Multiple sequence alignment - TraesCS3A01G334000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G334000 chr3A 100.000 5386 0 0 1 5386 579372335 579377720 0.000000e+00 9947.0
1 TraesCS3A01G334000 chr3A 88.636 88 9 1 512 598 748858926 748858839 7.380000e-19 106.0
2 TraesCS3A01G334000 chr3A 91.111 45 4 0 599 643 489193133 489193177 1.620000e-05 62.1
3 TraesCS3A01G334000 chr3B 91.294 2550 145 36 2876 5386 576447562 576450073 0.000000e+00 3408.0
4 TraesCS3A01G334000 chr3B 91.971 2242 93 30 655 2862 576445389 576447577 0.000000e+00 3062.0
5 TraesCS3A01G334000 chr3B 88.258 264 9 6 1 263 576444982 576445224 4.080000e-76 296.0
6 TraesCS3A01G334000 chr3B 90.588 170 11 3 345 510 576445223 576445391 2.530000e-53 220.0
7 TraesCS3A01G334000 chr3B 90.909 88 7 1 512 598 173382265 173382178 3.410000e-22 117.0
8 TraesCS3A01G334000 chr3B 89.535 86 8 1 512 596 122696191 122696106 2.050000e-19 108.0
9 TraesCS3A01G334000 chr3B 91.111 45 4 0 599 643 478078403 478078447 1.620000e-05 62.1
10 TraesCS3A01G334000 chr3D 91.807 2258 98 40 640 2862 439673273 439675478 0.000000e+00 3064.0
11 TraesCS3A01G334000 chr3D 92.303 1832 99 20 2876 4681 439675463 439677278 0.000000e+00 2564.0
12 TraesCS3A01G334000 chr3D 91.777 754 23 19 2112 2862 141540720 141540003 0.000000e+00 1013.0
13 TraesCS3A01G334000 chr3D 91.114 754 27 20 2112 2862 141546904 141546188 0.000000e+00 985.0
14 TraesCS3A01G334000 chr3D 91.171 555 26 14 2311 2862 141563697 141563163 0.000000e+00 732.0
15 TraesCS3A01G334000 chr3D 87.921 505 26 14 1 492 439672789 439673271 3.640000e-156 562.0
16 TraesCS3A01G334000 chr3D 88.817 465 37 6 4928 5386 439677445 439677900 1.690000e-154 556.0
17 TraesCS3A01G334000 chr3D 87.123 497 40 7 2876 3351 567166657 567166164 4.750000e-150 542.0
18 TraesCS3A01G334000 chr3D 91.935 248 9 1 1973 2220 567167165 567166929 2.400000e-88 337.0
19 TraesCS3A01G334000 chr3D 85.870 92 12 1 507 597 315475928 315476019 4.440000e-16 97.1
20 TraesCS3A01G334000 chr3D 88.889 54 5 1 596 648 261534226 261534279 1.250000e-06 65.8
21 TraesCS3A01G334000 chr7D 91.908 1384 83 11 2876 4236 141533061 141534438 0.000000e+00 1908.0
22 TraesCS3A01G334000 chr7D 93.651 1008 55 8 3232 4236 141538852 141539853 0.000000e+00 1498.0
23 TraesCS3A01G334000 chr7D 93.651 1008 55 8 3232 4236 141540658 141541659 0.000000e+00 1498.0
24 TraesCS3A01G334000 chr7D 93.353 1008 50 13 3232 4236 141537052 141538045 0.000000e+00 1474.0
25 TraesCS3A01G334000 chr7D 93.155 1008 59 9 3232 4236 141535245 141536245 0.000000e+00 1471.0
26 TraesCS3A01G334000 chr7D 92.956 1008 62 7 3232 4236 141542465 141543466 0.000000e+00 1459.0
27 TraesCS3A01G334000 chr7D 95.261 211 9 1 1973 2183 596365396 596365605 3.110000e-87 333.0
28 TraesCS3A01G334000 chr7D 94.787 211 10 1 1973 2183 141532553 141532762 1.450000e-85 327.0
29 TraesCS3A01G334000 chr5D 92.689 1272 65 11 2876 4124 28019909 28021175 0.000000e+00 1808.0
30 TraesCS3A01G334000 chr5D 87.379 309 21 12 2557 2862 28019631 28019924 6.680000e-89 339.0
31 TraesCS3A01G334000 chr5D 94.787 211 10 1 1973 2183 28019401 28019610 1.450000e-85 327.0
32 TraesCS3A01G334000 chr5D 97.436 39 1 0 599 637 98297059 98297021 3.480000e-07 67.6
33 TraesCS3A01G334000 chr1D 91.247 754 32 19 2112 2862 46647748 46647026 0.000000e+00 996.0
34 TraesCS3A01G334000 chr1D 87.379 309 21 12 2557 2862 288349284 288349577 6.680000e-89 339.0
35 TraesCS3A01G334000 chr1D 95.261 211 9 1 1973 2183 288349054 288349263 3.110000e-87 333.0
36 TraesCS3A01G334000 chr1D 93.258 89 6 0 1973 2061 26569548 26569460 1.220000e-26 132.0
37 TraesCS3A01G334000 chr6D 87.379 309 21 12 2557 2862 56369430 56369723 6.680000e-89 339.0
38 TraesCS3A01G334000 chr6D 90.726 248 12 3 1973 2220 56369200 56369436 2.420000e-83 320.0
39 TraesCS3A01G334000 chr6D 97.297 37 1 0 599 635 65054614 65054650 4.500000e-06 63.9
40 TraesCS3A01G334000 chr1A 91.860 86 6 1 511 595 584993937 584994022 9.480000e-23 119.0
41 TraesCS3A01G334000 chr4B 89.412 85 8 1 512 595 149500478 149500562 7.380000e-19 106.0
42 TraesCS3A01G334000 chr4B 100.000 38 0 0 599 636 124049982 124050019 2.690000e-08 71.3
43 TraesCS3A01G334000 chr4D 87.640 89 10 1 509 596 260686481 260686393 9.540000e-18 102.0
44 TraesCS3A01G334000 chr2D 88.372 86 8 2 509 592 154890110 154890195 9.540000e-18 102.0
45 TraesCS3A01G334000 chr2D 97.297 37 1 0 599 635 621952119 621952083 4.500000e-06 63.9
46 TraesCS3A01G334000 chr4A 88.750 80 8 1 517 595 670633450 670633529 4.440000e-16 97.1
47 TraesCS3A01G334000 chr5A 97.436 39 1 0 599 637 104618601 104618639 3.480000e-07 67.6
48 TraesCS3A01G334000 chr5B 97.297 37 1 0 599 635 107735575 107735539 4.500000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G334000 chr3A 579372335 579377720 5385 False 9947.000000 9947 100.000000 1 5386 1 chr3A.!!$F2 5385
1 TraesCS3A01G334000 chr3B 576444982 576450073 5091 False 1746.500000 3408 90.527750 1 5386 4 chr3B.!!$F2 5385
2 TraesCS3A01G334000 chr3D 439672789 439677900 5111 False 1686.500000 3064 90.212000 1 5386 4 chr3D.!!$F3 5385
3 TraesCS3A01G334000 chr3D 141540003 141540720 717 True 1013.000000 1013 91.777000 2112 2862 1 chr3D.!!$R1 750
4 TraesCS3A01G334000 chr3D 141546188 141546904 716 True 985.000000 985 91.114000 2112 2862 1 chr3D.!!$R2 750
5 TraesCS3A01G334000 chr3D 141563163 141563697 534 True 732.000000 732 91.171000 2311 2862 1 chr3D.!!$R3 551
6 TraesCS3A01G334000 chr3D 567166164 567167165 1001 True 439.500000 542 89.529000 1973 3351 2 chr3D.!!$R4 1378
7 TraesCS3A01G334000 chr7D 141532553 141543466 10913 False 1376.428571 1908 93.351571 1973 4236 7 chr7D.!!$F2 2263
8 TraesCS3A01G334000 chr5D 28019401 28021175 1774 False 824.666667 1808 91.618333 1973 4124 3 chr5D.!!$F1 2151
9 TraesCS3A01G334000 chr1D 46647026 46647748 722 True 996.000000 996 91.247000 2112 2862 1 chr1D.!!$R2 750
10 TraesCS3A01G334000 chr1D 288349054 288349577 523 False 336.000000 339 91.320000 1973 2862 2 chr1D.!!$F1 889
11 TraesCS3A01G334000 chr6D 56369200 56369723 523 False 329.500000 339 89.052500 1973 2862 2 chr6D.!!$F2 889

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 370 0.108945 GTCTCCAGGCATTTTGCTGC 60.109 55.0 0.00 0.00 44.28 5.25 F
1856 1999 0.036010 CGGTTCATCAGGCTTCTGGT 60.036 55.0 0.00 0.00 38.96 4.00 F
1953 2096 0.465097 ATAGTGGTCATGCAGCAGCC 60.465 55.0 0.00 3.82 41.13 4.85 F
2905 3053 0.178992 TGTTGGGGCTTCAGAACTGG 60.179 55.0 1.93 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2262 2405 0.108329 GGTCGTCCGTCACCATCAAT 60.108 55.0 0.00 0.00 32.33 2.57 R
2745 2891 0.316204 AACTCTGGCTGTTTGCATGC 59.684 50.0 11.82 11.82 45.15 4.06 R
3018 3184 0.618458 GCCCAGATACCACAGGTTCA 59.382 55.0 0.00 0.00 37.09 3.18 R
4865 13208 0.035881 ACTCACAGTGGACCAGCATG 59.964 55.0 0.00 0.00 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 81 2.818432 GGCAACATCAGGGATGATCATC 59.182 50.000 24.90 24.90 42.09 2.92
98 108 6.349944 GCATGTTTGGAATCTTCTTGACAGAT 60.350 38.462 0.00 0.00 31.94 2.90
99 109 6.808008 TGTTTGGAATCTTCTTGACAGATC 57.192 37.500 0.00 0.00 30.19 2.75
100 110 5.707298 TGTTTGGAATCTTCTTGACAGATCC 59.293 40.000 0.00 0.00 30.19 3.36
101 111 5.503634 TTGGAATCTTCTTGACAGATCCA 57.496 39.130 0.00 0.00 31.51 3.41
116 126 0.904649 ATCCACGGTTCTGCAGATGA 59.095 50.000 19.04 0.00 0.00 2.92
134 144 6.279123 CAGATGACAAGAAGAGCTGCTATTA 58.721 40.000 9.82 0.00 0.00 0.98
166 176 2.101917 TGAGGTTACGCCAAGGTATAGC 59.898 50.000 0.00 0.00 40.61 2.97
167 177 2.101917 GAGGTTACGCCAAGGTATAGCA 59.898 50.000 4.48 0.00 40.61 3.49
168 178 2.502538 AGGTTACGCCAAGGTATAGCAA 59.497 45.455 4.48 0.00 40.61 3.91
263 341 0.955428 TCAACGGATGCAGCAGGTTC 60.955 55.000 7.11 0.00 0.00 3.62
264 342 1.073025 AACGGATGCAGCAGGTTCA 59.927 52.632 7.11 0.00 0.00 3.18
265 343 0.957395 AACGGATGCAGCAGGTTCAG 60.957 55.000 7.11 0.00 0.00 3.02
266 344 1.376424 CGGATGCAGCAGGTTCAGT 60.376 57.895 3.51 0.00 0.00 3.41
267 345 1.642037 CGGATGCAGCAGGTTCAGTG 61.642 60.000 3.51 0.00 0.00 3.66
268 346 0.607489 GGATGCAGCAGGTTCAGTGT 60.607 55.000 3.51 0.00 0.00 3.55
269 347 0.801251 GATGCAGCAGGTTCAGTGTC 59.199 55.000 0.00 0.00 0.00 3.67
270 348 0.607489 ATGCAGCAGGTTCAGTGTCC 60.607 55.000 0.00 0.00 0.00 4.02
271 349 1.227943 GCAGCAGGTTCAGTGTCCA 60.228 57.895 9.10 0.00 0.00 4.02
272 350 1.510480 GCAGCAGGTTCAGTGTCCAC 61.510 60.000 9.10 0.00 0.00 4.02
273 351 1.069765 AGCAGGTTCAGTGTCCACG 59.930 57.895 9.10 0.00 36.20 4.94
274 352 1.227556 GCAGGTTCAGTGTCCACGT 60.228 57.895 9.10 0.00 36.20 4.49
275 353 1.222115 GCAGGTTCAGTGTCCACGTC 61.222 60.000 9.10 0.00 36.20 4.34
276 354 0.389391 CAGGTTCAGTGTCCACGTCT 59.611 55.000 9.10 0.00 36.20 4.18
277 355 0.674534 AGGTTCAGTGTCCACGTCTC 59.325 55.000 9.10 0.00 36.20 3.36
278 356 0.319641 GGTTCAGTGTCCACGTCTCC 60.320 60.000 0.00 0.00 36.20 3.71
279 357 0.387929 GTTCAGTGTCCACGTCTCCA 59.612 55.000 0.00 0.00 36.20 3.86
280 358 0.673985 TTCAGTGTCCACGTCTCCAG 59.326 55.000 0.00 0.00 36.20 3.86
281 359 1.179174 TCAGTGTCCACGTCTCCAGG 61.179 60.000 0.00 0.00 36.20 4.45
282 360 2.048127 GTGTCCACGTCTCCAGGC 60.048 66.667 0.00 0.00 0.00 4.85
283 361 2.523168 TGTCCACGTCTCCAGGCA 60.523 61.111 0.00 0.00 0.00 4.75
284 362 1.913262 TGTCCACGTCTCCAGGCAT 60.913 57.895 0.00 0.00 0.00 4.40
285 363 1.296715 GTCCACGTCTCCAGGCATT 59.703 57.895 0.00 0.00 0.00 3.56
286 364 0.321653 GTCCACGTCTCCAGGCATTT 60.322 55.000 0.00 0.00 0.00 2.32
287 365 0.400213 TCCACGTCTCCAGGCATTTT 59.600 50.000 0.00 0.00 0.00 1.82
288 366 0.523072 CCACGTCTCCAGGCATTTTG 59.477 55.000 0.00 0.00 0.00 2.44
289 367 0.109597 CACGTCTCCAGGCATTTTGC 60.110 55.000 0.00 0.00 44.08 3.68
290 368 0.250901 ACGTCTCCAGGCATTTTGCT 60.251 50.000 0.00 0.00 44.28 3.91
291 369 0.169672 CGTCTCCAGGCATTTTGCTG 59.830 55.000 0.00 0.00 44.28 4.41
292 370 0.108945 GTCTCCAGGCATTTTGCTGC 60.109 55.000 0.00 0.00 44.28 5.25
310 388 2.272146 CCCCCAGTATGCAGCGTT 59.728 61.111 0.00 0.00 31.97 4.84
311 389 1.378514 CCCCCAGTATGCAGCGTTT 60.379 57.895 0.00 0.00 31.97 3.60
312 390 1.656818 CCCCCAGTATGCAGCGTTTG 61.657 60.000 0.00 0.00 31.97 2.93
313 391 0.960364 CCCCAGTATGCAGCGTTTGT 60.960 55.000 0.00 0.00 31.97 2.83
314 392 0.881118 CCCAGTATGCAGCGTTTGTT 59.119 50.000 0.00 0.00 31.97 2.83
315 393 1.401409 CCCAGTATGCAGCGTTTGTTG 60.401 52.381 0.00 0.00 31.97 3.33
316 394 1.266718 CCAGTATGCAGCGTTTGTTGT 59.733 47.619 0.00 0.00 31.97 3.32
317 395 2.287547 CCAGTATGCAGCGTTTGTTGTT 60.288 45.455 0.00 0.00 31.97 2.83
318 396 3.058570 CCAGTATGCAGCGTTTGTTGTTA 60.059 43.478 0.00 0.00 31.97 2.41
319 397 4.379394 CCAGTATGCAGCGTTTGTTGTTAT 60.379 41.667 0.00 0.00 31.97 1.89
320 398 4.788100 CAGTATGCAGCGTTTGTTGTTATC 59.212 41.667 0.00 0.00 0.00 1.75
321 399 4.695455 AGTATGCAGCGTTTGTTGTTATCT 59.305 37.500 0.00 0.00 0.00 1.98
322 400 3.980646 TGCAGCGTTTGTTGTTATCTT 57.019 38.095 0.00 0.00 0.00 2.40
323 401 3.884169 TGCAGCGTTTGTTGTTATCTTC 58.116 40.909 0.00 0.00 0.00 2.87
324 402 3.313803 TGCAGCGTTTGTTGTTATCTTCA 59.686 39.130 0.00 0.00 0.00 3.02
325 403 4.023279 TGCAGCGTTTGTTGTTATCTTCAT 60.023 37.500 0.00 0.00 0.00 2.57
326 404 4.321745 GCAGCGTTTGTTGTTATCTTCATG 59.678 41.667 0.00 0.00 0.00 3.07
327 405 4.321745 CAGCGTTTGTTGTTATCTTCATGC 59.678 41.667 0.00 0.00 0.00 4.06
328 406 4.216257 AGCGTTTGTTGTTATCTTCATGCT 59.784 37.500 0.00 0.00 0.00 3.79
329 407 4.321745 GCGTTTGTTGTTATCTTCATGCTG 59.678 41.667 0.00 0.00 0.00 4.41
330 408 4.321745 CGTTTGTTGTTATCTTCATGCTGC 59.678 41.667 0.00 0.00 0.00 5.25
331 409 5.464168 GTTTGTTGTTATCTTCATGCTGCT 58.536 37.500 0.00 0.00 0.00 4.24
332 410 4.690184 TGTTGTTATCTTCATGCTGCTG 57.310 40.909 0.00 0.00 0.00 4.41
333 411 4.325972 TGTTGTTATCTTCATGCTGCTGA 58.674 39.130 0.00 0.00 0.00 4.26
334 412 4.945543 TGTTGTTATCTTCATGCTGCTGAT 59.054 37.500 0.00 0.26 0.00 2.90
335 413 5.416639 TGTTGTTATCTTCATGCTGCTGATT 59.583 36.000 0.00 0.00 0.00 2.57
336 414 5.494632 TGTTATCTTCATGCTGCTGATTG 57.505 39.130 0.00 0.00 0.00 2.67
337 415 5.187687 TGTTATCTTCATGCTGCTGATTGA 58.812 37.500 0.00 4.90 0.00 2.57
338 416 5.065602 TGTTATCTTCATGCTGCTGATTGAC 59.934 40.000 0.00 0.10 0.00 3.18
339 417 3.345508 TCTTCATGCTGCTGATTGACT 57.654 42.857 0.00 0.00 0.00 3.41
340 418 3.007635 TCTTCATGCTGCTGATTGACTG 58.992 45.455 0.00 0.00 0.00 3.51
341 419 2.773993 TCATGCTGCTGATTGACTGA 57.226 45.000 0.00 0.00 0.00 3.41
342 420 3.277142 TCATGCTGCTGATTGACTGAT 57.723 42.857 0.00 0.00 0.00 2.90
343 421 3.617284 TCATGCTGCTGATTGACTGATT 58.383 40.909 0.00 0.00 0.00 2.57
344 422 4.014406 TCATGCTGCTGATTGACTGATTT 58.986 39.130 0.00 0.00 0.00 2.17
345 423 4.461431 TCATGCTGCTGATTGACTGATTTT 59.539 37.500 0.00 0.00 0.00 1.82
354 432 9.049523 TGCTGATTGACTGATTTTATGAGATAC 57.950 33.333 0.00 0.00 0.00 2.24
387 465 2.923121 TGATCCCATCTTACTTGCTGC 58.077 47.619 0.00 0.00 0.00 5.25
404 486 1.068127 CTGCCCTATGATTTTGCTGGC 59.932 52.381 0.00 0.00 37.90 4.85
517 600 7.421087 ACTCCCTCTGTAAAGAAATACTACC 57.579 40.000 0.00 0.00 0.00 3.18
518 601 7.190501 ACTCCCTCTGTAAAGAAATACTACCT 58.809 38.462 0.00 0.00 0.00 3.08
519 602 7.342541 ACTCCCTCTGTAAAGAAATACTACCTC 59.657 40.741 0.00 0.00 0.00 3.85
520 603 6.610425 TCCCTCTGTAAAGAAATACTACCTCC 59.390 42.308 0.00 0.00 0.00 4.30
521 604 6.461231 CCCTCTGTAAAGAAATACTACCTCCG 60.461 46.154 0.00 0.00 0.00 4.63
522 605 6.096564 CCTCTGTAAAGAAATACTACCTCCGT 59.903 42.308 0.00 0.00 0.00 4.69
523 606 7.093322 TCTGTAAAGAAATACTACCTCCGTC 57.907 40.000 0.00 0.00 0.00 4.79
524 607 6.096001 TCTGTAAAGAAATACTACCTCCGTCC 59.904 42.308 0.00 0.00 0.00 4.79
525 608 4.750021 AAAGAAATACTACCTCCGTCCC 57.250 45.455 0.00 0.00 0.00 4.46
526 609 3.393426 AGAAATACTACCTCCGTCCCA 57.607 47.619 0.00 0.00 0.00 4.37
527 610 3.924922 AGAAATACTACCTCCGTCCCAT 58.075 45.455 0.00 0.00 0.00 4.00
528 611 5.070823 AGAAATACTACCTCCGTCCCATA 57.929 43.478 0.00 0.00 0.00 2.74
529 612 5.461327 AGAAATACTACCTCCGTCCCATAA 58.539 41.667 0.00 0.00 0.00 1.90
530 613 6.082707 AGAAATACTACCTCCGTCCCATAAT 58.917 40.000 0.00 0.00 0.00 1.28
531 614 5.740290 AATACTACCTCCGTCCCATAATG 57.260 43.478 0.00 0.00 0.00 1.90
532 615 3.042059 ACTACCTCCGTCCCATAATGT 57.958 47.619 0.00 0.00 0.00 2.71
533 616 4.188937 ACTACCTCCGTCCCATAATGTA 57.811 45.455 0.00 0.00 0.00 2.29
534 617 4.549668 ACTACCTCCGTCCCATAATGTAA 58.450 43.478 0.00 0.00 0.00 2.41
535 618 4.587684 ACTACCTCCGTCCCATAATGTAAG 59.412 45.833 0.00 0.00 0.00 2.34
536 619 3.649843 ACCTCCGTCCCATAATGTAAGA 58.350 45.455 0.00 0.00 0.00 2.10
537 620 4.035112 ACCTCCGTCCCATAATGTAAGAA 58.965 43.478 0.00 0.00 0.00 2.52
538 621 4.141779 ACCTCCGTCCCATAATGTAAGAAC 60.142 45.833 0.00 0.00 0.00 3.01
539 622 4.049186 CTCCGTCCCATAATGTAAGAACG 58.951 47.826 0.00 0.00 0.00 3.95
540 623 3.448301 TCCGTCCCATAATGTAAGAACGT 59.552 43.478 0.00 0.00 0.00 3.99
541 624 4.081531 TCCGTCCCATAATGTAAGAACGTT 60.082 41.667 0.00 0.00 38.41 3.99
542 625 4.632688 CCGTCCCATAATGTAAGAACGTTT 59.367 41.667 0.46 0.00 36.28 3.60
543 626 5.122711 CCGTCCCATAATGTAAGAACGTTTT 59.877 40.000 0.46 0.00 36.28 2.43
544 627 6.348704 CCGTCCCATAATGTAAGAACGTTTTT 60.349 38.462 9.22 9.22 36.28 1.94
545 628 7.148440 CCGTCCCATAATGTAAGAACGTTTTTA 60.148 37.037 0.46 4.46 36.28 1.52
546 629 8.392612 CGTCCCATAATGTAAGAACGTTTTTAT 58.607 33.333 13.65 2.19 36.28 1.40
585 668 4.494597 AACGTTCTTGTATTATGCGACG 57.505 40.909 0.00 0.00 35.59 5.12
586 669 2.855963 ACGTTCTTGTATTATGCGACGG 59.144 45.455 0.00 0.00 33.95 4.79
587 670 3.110358 CGTTCTTGTATTATGCGACGGA 58.890 45.455 0.00 0.00 0.00 4.69
588 671 3.179795 CGTTCTTGTATTATGCGACGGAG 59.820 47.826 0.00 0.00 0.00 4.63
589 672 3.364889 TCTTGTATTATGCGACGGAGG 57.635 47.619 0.00 0.00 0.00 4.30
590 673 2.035449 TCTTGTATTATGCGACGGAGGG 59.965 50.000 0.00 0.00 0.00 4.30
591 674 1.694844 TGTATTATGCGACGGAGGGA 58.305 50.000 0.00 0.00 0.00 4.20
592 675 1.611977 TGTATTATGCGACGGAGGGAG 59.388 52.381 0.00 0.00 0.00 4.30
593 676 1.612463 GTATTATGCGACGGAGGGAGT 59.388 52.381 0.00 0.00 0.00 3.85
594 677 1.991121 ATTATGCGACGGAGGGAGTA 58.009 50.000 0.00 0.00 0.00 2.59
595 678 1.991121 TTATGCGACGGAGGGAGTAT 58.009 50.000 0.00 0.00 0.00 2.12
596 679 2.865119 TATGCGACGGAGGGAGTATA 57.135 50.000 0.00 0.00 0.00 1.47
597 680 1.991121 ATGCGACGGAGGGAGTATAA 58.009 50.000 0.00 0.00 0.00 0.98
598 681 1.315690 TGCGACGGAGGGAGTATAAG 58.684 55.000 0.00 0.00 0.00 1.73
599 682 1.134007 TGCGACGGAGGGAGTATAAGA 60.134 52.381 0.00 0.00 0.00 2.10
600 683 2.161030 GCGACGGAGGGAGTATAAGAT 58.839 52.381 0.00 0.00 0.00 2.40
601 684 2.162008 GCGACGGAGGGAGTATAAGATC 59.838 54.545 0.00 0.00 0.00 2.75
602 685 3.677190 CGACGGAGGGAGTATAAGATCT 58.323 50.000 0.00 0.00 0.00 2.75
603 686 4.829968 CGACGGAGGGAGTATAAGATCTA 58.170 47.826 0.00 0.00 0.00 1.98
604 687 5.243981 CGACGGAGGGAGTATAAGATCTAA 58.756 45.833 0.00 0.00 0.00 2.10
605 688 5.704515 CGACGGAGGGAGTATAAGATCTAAA 59.295 44.000 0.00 0.00 0.00 1.85
606 689 6.374894 CGACGGAGGGAGTATAAGATCTAAAT 59.625 42.308 0.00 0.00 0.00 1.40
607 690 7.551974 CGACGGAGGGAGTATAAGATCTAAATA 59.448 40.741 0.00 0.00 0.00 1.40
608 691 8.578448 ACGGAGGGAGTATAAGATCTAAATAC 57.422 38.462 15.58 15.58 0.00 1.89
609 692 8.392479 ACGGAGGGAGTATAAGATCTAAATACT 58.608 37.037 21.93 21.93 38.75 2.12
610 693 8.895737 CGGAGGGAGTATAAGATCTAAATACTC 58.104 40.741 29.46 29.46 45.92 2.59
632 715 8.485578 ACTCCTATATTTCTTTACAGAGGGAG 57.514 38.462 0.00 0.00 40.60 4.30
633 716 8.068733 ACTCCTATATTTCTTTACAGAGGGAGT 58.931 37.037 0.00 0.00 42.25 3.85
634 717 9.589461 CTCCTATATTTCTTTACAGAGGGAGTA 57.411 37.037 0.00 0.00 33.12 2.59
635 718 9.364653 TCCTATATTTCTTTACAGAGGGAGTAC 57.635 37.037 0.00 0.00 0.00 2.73
636 719 9.369672 CCTATATTTCTTTACAGAGGGAGTACT 57.630 37.037 0.00 0.00 0.00 2.73
641 724 8.896722 TTTCTTTACAGAGGGAGTACTCTATT 57.103 34.615 21.88 8.26 45.71 1.73
642 725 9.986157 TTTCTTTACAGAGGGAGTACTCTATTA 57.014 33.333 21.88 3.53 45.71 0.98
648 731 8.840200 ACAGAGGGAGTACTCTATTATTTTCA 57.160 34.615 21.88 0.00 45.71 2.69
649 732 8.697292 ACAGAGGGAGTACTCTATTATTTTCAC 58.303 37.037 21.88 1.16 45.71 3.18
650 733 8.919145 CAGAGGGAGTACTCTATTATTTTCACT 58.081 37.037 21.88 0.00 45.71 3.41
653 736 9.939424 AGGGAGTACTCTATTATTTTCACTAGT 57.061 33.333 21.88 0.00 0.00 2.57
654 737 9.968870 GGGAGTACTCTATTATTTTCACTAGTG 57.031 37.037 21.88 17.17 0.00 2.74
735 818 4.262377 CCACAGAATCATCGGCTCTCTTAT 60.262 45.833 0.00 0.00 0.00 1.73
757 840 0.237235 CACACCGTGAAAATGACCCG 59.763 55.000 5.28 0.00 35.23 5.28
765 848 3.128589 CGTGAAAATGACCCGGATGAATT 59.871 43.478 0.73 0.00 0.00 2.17
781 864 1.275856 GAATTTGCCATTGGTGCCTGA 59.724 47.619 4.26 0.00 0.00 3.86
785 868 1.077501 GCCATTGGTGCCTGAGCTA 60.078 57.895 4.26 0.00 40.80 3.32
810 893 2.137528 TCAACAGCCCGTGGAGTGA 61.138 57.895 0.00 0.00 0.00 3.41
882 965 4.270834 TCTGTTAGACAAGATACGCTCCT 58.729 43.478 0.00 0.00 0.00 3.69
925 1008 4.264380 CGTGAAACAAACCAACAAACTAGC 59.736 41.667 0.00 0.00 35.74 3.42
1399 1499 4.333926 CGTTCTTTCAGAATCTTGGGATCC 59.666 45.833 1.92 1.92 36.50 3.36
1400 1500 5.256474 GTTCTTTCAGAATCTTGGGATCCA 58.744 41.667 15.23 0.00 36.50 3.41
1471 1595 0.389025 CAGTTTGGGTGCTTTGGGAC 59.611 55.000 0.00 0.00 0.00 4.46
1513 1638 1.937108 GCGAACTGACACTGCTAGCTT 60.937 52.381 17.23 0.00 0.00 3.74
1514 1639 1.989165 CGAACTGACACTGCTAGCTTC 59.011 52.381 17.23 7.59 0.00 3.86
1515 1640 1.989165 GAACTGACACTGCTAGCTTCG 59.011 52.381 17.23 6.98 0.00 3.79
1517 1642 1.079819 TGACACTGCTAGCTTCGCC 60.080 57.895 17.23 3.32 0.00 5.54
1518 1643 1.079819 GACACTGCTAGCTTCGCCA 60.080 57.895 17.23 0.00 0.00 5.69
1519 1644 1.355066 GACACTGCTAGCTTCGCCAC 61.355 60.000 17.23 0.00 0.00 5.01
1520 1645 1.374631 CACTGCTAGCTTCGCCACA 60.375 57.895 17.23 0.00 0.00 4.17
1632 1772 5.806654 TTTTTGCTAGATTTCCTTTGGCT 57.193 34.783 0.00 0.00 0.00 4.75
1633 1773 4.789012 TTTGCTAGATTTCCTTTGGCTG 57.211 40.909 0.00 0.00 0.00 4.85
1651 1791 3.190118 GGCTGGAAGTGAAATGTTCTGAG 59.810 47.826 0.00 0.00 35.30 3.35
1684 1824 1.777878 TCCCTTTGCTGTCCAACCTTA 59.222 47.619 0.00 0.00 31.97 2.69
1838 1981 2.930040 AGTCGTTGCTGGTTTATCATCG 59.070 45.455 0.00 0.00 0.00 3.84
1856 1999 0.036010 CGGTTCATCAGGCTTCTGGT 60.036 55.000 0.00 0.00 38.96 4.00
1947 2090 5.600069 AGATGACTTCTATAGTGGTCATGCA 59.400 40.000 29.27 13.87 45.59 3.96
1953 2096 0.465097 ATAGTGGTCATGCAGCAGCC 60.465 55.000 0.00 3.82 41.13 4.85
1980 2123 0.881118 GTGGGACGACAATGCACATT 59.119 50.000 0.00 0.00 0.00 2.71
2016 2159 3.316029 CAGTGAATGGAAACTTGACTGCA 59.684 43.478 0.00 0.00 0.00 4.41
2049 2192 6.274157 TCCTACAAACACAAAGCAGAAAAA 57.726 33.333 0.00 0.00 0.00 1.94
2050 2193 6.872920 TCCTACAAACACAAAGCAGAAAAAT 58.127 32.000 0.00 0.00 0.00 1.82
2106 2249 4.081406 CCAAGTGGAATGATGAGGTTTCA 58.919 43.478 0.00 0.00 37.39 2.69
2262 2405 7.118723 AGTTCTTCATGGCATATAAAGGTTCA 58.881 34.615 0.00 0.00 0.00 3.18
2385 2528 1.590932 GACAGCAGCGGATGATTGAT 58.409 50.000 9.62 0.00 33.73 2.57
2466 2609 3.697045 TGTCTTGACGGGTTCATGTTTTT 59.303 39.130 0.00 0.00 32.84 1.94
2649 2795 3.955771 ACACCGTTGTATGTTGTTCAC 57.044 42.857 0.00 0.00 32.60 3.18
2712 2858 0.912486 GAGAAGGTATGGTGCCTGGT 59.088 55.000 0.00 0.00 36.30 4.00
2718 2864 2.849943 AGGTATGGTGCCTGGTCATTTA 59.150 45.455 0.00 0.00 34.56 1.40
2719 2865 3.117888 AGGTATGGTGCCTGGTCATTTAG 60.118 47.826 0.00 0.00 34.56 1.85
2720 2866 3.371595 GGTATGGTGCCTGGTCATTTAGT 60.372 47.826 0.00 0.00 0.00 2.24
2721 2867 2.969821 TGGTGCCTGGTCATTTAGTT 57.030 45.000 0.00 0.00 0.00 2.24
2722 2868 2.790433 TGGTGCCTGGTCATTTAGTTC 58.210 47.619 0.00 0.00 0.00 3.01
2723 2869 2.107378 TGGTGCCTGGTCATTTAGTTCA 59.893 45.455 0.00 0.00 0.00 3.18
2724 2870 3.153919 GGTGCCTGGTCATTTAGTTCAA 58.846 45.455 0.00 0.00 0.00 2.69
2725 2871 3.572255 GGTGCCTGGTCATTTAGTTCAAA 59.428 43.478 0.00 0.00 0.00 2.69
2734 2880 9.533253 CTGGTCATTTAGTTCAAATTTCAAACT 57.467 29.630 15.96 15.96 34.49 2.66
2745 2891 9.185192 GTTCAAATTTCAAACTAGTTCCTCATG 57.815 33.333 8.95 3.17 0.00 3.07
2746 2892 7.370383 TCAAATTTCAAACTAGTTCCTCATGC 58.630 34.615 8.95 0.00 0.00 4.06
2754 2900 3.441572 ACTAGTTCCTCATGCATGCAAAC 59.558 43.478 26.68 22.54 0.00 2.93
2765 2913 1.269936 GCATGCAAACAGCCAGAGTTT 60.270 47.619 14.21 0.00 44.83 2.66
2807 2955 1.408969 AAACATTGGCTGGTTTCGGT 58.591 45.000 0.00 0.00 32.00 4.69
2811 2959 2.959707 ACATTGGCTGGTTTCGGTTTTA 59.040 40.909 0.00 0.00 0.00 1.52
2815 2963 3.083293 TGGCTGGTTTCGGTTTTATACC 58.917 45.455 0.00 0.00 44.03 2.73
2842 2990 2.958355 ACACAAAATTCAGGACTGGGTG 59.042 45.455 0.00 0.00 0.00 4.61
2843 2991 1.963515 ACAAAATTCAGGACTGGGTGC 59.036 47.619 0.00 0.00 0.00 5.01
2844 2992 2.242043 CAAAATTCAGGACTGGGTGCT 58.758 47.619 0.00 0.00 33.69 4.40
2845 2993 2.206576 AAATTCAGGACTGGGTGCTC 57.793 50.000 0.00 0.00 30.21 4.26
2862 3010 5.109210 GGTGCTCCCAAAATAACTTATTGC 58.891 41.667 0.00 0.00 0.00 3.56
2863 3011 5.105351 GGTGCTCCCAAAATAACTTATTGCT 60.105 40.000 0.00 0.00 0.00 3.91
2864 3012 6.398095 GTGCTCCCAAAATAACTTATTGCTT 58.602 36.000 0.00 0.00 0.00 3.91
2865 3013 6.873605 GTGCTCCCAAAATAACTTATTGCTTT 59.126 34.615 0.00 0.00 0.00 3.51
2866 3014 7.387673 GTGCTCCCAAAATAACTTATTGCTTTT 59.612 33.333 0.00 0.00 0.00 2.27
2867 3015 7.936301 TGCTCCCAAAATAACTTATTGCTTTTT 59.064 29.630 0.00 0.00 0.00 1.94
2905 3053 0.178992 TGTTGGGGCTTCAGAACTGG 60.179 55.000 1.93 0.00 0.00 4.00
2908 3056 0.474854 TGGGGCTTCAGAACTGGGTA 60.475 55.000 1.93 0.00 0.00 3.69
2933 3081 2.291800 CCATGGGATTCATCATACCCCC 60.292 54.545 2.85 0.00 41.44 5.40
2936 3084 2.861957 TGGGATTCATCATACCCCCAAA 59.138 45.455 0.00 0.00 40.56 3.28
2940 3094 3.380471 TTCATCATACCCCCAAACCTG 57.620 47.619 0.00 0.00 0.00 4.00
2984 3150 5.976534 TGTGTGTCAAATTGTAAGTTGATGC 59.023 36.000 10.19 7.40 43.65 3.91
2987 3153 7.009999 GTGTGTCAAATTGTAAGTTGATGCAAA 59.990 33.333 10.19 0.00 43.65 3.68
2991 3157 6.636447 TCAAATTGTAAGTTGATGCAAACTCG 59.364 34.615 4.30 0.00 39.48 4.18
3003 3169 1.758783 CAAACTCGAACTTTGCAGGC 58.241 50.000 3.06 0.00 0.00 4.85
3018 3184 0.617413 CAGGCCAGAGAGTCATTGGT 59.383 55.000 5.01 0.00 34.43 3.67
3075 3241 1.004745 TGGCTTTGGGATCCTGACTTC 59.995 52.381 12.58 0.00 0.00 3.01
3095 3261 3.947626 TCGCAACTGCTTCAAAGTAAAC 58.052 40.909 0.00 0.00 39.32 2.01
3097 3263 3.482110 CGCAACTGCTTCAAAGTAAACAC 59.518 43.478 0.00 0.00 39.32 3.32
3104 3270 5.960113 TGCTTCAAAGTAAACACAACACAT 58.040 33.333 0.00 0.00 0.00 3.21
3189 3358 2.203070 CCTCCAATCCGGGAAGCG 60.203 66.667 0.00 0.00 36.27 4.68
3204 3373 0.951558 AAGCGGGGCATAATAAAGCG 59.048 50.000 0.00 0.00 0.00 4.68
3228 3397 1.743958 CAAGCTGCTCTTTCATCAGGG 59.256 52.381 1.00 0.00 31.27 4.45
3254 3423 1.070758 ACAGGTGACACGCTTGAATCT 59.929 47.619 0.00 0.00 0.00 2.40
3280 3449 6.607600 AGAATCCCACCTTAATTTCCTAAAGC 59.392 38.462 0.00 0.00 0.00 3.51
3281 3450 5.530176 TCCCACCTTAATTTCCTAAAGCT 57.470 39.130 0.00 0.00 0.00 3.74
3283 3452 7.034967 TCCCACCTTAATTTCCTAAAGCTTA 57.965 36.000 0.00 0.00 0.00 3.09
3290 3459 9.140286 CCTTAATTTCCTAAAGCTTAAAGTTGC 57.860 33.333 0.00 0.00 0.00 4.17
3291 3460 9.691362 CTTAATTTCCTAAAGCTTAAAGTTGCA 57.309 29.630 0.00 0.00 0.00 4.08
3303 3472 6.205658 AGCTTAAAGTTGCAGAGTCCTTAAAG 59.794 38.462 0.00 0.00 0.00 1.85
3357 3526 4.220602 ACAGTTGAAGATTATTTGTGGGGC 59.779 41.667 0.00 0.00 0.00 5.80
3360 3529 6.322201 CAGTTGAAGATTATTTGTGGGGCTAT 59.678 38.462 0.00 0.00 0.00 2.97
3362 3531 8.058847 AGTTGAAGATTATTTGTGGGGCTATAA 58.941 33.333 0.00 0.00 0.00 0.98
3363 3532 8.691797 GTTGAAGATTATTTGTGGGGCTATAAA 58.308 33.333 0.00 0.00 0.00 1.40
3364 3533 9.432982 TTGAAGATTATTTGTGGGGCTATAAAT 57.567 29.630 0.00 0.00 0.00 1.40
3443 5420 5.183713 CAGAAACATCCCTTGAATAAGCACA 59.816 40.000 0.00 0.00 32.40 4.57
3774 11166 9.604626 GTATTTCTGTTTTCTGACTTCATTCAG 57.395 33.333 0.00 0.00 43.93 3.02
4060 11452 3.418913 GCACGCGCACACACCATA 61.419 61.111 5.73 0.00 38.36 2.74
4092 11484 1.445582 GAACGTGTACGAGGGCAGG 60.446 63.158 11.79 0.00 43.02 4.85
4110 11502 1.783365 AGGAAAGGAAAGGTTGGCTCT 59.217 47.619 0.00 0.00 0.00 4.09
4132 11524 3.920446 TCGCAGCTCACAACTGTTAATA 58.080 40.909 0.00 0.00 37.47 0.98
4133 11525 4.503910 TCGCAGCTCACAACTGTTAATAT 58.496 39.130 0.00 0.00 37.47 1.28
4135 11527 4.346129 GCAGCTCACAACTGTTAATATGC 58.654 43.478 0.00 0.00 37.47 3.14
4141 11533 6.912591 GCTCACAACTGTTAATATGCCATAAC 59.087 38.462 0.00 0.00 33.59 1.89
4143 11535 8.341892 TCACAACTGTTAATATGCCATAACAA 57.658 30.769 0.00 0.00 40.42 2.83
4146 11538 8.413229 ACAACTGTTAATATGCCATAACAATCC 58.587 33.333 0.00 0.00 40.42 3.01
4154 11546 3.824133 TGCCATAACAATCCAGATCCAG 58.176 45.455 0.00 0.00 0.00 3.86
4161 11553 1.211212 CAATCCAGATCCAGCCTGTGA 59.789 52.381 0.00 0.00 0.00 3.58
4162 11554 1.817087 ATCCAGATCCAGCCTGTGAT 58.183 50.000 0.00 0.00 0.00 3.06
4163 11555 1.126488 TCCAGATCCAGCCTGTGATC 58.874 55.000 12.57 12.57 38.10 2.92
4319 11711 2.027625 CGGCCTTGACAAGTCGGAC 61.028 63.158 14.03 0.00 0.00 4.79
4354 11746 1.982395 CCCTCCGAGCACCTGTACA 60.982 63.158 0.00 0.00 0.00 2.90
4411 11803 0.321653 GTTCCACGGCTGGTCTCATT 60.322 55.000 0.00 0.00 38.90 2.57
4414 11806 2.045926 ACGGCTGGTCTCATTGCC 60.046 61.111 0.00 0.00 41.76 4.52
4417 11809 2.356278 GCTGGTCTCATTGCCCCA 59.644 61.111 0.00 0.00 0.00 4.96
4436 11828 1.407979 CACTGACGGTACCACTATCCC 59.592 57.143 13.54 0.00 0.00 3.85
4449 11841 3.434167 CCACTATCCCATCTGGTTCAAGG 60.434 52.174 0.00 0.00 34.77 3.61
4508 12806 5.731957 TGTGTAGCTTCCTTGTACATACA 57.268 39.130 0.00 0.00 0.00 2.29
4538 12836 5.162075 CCTCGTTTATATCCAGATTCGGAC 58.838 45.833 0.35 0.00 38.07 4.79
4636 12935 5.878627 TCTGATTGGGGAAATTGCAAATTT 58.121 33.333 1.71 4.89 0.00 1.82
4652 12951 2.914695 ATTTGCTCAAGCTTTGCCAA 57.085 40.000 15.89 12.48 42.66 4.52
4684 12983 5.154222 GTCAAATAAGCTTTGGGAGTTTCG 58.846 41.667 3.20 0.00 30.83 3.46
4701 13000 2.347697 TCGCCATATCACGCTGATAC 57.652 50.000 9.05 0.00 41.62 2.24
4754 13067 3.713288 CATGATGCATGCCCACTAAAAG 58.287 45.455 16.68 0.00 35.02 2.27
4788 13104 7.725844 AGGAGGATCACACTTCTTTTTAAACAT 59.274 33.333 0.00 0.00 36.25 2.71
4789 13105 7.809806 GGAGGATCACACTTCTTTTTAAACATG 59.190 37.037 0.00 0.00 36.25 3.21
4792 13108 8.968242 GGATCACACTTCTTTTTAAACATGTTC 58.032 33.333 12.39 0.00 0.00 3.18
4793 13109 9.515020 GATCACACTTCTTTTTAAACATGTTCA 57.485 29.630 12.39 0.00 0.00 3.18
4840 13183 0.622665 CTGAAGGGCTTCCTGATGGT 59.377 55.000 0.00 0.00 40.74 3.55
4841 13184 0.329261 TGAAGGGCTTCCTGATGGTG 59.671 55.000 0.00 0.00 40.74 4.17
4842 13185 0.329596 GAAGGGCTTCCTGATGGTGT 59.670 55.000 0.00 0.00 40.74 4.16
4843 13186 1.559682 GAAGGGCTTCCTGATGGTGTA 59.440 52.381 0.00 0.00 40.74 2.90
4844 13187 1.668826 AGGGCTTCCTGATGGTGTAA 58.331 50.000 0.00 0.00 39.96 2.41
4845 13188 1.561542 AGGGCTTCCTGATGGTGTAAG 59.438 52.381 0.00 0.00 39.96 2.34
4846 13189 1.408822 GGGCTTCCTGATGGTGTAAGG 60.409 57.143 0.00 0.00 34.23 2.69
4847 13190 1.408822 GGCTTCCTGATGGTGTAAGGG 60.409 57.143 0.00 0.00 34.23 3.95
4848 13191 1.282157 GCTTCCTGATGGTGTAAGGGT 59.718 52.381 0.00 0.00 34.23 4.34
4849 13192 2.504175 GCTTCCTGATGGTGTAAGGGTA 59.496 50.000 0.00 0.00 34.23 3.69
4850 13193 3.681874 GCTTCCTGATGGTGTAAGGGTAC 60.682 52.174 0.00 0.00 34.23 3.34
4851 13194 3.484953 TCCTGATGGTGTAAGGGTACT 57.515 47.619 0.00 0.00 34.23 2.73
4852 13195 3.371965 TCCTGATGGTGTAAGGGTACTC 58.628 50.000 0.00 0.00 34.23 2.59
4853 13196 2.434702 CCTGATGGTGTAAGGGTACTCC 59.565 54.545 0.00 0.00 42.08 3.85
4854 13197 6.129723 TCCTGATGGTGTAAGGGTACTCCT 62.130 50.000 0.00 0.00 42.19 3.69
4861 13204 2.363925 AGGGTACTCCTGGACGGC 60.364 66.667 0.00 0.00 46.07 5.68
4862 13205 2.682494 GGGTACTCCTGGACGGCA 60.682 66.667 0.00 0.00 0.00 5.69
4863 13206 2.064581 GGGTACTCCTGGACGGCAT 61.065 63.158 0.00 0.00 0.00 4.40
4864 13207 1.623542 GGGTACTCCTGGACGGCATT 61.624 60.000 0.00 0.00 0.00 3.56
4865 13208 0.179081 GGTACTCCTGGACGGCATTC 60.179 60.000 0.00 0.00 0.00 2.67
4866 13209 0.535335 GTACTCCTGGACGGCATTCA 59.465 55.000 0.00 0.00 0.00 2.57
4867 13210 1.139058 GTACTCCTGGACGGCATTCAT 59.861 52.381 0.00 0.00 0.00 2.57
4868 13211 0.107508 ACTCCTGGACGGCATTCATG 60.108 55.000 0.00 0.00 0.00 3.07
4935 13281 7.716799 AAATGATCCATTAAGTAACTTGGCA 57.283 32.000 0.00 0.00 32.43 4.92
4988 13336 9.034544 CGAGATGTTTATGAATCTGAACATGTA 57.965 33.333 0.00 0.00 41.37 2.29
5023 13371 6.142817 GCTGTATGGTTTATTTAGGCGATTG 58.857 40.000 0.00 0.00 0.00 2.67
5056 13404 3.011818 TCCACAAGCACATCACATCATC 58.988 45.455 0.00 0.00 0.00 2.92
5067 13415 5.050023 CACATCACATCATCAGATCTCAAGC 60.050 44.000 0.00 0.00 30.20 4.01
5176 13524 4.708421 AGCAATATCCACTGAACATTTGCT 59.292 37.500 0.00 0.00 42.53 3.91
5292 13640 0.097674 GCTGGCTAATGCAACACTCG 59.902 55.000 0.00 0.00 41.91 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 81 3.191162 TCAAGAAGATTCCAAACATGCCG 59.809 43.478 0.00 0.00 0.00 5.69
98 108 0.037326 GTCATCTGCAGAACCGTGGA 60.037 55.000 22.50 8.78 0.00 4.02
99 109 0.320683 TGTCATCTGCAGAACCGTGG 60.321 55.000 22.50 6.52 0.00 4.94
100 110 1.462283 CTTGTCATCTGCAGAACCGTG 59.538 52.381 22.50 14.61 0.00 4.94
101 111 1.344438 TCTTGTCATCTGCAGAACCGT 59.656 47.619 22.50 0.00 0.00 4.83
116 126 3.786635 CCGTAATAGCAGCTCTTCTTGT 58.213 45.455 0.00 0.00 0.00 3.16
166 176 9.959749 GACAAGATCCTTCTTCTAGTAGTATTG 57.040 37.037 0.00 0.00 40.28 1.90
167 177 9.930158 AGACAAGATCCTTCTTCTAGTAGTATT 57.070 33.333 0.00 0.00 40.28 1.89
168 178 9.349713 CAGACAAGATCCTTCTTCTAGTAGTAT 57.650 37.037 0.00 0.00 40.28 2.12
222 233 0.038159 AACTTTCTCAGTCGCCTCCG 60.038 55.000 0.00 0.00 32.94 4.63
223 234 1.273886 AGAACTTTCTCAGTCGCCTCC 59.726 52.381 0.00 0.00 32.94 4.30
263 341 1.290324 CCTGGAGACGTGGACACTG 59.710 63.158 0.00 0.00 0.00 3.66
264 342 2.574955 GCCTGGAGACGTGGACACT 61.575 63.158 0.00 0.00 0.00 3.55
265 343 2.048127 GCCTGGAGACGTGGACAC 60.048 66.667 0.00 0.00 0.00 3.67
266 344 1.480212 AATGCCTGGAGACGTGGACA 61.480 55.000 0.00 0.00 0.00 4.02
267 345 0.321653 AAATGCCTGGAGACGTGGAC 60.322 55.000 0.00 0.00 0.00 4.02
268 346 0.400213 AAAATGCCTGGAGACGTGGA 59.600 50.000 0.00 0.00 0.00 4.02
269 347 0.523072 CAAAATGCCTGGAGACGTGG 59.477 55.000 0.00 0.00 0.00 4.94
270 348 0.109597 GCAAAATGCCTGGAGACGTG 60.110 55.000 0.00 0.00 37.42 4.49
271 349 0.250901 AGCAAAATGCCTGGAGACGT 60.251 50.000 0.00 0.00 46.52 4.34
272 350 0.169672 CAGCAAAATGCCTGGAGACG 59.830 55.000 0.00 0.00 46.52 4.18
273 351 0.108945 GCAGCAAAATGCCTGGAGAC 60.109 55.000 0.00 0.00 46.52 3.36
274 352 2.269978 GCAGCAAAATGCCTGGAGA 58.730 52.632 0.00 0.00 46.52 3.71
275 353 4.904466 GCAGCAAAATGCCTGGAG 57.096 55.556 0.00 0.00 46.52 3.86
293 371 1.378514 AAACGCTGCATACTGGGGG 60.379 57.895 0.00 0.00 32.78 5.40
294 372 0.960364 ACAAACGCTGCATACTGGGG 60.960 55.000 0.00 0.00 32.78 4.96
295 373 0.881118 AACAAACGCTGCATACTGGG 59.119 50.000 0.00 0.00 0.00 4.45
296 374 1.266718 ACAACAAACGCTGCATACTGG 59.733 47.619 0.00 0.00 0.00 4.00
297 375 2.686558 ACAACAAACGCTGCATACTG 57.313 45.000 0.00 0.00 0.00 2.74
298 376 4.695455 AGATAACAACAAACGCTGCATACT 59.305 37.500 0.00 0.00 0.00 2.12
299 377 4.969816 AGATAACAACAAACGCTGCATAC 58.030 39.130 0.00 0.00 0.00 2.39
300 378 5.180304 TGAAGATAACAACAAACGCTGCATA 59.820 36.000 0.00 0.00 0.00 3.14
301 379 4.023279 TGAAGATAACAACAAACGCTGCAT 60.023 37.500 0.00 0.00 0.00 3.96
302 380 3.313803 TGAAGATAACAACAAACGCTGCA 59.686 39.130 0.00 0.00 0.00 4.41
303 381 3.884169 TGAAGATAACAACAAACGCTGC 58.116 40.909 0.00 0.00 0.00 5.25
304 382 4.321745 GCATGAAGATAACAACAAACGCTG 59.678 41.667 0.00 0.00 0.00 5.18
305 383 4.216257 AGCATGAAGATAACAACAAACGCT 59.784 37.500 0.00 0.00 0.00 5.07
306 384 4.321745 CAGCATGAAGATAACAACAAACGC 59.678 41.667 0.00 0.00 39.69 4.84
307 385 4.321745 GCAGCATGAAGATAACAACAAACG 59.678 41.667 0.00 0.00 39.69 3.60
308 386 5.344128 CAGCAGCATGAAGATAACAACAAAC 59.656 40.000 0.00 0.00 39.69 2.93
309 387 5.241285 TCAGCAGCATGAAGATAACAACAAA 59.759 36.000 0.00 0.00 39.69 2.83
310 388 4.761227 TCAGCAGCATGAAGATAACAACAA 59.239 37.500 0.00 0.00 39.69 2.83
311 389 4.325972 TCAGCAGCATGAAGATAACAACA 58.674 39.130 0.00 0.00 39.69 3.33
312 390 4.952262 TCAGCAGCATGAAGATAACAAC 57.048 40.909 0.00 0.00 39.69 3.32
313 391 5.648960 TCAATCAGCAGCATGAAGATAACAA 59.351 36.000 0.00 0.00 39.69 2.83
314 392 5.065602 GTCAATCAGCAGCATGAAGATAACA 59.934 40.000 0.00 0.00 39.69 2.41
315 393 5.296283 AGTCAATCAGCAGCATGAAGATAAC 59.704 40.000 0.00 0.00 39.69 1.89
316 394 5.296035 CAGTCAATCAGCAGCATGAAGATAA 59.704 40.000 0.00 0.00 39.69 1.75
317 395 4.814771 CAGTCAATCAGCAGCATGAAGATA 59.185 41.667 0.00 0.00 39.69 1.98
318 396 3.628032 CAGTCAATCAGCAGCATGAAGAT 59.372 43.478 0.00 0.00 39.69 2.40
319 397 3.007635 CAGTCAATCAGCAGCATGAAGA 58.992 45.455 0.00 0.00 39.69 2.87
320 398 3.007635 TCAGTCAATCAGCAGCATGAAG 58.992 45.455 0.00 0.00 39.69 3.02
321 399 3.062122 TCAGTCAATCAGCAGCATGAA 57.938 42.857 0.00 0.00 39.69 2.57
322 400 2.773993 TCAGTCAATCAGCAGCATGA 57.226 45.000 0.00 0.00 39.69 3.07
323 401 4.371855 AAATCAGTCAATCAGCAGCATG 57.628 40.909 0.00 0.00 40.87 4.06
324 402 6.320418 TCATAAAATCAGTCAATCAGCAGCAT 59.680 34.615 0.00 0.00 0.00 3.79
325 403 5.648960 TCATAAAATCAGTCAATCAGCAGCA 59.351 36.000 0.00 0.00 0.00 4.41
326 404 6.037940 TCTCATAAAATCAGTCAATCAGCAGC 59.962 38.462 0.00 0.00 0.00 5.25
327 405 7.549615 TCTCATAAAATCAGTCAATCAGCAG 57.450 36.000 0.00 0.00 0.00 4.24
328 406 9.049523 GTATCTCATAAAATCAGTCAATCAGCA 57.950 33.333 0.00 0.00 0.00 4.41
329 407 8.219769 CGTATCTCATAAAATCAGTCAATCAGC 58.780 37.037 0.00 0.00 0.00 4.26
330 408 8.219769 GCGTATCTCATAAAATCAGTCAATCAG 58.780 37.037 0.00 0.00 0.00 2.90
331 409 7.710475 TGCGTATCTCATAAAATCAGTCAATCA 59.290 33.333 0.00 0.00 0.00 2.57
332 410 8.076714 TGCGTATCTCATAAAATCAGTCAATC 57.923 34.615 0.00 0.00 0.00 2.67
333 411 7.928167 TCTGCGTATCTCATAAAATCAGTCAAT 59.072 33.333 0.00 0.00 0.00 2.57
334 412 7.264947 TCTGCGTATCTCATAAAATCAGTCAA 58.735 34.615 0.00 0.00 0.00 3.18
335 413 6.805713 TCTGCGTATCTCATAAAATCAGTCA 58.194 36.000 0.00 0.00 0.00 3.41
336 414 7.568497 GCTTCTGCGTATCTCATAAAATCAGTC 60.568 40.741 0.00 0.00 0.00 3.51
337 415 6.201806 GCTTCTGCGTATCTCATAAAATCAGT 59.798 38.462 0.00 0.00 0.00 3.41
338 416 6.588552 GCTTCTGCGTATCTCATAAAATCAG 58.411 40.000 0.00 0.00 0.00 2.90
339 417 6.530913 GCTTCTGCGTATCTCATAAAATCA 57.469 37.500 0.00 0.00 0.00 2.57
387 465 4.843220 CTAAGCCAGCAAAATCATAGGG 57.157 45.455 0.00 0.00 0.00 3.53
510 593 4.748701 ACATTATGGGACGGAGGTAGTAT 58.251 43.478 0.00 0.00 0.00 2.12
511 594 4.188937 ACATTATGGGACGGAGGTAGTA 57.811 45.455 0.00 0.00 0.00 1.82
512 595 3.042059 ACATTATGGGACGGAGGTAGT 57.958 47.619 0.00 0.00 0.00 2.73
513 596 4.831155 TCTTACATTATGGGACGGAGGTAG 59.169 45.833 0.00 0.00 0.00 3.18
514 597 4.806892 TCTTACATTATGGGACGGAGGTA 58.193 43.478 0.00 0.00 0.00 3.08
515 598 3.649843 TCTTACATTATGGGACGGAGGT 58.350 45.455 0.00 0.00 0.00 3.85
516 599 4.377897 GTTCTTACATTATGGGACGGAGG 58.622 47.826 0.00 0.00 0.00 4.30
517 600 4.049186 CGTTCTTACATTATGGGACGGAG 58.951 47.826 0.00 0.00 0.00 4.63
518 601 3.448301 ACGTTCTTACATTATGGGACGGA 59.552 43.478 5.92 0.00 0.00 4.69
519 602 3.788937 ACGTTCTTACATTATGGGACGG 58.211 45.455 5.92 0.00 0.00 4.79
520 603 5.789710 AAACGTTCTTACATTATGGGACG 57.210 39.130 0.00 0.00 0.00 4.79
561 644 5.786574 CGTCGCATAATACAAGAACGTTTTT 59.213 36.000 0.46 0.00 0.00 1.94
562 645 5.310489 CGTCGCATAATACAAGAACGTTTT 58.690 37.500 0.46 0.00 0.00 2.43
563 646 4.201647 CCGTCGCATAATACAAGAACGTTT 60.202 41.667 0.46 0.00 0.00 3.60
564 647 3.305094 CCGTCGCATAATACAAGAACGTT 59.695 43.478 0.00 0.00 0.00 3.99
565 648 2.855963 CCGTCGCATAATACAAGAACGT 59.144 45.455 0.00 0.00 0.00 3.99
566 649 3.110358 TCCGTCGCATAATACAAGAACG 58.890 45.455 0.00 0.00 0.00 3.95
567 650 3.489785 CCTCCGTCGCATAATACAAGAAC 59.510 47.826 0.00 0.00 0.00 3.01
568 651 3.491964 CCCTCCGTCGCATAATACAAGAA 60.492 47.826 0.00 0.00 0.00 2.52
569 652 2.035449 CCCTCCGTCGCATAATACAAGA 59.965 50.000 0.00 0.00 0.00 3.02
570 653 2.035449 TCCCTCCGTCGCATAATACAAG 59.965 50.000 0.00 0.00 0.00 3.16
571 654 2.033372 TCCCTCCGTCGCATAATACAA 58.967 47.619 0.00 0.00 0.00 2.41
572 655 1.611977 CTCCCTCCGTCGCATAATACA 59.388 52.381 0.00 0.00 0.00 2.29
573 656 1.612463 ACTCCCTCCGTCGCATAATAC 59.388 52.381 0.00 0.00 0.00 1.89
574 657 1.991121 ACTCCCTCCGTCGCATAATA 58.009 50.000 0.00 0.00 0.00 0.98
575 658 1.991121 TACTCCCTCCGTCGCATAAT 58.009 50.000 0.00 0.00 0.00 1.28
576 659 1.991121 ATACTCCCTCCGTCGCATAA 58.009 50.000 0.00 0.00 0.00 1.90
577 660 2.865119 TATACTCCCTCCGTCGCATA 57.135 50.000 0.00 0.00 0.00 3.14
578 661 1.887198 CTTATACTCCCTCCGTCGCAT 59.113 52.381 0.00 0.00 0.00 4.73
579 662 1.134007 TCTTATACTCCCTCCGTCGCA 60.134 52.381 0.00 0.00 0.00 5.10
580 663 1.602311 TCTTATACTCCCTCCGTCGC 58.398 55.000 0.00 0.00 0.00 5.19
581 664 3.677190 AGATCTTATACTCCCTCCGTCG 58.323 50.000 0.00 0.00 0.00 5.12
582 665 7.706100 ATTTAGATCTTATACTCCCTCCGTC 57.294 40.000 0.00 0.00 0.00 4.79
583 666 8.392479 AGTATTTAGATCTTATACTCCCTCCGT 58.608 37.037 17.85 2.37 31.23 4.69
584 667 8.810990 AGTATTTAGATCTTATACTCCCTCCG 57.189 38.462 17.85 0.00 31.23 4.63
606 689 9.589461 CTCCCTCTGTAAAGAAATATAGGAGTA 57.411 37.037 0.00 0.00 0.00 2.59
607 690 8.068733 ACTCCCTCTGTAAAGAAATATAGGAGT 58.931 37.037 0.00 0.00 0.00 3.85
608 691 8.485578 ACTCCCTCTGTAAAGAAATATAGGAG 57.514 38.462 0.00 0.00 0.00 3.69
609 692 9.364653 GTACTCCCTCTGTAAAGAAATATAGGA 57.635 37.037 0.00 0.00 0.00 2.94
610 693 9.369672 AGTACTCCCTCTGTAAAGAAATATAGG 57.630 37.037 0.00 0.00 0.00 2.57
615 698 9.495382 AATAGAGTACTCCCTCTGTAAAGAAAT 57.505 33.333 19.38 0.00 41.81 2.17
616 699 8.896722 AATAGAGTACTCCCTCTGTAAAGAAA 57.103 34.615 19.38 0.00 41.81 2.52
622 705 9.931698 TGAAAATAATAGAGTACTCCCTCTGTA 57.068 33.333 19.38 4.57 41.81 2.74
623 706 8.697292 GTGAAAATAATAGAGTACTCCCTCTGT 58.303 37.037 19.38 2.25 41.81 3.41
624 707 8.919145 AGTGAAAATAATAGAGTACTCCCTCTG 58.081 37.037 19.38 0.00 41.81 3.35
627 710 9.939424 ACTAGTGAAAATAATAGAGTACTCCCT 57.061 33.333 19.38 4.54 0.00 4.20
628 711 9.968870 CACTAGTGAAAATAATAGAGTACTCCC 57.031 37.037 18.45 0.00 0.00 4.30
645 728 5.989777 GCTTTAGACCAAGTTCACTAGTGAA 59.010 40.000 30.07 30.07 46.27 3.18
646 729 5.069914 TGCTTTAGACCAAGTTCACTAGTGA 59.930 40.000 21.74 21.74 37.91 3.41
647 730 5.177696 GTGCTTTAGACCAAGTTCACTAGTG 59.822 44.000 17.17 17.17 0.00 2.74
648 731 5.163343 TGTGCTTTAGACCAAGTTCACTAGT 60.163 40.000 0.00 0.00 0.00 2.57
649 732 5.297547 TGTGCTTTAGACCAAGTTCACTAG 58.702 41.667 0.00 0.00 0.00 2.57
650 733 5.284861 TGTGCTTTAGACCAAGTTCACTA 57.715 39.130 0.00 0.00 0.00 2.74
651 734 4.150897 TGTGCTTTAGACCAAGTTCACT 57.849 40.909 0.00 0.00 0.00 3.41
652 735 4.787598 CATGTGCTTTAGACCAAGTTCAC 58.212 43.478 0.00 0.00 0.00 3.18
653 736 3.253188 GCATGTGCTTTAGACCAAGTTCA 59.747 43.478 0.00 0.00 38.21 3.18
654 737 3.253188 TGCATGTGCTTTAGACCAAGTTC 59.747 43.478 6.55 0.00 42.66 3.01
655 738 3.221771 TGCATGTGCTTTAGACCAAGTT 58.778 40.909 6.55 0.00 42.66 2.66
656 739 2.816087 CTGCATGTGCTTTAGACCAAGT 59.184 45.455 6.55 0.00 42.66 3.16
735 818 0.665835 GTCATTTTCACGGTGTGCCA 59.334 50.000 8.17 0.00 32.98 4.92
757 840 2.282407 GCACCAATGGCAAATTCATCC 58.718 47.619 0.00 0.00 0.00 3.51
781 864 1.457346 GGCTGTTGACTTGCATAGCT 58.543 50.000 0.00 0.00 37.29 3.32
785 868 1.228245 ACGGGCTGTTGACTTGCAT 60.228 52.632 0.00 0.00 0.00 3.96
810 893 5.045578 CCCAATGTATCCGGATAATCTCCTT 60.046 44.000 25.60 9.66 42.47 3.36
882 965 1.625818 GCCTTCTCCCTCTTTGACAGA 59.374 52.381 0.00 0.00 0.00 3.41
925 1008 1.468224 CGCAGCAGAGTAGTAGTGGTG 60.468 57.143 7.07 7.07 41.57 4.17
1094 1192 6.526566 AACTAGAAACAAACATGAGACGAC 57.473 37.500 0.00 0.00 0.00 4.34
1366 1466 4.193826 TCTGAAAGAACGAATCTCCCAG 57.806 45.455 0.00 4.15 42.31 4.45
1399 1499 0.248843 GGCTCCTTGGTCTCAGAGTG 59.751 60.000 0.00 0.00 0.00 3.51
1400 1500 0.178921 TGGCTCCTTGGTCTCAGAGT 60.179 55.000 0.00 0.00 0.00 3.24
1513 1638 0.871722 CCGTGAGATTTTTGTGGCGA 59.128 50.000 0.00 0.00 0.00 5.54
1514 1639 0.591170 ACCGTGAGATTTTTGTGGCG 59.409 50.000 0.00 0.00 0.00 5.69
1515 1640 3.907894 TTACCGTGAGATTTTTGTGGC 57.092 42.857 0.00 0.00 0.00 5.01
1517 1642 6.491394 TCAAGTTTACCGTGAGATTTTTGTG 58.509 36.000 0.00 0.00 0.00 3.33
1518 1643 6.687081 TCAAGTTTACCGTGAGATTTTTGT 57.313 33.333 0.00 0.00 0.00 2.83
1519 1644 7.979115 TTTCAAGTTTACCGTGAGATTTTTG 57.021 32.000 0.00 0.00 33.01 2.44
1520 1645 8.248253 ACTTTTCAAGTTTACCGTGAGATTTTT 58.752 29.630 0.00 0.00 39.04 1.94
1552 1677 1.153289 CTGTCCCTGCAGATTCCCG 60.153 63.158 17.39 0.00 38.70 5.14
1616 1756 4.397417 CACTTCCAGCCAAAGGAAATCTAG 59.603 45.833 0.00 0.00 44.07 2.43
1617 1757 4.042809 TCACTTCCAGCCAAAGGAAATCTA 59.957 41.667 0.00 0.00 44.07 1.98
1619 1759 3.157087 TCACTTCCAGCCAAAGGAAATC 58.843 45.455 0.00 0.00 44.07 2.17
1620 1760 3.243359 TCACTTCCAGCCAAAGGAAAT 57.757 42.857 0.00 0.00 44.07 2.17
1621 1761 2.746279 TCACTTCCAGCCAAAGGAAA 57.254 45.000 0.00 0.00 44.07 3.13
1622 1762 2.746279 TTCACTTCCAGCCAAAGGAA 57.254 45.000 0.00 0.00 42.62 3.36
1623 1763 2.746279 TTTCACTTCCAGCCAAAGGA 57.254 45.000 0.00 0.00 0.00 3.36
1624 1764 2.629617 ACATTTCACTTCCAGCCAAAGG 59.370 45.455 0.00 0.00 0.00 3.11
1625 1765 4.038402 AGAACATTTCACTTCCAGCCAAAG 59.962 41.667 0.00 0.00 0.00 2.77
1626 1766 3.960102 AGAACATTTCACTTCCAGCCAAA 59.040 39.130 0.00 0.00 0.00 3.28
1627 1767 3.318839 CAGAACATTTCACTTCCAGCCAA 59.681 43.478 0.00 0.00 0.00 4.52
1628 1768 2.886523 CAGAACATTTCACTTCCAGCCA 59.113 45.455 0.00 0.00 0.00 4.75
1629 1769 3.149196 TCAGAACATTTCACTTCCAGCC 58.851 45.455 0.00 0.00 0.00 4.85
1630 1770 3.190118 CCTCAGAACATTTCACTTCCAGC 59.810 47.826 0.00 0.00 0.00 4.85
1631 1771 4.645535 TCCTCAGAACATTTCACTTCCAG 58.354 43.478 0.00 0.00 0.00 3.86
1632 1772 4.705110 TCCTCAGAACATTTCACTTCCA 57.295 40.909 0.00 0.00 0.00 3.53
1633 1773 6.207417 TGATTTCCTCAGAACATTTCACTTCC 59.793 38.462 0.00 0.00 0.00 3.46
1651 1791 2.428530 GCAAAGGGAGGACATGATTTCC 59.571 50.000 0.00 2.56 0.00 3.13
1714 1854 3.827876 TCGTCACCAACCTACAAGTGATA 59.172 43.478 0.00 0.00 41.01 2.15
1717 1857 2.519377 TCGTCACCAACCTACAAGTG 57.481 50.000 0.00 0.00 0.00 3.16
1718 1858 4.877378 TTATCGTCACCAACCTACAAGT 57.123 40.909 0.00 0.00 0.00 3.16
1745 1885 0.249120 TCCGGTTGCATCGATCACTT 59.751 50.000 0.00 0.00 0.00 3.16
1822 1965 3.680490 TGAACCGATGATAAACCAGCAA 58.320 40.909 0.00 0.00 0.00 3.91
1824 1967 3.876914 TGATGAACCGATGATAAACCAGC 59.123 43.478 0.00 0.00 0.00 4.85
1827 1970 3.251004 GCCTGATGAACCGATGATAAACC 59.749 47.826 0.00 0.00 0.00 3.27
1838 1981 1.003580 TCACCAGAAGCCTGATGAACC 59.996 52.381 0.00 0.00 39.93 3.62
1856 1999 5.192927 GGTCAATTCCACCTGTGATATTCA 58.807 41.667 0.00 0.00 0.00 2.57
1857 2000 4.580580 GGGTCAATTCCACCTGTGATATTC 59.419 45.833 0.00 0.00 33.96 1.75
1953 2096 4.394712 GTCGTCCCACCAGCCAGG 62.395 72.222 0.00 0.00 45.67 4.45
2004 2147 1.035139 CCAAGCCTGCAGTCAAGTTT 58.965 50.000 13.81 0.00 0.00 2.66
2049 2192 7.464273 TGTGAAATCCATAATCCATAGCAGAT 58.536 34.615 0.00 0.00 0.00 2.90
2050 2193 6.840527 TGTGAAATCCATAATCCATAGCAGA 58.159 36.000 0.00 0.00 0.00 4.26
2106 2249 3.075882 TGACCATCACTTCCATTTCCCTT 59.924 43.478 0.00 0.00 0.00 3.95
2262 2405 0.108329 GGTCGTCCGTCACCATCAAT 60.108 55.000 0.00 0.00 32.33 2.57
2385 2528 3.199442 TCTGGACCAGTTATCCCAAGA 57.801 47.619 21.06 0.00 35.12 3.02
2718 2864 8.519799 TGAGGAACTAGTTTGAAATTTGAACT 57.480 30.769 10.02 16.43 41.55 3.01
2719 2865 9.185192 CATGAGGAACTAGTTTGAAATTTGAAC 57.815 33.333 10.02 0.59 41.55 3.18
2720 2866 7.867403 GCATGAGGAACTAGTTTGAAATTTGAA 59.133 33.333 10.02 0.00 41.55 2.69
2721 2867 7.014134 TGCATGAGGAACTAGTTTGAAATTTGA 59.986 33.333 10.02 0.00 41.55 2.69
2722 2868 7.147312 TGCATGAGGAACTAGTTTGAAATTTG 58.853 34.615 10.02 3.99 41.55 2.32
2723 2869 7.288810 TGCATGAGGAACTAGTTTGAAATTT 57.711 32.000 10.02 0.00 41.55 1.82
2724 2870 6.899393 TGCATGAGGAACTAGTTTGAAATT 57.101 33.333 10.02 0.00 41.55 1.82
2725 2871 6.626623 GCATGCATGAGGAACTAGTTTGAAAT 60.627 38.462 30.64 0.00 41.55 2.17
2734 2880 3.419943 TGTTTGCATGCATGAGGAACTA 58.580 40.909 30.64 15.86 41.55 2.24
2745 2891 0.316204 AACTCTGGCTGTTTGCATGC 59.684 50.000 11.82 11.82 45.15 4.06
2746 2892 2.806608 AAACTCTGGCTGTTTGCATG 57.193 45.000 0.00 0.00 45.15 4.06
2781 2929 5.868801 CGAAACCAGCCAATGTTTATGAAAT 59.131 36.000 0.00 0.00 34.97 2.17
2787 2935 2.588620 ACCGAAACCAGCCAATGTTTA 58.411 42.857 0.00 0.00 34.97 2.01
2807 2955 9.307121 CTGAATTTTGTGTGTGTTGGTATAAAA 57.693 29.630 0.00 0.00 0.00 1.52
2811 2959 5.596361 TCCTGAATTTTGTGTGTGTTGGTAT 59.404 36.000 0.00 0.00 0.00 2.73
2815 2963 4.799949 CAGTCCTGAATTTTGTGTGTGTTG 59.200 41.667 0.00 0.00 0.00 3.33
2818 2966 3.243501 CCCAGTCCTGAATTTTGTGTGTG 60.244 47.826 0.00 0.00 0.00 3.82
2819 2967 2.958355 CCCAGTCCTGAATTTTGTGTGT 59.042 45.455 0.00 0.00 0.00 3.72
2820 2968 2.958355 ACCCAGTCCTGAATTTTGTGTG 59.042 45.455 0.00 0.00 0.00 3.82
2821 2969 2.958355 CACCCAGTCCTGAATTTTGTGT 59.042 45.455 0.00 0.00 0.00 3.72
2822 2970 2.288395 GCACCCAGTCCTGAATTTTGTG 60.288 50.000 0.00 0.00 0.00 3.33
2823 2971 1.963515 GCACCCAGTCCTGAATTTTGT 59.036 47.619 0.00 0.00 0.00 2.83
2824 2972 2.229784 GAGCACCCAGTCCTGAATTTTG 59.770 50.000 0.00 0.00 0.00 2.44
2829 2977 3.483587 GGAGCACCCAGTCCTGAA 58.516 61.111 0.00 0.00 34.14 3.02
2842 2990 7.905604 AAAAGCAATAAGTTATTTTGGGAGC 57.094 32.000 5.34 5.50 0.00 4.70
2864 3012 8.940952 CAACAAGTTATTTTGGTTCCTCAAAAA 58.059 29.630 6.81 0.00 45.79 1.94
2865 3013 7.550906 CCAACAAGTTATTTTGGTTCCTCAAAA 59.449 33.333 5.42 5.42 46.42 2.44
2866 3014 7.044798 CCAACAAGTTATTTTGGTTCCTCAAA 58.955 34.615 0.00 0.00 35.91 2.69
2867 3015 6.407525 CCCAACAAGTTATTTTGGTTCCTCAA 60.408 38.462 8.52 0.00 38.53 3.02
2868 3016 5.069781 CCCAACAAGTTATTTTGGTTCCTCA 59.930 40.000 8.52 0.00 38.53 3.86
2869 3017 5.510690 CCCCAACAAGTTATTTTGGTTCCTC 60.511 44.000 8.52 0.00 38.53 3.71
2870 3018 4.346709 CCCCAACAAGTTATTTTGGTTCCT 59.653 41.667 8.52 0.00 38.53 3.36
2871 3019 4.637276 CCCCAACAAGTTATTTTGGTTCC 58.363 43.478 8.52 0.00 38.53 3.62
2872 3020 4.062293 GCCCCAACAAGTTATTTTGGTTC 58.938 43.478 8.52 0.00 38.53 3.62
2873 3021 3.714280 AGCCCCAACAAGTTATTTTGGTT 59.286 39.130 8.52 0.00 38.53 3.67
2874 3022 3.313791 AGCCCCAACAAGTTATTTTGGT 58.686 40.909 8.52 0.00 38.53 3.67
2922 3070 2.242196 ACTCAGGTTTGGGGGTATGATG 59.758 50.000 0.00 0.00 0.00 3.07
2936 3084 8.695456 ACACTGAAAATTTAAATCAACTCAGGT 58.305 29.630 20.98 16.12 34.66 4.00
2940 3094 9.301153 ACACACACTGAAAATTTAAATCAACTC 57.699 29.630 0.10 0.00 0.00 3.01
2959 3113 6.074888 GCATCAACTTACAATTTGACACACAC 60.075 38.462 2.79 0.00 34.61 3.82
2960 3114 5.976534 GCATCAACTTACAATTTGACACACA 59.023 36.000 2.79 0.00 34.61 3.72
2984 3150 1.600413 GGCCTGCAAAGTTCGAGTTTG 60.600 52.381 14.80 14.80 40.53 2.93
2987 3153 0.886490 CTGGCCTGCAAAGTTCGAGT 60.886 55.000 3.32 0.00 0.00 4.18
2991 3157 1.163554 CTCTCTGGCCTGCAAAGTTC 58.836 55.000 3.32 0.00 0.00 3.01
3003 3169 2.304180 AGGTTCACCAATGACTCTCTGG 59.696 50.000 0.00 0.00 38.89 3.86
3018 3184 0.618458 GCCCAGATACCACAGGTTCA 59.382 55.000 0.00 0.00 37.09 3.18
3189 3358 1.953686 TGAAGCGCTTTATTATGCCCC 59.046 47.619 25.84 7.67 0.00 5.80
3204 3373 2.486982 TGATGAAAGAGCAGCTTGAAGC 59.513 45.455 9.59 9.59 42.84 3.86
3228 3397 4.430007 TCAAGCGTGTCACCTGTAATATC 58.570 43.478 0.00 0.00 0.00 1.63
3254 3423 7.778382 GCTTTAGGAAATTAAGGTGGGATTCTA 59.222 37.037 0.00 0.00 0.00 2.10
3280 3449 7.497925 ACTTTAAGGACTCTGCAACTTTAAG 57.502 36.000 0.00 0.00 36.32 1.85
3281 3450 8.967664 TTACTTTAAGGACTCTGCAACTTTAA 57.032 30.769 0.00 0.00 0.00 1.52
3283 3452 7.468768 GCTTTACTTTAAGGACTCTGCAACTTT 60.469 37.037 0.00 0.00 0.00 2.66
3290 3459 4.246458 AGCGCTTTACTTTAAGGACTCTG 58.754 43.478 2.64 0.00 0.00 3.35
3291 3460 4.538746 AGCGCTTTACTTTAAGGACTCT 57.461 40.909 2.64 0.00 0.00 3.24
3330 3499 9.184523 CCCCACAAATAATCTTCAACTGTATAA 57.815 33.333 0.00 0.00 0.00 0.98
3332 3501 6.096846 GCCCCACAAATAATCTTCAACTGTAT 59.903 38.462 0.00 0.00 0.00 2.29
3334 3503 4.220602 GCCCCACAAATAATCTTCAACTGT 59.779 41.667 0.00 0.00 0.00 3.55
3336 3505 4.677182 AGCCCCACAAATAATCTTCAACT 58.323 39.130 0.00 0.00 0.00 3.16
3337 3506 6.715347 ATAGCCCCACAAATAATCTTCAAC 57.285 37.500 0.00 0.00 0.00 3.18
3347 3516 9.836179 TCCATTATTATTTATAGCCCCACAAAT 57.164 29.630 0.00 0.00 0.00 2.32
3410 5387 4.762289 AGGGATGTTTCTGTCTCCATAC 57.238 45.455 0.00 0.00 0.00 2.39
3420 5397 5.324409 TGTGCTTATTCAAGGGATGTTTCT 58.676 37.500 0.00 0.00 31.96 2.52
3443 5420 4.887071 TGCACAGGAACAAAGAACAGTTAT 59.113 37.500 0.00 0.00 0.00 1.89
3716 11108 2.235402 ACCAACTTAGTACCCATCACGG 59.765 50.000 0.00 0.00 0.00 4.94
3774 11166 2.889045 TGCCGGTCTCCTGTACATATAC 59.111 50.000 1.90 0.00 0.00 1.47
3923 11315 6.533367 GGCACTGAAAAGATTAGAGAGTAGTG 59.467 42.308 0.00 0.00 35.99 2.74
4012 11404 0.615850 CTCCTCTTGGGGTTCAGGAC 59.384 60.000 0.00 0.00 35.33 3.85
4060 11452 2.641559 GTTCGTGTCGGACCTCGT 59.358 61.111 17.44 0.00 40.32 4.18
4092 11484 2.226674 CGAAGAGCCAACCTTTCCTTTC 59.773 50.000 0.00 0.00 0.00 2.62
4110 11502 2.232756 TAACAGTTGTGAGCTGCGAA 57.767 45.000 0.00 0.00 37.47 4.70
4132 11524 4.404640 CTGGATCTGGATTGTTATGGCAT 58.595 43.478 4.88 4.88 0.00 4.40
4133 11525 3.824133 CTGGATCTGGATTGTTATGGCA 58.176 45.455 0.00 0.00 0.00 4.92
4135 11527 3.152341 GGCTGGATCTGGATTGTTATGG 58.848 50.000 0.00 0.00 0.00 2.74
4141 11533 1.211212 TCACAGGCTGGATCTGGATTG 59.789 52.381 20.34 4.52 36.62 2.67
4143 11535 1.698532 GATCACAGGCTGGATCTGGAT 59.301 52.381 25.81 16.22 37.52 3.41
4146 11538 0.463204 ACGATCACAGGCTGGATCTG 59.537 55.000 27.93 24.32 38.18 2.90
4154 11546 1.728971 CAGACAGAAACGATCACAGGC 59.271 52.381 0.00 0.00 0.00 4.85
4161 11553 4.008074 ACACCAATCAGACAGAAACGAT 57.992 40.909 0.00 0.00 0.00 3.73
4162 11554 3.469008 ACACCAATCAGACAGAAACGA 57.531 42.857 0.00 0.00 0.00 3.85
4163 11555 3.679980 CCTACACCAATCAGACAGAAACG 59.320 47.826 0.00 0.00 0.00 3.60
4289 11681 0.460311 CAAGGCCGTCGAAGAGGTAT 59.540 55.000 0.00 0.00 41.34 2.73
4354 11746 4.694233 CAGCAGCCTCACCACGCT 62.694 66.667 0.00 0.00 35.10 5.07
4411 11803 3.315949 GGTACCGTCAGTGGGGCA 61.316 66.667 0.00 0.00 0.00 5.36
4414 11806 1.407979 GATAGTGGTACCGTCAGTGGG 59.592 57.143 7.57 0.00 0.00 4.61
4417 11809 1.006281 TGGGATAGTGGTACCGTCAGT 59.994 52.381 7.57 0.00 0.00 3.41
4436 11828 4.240096 GCAATTTGTCCTTGAACCAGATG 58.760 43.478 0.00 0.00 0.00 2.90
4508 12806 6.174720 TCTGGATATAAACGAGGCAGATTT 57.825 37.500 0.00 0.00 0.00 2.17
4602 12901 6.684897 TTCCCCAATCAGAAATGTGATTTT 57.315 33.333 3.28 0.00 43.29 1.82
4636 12935 1.687660 TGATTTGGCAAAGCTTGAGCA 59.312 42.857 26.29 5.51 45.16 4.26
4652 12951 7.124599 TCCCAAAGCTTATTTGACATCATGATT 59.875 33.333 5.16 0.00 0.00 2.57
4684 12983 2.738846 CAAGGTATCAGCGTGATATGGC 59.261 50.000 9.78 0.77 40.97 4.40
4701 13000 6.991938 TGGTAGAAAATTTGACCATTCAAGG 58.008 36.000 13.28 0.00 42.79 3.61
4754 13067 1.141858 GTGTGATCCTCCTCATTCCCC 59.858 57.143 0.00 0.00 0.00 4.81
4788 13104 1.634973 TGGGCTTCATGGATCTGAACA 59.365 47.619 0.00 0.00 31.98 3.18
4789 13105 2.295885 CTGGGCTTCATGGATCTGAAC 58.704 52.381 0.00 0.00 31.98 3.18
4792 13108 0.822532 GCCTGGGCTTCATGGATCTG 60.823 60.000 4.12 0.00 38.26 2.90
4793 13109 1.535685 GCCTGGGCTTCATGGATCT 59.464 57.895 4.12 0.00 38.26 2.75
4840 13183 1.617804 CCGTCCAGGAGTACCCTTACA 60.618 57.143 0.00 0.00 44.85 2.41
4841 13184 1.109609 CCGTCCAGGAGTACCCTTAC 58.890 60.000 0.00 2.62 44.85 2.34
4842 13185 0.685458 GCCGTCCAGGAGTACCCTTA 60.685 60.000 0.00 0.00 44.85 2.69
4843 13186 1.988406 GCCGTCCAGGAGTACCCTT 60.988 63.158 0.00 0.00 44.85 3.95
4845 13188 1.623542 AATGCCGTCCAGGAGTACCC 61.624 60.000 0.00 0.00 45.00 3.69
4846 13189 0.179081 GAATGCCGTCCAGGAGTACC 60.179 60.000 0.00 0.00 45.00 3.34
4847 13190 0.535335 TGAATGCCGTCCAGGAGTAC 59.465 55.000 0.00 0.00 45.00 2.73
4848 13191 1.138859 CATGAATGCCGTCCAGGAGTA 59.861 52.381 0.00 0.00 45.00 2.59
4849 13192 0.107508 CATGAATGCCGTCCAGGAGT 60.108 55.000 0.00 0.00 45.00 3.85
4850 13193 2.699073 CATGAATGCCGTCCAGGAG 58.301 57.895 0.00 0.00 45.00 3.69
4851 13194 4.961637 CATGAATGCCGTCCAGGA 57.038 55.556 0.00 0.00 45.00 3.86
4861 13204 1.471287 CACAGTGGACCAGCATGAATG 59.529 52.381 0.00 0.00 39.69 2.67
4862 13205 1.352017 TCACAGTGGACCAGCATGAAT 59.648 47.619 0.00 0.00 39.69 2.57
4863 13206 0.764271 TCACAGTGGACCAGCATGAA 59.236 50.000 0.00 0.00 39.69 2.57
4864 13207 0.322648 CTCACAGTGGACCAGCATGA 59.677 55.000 0.00 0.00 39.69 3.07
4865 13208 0.035881 ACTCACAGTGGACCAGCATG 59.964 55.000 0.00 0.00 0.00 4.06
4866 13209 0.035881 CACTCACAGTGGACCAGCAT 59.964 55.000 0.00 0.00 42.35 3.79
4867 13210 1.447217 CACTCACAGTGGACCAGCA 59.553 57.895 0.00 0.00 42.35 4.41
4868 13211 4.368391 CACTCACAGTGGACCAGC 57.632 61.111 0.00 0.00 42.35 4.85
4988 13336 2.200081 ACCATACAGCCTGATGAGGTT 58.800 47.619 0.00 0.00 42.15 3.50
5023 13371 1.602377 GCTTGTGGACTTGTGGTGTAC 59.398 52.381 0.00 0.00 0.00 2.90
5056 13404 5.117584 ACTTGCAGAATAGCTTGAGATCTG 58.882 41.667 0.00 0.38 40.30 2.90
5067 13415 5.934625 GGGGATGTACATACTTGCAGAATAG 59.065 44.000 17.65 0.00 0.00 1.73
5176 13524 8.564509 TCAGAATCATGTGATGAATGTTTACA 57.435 30.769 0.00 0.00 43.50 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.