5.01
5597 5932 3.402681 CCGGATGGTGGAGGTGCT 61.403 66.667 0.00 0.00 0.00 4.40
5598 5933 2.187946 CGGATGGTGGAGGTGCTC 59.812 66.667 0.00 0.00 0.00 4.26
5599 5934 2.362369 CGGATGGTGGAGGTGCTCT 61.362 63.158 0.00 0.00 0.00 4.09
5600 5935 1.222936 GGATGGTGGAGGTGCTCTG 59.777 63.158 0.00 0.00 0.00 3.35
5601 5936 1.222936 GATGGTGGAGGTGCTCTGG 59.777 63.158 0.00 0.00 0.00 3.86
5602 5937 2.883267 GATGGTGGAGGTGCTCTGGC 62.883 65.000 0.00 0.00 39.26 4.85
5603 5938 4.767255 GGTGGAGGTGCTCTGGCG 62.767 72.222 0.00 0.00 42.25 5.69
5604 5939 4.767255 GTGGAGGTGCTCTGGCGG 62.767 72.222 0.00 0.00 42.25 6.13
5607 5942 4.828925 GAGGTGCTCTGGCGGCTC 62.829 72.222 11.43 0.00 42.25 4.70
5609 5944 4.400961 GGTGCTCTGGCGGCTCTT 62.401 66.667 11.43 0.00 42.25 2.85
5610 5945 3.123620 GTGCTCTGGCGGCTCTTG 61.124 66.667 11.43 0.00 42.25 3.02
5611 5946 4.399395 TGCTCTGGCGGCTCTTGG 62.399 66.667 11.43 0.00 42.25 3.61
5613 5948 4.399395 CTCTGGCGGCTCTTGGCA 62.399 66.667 11.43 0.00 44.01 4.92
5619 5954 3.515286 CGGCTCTTGGCAGCATGG 61.515 66.667 0.00 0.00 41.65 3.66
5620 5955 2.044650 GGCTCTTGGCAGCATGGA 60.045 61.111 0.00 0.00 41.65 3.41
5621 5956 1.455217 GGCTCTTGGCAGCATGGAT 60.455 57.895 0.00 0.00 41.65 3.41
5622 5957 1.453762 GGCTCTTGGCAGCATGGATC 61.454 60.000 0.00 0.00 41.65 3.36
5623 5958 1.453762 GCTCTTGGCAGCATGGATCC 61.454 60.000 4.20 4.20 39.43 3.36
5624 5959 1.153107 TCTTGGCAGCATGGATCCG 60.153 57.895 7.39 0.00 35.86 4.18
5625 5960 2.124193 TTGGCAGCATGGATCCGG 60.124 61.111 7.39 0.00 35.86 5.14
5626 5961 4.881440 TGGCAGCATGGATCCGGC 62.881 66.667 17.95 17.95 35.86 6.13
5629 5964 4.552365 CAGCATGGATCCGGCGGT 62.552 66.667 27.32 13.58 0.00 5.68
5630 5965 3.797353 AGCATGGATCCGGCGGTT 61.797 61.111 27.32 18.90 0.00 4.44
5631 5966 3.585990 GCATGGATCCGGCGGTTG 61.586 66.667 27.32 16.69 0.00 3.77
5632 5967 2.901840 CATGGATCCGGCGGTTGG 60.902 66.667 27.32 7.09 0.00 3.77
5633 5968 4.189580 ATGGATCCGGCGGTTGGG 62.190 66.667 27.32 0.00 0.00 4.12
5662 5997 3.080121 AGGCTCCTGGCTCTTCGG 61.080 66.667 0.00 0.00 46.86 4.30
5663 5998 4.847444 GGCTCCTGGCTCTTCGGC 62.847 72.222 0.00 0.00 41.46 5.54
5665 6000 4.521062 CTCCTGGCTCTTCGGCGG 62.521 72.222 7.21 0.00 43.85 6.13
5684 6019 4.883354 GCCGCCCCTGCTGCTATT 62.883 66.667 0.00 0.00 43.54 1.73
5685 6020 2.903855 CCGCCCCTGCTGCTATTG 60.904 66.667 0.00 0.00 34.43 1.90
5686 6021 2.124570 CGCCCCTGCTGCTATTGT 60.125 61.111 0.00 0.00 34.43 2.71
5687 6022 2.475466 CGCCCCTGCTGCTATTGTG 61.475 63.158 0.00 0.00 34.43 3.33
5688 6023 2.123428 GCCCCTGCTGCTATTGTGG 61.123 63.158 0.00 0.00 33.53 4.17
5689 6024 2.123428 CCCCTGCTGCTATTGTGGC 61.123 63.158 0.00 0.00 0.00 5.01
5690 6025 1.077212 CCCTGCTGCTATTGTGGCT 60.077 57.895 0.00 0.00 0.00 4.75
5691 6026 1.381928 CCCTGCTGCTATTGTGGCTG 61.382 60.000 0.00 0.00 0.00 4.85
5692 6027 0.679002 CCTGCTGCTATTGTGGCTGT 60.679 55.000 0.00 0.00 0.00 4.40
5693 6028 0.450583 CTGCTGCTATTGTGGCTGTG 59.549 55.000 0.00 0.00 0.00 3.66
5694 6029 0.961857 TGCTGCTATTGTGGCTGTGG 60.962 55.000 0.00 0.00 0.00 4.17
5695 6030 1.805254 CTGCTATTGTGGCTGTGGC 59.195 57.895 0.00 0.00 37.82 5.01
5696 6031 0.961857 CTGCTATTGTGGCTGTGGCA 60.962 55.000 0.00 0.00 40.87 4.92
5697 6032 0.961857 TGCTATTGTGGCTGTGGCAG 60.962 55.000 0.00 0.00 39.19 4.85
5698 6033 0.677731 GCTATTGTGGCTGTGGCAGA 60.678 55.000 0.00 0.00 39.19 4.26
5699 6034 2.020694 GCTATTGTGGCTGTGGCAGAT 61.021 52.381 0.00 0.00 39.19 2.90
5700 6035 1.674441 CTATTGTGGCTGTGGCAGATG 59.326 52.381 0.00 0.00 39.19 2.90
5701 6036 0.251474 ATTGTGGCTGTGGCAGATGT 60.251 50.000 0.00 0.00 39.19 3.06
5702 6037 1.174078 TTGTGGCTGTGGCAGATGTG 61.174 55.000 0.00 0.00 39.19 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.195448 GCTGTGTGGACAAATCGAGTG 59.805 52.381 0.00 0.00 0.00 3.51
41 42 3.487574 CGTCTATCTTTGATTCGGAGCAC 59.512 47.826 0.00 0.00 0.00 4.40
67 68 2.978010 CGGCCTTTGTGAAGCGGT 60.978 61.111 0.00 0.00 0.00 5.68
69 70 3.737172 CCCGGCCTTTGTGAAGCG 61.737 66.667 0.00 0.00 0.00 4.68
92 93 3.630148 CCGCTGCTTCCGCATACG 61.630 66.667 0.00 0.00 46.74 3.06
107 108 2.572191 TCCTATTGTAGTCGTTGCCG 57.428 50.000 0.00 0.00 0.00 5.69
112 113 4.789012 TCCGTTTTCCTATTGTAGTCGT 57.211 40.909 0.00 0.00 0.00 4.34
114 115 6.072893 TGCTTTTCCGTTTTCCTATTGTAGTC 60.073 38.462 0.00 0.00 0.00 2.59
117 118 5.998981 TCTGCTTTTCCGTTTTCCTATTGTA 59.001 36.000 0.00 0.00 0.00 2.41
210 211 3.551887 CTGGTTTCGCGGGGTTTGC 62.552 63.158 6.13 0.00 0.00 3.68
308 315 7.448748 TTTCCACTACTATGAAAAGGAAAGC 57.551 36.000 0.00 0.00 38.37 3.51
311 318 6.945435 TGCATTTCCACTACTATGAAAAGGAA 59.055 34.615 0.00 0.00 32.29 3.36
312 319 6.480763 TGCATTTCCACTACTATGAAAAGGA 58.519 36.000 0.00 0.00 32.29 3.36
313 320 6.678900 GCTGCATTTCCACTACTATGAAAAGG 60.679 42.308 0.00 0.00 32.29 3.11
314 321 6.127925 TGCTGCATTTCCACTACTATGAAAAG 60.128 38.462 0.00 0.00 32.29 2.27
315 322 5.709631 TGCTGCATTTCCACTACTATGAAAA 59.290 36.000 0.00 0.00 32.29 2.29
321 338 3.007940 ACACTGCTGCATTTCCACTACTA 59.992 43.478 1.31 0.00 0.00 1.82
322 339 2.224621 ACACTGCTGCATTTCCACTACT 60.225 45.455 1.31 0.00 0.00 2.57
344 361 6.569179 TCCAATTCCTTTGCACTAGTTTAC 57.431 37.500 0.00 0.00 33.73 2.01
349 468 2.424956 GGCTCCAATTCCTTTGCACTAG 59.575 50.000 0.00 0.00 33.73 2.57
360 479 6.924111 TCATACTTTTTCTTGGCTCCAATTC 58.076 36.000 1.30 0.00 35.20 2.17
386 505 3.852286 TCGGTCATTTTACTACATGCGT 58.148 40.909 0.00 0.00 0.00 5.24
404 523 9.751542 AGATGTAGAAAGTAGAAACATATTCGG 57.248 33.333 0.00 0.00 31.19 4.30
413 532 9.924650 GTAGGTTGAAGATGTAGAAAGTAGAAA 57.075 33.333 0.00 0.00 0.00 2.52
414 533 9.085645 TGTAGGTTGAAGATGTAGAAAGTAGAA 57.914 33.333 0.00 0.00 0.00 2.10
415 534 8.645814 TGTAGGTTGAAGATGTAGAAAGTAGA 57.354 34.615 0.00 0.00 0.00 2.59
416 535 8.740906 TCTGTAGGTTGAAGATGTAGAAAGTAG 58.259 37.037 0.00 0.00 0.00 2.57
417 536 8.645814 TCTGTAGGTTGAAGATGTAGAAAGTA 57.354 34.615 0.00 0.00 0.00 2.24
418 537 7.451877 TCTCTGTAGGTTGAAGATGTAGAAAGT 59.548 37.037 0.00 0.00 0.00 2.66
419 538 7.757624 GTCTCTGTAGGTTGAAGATGTAGAAAG 59.242 40.741 0.00 0.00 0.00 2.62
441 560 1.003696 CCCCTTCCCAGTCTTTGTCTC 59.996 57.143 0.00 0.00 0.00 3.36
451 570 4.082408 GTCGTTTTAAAATCCCCTTCCCAG 60.082 45.833 3.52 0.00 0.00 4.45
476 595 3.003068 CGGCTGCTTTCATTTCATCCTAG 59.997 47.826 0.00 0.00 0.00 3.02
481 600 1.747355 CCTCGGCTGCTTTCATTTCAT 59.253 47.619 0.00 0.00 0.00 2.57
497 616 1.740296 CCGGTTGTGTTAGCCCTCG 60.740 63.158 0.00 0.00 0.00 4.63
515 634 4.327680 AGATGTGCTAAACAAAGAGACCC 58.672 43.478 0.00 0.00 43.61 4.46
546 665 4.273724 GCTAAGCCAGTTATTTAGTCCTGC 59.726 45.833 0.00 0.00 0.00 4.85
549 668 4.690122 TCGCTAAGCCAGTTATTTAGTCC 58.310 43.478 0.00 0.00 0.00 3.85
580 699 1.304134 AACCTGATTGGCCGGAACC 60.304 57.895 5.05 0.00 40.22 3.62
691 810 1.821753 TGCTAGGCTGTTCTCTGTCTC 59.178 52.381 0.00 0.00 0.00 3.36
692 811 1.548269 GTGCTAGGCTGTTCTCTGTCT 59.452 52.381 0.00 0.00 0.00 3.41
777 914 1.302271 GAGTTCGGTGGGTTGGGTC 60.302 63.158 0.00 0.00 0.00 4.46
820 962 1.771854 TGGTAAAAGTCAGTGGCAGGA 59.228 47.619 0.00 0.00 0.00 3.86
823 965 1.812324 CGGTGGTAAAAGTCAGTGGCA 60.812 52.381 0.00 0.00 0.00 4.92
824 966 0.872388 CGGTGGTAAAAGTCAGTGGC 59.128 55.000 0.00 0.00 0.00 5.01
827 969 1.134340 TGTGCGGTGGTAAAAGTCAGT 60.134 47.619 0.00 0.00 0.00 3.41
828 970 1.263217 GTGTGCGGTGGTAAAAGTCAG 59.737 52.381 0.00 0.00 0.00 3.51
829 971 1.301423 GTGTGCGGTGGTAAAAGTCA 58.699 50.000 0.00 0.00 0.00 3.41
830 972 0.233848 CGTGTGCGGTGGTAAAAGTC 59.766 55.000 0.00 0.00 0.00 3.01
831 973 1.778027 GCGTGTGCGGTGGTAAAAGT 61.778 55.000 0.00 0.00 38.78 2.66
832 974 1.082366 GCGTGTGCGGTGGTAAAAG 60.082 57.895 0.00 0.00 38.78 2.27
895 1039 4.451150 GCGATGTGTCTGCCCCGA 62.451 66.667 0.00 0.00 0.00 5.14
920 1064 0.627768 GGGGAAAGGGGGAAGAGGAT 60.628 60.000 0.00 0.00 0.00 3.24
924 1068 1.855451 GGTGGGGAAAGGGGGAAGA 60.855 63.158 0.00 0.00 0.00 2.87
962 1106 1.827399 ATCTGGACGCGGTTGGTCTT 61.827 55.000 12.47 0.00 34.82 3.01
990 1134 4.650377 GCCGCCATGGGGAGATCC 62.650 72.222 29.29 8.67 37.91 3.36
1212 1369 1.822615 GAGCAAGAGAGGGGAGCTC 59.177 63.158 4.71 4.71 43.95 4.09
1213 1370 2.057408 CGAGCAAGAGAGGGGAGCT 61.057 63.158 0.00 0.00 38.43 4.09
1214 1371 2.498726 CGAGCAAGAGAGGGGAGC 59.501 66.667 0.00 0.00 0.00 4.70
1250 1410 2.065007 CAGAATCCCCATCCCCATACA 58.935 52.381 0.00 0.00 0.00 2.29
1253 1413 2.160613 ATCAGAATCCCCATCCCCAT 57.839 50.000 0.00 0.00 0.00 4.00
1256 1432 1.283321 GGCTATCAGAATCCCCATCCC 59.717 57.143 0.00 0.00 0.00 3.85
1290 1466 1.630244 CTTGCTCTCCAAAGACGCGG 61.630 60.000 12.47 0.00 31.94 6.46
1356 1532 2.417515 GCCTAACACTAGTCTGTCCTGC 60.418 54.545 0.00 0.00 0.00 4.85
1391 1567 7.092444 ACAATAATCCACCAGACTAAATCCTCA 60.092 37.037 0.00 0.00 0.00 3.86
1408 1595 2.933906 TCTTCGTCGCCAACAATAATCC 59.066 45.455 0.00 0.00 0.00 3.01
1469 1656 7.147312 CACTTGCTCAAACAGATTAATTTCCA 58.853 34.615 0.00 0.00 0.00 3.53
1532 1722 3.492102 TCTCCAGTCTTGGGAAACTTG 57.508 47.619 0.00 0.00 45.10 3.16
1549 1739 8.672823 TTTCAGTCTAAAGGGTTTAACTTCTC 57.327 34.615 0.00 0.00 0.00 2.87
1638 1834 6.639686 CAGTGAAAATTCATGGAGAACACAAG 59.360 38.462 0.00 0.00 39.49 3.16
1692 1888 4.096231 CAGGCATACAATGTTTCATCCGAA 59.904 41.667 0.00 0.00 0.00 4.30
1719 1915 4.086457 TGTAGATGCACACCTAGACAGAA 58.914 43.478 0.00 0.00 0.00 3.02
1720 1916 3.697166 TGTAGATGCACACCTAGACAGA 58.303 45.455 0.00 0.00 0.00 3.41
1721 1917 4.142071 ACATGTAGATGCACACCTAGACAG 60.142 45.833 0.00 0.00 32.14 3.51
1722 1918 3.769300 ACATGTAGATGCACACCTAGACA 59.231 43.478 0.00 0.00 32.14 3.41
1723 1919 4.115516 CACATGTAGATGCACACCTAGAC 58.884 47.826 0.00 0.00 32.14 2.59
1724 1920 3.430790 GCACATGTAGATGCACACCTAGA 60.431 47.826 0.00 0.00 41.65 2.43
1725 1921 2.868583 GCACATGTAGATGCACACCTAG 59.131 50.000 0.00 0.00 41.65 3.02
1726 1922 2.501316 AGCACATGTAGATGCACACCTA 59.499 45.455 0.00 0.00 44.59 3.08
1727 1923 1.280133 AGCACATGTAGATGCACACCT 59.720 47.619 0.00 0.00 44.59 4.00
1728 1924 1.667724 GAGCACATGTAGATGCACACC 59.332 52.381 0.00 0.00 44.59 4.16
1729 1925 2.625737 AGAGCACATGTAGATGCACAC 58.374 47.619 0.00 0.00 44.59 3.82
1730 1926 3.448660 ACTAGAGCACATGTAGATGCACA 59.551 43.478 0.00 0.00 44.59 4.57
1731 1927 4.052159 ACTAGAGCACATGTAGATGCAC 57.948 45.455 0.00 0.00 44.59 4.57
1732 1928 4.743057 AACTAGAGCACATGTAGATGCA 57.257 40.909 0.00 0.00 44.59 3.96
1733 1929 6.347240 GCAATAACTAGAGCACATGTAGATGC 60.347 42.308 0.00 0.00 42.39 3.91
1734 1930 6.703165 TGCAATAACTAGAGCACATGTAGATG 59.297 38.462 0.00 0.00 35.49 2.90
1735 1931 6.820335 TGCAATAACTAGAGCACATGTAGAT 58.180 36.000 0.00 0.00 31.05 1.98
1736 1932 6.220726 TGCAATAACTAGAGCACATGTAGA 57.779 37.500 0.00 0.00 31.05 2.59
1744 1940 6.758416 CACTTAGATGTGCAATAACTAGAGCA 59.242 38.462 0.00 0.00 34.10 4.26
1745 1941 6.980978 TCACTTAGATGTGCAATAACTAGAGC 59.019 38.462 0.00 0.00 37.81 4.09
1746 1942 8.194104 AGTCACTTAGATGTGCAATAACTAGAG 58.806 37.037 0.00 0.00 37.81 2.43
1747 1943 8.067751 AGTCACTTAGATGTGCAATAACTAGA 57.932 34.615 0.00 0.00 37.81 2.43
1748 1944 7.976175 TGAGTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
1749 1945 7.836842 TGAGTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
1750 1946 6.701340 TGAGTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
1751 1947 6.968131 TGAGTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
1752 1948 7.823799 TGATTGAGTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
1753 1949 7.330262 TGATTGAGTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
1754 1950 6.175471 TGATTGAGTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
1755 1951 5.550290 TGATTGAGTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
1756 1952 5.151297 TGATTGAGTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
1757 1953 6.148480 AGTTTGATTGAGTCACTTAGATGTGC 59.852 38.462 0.00 0.00 36.32 4.57
1758 1954 7.664082 AGTTTGATTGAGTCACTTAGATGTG 57.336 36.000 0.00 0.00 36.32 3.21
1759 1955 8.807118 TCTAGTTTGATTGAGTCACTTAGATGT 58.193 33.333 0.00 0.00 36.32 3.06
1760 1956 9.645059 TTCTAGTTTGATTGAGTCACTTAGATG 57.355 33.333 0.00 0.00 36.32 2.90
1762 1958 9.698309 CTTTCTAGTTTGATTGAGTCACTTAGA 57.302 33.333 0.00 0.00 36.32 2.10
1763 1959 9.698309 TCTTTCTAGTTTGATTGAGTCACTTAG 57.302 33.333 0.00 0.00 36.32 2.18
1765 1961 8.964476 TTCTTTCTAGTTTGATTGAGTCACTT 57.036 30.769 0.00 0.00 36.32 3.16
1766 1962 8.964476 TTTCTTTCTAGTTTGATTGAGTCACT 57.036 30.769 0.00 0.00 36.32 3.41
1767 1963 9.657121 CTTTTCTTTCTAGTTTGATTGAGTCAC 57.343 33.333 0.00 0.00 36.32 3.67
1768 1964 8.840321 CCTTTTCTTTCTAGTTTGATTGAGTCA 58.160 33.333 0.00 0.00 34.25 3.41
1769 1965 9.057089 TCCTTTTCTTTCTAGTTTGATTGAGTC 57.943 33.333 0.00 0.00 0.00 3.36
1770 1966 8.980481 TCCTTTTCTTTCTAGTTTGATTGAGT 57.020 30.769 0.00 0.00 0.00 3.41
1796 1992 7.344441 GTGCGAGCATTTTCTTTTACATTTTT 58.656 30.769 0.00 0.00 0.00 1.94
1797 1993 6.345723 CGTGCGAGCATTTTCTTTTACATTTT 60.346 34.615 0.00 0.00 0.00 1.82
1798 1994 5.116983 CGTGCGAGCATTTTCTTTTACATTT 59.883 36.000 0.00 0.00 0.00 2.32
1799 1995 4.616802 CGTGCGAGCATTTTCTTTTACATT 59.383 37.500 0.00 0.00 0.00 2.71
1800 1996 4.083537 TCGTGCGAGCATTTTCTTTTACAT 60.084 37.500 0.00 0.00 0.00 2.29
1801 1997 3.248841 TCGTGCGAGCATTTTCTTTTACA 59.751 39.130 0.00 0.00 0.00 2.41
1802 1998 3.805823 TCGTGCGAGCATTTTCTTTTAC 58.194 40.909 0.00 0.00 0.00 2.01
1803 1999 4.475763 TTCGTGCGAGCATTTTCTTTTA 57.524 36.364 0.00 0.00 0.00 1.52
1804 2000 3.347958 TTCGTGCGAGCATTTTCTTTT 57.652 38.095 0.00 0.00 0.00 2.27
1805 2001 3.189287 AGATTCGTGCGAGCATTTTCTTT 59.811 39.130 0.00 0.00 0.00 2.52
1806 2002 2.744202 AGATTCGTGCGAGCATTTTCTT 59.256 40.909 0.00 0.00 0.00 2.52
1807 2003 2.350522 AGATTCGTGCGAGCATTTTCT 58.649 42.857 0.00 0.00 0.00 2.52
1808 2004 2.813779 AGATTCGTGCGAGCATTTTC 57.186 45.000 0.00 0.00 0.00 2.29
1809 2005 3.485877 GCTAAGATTCGTGCGAGCATTTT 60.486 43.478 0.00 0.00 0.00 1.82
1810 2006 2.030946 GCTAAGATTCGTGCGAGCATTT 59.969 45.455 0.00 0.00 0.00 2.32
1811 2007 1.594862 GCTAAGATTCGTGCGAGCATT 59.405 47.619 0.00 0.00 0.00 3.56
1812 2008 1.212616 GCTAAGATTCGTGCGAGCAT 58.787 50.000 0.00 0.00 0.00 3.79
1813 2009 2.665777 GCTAAGATTCGTGCGAGCA 58.334 52.632 0.00 0.00 0.00 4.26
1818 2014 5.138800 TGATTTTACGCTAAGATTCGTGC 57.861 39.130 0.00 0.00 39.46 5.34
1819 2015 7.370836 GTCATTGATTTTACGCTAAGATTCGTG 59.629 37.037 0.00 0.00 39.46 4.35
1820 2016 7.064134 TGTCATTGATTTTACGCTAAGATTCGT 59.936 33.333 0.00 0.00 42.09 3.85
1821 2017 7.398746 TGTCATTGATTTTACGCTAAGATTCG 58.601 34.615 0.00 0.00 0.00 3.34
1824 2020 8.993121 CCTATGTCATTGATTTTACGCTAAGAT 58.007 33.333 0.00 0.00 0.00 2.40
1825 2021 8.201464 TCCTATGTCATTGATTTTACGCTAAGA 58.799 33.333 0.00 0.00 0.00 2.10
1826 2022 8.276325 GTCCTATGTCATTGATTTTACGCTAAG 58.724 37.037 0.00 0.00 0.00 2.18
1827 2023 7.985184 AGTCCTATGTCATTGATTTTACGCTAA 59.015 33.333 0.00 0.00 0.00 3.09
1828 2024 7.497595 AGTCCTATGTCATTGATTTTACGCTA 58.502 34.615 0.00 0.00 0.00 4.26
1829 2025 6.349300 AGTCCTATGTCATTGATTTTACGCT 58.651 36.000 0.00 0.00 0.00 5.07
1830 2026 6.604735 AGTCCTATGTCATTGATTTTACGC 57.395 37.500 0.00 0.00 0.00 4.42
1831 2027 9.529325 TCTAAGTCCTATGTCATTGATTTTACG 57.471 33.333 0.00 0.00 0.00 3.18
1834 2030 9.911788 ACATCTAAGTCCTATGTCATTGATTTT 57.088 29.630 0.00 0.00 0.00 1.82
1835 2031 9.334947 CACATCTAAGTCCTATGTCATTGATTT 57.665 33.333 0.00 0.00 31.60 2.17
1836 2032 7.443575 GCACATCTAAGTCCTATGTCATTGATT 59.556 37.037 0.00 0.00 31.60 2.57
1837 2033 6.933521 GCACATCTAAGTCCTATGTCATTGAT 59.066 38.462 0.00 0.00 31.60 2.57
1838 2034 6.127083 TGCACATCTAAGTCCTATGTCATTGA 60.127 38.462 0.00 0.00 31.60 2.57
1839 2035 6.051074 TGCACATCTAAGTCCTATGTCATTG 58.949 40.000 0.00 0.00 31.60 2.82
1840 2036 6.239217 TGCACATCTAAGTCCTATGTCATT 57.761 37.500 0.00 0.00 31.60 2.57
1841 2037 5.876651 TGCACATCTAAGTCCTATGTCAT 57.123 39.130 0.00 0.00 31.60 3.06
1842 2038 5.675684 TTGCACATCTAAGTCCTATGTCA 57.324 39.130 0.00 0.00 31.60 3.58
1843 2039 7.437748 AGTATTGCACATCTAAGTCCTATGTC 58.562 38.462 0.00 0.00 31.60 3.06
1844 2040 7.366847 AGTATTGCACATCTAAGTCCTATGT 57.633 36.000 0.00 0.00 34.22 2.29
1845 2041 9.416794 CTAAGTATTGCACATCTAAGTCCTATG 57.583 37.037 0.00 0.00 0.00 2.23
1846 2042 9.368416 TCTAAGTATTGCACATCTAAGTCCTAT 57.632 33.333 0.00 0.00 0.00 2.57
1847 2043 8.762481 TCTAAGTATTGCACATCTAAGTCCTA 57.238 34.615 0.00 0.00 0.00 2.94
1848 2044 7.661536 TCTAAGTATTGCACATCTAAGTCCT 57.338 36.000 0.00 0.00 0.00 3.85
1849 2045 6.422400 GCTCTAAGTATTGCACATCTAAGTCC 59.578 42.308 0.00 0.00 0.00 3.85
1850 2046 6.980978 TGCTCTAAGTATTGCACATCTAAGTC 59.019 38.462 0.00 0.00 0.00 3.01
1851 2047 6.878317 TGCTCTAAGTATTGCACATCTAAGT 58.122 36.000 0.00 0.00 0.00 2.24
1860 2056 6.715347 TCTAGATGTGCTCTAAGTATTGCA 57.285 37.500 0.00 0.00 36.02 4.08
1861 2057 7.579589 CATCTAGATGTGCTCTAAGTATTGC 57.420 40.000 22.42 0.00 36.02 3.56
1921 2117 4.279982 TGGAAAGATATGGCATGCAGAAA 58.720 39.130 21.36 1.71 0.00 2.52
1977 2173 5.477291 TGAATCGGAGGGAGTATAGTGAATC 59.523 44.000 0.00 0.00 0.00 2.52
2040 2243 9.037737 GCGACAACTAATATGGTACTAAATCAA 57.962 33.333 0.00 0.00 0.00 2.57
2041 2244 8.418662 AGCGACAACTAATATGGTACTAAATCA 58.581 33.333 0.00 0.00 0.00 2.57
2042 2245 8.700644 CAGCGACAACTAATATGGTACTAAATC 58.299 37.037 0.00 0.00 0.00 2.17
2043 2246 8.418662 TCAGCGACAACTAATATGGTACTAAAT 58.581 33.333 0.00 0.00 0.00 1.40
2059 2262 6.224420 ACTTTGTACTAAATCAGCGACAAC 57.776 37.500 0.00 0.00 34.68 3.32
2084 2287 1.664151 GCCGCTGATTTGGTACTGTAC 59.336 52.381 9.46 9.46 0.00 2.90
2085 2288 1.276705 TGCCGCTGATTTGGTACTGTA 59.723 47.619 0.00 0.00 0.00 2.74
2086 2289 0.036164 TGCCGCTGATTTGGTACTGT 59.964 50.000 0.00 0.00 0.00 3.55
2087 2290 1.164411 TTGCCGCTGATTTGGTACTG 58.836 50.000 0.00 0.00 0.00 2.74
2088 2291 2.128771 ATTGCCGCTGATTTGGTACT 57.871 45.000 0.00 0.00 0.00 2.73
2109 2312 6.767524 ATGTTACTCTCTCCGATCCATATC 57.232 41.667 0.00 0.00 0.00 1.63
2152 2355 6.869421 ATAATTTGCATGTACGCACTTTTC 57.131 33.333 0.00 0.00 42.87 2.29
2266 2471 5.431179 TCTGTAAGAGGGGGTATTTGAAC 57.569 43.478 0.00 0.00 38.67 3.18
2380 2585 8.870075 AGAGAAACTAGCAATAAGAACCAAAT 57.130 30.769 0.00 0.00 0.00 2.32
2489 2695 5.882000 TGGAACACATCATCTACTTCAATGG 59.118 40.000 0.00 0.00 0.00 3.16
2750 3011 5.979993 TGTGAAACGGCTTAATACATAGGA 58.020 37.500 0.00 0.00 42.39 2.94
2865 3126 3.785887 AGCAGGTTAATCCATGTCCCTAA 59.214 43.478 0.00 0.00 39.02 2.69
2967 3229 8.154649 ACTTGTTTAACCTAAGAAGACATGTG 57.845 34.615 1.15 0.00 33.82 3.21
3039 3302 7.169645 GGTATTCAGTTACACAACGTACTGAAA 59.830 37.037 25.04 15.41 43.46 2.69
3048 3311 7.094975 TGTGCATTAGGTATTCAGTTACACAAC 60.095 37.037 0.00 0.00 30.88 3.32
3087 3350 1.608055 TGAATCCCACACAGCAGTTG 58.392 50.000 0.00 0.00 0.00 3.16
3099 3362 5.550290 ACAACAACAATGGAAATGAATCCC 58.450 37.500 0.00 0.00 38.82 3.85
3104 3367 5.114780 CACCAACAACAACAATGGAAATGA 58.885 37.500 0.00 0.00 36.75 2.57
3238 3502 8.936864 GCAACACTAATAGTCAATACAACTTCT 58.063 33.333 0.00 0.00 0.00 2.85
3240 3504 8.615878 TGCAACACTAATAGTCAATACAACTT 57.384 30.769 0.00 0.00 0.00 2.66
3366 3630 3.775316 CAAGTGTTGGAGGTATAGTCCCT 59.225 47.826 0.00 0.00 32.49 4.20
3533 3798 1.002087 GGATATCCTAGCACAACCCGG 59.998 57.143 14.97 0.00 0.00 5.73
3557 3822 7.597288 ATTACATCTGTACATAGCACCTACA 57.403 36.000 0.00 0.00 0.00 2.74
3624 3890 1.962321 TTGCCGTTGAGCCGCCTATA 61.962 55.000 0.00 0.00 0.00 1.31
3725 3991 2.743928 GGAGCCAACTGCACTCGG 60.744 66.667 0.00 0.00 44.83 4.63
3756 4022 8.674263 AAACAATGAAGCCAAAATTATCACAA 57.326 26.923 0.00 0.00 0.00 3.33
3791 4057 7.888021 TGTTCCACACAGATTATTACCAGAAAT 59.112 33.333 0.00 0.00 0.00 2.17
3876 4142 2.816672 TCCATGTCGCAGCACATTAAAA 59.183 40.909 7.50 0.00 34.60 1.52
3885 4151 1.739466 TGAAAATCTCCATGTCGCAGC 59.261 47.619 0.00 0.00 0.00 5.25
4005 4271 7.147976 ACAGGAGTGATTTAATTTGCTTTCAC 58.852 34.615 0.00 0.00 34.99 3.18
4023 4293 3.873910 CCGGTCAAATAATCACAGGAGT 58.126 45.455 0.00 0.00 0.00 3.85
4064 4334 2.352651 CCGACGAGAAAATGCATGTGAT 59.647 45.455 0.00 0.00 0.00 3.06
4065 4335 1.731709 CCGACGAGAAAATGCATGTGA 59.268 47.619 0.00 0.00 0.00 3.58
4066 4336 1.791555 GCCGACGAGAAAATGCATGTG 60.792 52.381 0.00 0.00 0.00 3.21
4084 4360 3.686916 ACTAAAGAAGTGTGAGGAGCC 57.313 47.619 0.00 0.00 36.93 4.70
4194 4478 1.513858 AACAGTGACTACCCAACCCA 58.486 50.000 0.00 0.00 0.00 4.51
4247 4531 0.101219 GCGTTTGGATGATGCCCTTC 59.899 55.000 0.00 0.00 0.00 3.46
4263 4547 0.035317 TCATTCCTGCACTCAAGCGT 59.965 50.000 0.00 0.00 37.31 5.07
4264 4548 0.725686 CTCATTCCTGCACTCAAGCG 59.274 55.000 0.00 0.00 37.31 4.68
4266 4550 2.630158 CCTCTCATTCCTGCACTCAAG 58.370 52.381 0.00 0.00 0.00 3.02
4267 4551 1.339438 GCCTCTCATTCCTGCACTCAA 60.339 52.381 0.00 0.00 0.00 3.02
4357 4641 2.922740 AAGAAAACACTAGGGCGACA 57.077 45.000 0.00 0.00 0.00 4.35
4422 4711 5.251700 AGTTATCCATGTCCTTTGGTTCTCT 59.748 40.000 0.00 0.00 35.64 3.10
4424 4713 5.520748 AGTTATCCATGTCCTTTGGTTCT 57.479 39.130 0.00 0.00 35.64 3.01
4463 4753 1.138266 ACGAGGCTACGGCATTATGTT 59.862 47.619 10.29 0.00 40.87 2.71
4470 4760 1.077930 AGAGTACGAGGCTACGGCA 60.078 57.895 10.29 0.00 40.87 5.69
4478 4768 5.263968 ACATAATGGTTGAGAGTACGAGG 57.736 43.478 0.00 0.00 0.00 4.63
4485 4775 7.693969 AGAAGGAAAACATAATGGTTGAGAG 57.306 36.000 0.00 0.00 0.00 3.20
4535 4864 1.072331 GAACTGGAAAGTGGAGGCTGA 59.928 52.381 0.00 0.00 0.00 4.26
4575 4906 0.872388 GGCTCGACAAACGGAACAAT 59.128 50.000 0.00 0.00 42.82 2.71
4840 5173 0.801251 GAGAGCAAGGCACACATGAC 59.199 55.000 0.00 0.00 0.00 3.06
4841 5174 0.397564 TGAGAGCAAGGCACACATGA 59.602 50.000 0.00 0.00 0.00 3.07
4842 5175 0.803117 CTGAGAGCAAGGCACACATG 59.197 55.000 0.00 0.00 0.00 3.21
4843 5176 0.959372 GCTGAGAGCAAGGCACACAT 60.959 55.000 0.00 0.00 41.89 3.21
4844 5177 1.598962 GCTGAGAGCAAGGCACACA 60.599 57.895 0.00 0.00 41.89 3.72
4845 5178 3.261933 GCTGAGAGCAAGGCACAC 58.738 61.111 0.00 0.00 41.89 3.82
4918 5251 8.574251 ACACATAGGCAATCTTATGTTTTACA 57.426 30.769 0.00 0.00 31.51 2.41
4946 5280 6.980978 AGTAGATGACAATACCATTTGAGTCG 59.019 38.462 0.00 0.00 0.00 4.18
4992 5326 1.519758 CGAGCAAGCAAGCAAAAAGTG 59.480 47.619 3.19 0.00 36.85 3.16
5080 5415 3.415212 CTTGGACATCTCACACCAATGT 58.585 45.455 0.00 0.00 40.78 2.71
5103 5438 2.027653 GGAAGTCTGCCAGCTACTCTTT 60.028 50.000 0.00 0.00 0.00 2.52
5155 5490 9.463443 GCACCGCTATAAGAATTTAATTTGATT 57.537 29.630 0.00 0.00 0.00 2.57
5186 5521 3.182887 TCCCTTTGGTTGGCATGTTAT 57.817 42.857 0.00 0.00 0.00 1.89
5190 5525 1.693606 ACTTTCCCTTTGGTTGGCATG 59.306 47.619 0.00 0.00 0.00 4.06
5203 5538 4.618693 CGAGAGACCTTCACTTACTTTCCC 60.619 50.000 0.00 0.00 0.00 3.97
5204 5539 4.487019 CGAGAGACCTTCACTTACTTTCC 58.513 47.826 0.00 0.00 0.00 3.13
5205 5540 4.487019 CCGAGAGACCTTCACTTACTTTC 58.513 47.826 0.00 0.00 0.00 2.62
5206 5541 3.258622 CCCGAGAGACCTTCACTTACTTT 59.741 47.826 0.00 0.00 0.00 2.66
5207 5542 2.826725 CCCGAGAGACCTTCACTTACTT 59.173 50.000 0.00 0.00 0.00 2.24
5208 5543 2.448453 CCCGAGAGACCTTCACTTACT 58.552 52.381 0.00 0.00 0.00 2.24
5209 5544 1.135053 GCCCGAGAGACCTTCACTTAC 60.135 57.143 0.00 0.00 0.00 2.34
5210 5545 1.183549 GCCCGAGAGACCTTCACTTA 58.816 55.000 0.00 0.00 0.00 2.24
5211 5546 0.543174 AGCCCGAGAGACCTTCACTT 60.543 55.000 0.00 0.00 0.00 3.16
5212 5547 0.543174 AAGCCCGAGAGACCTTCACT 60.543 55.000 0.00 0.00 0.00 3.41
5213 5548 0.321996 AAAGCCCGAGAGACCTTCAC 59.678 55.000 0.00 0.00 0.00 3.18
5214 5549 0.321671 CAAAGCCCGAGAGACCTTCA 59.678 55.000 0.00 0.00 0.00 3.02
5215 5550 1.021920 GCAAAGCCCGAGAGACCTTC 61.022 60.000 0.00 0.00 0.00 3.46
5216 5551 1.003233 GCAAAGCCCGAGAGACCTT 60.003 57.895 0.00 0.00 0.00 3.50
5217 5552 2.665603 GCAAAGCCCGAGAGACCT 59.334 61.111 0.00 0.00 0.00 3.85
5218 5553 2.436824 GGCAAAGCCCGAGAGACC 60.437 66.667 0.00 0.00 44.06 3.85
5271 5606 4.208686 CTCGGTGGCTAGGGTCGC 62.209 72.222 0.00 0.00 0.00 5.19
5272 5607 3.528370 CCTCGGTGGCTAGGGTCG 61.528 72.222 0.00 0.00 0.00 4.79
5290 5625 4.918201 GGATCAAGGGGCCGAGCG 62.918 72.222 0.00 0.00 0.00 5.03
5291 5626 4.570874 GGGATCAAGGGGCCGAGC 62.571 72.222 0.00 0.00 0.00 5.03
5292 5627 3.878667 GGGGATCAAGGGGCCGAG 61.879 72.222 0.00 0.00 0.00 4.63
5293 5628 4.431524 AGGGGATCAAGGGGCCGA 62.432 66.667 0.00 0.00 0.00 5.54
5294 5629 3.878667 GAGGGGATCAAGGGGCCG 61.879 72.222 0.00 0.00 0.00 6.13
5295 5630 3.502875 GGAGGGGATCAAGGGGCC 61.503 72.222 0.00 0.00 0.00 5.80
5296 5631 3.878667 CGGAGGGGATCAAGGGGC 61.879 72.222 0.00 0.00 0.00 5.80
5297 5632 3.878667 GCGGAGGGGATCAAGGGG 61.879 72.222 0.00 0.00 0.00 4.79
5298 5633 3.878667 GGCGGAGGGGATCAAGGG 61.879 72.222 0.00 0.00 0.00 3.95
5299 5634 3.878667 GGGCGGAGGGGATCAAGG 61.879 72.222 0.00 0.00 0.00 3.61
5300 5635 3.878667 GGGGCGGAGGGGATCAAG 61.879 72.222 0.00 0.00 0.00 3.02
5343 5678 3.793144 CTCCGCACGAGCTTTGCC 61.793 66.667 13.92 0.00 39.10 4.52
5344 5679 3.044305 ACTCCGCACGAGCTTTGC 61.044 61.111 10.50 10.50 43.01 3.68
5345 5680 2.671177 CCACTCCGCACGAGCTTTG 61.671 63.158 2.73 0.00 43.01 2.77
5346 5681 2.357517 CCACTCCGCACGAGCTTT 60.358 61.111 2.73 0.00 43.01 3.51
5347 5682 4.379243 CCCACTCCGCACGAGCTT 62.379 66.667 2.73 0.00 43.01 3.74
5367 5702 3.462678 GAGAGGAGACCCCGCCAC 61.463 72.222 0.00 0.00 40.87 5.01
5373 5708 4.200283 CAGCGCGAGAGGAGACCC 62.200 72.222 12.10 0.00 0.00 4.46
5374 5709 4.200283 CCAGCGCGAGAGGAGACC 62.200 72.222 12.10 0.00 0.00 3.85
5375 5710 4.863925 GCCAGCGCGAGAGGAGAC 62.864 72.222 12.10 0.00 0.00 3.36
5395 5730 4.575973 ATCCCCATCCTGCAGCGC 62.576 66.667 8.66 0.00 0.00 5.92
5396 5731 2.281345 GATCCCCATCCTGCAGCG 60.281 66.667 8.66 1.56 0.00 5.18
5397 5732 1.072852 GAGATCCCCATCCTGCAGC 59.927 63.158 8.66 0.00 0.00 5.25
5398 5733 1.370437 CGAGATCCCCATCCTGCAG 59.630 63.158 6.78 6.78 0.00 4.41
5399 5734 1.383109 ACGAGATCCCCATCCTGCA 60.383 57.895 0.00 0.00 0.00 4.41
5400 5735 1.070445 CACGAGATCCCCATCCTGC 59.930 63.158 0.00 0.00 0.00 4.85
5401 5736 1.750930 CCACGAGATCCCCATCCTG 59.249 63.158 0.00 0.00 0.00 3.86
5402 5737 2.143419 GCCACGAGATCCCCATCCT 61.143 63.158 0.00 0.00 0.00 3.24
5403 5738 2.427753 GCCACGAGATCCCCATCC 59.572 66.667 0.00 0.00 0.00 3.51
5404 5739 2.029666 CGCCACGAGATCCCCATC 59.970 66.667 0.00 0.00 0.00 3.51
5405 5740 2.367202 AACGCCACGAGATCCCCAT 61.367 57.895 0.00 0.00 0.00 4.00
5406 5741 3.000819 AACGCCACGAGATCCCCA 61.001 61.111 0.00 0.00 0.00 4.96
5407 5742 2.511600 CAACGCCACGAGATCCCC 60.512 66.667 0.00 0.00 0.00 4.81
5408 5743 2.511600 CCAACGCCACGAGATCCC 60.512 66.667 0.00 0.00 0.00 3.85
5409 5744 2.511600 CCCAACGCCACGAGATCC 60.512 66.667 0.00 0.00 0.00 3.36
5410 5745 3.195698 GCCCAACGCCACGAGATC 61.196 66.667 0.00 0.00 0.00 2.75
5411 5746 3.958147 CTGCCCAACGCCACGAGAT 62.958 63.158 0.00 0.00 36.24 2.75
5412 5747 4.680237 CTGCCCAACGCCACGAGA 62.680 66.667 0.00 0.00 36.24 4.04
5443 5778 4.711949 AGGGCACAAGGCTGCTCG 62.712 66.667 0.00 0.00 43.04 5.03
5444 5779 3.060615 CAGGGCACAAGGCTGCTC 61.061 66.667 0.00 0.00 44.01 4.26
5445 5780 4.673375 CCAGGGCACAAGGCTGCT 62.673 66.667 0.00 0.00 44.01 4.24
5451 5786 4.641645 TCCACGCCAGGGCACAAG 62.642 66.667 11.42 0.00 42.06 3.16
5452 5787 4.641645 CTCCACGCCAGGGCACAA 62.642 66.667 11.42 0.00 42.06 3.33
5464 5799 4.394712 CAGGACCACCGCCTCCAC 62.395 72.222 0.00 0.00 41.83 4.02
5467 5802 4.767255 CAGCAGGACCACCGCCTC 62.767 72.222 0.00 0.00 41.83 4.70
5487 5822 3.730761 CACTGCAGGTCGCCAAGC 61.731 66.667 19.93 3.23 41.33 4.01
5488 5823 3.052082 CCACTGCAGGTCGCCAAG 61.052 66.667 19.93 0.00 41.33 3.61
5489 5824 3.414136 AACCACTGCAGGTCGCCAA 62.414 57.895 19.93 0.00 42.25 4.52
5490 5825 3.825160 GAACCACTGCAGGTCGCCA 62.825 63.158 19.93 0.00 42.25 5.69
5491 5826 3.050275 GAACCACTGCAGGTCGCC 61.050 66.667 19.93 0.04 42.25 5.54
5492 5827 3.414700 CGAACCACTGCAGGTCGC 61.415 66.667 19.93 3.49 42.25 5.19
5493 5828 2.738521 CCGAACCACTGCAGGTCG 60.739 66.667 19.93 19.15 42.25 4.79
5494 5829 3.050275 GCCGAACCACTGCAGGTC 61.050 66.667 19.93 8.64 42.25 3.85
5495 5830 4.988598 CGCCGAACCACTGCAGGT 62.989 66.667 19.93 5.02 45.91 4.00
5562 5897 0.312416 GGATCCACTCCGTCAGATCG 59.688 60.000 6.95 0.00 36.75 3.69
5571 5906 1.447643 CACCATCCGGATCCACTCC 59.552 63.158 15.88 0.00 41.07 3.85
5572 5907 1.048724 TCCACCATCCGGATCCACTC 61.049 60.000 15.88 0.00 35.59 3.51
5573 5908 1.002921 TCCACCATCCGGATCCACT 59.997 57.895 15.88 0.00 35.59 4.00
5574 5909 1.447643 CTCCACCATCCGGATCCAC 59.552 63.158 15.88 0.00 35.59 4.02
5575 5910 1.766059 CCTCCACCATCCGGATCCA 60.766 63.158 15.88 0.00 35.59 3.41
5576 5911 1.766461 ACCTCCACCATCCGGATCC 60.766 63.158 15.88 0.00 35.59 3.36
5577 5912 1.447643 CACCTCCACCATCCGGATC 59.552 63.158 15.88 0.00 35.59 3.36
5578 5913 2.746375 GCACCTCCACCATCCGGAT 61.746 63.158 12.38 12.38 35.59 4.18
5579 5914 3.399181 GCACCTCCACCATCCGGA 61.399 66.667 6.61 6.61 35.59 5.14
5580 5915 3.391665 GAGCACCTCCACCATCCGG 62.392 68.421 0.00 0.00 38.77 5.14
5581 5916 2.187946 GAGCACCTCCACCATCCG 59.812 66.667 0.00 0.00 0.00 4.18
5582 5917 1.222936 CAGAGCACCTCCACCATCC 59.777 63.158 0.00 0.00 0.00 3.51
5583 5918 1.222936 CCAGAGCACCTCCACCATC 59.777 63.158 0.00 0.00 0.00 3.51
5584 5919 2.976490 GCCAGAGCACCTCCACCAT 61.976 63.158 0.00 0.00 39.53 3.55
5585 5920 3.640407 GCCAGAGCACCTCCACCA 61.640 66.667 0.00 0.00 39.53 4.17
5586 5921 4.767255 CGCCAGAGCACCTCCACC 62.767 72.222 0.00 0.00 39.83 4.61
5587 5922 4.767255 CCGCCAGAGCACCTCCAC 62.767 72.222 0.00 0.00 39.83 4.02
5590 5925 4.828925 GAGCCGCCAGAGCACCTC 62.829 72.222 0.00 0.00 39.83 3.85
5592 5927 4.400961 AAGAGCCGCCAGAGCACC 62.401 66.667 0.00 0.00 39.83 5.01
5593 5928 3.123620 CAAGAGCCGCCAGAGCAC 61.124 66.667 0.00 0.00 39.83 4.40
5594 5929 4.399395 CCAAGAGCCGCCAGAGCA 62.399 66.667 0.00 0.00 39.83 4.26
5596 5931 4.399395 TGCCAAGAGCCGCCAGAG 62.399 66.667 0.00 0.00 42.71 3.35
5597 5932 4.399395 CTGCCAAGAGCCGCCAGA 62.399 66.667 0.00 0.00 42.71 3.86
5602 5937 3.515286 CCATGCTGCCAAGAGCCG 61.515 66.667 0.00 0.00 42.71 5.52
5603 5938 1.453762 GATCCATGCTGCCAAGAGCC 61.454 60.000 0.00 0.00 42.71 4.70
5604 5939 1.453762 GGATCCATGCTGCCAAGAGC 61.454 60.000 6.95 0.00 44.14 4.09
5605 5940 1.164662 CGGATCCATGCTGCCAAGAG 61.165 60.000 13.41 0.00 0.00 2.85
5606 5941 1.153107 CGGATCCATGCTGCCAAGA 60.153 57.895 13.41 0.00 0.00 3.02
5607 5942 2.191513 CCGGATCCATGCTGCCAAG 61.192 63.158 13.41 0.00 0.00 3.61
5608 5943 2.124193 CCGGATCCATGCTGCCAA 60.124 61.111 13.41 0.00 0.00 4.52
5609 5944 4.881440 GCCGGATCCATGCTGCCA 62.881 66.667 13.41 0.00 0.00 4.92
5612 5947 4.552365 ACCGCCGGATCCATGCTG 62.552 66.667 11.71 12.33 0.00 4.41
5613 5948 3.797353 AACCGCCGGATCCATGCT 61.797 61.111 11.71 0.00 0.00 3.79
5614 5949 3.585990 CAACCGCCGGATCCATGC 61.586 66.667 11.71 12.74 0.00 4.06
5615 5950 2.901840 CCAACCGCCGGATCCATG 60.902 66.667 11.71 2.95 0.00 3.66
5616 5951 4.189580 CCCAACCGCCGGATCCAT 62.190 66.667 11.71 0.00 0.00 3.41
5642 5977 3.080121 AAGAGCCAGGAGCCTCCG 61.080 66.667 4.80 0.16 45.47 4.63
5643 5978 2.907236 GAAGAGCCAGGAGCCTCC 59.093 66.667 1.26 1.26 45.47 4.30
5644 5979 2.498726 CGAAGAGCCAGGAGCCTC 59.501 66.667 0.00 0.00 45.47 4.70
5645 5980 3.080121 CCGAAGAGCCAGGAGCCT 61.080 66.667 0.00 0.00 45.47 4.58
5646 5981 4.847444 GCCGAAGAGCCAGGAGCC 62.847 72.222 0.00 0.00 45.47 4.70
5648 5983 4.521062 CCGCCGAAGAGCCAGGAG 62.521 72.222 0.00 0.00 0.00 3.69
5670 6005 2.123428 CCACAATAGCAGCAGGGGC 61.123 63.158 0.00 0.00 41.61 5.80
5671 6006 2.123428 GCCACAATAGCAGCAGGGG 61.123 63.158 0.00 0.00 0.00 4.79
5672 6007 1.077212 AGCCACAATAGCAGCAGGG 60.077 57.895 0.00 0.00 0.00 4.45
5673 6008 0.679002 ACAGCCACAATAGCAGCAGG 60.679 55.000 0.00 0.00 0.00 4.85
5674 6009 0.450583 CACAGCCACAATAGCAGCAG 59.549 55.000 0.00 0.00 0.00 4.24
5675 6010 0.961857 CCACAGCCACAATAGCAGCA 60.962 55.000 0.00 0.00 0.00 4.41
5676 6011 1.805254 CCACAGCCACAATAGCAGC 59.195 57.895 0.00 0.00 0.00 5.25
5677 6012 0.961857 TGCCACAGCCACAATAGCAG 60.962 55.000 0.00 0.00 38.69 4.24
5678 6013 0.961857 CTGCCACAGCCACAATAGCA 60.962 55.000 0.00 0.00 38.69 3.49
5679 6014 0.677731 TCTGCCACAGCCACAATAGC 60.678 55.000 0.00 0.00 38.69 2.97
5680 6015 1.674441 CATCTGCCACAGCCACAATAG 59.326 52.381 0.00 0.00 38.69 1.73
5681 6016 1.004628 ACATCTGCCACAGCCACAATA 59.995 47.619 0.00 0.00 38.69 1.90
5682 6017 0.251474 ACATCTGCCACAGCCACAAT 60.251 50.000 0.00 0.00 38.69 2.71
5683 6018 1.151221 ACATCTGCCACAGCCACAA 59.849 52.632 0.00 0.00 38.69 3.33
5684 6019 1.601477 CACATCTGCCACAGCCACA 60.601 57.895 0.00 0.00 38.69 4.17
5685 6020 3.271014 CACATCTGCCACAGCCAC 58.729 61.111 0.00 0.00 38.69 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.