Multiple sequence alignment - TraesCS3A01G333300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G333300 chr3A 100.000 4548 0 0 1 4548 578871992 578876539 0.000000e+00 8399.0
1 TraesCS3A01G333300 chr3D 92.086 2363 116 34 1605 3918 438942114 438944454 0.000000e+00 3262.0
2 TraesCS3A01G333300 chr3D 88.532 1587 115 31 30 1579 438940438 438941994 0.000000e+00 1860.0
3 TraesCS3A01G333300 chr3D 84.174 436 47 12 4122 4547 438944488 438944911 1.970000e-108 403.0
4 TraesCS3A01G333300 chr3D 97.778 45 1 0 4318 4362 5616197 5616241 1.360000e-10 78.7
5 TraesCS3A01G333300 chr3B 93.161 2208 103 26 1583 3752 575256169 575258366 0.000000e+00 3197.0
6 TraesCS3A01G333300 chr3B 92.786 1497 70 16 30 1505 575254576 575256055 0.000000e+00 2132.0
7 TraesCS3A01G333300 chr3B 86.339 183 21 4 4366 4547 576143056 576143235 3.590000e-46 196.0
8 TraesCS3A01G333300 chr5D 81.827 1040 163 23 2503 3523 483698315 483699347 0.000000e+00 850.0
9 TraesCS3A01G333300 chr5D 97.727 44 1 0 4325 4368 197145773 197145730 4.880000e-10 76.8
10 TraesCS3A01G333300 chr1A 88.410 673 73 5 2848 3517 452020202 452020872 0.000000e+00 806.0
11 TraesCS3A01G333300 chr1A 89.951 408 40 1 1660 2066 500565279 500564872 4.030000e-145 525.0
12 TraesCS3A01G333300 chr1A 90.625 288 27 0 2497 2784 500564360 500564073 2.570000e-102 383.0
13 TraesCS3A01G333300 chr1A 93.750 48 3 0 4319 4366 76730399 76730352 6.310000e-09 73.1
14 TraesCS3A01G333300 chr1B 88.341 669 73 5 2852 3517 473824087 473824753 0.000000e+00 798.0
15 TraesCS3A01G333300 chr1B 86.842 646 85 0 2859 3504 544997398 544996753 0.000000e+00 723.0
16 TraesCS3A01G333300 chr1B 89.951 408 40 1 1660 2066 544999063 544998656 4.030000e-145 525.0
17 TraesCS3A01G333300 chr1B 90.278 288 28 0 2497 2784 544998179 544997892 1.190000e-100 377.0
18 TraesCS3A01G333300 chr1B 91.566 83 6 1 3918 4000 18112405 18112486 3.720000e-21 113.0
19 TraesCS3A01G333300 chr1D 88.351 661 73 4 2860 3517 351247226 351247885 0.000000e+00 791.0
20 TraesCS3A01G333300 chr1D 89.952 418 41 1 1650 2066 405112807 405112390 5.180000e-149 538.0
21 TraesCS3A01G333300 chr1D 90.278 288 28 0 2497 2784 405111873 405111586 1.190000e-100 377.0
22 TraesCS3A01G333300 chr4A 80.784 1020 178 14 2507 3520 596625633 596624626 0.000000e+00 782.0
23 TraesCS3A01G333300 chr4A 89.535 86 8 1 3918 4003 671649029 671648945 1.730000e-19 108.0
24 TraesCS3A01G333300 chr4A 85.882 85 7 4 4284 4368 715090036 715090115 8.110000e-13 86.1
25 TraesCS3A01G333300 chr5B 86.233 661 89 2 2864 3523 594875158 594875817 0.000000e+00 715.0
26 TraesCS3A01G333300 chr6D 85.567 679 93 3 2859 3534 97014734 97015410 0.000000e+00 706.0
27 TraesCS3A01G333300 chr6D 95.455 44 2 0 4324 4367 125999483 125999526 2.270000e-08 71.3
28 TraesCS3A01G333300 chr2B 83.681 288 47 0 2497 2784 59179999 59180286 5.800000e-69 272.0
29 TraesCS3A01G333300 chr2B 90.361 83 7 1 3918 4000 171793363 171793444 1.730000e-19 108.0
30 TraesCS3A01G333300 chr6B 82.014 278 50 0 2507 2784 180923325 180923602 2.110000e-58 237.0
31 TraesCS3A01G333300 chr6B 90.217 92 7 2 3917 4008 517835393 517835304 7.990000e-23 119.0
32 TraesCS3A01G333300 chr6A 81.655 278 51 0 2507 2784 115946307 115946584 9.840000e-57 231.0
33 TraesCS3A01G333300 chr6A 91.566 83 6 1 3918 4000 612190023 612190104 3.720000e-21 113.0
34 TraesCS3A01G333300 chr4B 90.909 88 7 1 3916 4003 292180332 292180246 2.870000e-22 117.0
35 TraesCS3A01G333300 chr5A 89.011 91 8 1 3917 4007 12205267 12205179 1.340000e-20 111.0
36 TraesCS3A01G333300 chr7D 88.764 89 9 1 3918 4006 570645310 570645223 1.730000e-19 108.0
37 TraesCS3A01G333300 chr7D 88.462 52 4 2 4318 4368 485093680 485093630 1.370000e-05 62.1
38 TraesCS3A01G333300 chrUn 87.234 94 9 3 3918 4011 95202354 95202264 2.240000e-18 104.0
39 TraesCS3A01G333300 chr2D 90.476 63 6 0 4304 4366 427150385 427150447 2.920000e-12 84.2
40 TraesCS3A01G333300 chr7B 87.500 64 6 1 4304 4367 603993298 603993237 6.310000e-09 73.1
41 TraesCS3A01G333300 chr2A 89.796 49 5 0 4318 4366 584450442 584450394 3.800000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G333300 chr3A 578871992 578876539 4547 False 8399.000000 8399 100.000000 1 4548 1 chr3A.!!$F1 4547
1 TraesCS3A01G333300 chr3D 438940438 438944911 4473 False 1841.666667 3262 88.264000 30 4547 3 chr3D.!!$F2 4517
2 TraesCS3A01G333300 chr3B 575254576 575258366 3790 False 2664.500000 3197 92.973500 30 3752 2 chr3B.!!$F2 3722
3 TraesCS3A01G333300 chr5D 483698315 483699347 1032 False 850.000000 850 81.827000 2503 3523 1 chr5D.!!$F1 1020
4 TraesCS3A01G333300 chr1A 452020202 452020872 670 False 806.000000 806 88.410000 2848 3517 1 chr1A.!!$F1 669
5 TraesCS3A01G333300 chr1A 500564073 500565279 1206 True 454.000000 525 90.288000 1660 2784 2 chr1A.!!$R2 1124
6 TraesCS3A01G333300 chr1B 473824087 473824753 666 False 798.000000 798 88.341000 2852 3517 1 chr1B.!!$F2 665
7 TraesCS3A01G333300 chr1B 544996753 544999063 2310 True 541.666667 723 89.023667 1660 3504 3 chr1B.!!$R1 1844
8 TraesCS3A01G333300 chr1D 351247226 351247885 659 False 791.000000 791 88.351000 2860 3517 1 chr1D.!!$F1 657
9 TraesCS3A01G333300 chr1D 405111586 405112807 1221 True 457.500000 538 90.115000 1650 2784 2 chr1D.!!$R1 1134
10 TraesCS3A01G333300 chr4A 596624626 596625633 1007 True 782.000000 782 80.784000 2507 3520 1 chr4A.!!$R1 1013
11 TraesCS3A01G333300 chr5B 594875158 594875817 659 False 715.000000 715 86.233000 2864 3523 1 chr5B.!!$F1 659
12 TraesCS3A01G333300 chr6D 97014734 97015410 676 False 706.000000 706 85.567000 2859 3534 1 chr6D.!!$F1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 340 0.107831 CGTGTGGTCCCCAGAAAAGA 59.892 55.000 0.00 0.0 32.34 2.52 F
1400 1435 0.035152 TTGAAGATCTGGTGGCGCAT 60.035 50.000 10.83 0.0 0.00 4.73 F
1658 1820 0.322906 CTCCTTCTGTTTCCAGGGCC 60.323 60.000 0.00 0.0 39.31 5.80 F
3139 4078 1.602237 CCATGGCCGTTACCTCACT 59.398 57.895 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 1552 0.322816 GCTTGAGATCCCAGTTGCCA 60.323 55.000 0.00 0.00 0.0 4.92 R
3181 4120 0.842613 CGTTGATCATCTGCTCGTCG 59.157 55.000 0.00 0.00 0.0 5.12 R
3436 4375 1.344438 AGGTCGTTCATGTTGCTCTCA 59.656 47.619 0.00 0.00 0.0 3.27 R
4206 5164 0.326264 AGAAAACTCATGAGGCCGCT 59.674 50.000 26.08 14.63 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 2.622942 ACATTTGTGTTTGCAGGTCGAT 59.377 40.909 0.00 0.00 0.00 3.59
131 140 2.545532 CCGATCTGATCTCACCTTCTGC 60.546 54.545 15.16 0.00 0.00 4.26
132 141 2.100418 CGATCTGATCTCACCTTCTGCA 59.900 50.000 15.16 0.00 0.00 4.41
134 143 3.606595 TCTGATCTCACCTTCTGCAAG 57.393 47.619 0.00 0.00 0.00 4.01
145 154 3.004734 ACCTTCTGCAAGATGTTTTTCCG 59.995 43.478 0.00 0.00 46.36 4.30
146 155 3.568538 CTTCTGCAAGATGTTTTTCCGG 58.431 45.455 0.00 0.00 46.36 5.14
147 156 1.269448 TCTGCAAGATGTTTTTCCGGC 59.731 47.619 0.00 0.00 38.67 6.13
149 158 1.410517 TGCAAGATGTTTTTCCGGCAA 59.589 42.857 0.00 0.00 0.00 4.52
150 159 2.159043 TGCAAGATGTTTTTCCGGCAAA 60.159 40.909 0.00 0.00 0.00 3.68
151 160 2.869192 GCAAGATGTTTTTCCGGCAAAA 59.131 40.909 7.98 7.98 31.73 2.44
152 161 3.311048 GCAAGATGTTTTTCCGGCAAAAA 59.689 39.130 13.69 15.02 40.93 1.94
190 202 7.488322 CAAAACAAAAGAGGACACTTGGAATA 58.512 34.615 0.00 0.00 0.00 1.75
209 221 5.392811 GGAATACACTCAAGCAGTACTACGT 60.393 44.000 0.00 0.00 32.21 3.57
314 335 2.445085 ACACGTGTGGTCCCCAGA 60.445 61.111 22.71 0.00 32.34 3.86
319 340 0.107831 CGTGTGGTCCCCAGAAAAGA 59.892 55.000 0.00 0.00 32.34 2.52
464 486 1.137086 CCCCACGATACAACTCTGGAG 59.863 57.143 0.00 0.00 0.00 3.86
517 539 4.030452 GCCAGACACCTGCGCAAC 62.030 66.667 13.05 0.64 39.07 4.17
523 545 1.514678 GACACCTGCGCAACCAATGA 61.515 55.000 13.05 0.00 0.00 2.57
986 1011 2.017049 GTCTCATGCCCGCACTTTATT 58.983 47.619 0.00 0.00 0.00 1.40
1029 1054 6.601613 TGTAAGTATGGATTTGGAATGTCACC 59.398 38.462 0.00 0.00 0.00 4.02
1034 1059 2.420022 GGATTTGGAATGTCACCGTGAG 59.580 50.000 0.08 0.00 0.00 3.51
1154 1180 0.815734 CGTGGATCCGGTCTGTAGTT 59.184 55.000 7.39 0.00 0.00 2.24
1155 1181 1.202268 CGTGGATCCGGTCTGTAGTTC 60.202 57.143 7.39 0.00 0.00 3.01
1263 1290 2.750237 CCGGCCCCTTGTTACTGC 60.750 66.667 0.00 0.00 0.00 4.40
1294 1321 9.257651 GTGTGGTATATTCTGGAGTTATGTTAC 57.742 37.037 0.00 0.00 0.00 2.50
1299 1326 3.241067 TCTGGAGTTATGTTACGTGGC 57.759 47.619 0.00 0.00 0.00 5.01
1313 1340 5.406175 TGTTACGTGGCACTTGTTAGATTAC 59.594 40.000 16.72 1.60 0.00 1.89
1323 1355 7.852516 GCACTTGTTAGATTACTAATAGTGGC 58.147 38.462 21.63 15.66 43.85 5.01
1326 1358 7.711339 ACTTGTTAGATTACTAATAGTGGCAGC 59.289 37.037 2.68 0.00 40.15 5.25
1382 1417 2.440539 AGTTCGCGAGTCATTGTCTT 57.559 45.000 9.59 0.00 0.00 3.01
1400 1435 0.035152 TTGAAGATCTGGTGGCGCAT 60.035 50.000 10.83 0.00 0.00 4.73
1429 1465 8.850454 TTTGCTTTTACTAGTTGATTTGTCAC 57.150 30.769 0.00 0.00 0.00 3.67
1496 1532 4.405680 TCCGGATCTAGATGTGTTCAATGT 59.594 41.667 10.74 0.00 0.00 2.71
1497 1533 4.747108 CCGGATCTAGATGTGTTCAATGTC 59.253 45.833 10.74 0.00 0.00 3.06
1498 1534 5.351458 CGGATCTAGATGTGTTCAATGTCA 58.649 41.667 10.74 0.00 0.00 3.58
1499 1535 5.812127 CGGATCTAGATGTGTTCAATGTCAA 59.188 40.000 10.74 0.00 0.00 3.18
1500 1536 6.019237 CGGATCTAGATGTGTTCAATGTCAAG 60.019 42.308 10.74 0.00 0.00 3.02
1501 1537 6.820656 GGATCTAGATGTGTTCAATGTCAAGT 59.179 38.462 10.74 0.00 0.00 3.16
1502 1538 7.201591 GGATCTAGATGTGTTCAATGTCAAGTG 60.202 40.741 10.74 0.00 0.00 3.16
1503 1539 5.934043 TCTAGATGTGTTCAATGTCAAGTGG 59.066 40.000 0.00 0.00 0.00 4.00
1504 1540 3.822735 AGATGTGTTCAATGTCAAGTGGG 59.177 43.478 0.00 0.00 0.00 4.61
1505 1541 3.011566 TGTGTTCAATGTCAAGTGGGT 57.988 42.857 0.00 0.00 0.00 4.51
1506 1542 4.157849 TGTGTTCAATGTCAAGTGGGTA 57.842 40.909 0.00 0.00 0.00 3.69
1507 1543 4.133820 TGTGTTCAATGTCAAGTGGGTAG 58.866 43.478 0.00 0.00 0.00 3.18
1508 1544 4.141597 TGTGTTCAATGTCAAGTGGGTAGA 60.142 41.667 0.00 0.00 0.00 2.59
1509 1545 4.819630 GTGTTCAATGTCAAGTGGGTAGAA 59.180 41.667 0.00 0.00 0.00 2.10
1510 1546 5.049405 GTGTTCAATGTCAAGTGGGTAGAAG 60.049 44.000 0.00 0.00 0.00 2.85
1511 1547 4.974645 TCAATGTCAAGTGGGTAGAAGT 57.025 40.909 0.00 0.00 0.00 3.01
1512 1548 5.304686 TCAATGTCAAGTGGGTAGAAGTT 57.695 39.130 0.00 0.00 0.00 2.66
1513 1549 5.305585 TCAATGTCAAGTGGGTAGAAGTTC 58.694 41.667 0.00 0.00 0.00 3.01
1514 1550 4.974645 ATGTCAAGTGGGTAGAAGTTCA 57.025 40.909 5.50 0.00 0.00 3.18
1515 1551 4.336889 TGTCAAGTGGGTAGAAGTTCAG 57.663 45.455 5.50 0.00 0.00 3.02
1516 1552 3.709653 TGTCAAGTGGGTAGAAGTTCAGT 59.290 43.478 5.50 0.00 0.00 3.41
1517 1553 4.058817 GTCAAGTGGGTAGAAGTTCAGTG 58.941 47.826 5.50 0.00 0.00 3.66
1518 1554 3.071023 TCAAGTGGGTAGAAGTTCAGTGG 59.929 47.826 5.50 0.00 0.00 4.00
1567 1625 3.499537 TGCTTGTGTAGATCTGTGCTTTG 59.500 43.478 5.18 0.00 0.00 2.77
1579 1646 5.032327 TCTGTGCTTTGCTGATATGATCT 57.968 39.130 0.00 0.00 0.00 2.75
1580 1647 4.814771 TCTGTGCTTTGCTGATATGATCTG 59.185 41.667 0.00 0.00 0.00 2.90
1581 1648 4.773013 TGTGCTTTGCTGATATGATCTGA 58.227 39.130 0.00 0.00 0.00 3.27
1583 1650 5.648960 TGTGCTTTGCTGATATGATCTGAAA 59.351 36.000 0.00 0.00 0.00 2.69
1585 1652 6.856938 GTGCTTTGCTGATATGATCTGAAATC 59.143 38.462 0.00 0.00 0.00 2.17
1588 1655 7.751348 GCTTTGCTGATATGATCTGAAATCATC 59.249 37.037 3.90 0.00 39.30 2.92
1590 1657 7.017319 TGCTGATATGATCTGAAATCATCCT 57.983 36.000 3.90 0.00 39.30 3.24
1592 1659 7.390718 TGCTGATATGATCTGAAATCATCCTTG 59.609 37.037 3.90 0.00 39.30 3.61
1613 1774 4.234180 TGGTTTTCCATGCTTGTTGCAAC 61.234 43.478 22.83 22.83 46.77 4.17
1658 1820 0.322906 CTCCTTCTGTTTCCAGGGCC 60.323 60.000 0.00 0.00 39.31 5.80
1961 2123 2.091541 CAATCTGGTGCGGGTAACAAT 58.908 47.619 0.00 0.00 39.74 2.71
2148 2317 3.618690 AGCTTATGTGGTGTCTCCTTC 57.381 47.619 0.00 0.00 37.07 3.46
2156 2325 4.631234 TGTGGTGTCTCCTTCCCTTATAT 58.369 43.478 0.00 0.00 37.07 0.86
2157 2326 5.784023 TGTGGTGTCTCCTTCCCTTATATA 58.216 41.667 0.00 0.00 37.07 0.86
2214 2418 8.231692 TGGTTGTGAATATTTACATGTATGGG 57.768 34.615 13.24 0.00 0.00 4.00
2269 2481 6.591834 GCACGCTATATATCCTTCAGATTGTT 59.408 38.462 0.00 0.00 36.33 2.83
2293 2505 5.069781 TGGCCCACCAAATAATTAGCATAAC 59.930 40.000 0.00 0.00 45.37 1.89
2295 2507 6.215845 GCCCACCAAATAATTAGCATAACAG 58.784 40.000 0.00 0.00 0.00 3.16
2296 2508 6.215845 CCCACCAAATAATTAGCATAACAGC 58.784 40.000 0.00 0.00 0.00 4.40
2308 2521 3.633986 AGCATAACAGCCCTTTTATCAGC 59.366 43.478 0.00 0.00 34.23 4.26
2309 2522 3.381272 GCATAACAGCCCTTTTATCAGCA 59.619 43.478 0.00 0.00 0.00 4.41
2446 2814 9.062524 AGTGTACTGAATTGCTGTATTGTTTTA 57.937 29.630 0.00 0.00 34.13 1.52
2476 2844 8.839343 CCTGTGCTGTATTTTATCATGTATTGA 58.161 33.333 0.00 0.00 39.12 2.57
2546 3060 2.180159 CTCTTGGTGGTGGTACCGGG 62.180 65.000 6.32 0.00 42.58 5.73
3139 4078 1.602237 CCATGGCCGTTACCTCACT 59.398 57.895 0.00 0.00 0.00 3.41
3181 4120 2.777832 AGATGAGCACAAAGGAGGTC 57.222 50.000 0.00 0.00 33.48 3.85
3436 4375 1.830477 GAGATGGAGTTCACTGAGGCT 59.170 52.381 0.00 0.00 0.00 4.58
3496 4435 1.050988 ACCAGGATGCTACTGCCGAT 61.051 55.000 0.00 0.00 38.71 4.18
3579 4518 1.466025 ATGTGGTGCTTTGCTGGGTG 61.466 55.000 0.00 0.00 0.00 4.61
3580 4519 2.521465 TGGTGCTTTGCTGGGTGG 60.521 61.111 0.00 0.00 0.00 4.61
3674 4615 2.173758 TACGCCACCGCCATTCTTCA 62.174 55.000 0.00 0.00 38.22 3.02
3699 4653 6.010219 TGCCTTTCCTAAGCTTTGTATTTCT 58.990 36.000 3.20 0.00 0.00 2.52
3700 4654 6.151144 TGCCTTTCCTAAGCTTTGTATTTCTC 59.849 38.462 3.20 0.00 0.00 2.87
3740 4694 4.126437 CGGTATTGTATCACTTGATGCCA 58.874 43.478 1.77 0.00 36.50 4.92
3742 4696 5.106948 CGGTATTGTATCACTTGATGCCATC 60.107 44.000 0.00 0.00 36.50 3.51
3770 4724 3.054728 TGTTCTGTGTTGAGGTTTCTGGA 60.055 43.478 0.00 0.00 0.00 3.86
3771 4725 3.194005 TCTGTGTTGAGGTTTCTGGAC 57.806 47.619 0.00 0.00 0.00 4.02
3789 4743 3.869623 CCTCTCTGGTGGTGAATGG 57.130 57.895 0.00 0.00 0.00 3.16
3790 4744 0.393537 CCTCTCTGGTGGTGAATGGC 60.394 60.000 0.00 0.00 0.00 4.40
3809 4767 4.985538 TGGCTTCTGAGTTGGTATTTCTT 58.014 39.130 0.00 0.00 0.00 2.52
3810 4768 4.761739 TGGCTTCTGAGTTGGTATTTCTTG 59.238 41.667 0.00 0.00 0.00 3.02
3811 4769 4.379918 GGCTTCTGAGTTGGTATTTCTTGC 60.380 45.833 0.00 0.00 0.00 4.01
3812 4770 4.216257 GCTTCTGAGTTGGTATTTCTTGCA 59.784 41.667 0.00 0.00 0.00 4.08
3813 4771 5.278463 GCTTCTGAGTTGGTATTTCTTGCAA 60.278 40.000 0.00 0.00 0.00 4.08
3815 4773 6.899393 TCTGAGTTGGTATTTCTTGCAAAT 57.101 33.333 0.00 0.00 0.00 2.32
3817 4775 8.402798 TCTGAGTTGGTATTTCTTGCAAATTA 57.597 30.769 0.00 0.00 0.00 1.40
3818 4776 9.023962 TCTGAGTTGGTATTTCTTGCAAATTAT 57.976 29.630 0.00 0.00 0.00 1.28
3822 4780 9.139174 AGTTGGTATTTCTTGCAAATTATTTCG 57.861 29.630 0.00 0.00 0.00 3.46
3823 4781 8.921670 GTTGGTATTTCTTGCAAATTATTTCGT 58.078 29.630 0.00 0.00 0.00 3.85
3824 4782 8.682128 TGGTATTTCTTGCAAATTATTTCGTC 57.318 30.769 0.00 0.00 0.00 4.20
3825 4783 8.300286 TGGTATTTCTTGCAAATTATTTCGTCA 58.700 29.630 0.00 0.00 0.00 4.35
3828 4786 7.851822 TTTCTTGCAAATTATTTCGTCAGAC 57.148 32.000 0.00 0.00 0.00 3.51
3830 4788 6.602179 TCTTGCAAATTATTTCGTCAGACTG 58.398 36.000 0.00 0.00 0.00 3.51
3831 4789 5.940192 TGCAAATTATTTCGTCAGACTGT 57.060 34.783 1.59 0.00 0.00 3.55
3832 4790 7.386573 TCTTGCAAATTATTTCGTCAGACTGTA 59.613 33.333 0.00 0.00 0.00 2.74
3833 4791 7.609760 TGCAAATTATTTCGTCAGACTGTAT 57.390 32.000 1.59 0.00 0.00 2.29
3835 4793 6.412072 GCAAATTATTTCGTCAGACTGTATGC 59.588 38.462 1.59 0.00 0.00 3.14
3836 4794 7.463544 CAAATTATTTCGTCAGACTGTATGCA 58.536 34.615 1.59 0.00 0.00 3.96
3838 4796 2.654749 TTCGTCAGACTGTATGCAGG 57.345 50.000 15.65 0.00 46.62 4.85
3839 4797 0.817654 TCGTCAGACTGTATGCAGGG 59.182 55.000 15.65 4.58 46.62 4.45
3840 4798 0.532573 CGTCAGACTGTATGCAGGGT 59.467 55.000 15.65 0.00 46.62 4.34
3843 4801 3.568430 CGTCAGACTGTATGCAGGGTATA 59.432 47.826 15.65 0.00 46.62 1.47
3855 4813 3.010696 TGCAGGGTATAATGGTTCCAACA 59.989 43.478 0.00 0.00 0.00 3.33
3858 4816 5.240844 GCAGGGTATAATGGTTCCAACATAC 59.759 44.000 13.28 13.28 0.00 2.39
3859 4817 5.468746 CAGGGTATAATGGTTCCAACATACG 59.531 44.000 14.36 0.00 0.00 3.06
3861 4819 5.455040 GGGTATAATGGTTCCAACATACGGA 60.455 44.000 14.36 0.00 0.00 4.69
3862 4820 5.699458 GGTATAATGGTTCCAACATACGGAG 59.301 44.000 14.36 0.00 33.01 4.63
3889 4847 3.507162 TGAAATTCTCAAGTGGCCTCA 57.493 42.857 3.32 0.00 0.00 3.86
3901 4859 3.461773 GCCTCAGCCCGTCAGCTA 61.462 66.667 0.00 0.00 42.61 3.32
3903 4861 1.754621 CCTCAGCCCGTCAGCTAGA 60.755 63.158 0.00 0.00 42.61 2.43
3904 4862 1.435515 CTCAGCCCGTCAGCTAGAC 59.564 63.158 0.00 6.31 42.61 2.59
3905 4863 2.010582 CTCAGCCCGTCAGCTAGACC 62.011 65.000 9.71 0.00 44.66 3.85
3907 4865 2.760385 GCCCGTCAGCTAGACCCT 60.760 66.667 9.71 0.00 44.66 4.34
3908 4866 3.082579 GCCCGTCAGCTAGACCCTG 62.083 68.421 9.71 0.00 44.66 4.45
3909 4867 2.427245 CCCGTCAGCTAGACCCTGG 61.427 68.421 9.71 6.34 44.66 4.45
3910 4868 1.682684 CCGTCAGCTAGACCCTGGT 60.683 63.158 9.71 0.00 44.66 4.00
3912 4870 1.251527 CGTCAGCTAGACCCTGGTGT 61.252 60.000 9.71 0.00 44.66 4.16
3914 4872 0.178932 TCAGCTAGACCCTGGTGTGT 60.179 55.000 0.00 0.00 33.89 3.72
3915 4873 0.687354 CAGCTAGACCCTGGTGTGTT 59.313 55.000 0.00 0.00 0.00 3.32
3916 4874 0.687354 AGCTAGACCCTGGTGTGTTG 59.313 55.000 0.00 0.00 0.00 3.33
3917 4875 0.396811 GCTAGACCCTGGTGTGTTGT 59.603 55.000 0.00 0.00 0.00 3.32
3918 4876 1.621814 GCTAGACCCTGGTGTGTTGTA 59.378 52.381 0.00 0.00 0.00 2.41
3919 4877 2.612221 GCTAGACCCTGGTGTGTTGTAC 60.612 54.545 0.00 0.00 0.00 2.90
3920 4878 1.802553 AGACCCTGGTGTGTTGTACT 58.197 50.000 0.00 0.00 0.00 2.73
3921 4879 1.692519 AGACCCTGGTGTGTTGTACTC 59.307 52.381 0.00 0.00 0.00 2.59
3922 4880 0.763035 ACCCTGGTGTGTTGTACTCC 59.237 55.000 0.00 0.00 42.11 3.85
3923 4881 0.036306 CCCTGGTGTGTTGTACTCCC 59.964 60.000 0.00 0.00 41.28 4.30
3924 4882 1.056660 CCTGGTGTGTTGTACTCCCT 58.943 55.000 0.00 0.00 41.28 4.20
3925 4883 1.420138 CCTGGTGTGTTGTACTCCCTT 59.580 52.381 0.00 0.00 41.28 3.95
3926 4884 2.158667 CCTGGTGTGTTGTACTCCCTTT 60.159 50.000 0.00 0.00 41.28 3.11
3927 4885 2.878406 CTGGTGTGTTGTACTCCCTTTG 59.122 50.000 0.00 0.00 41.28 2.77
3928 4886 2.240160 TGGTGTGTTGTACTCCCTTTGT 59.760 45.455 0.00 0.00 41.28 2.83
3929 4887 2.876550 GGTGTGTTGTACTCCCTTTGTC 59.123 50.000 0.00 0.00 37.04 3.18
3930 4888 2.876550 GTGTGTTGTACTCCCTTTGTCC 59.123 50.000 0.00 0.00 0.00 4.02
3931 4889 2.158726 TGTGTTGTACTCCCTTTGTCCC 60.159 50.000 0.00 0.00 0.00 4.46
3932 4890 2.128535 TGTTGTACTCCCTTTGTCCCA 58.871 47.619 0.00 0.00 0.00 4.37
3933 4891 2.714250 TGTTGTACTCCCTTTGTCCCAT 59.286 45.455 0.00 0.00 0.00 4.00
3934 4892 3.911260 TGTTGTACTCCCTTTGTCCCATA 59.089 43.478 0.00 0.00 0.00 2.74
3935 4893 4.351407 TGTTGTACTCCCTTTGTCCCATAA 59.649 41.667 0.00 0.00 0.00 1.90
3936 4894 5.014755 TGTTGTACTCCCTTTGTCCCATAAT 59.985 40.000 0.00 0.00 0.00 1.28
3937 4895 5.110814 TGTACTCCCTTTGTCCCATAATG 57.889 43.478 0.00 0.00 0.00 1.90
3938 4896 4.538490 TGTACTCCCTTTGTCCCATAATGT 59.462 41.667 0.00 0.00 0.00 2.71
3939 4897 5.727279 TGTACTCCCTTTGTCCCATAATGTA 59.273 40.000 0.00 0.00 0.00 2.29
3940 4898 5.789574 ACTCCCTTTGTCCCATAATGTAA 57.210 39.130 0.00 0.00 0.00 2.41
3941 4899 5.755849 ACTCCCTTTGTCCCATAATGTAAG 58.244 41.667 0.00 0.00 0.00 2.34
3942 4900 5.491078 ACTCCCTTTGTCCCATAATGTAAGA 59.509 40.000 0.00 0.00 0.00 2.10
3943 4901 5.751586 TCCCTTTGTCCCATAATGTAAGAC 58.248 41.667 0.00 0.00 0.00 3.01
3944 4902 4.887655 CCCTTTGTCCCATAATGTAAGACC 59.112 45.833 0.00 0.00 0.00 3.85
3945 4903 5.340027 CCCTTTGTCCCATAATGTAAGACCT 60.340 44.000 0.00 0.00 0.00 3.85
3946 4904 6.187682 CCTTTGTCCCATAATGTAAGACCTT 58.812 40.000 0.00 0.00 0.00 3.50
3947 4905 6.663523 CCTTTGTCCCATAATGTAAGACCTTT 59.336 38.462 0.00 0.00 0.00 3.11
3948 4906 7.178451 CCTTTGTCCCATAATGTAAGACCTTTT 59.822 37.037 0.00 0.00 0.00 2.27
3949 4907 8.485578 TTTGTCCCATAATGTAAGACCTTTTT 57.514 30.769 0.00 0.00 0.00 1.94
4006 4964 2.642171 TGGGACAGAGGGACTACATT 57.358 50.000 0.00 0.00 41.55 2.71
4007 4965 2.187958 TGGGACAGAGGGACTACATTG 58.812 52.381 0.00 0.00 41.55 2.82
4008 4966 2.188817 GGGACAGAGGGACTACATTGT 58.811 52.381 0.00 0.00 41.55 2.71
4009 4967 3.245839 TGGGACAGAGGGACTACATTGTA 60.246 47.826 0.00 0.00 41.55 2.41
4010 4968 3.132467 GGGACAGAGGGACTACATTGTAC 59.868 52.174 0.00 0.00 41.55 2.90
4027 4985 0.457443 TACTGCTGTGATGCCTCTCG 59.543 55.000 6.48 0.00 0.00 4.04
4037 4995 2.202797 GCCTCTCGCGCTCATTGA 60.203 61.111 5.56 0.00 0.00 2.57
4052 5010 4.817464 GCTCATTGATTCTGCTCTGAGATT 59.183 41.667 9.28 0.00 33.59 2.40
4053 5011 5.990386 GCTCATTGATTCTGCTCTGAGATTA 59.010 40.000 9.28 0.00 33.59 1.75
4054 5012 6.146510 GCTCATTGATTCTGCTCTGAGATTAG 59.853 42.308 9.28 3.45 33.59 1.73
4055 5013 7.357429 TCATTGATTCTGCTCTGAGATTAGA 57.643 36.000 9.28 5.80 0.00 2.10
4056 5014 7.789026 TCATTGATTCTGCTCTGAGATTAGAA 58.211 34.615 9.28 13.88 32.57 2.10
4057 5015 8.262933 TCATTGATTCTGCTCTGAGATTAGAAA 58.737 33.333 9.28 1.47 31.89 2.52
4058 5016 9.058174 CATTGATTCTGCTCTGAGATTAGAAAT 57.942 33.333 9.28 3.51 31.89 2.17
4059 5017 9.629878 ATTGATTCTGCTCTGAGATTAGAAATT 57.370 29.630 9.28 1.56 31.89 1.82
4060 5018 9.458727 TTGATTCTGCTCTGAGATTAGAAATTT 57.541 29.630 9.28 0.00 31.89 1.82
4061 5019 9.107177 TGATTCTGCTCTGAGATTAGAAATTTC 57.893 33.333 10.33 10.33 31.89 2.17
4062 5020 7.531280 TTCTGCTCTGAGATTAGAAATTTCG 57.469 36.000 12.42 0.00 0.00 3.46
4063 5021 5.521735 TCTGCTCTGAGATTAGAAATTTCGC 59.478 40.000 12.42 6.50 0.00 4.70
4064 5022 5.423015 TGCTCTGAGATTAGAAATTTCGCT 58.577 37.500 12.42 8.69 0.00 4.93
4065 5023 5.877012 TGCTCTGAGATTAGAAATTTCGCTT 59.123 36.000 12.42 1.38 0.00 4.68
4066 5024 7.041721 TGCTCTGAGATTAGAAATTTCGCTTA 58.958 34.615 12.42 5.44 0.00 3.09
4067 5025 7.010552 TGCTCTGAGATTAGAAATTTCGCTTAC 59.989 37.037 12.42 5.23 0.00 2.34
4068 5026 7.223777 GCTCTGAGATTAGAAATTTCGCTTACT 59.776 37.037 12.42 9.43 0.00 2.24
4069 5027 8.412608 TCTGAGATTAGAAATTTCGCTTACTG 57.587 34.615 12.42 8.16 0.00 2.74
4070 5028 8.251026 TCTGAGATTAGAAATTTCGCTTACTGA 58.749 33.333 12.42 9.93 0.00 3.41
4071 5029 8.771920 TGAGATTAGAAATTTCGCTTACTGAA 57.228 30.769 12.42 0.00 0.00 3.02
4072 5030 8.656849 TGAGATTAGAAATTTCGCTTACTGAAC 58.343 33.333 12.42 0.84 0.00 3.18
4073 5031 8.779354 AGATTAGAAATTTCGCTTACTGAACT 57.221 30.769 12.42 1.11 0.00 3.01
4074 5032 8.660373 AGATTAGAAATTTCGCTTACTGAACTG 58.340 33.333 12.42 0.00 0.00 3.16
4075 5033 7.956420 TTAGAAATTTCGCTTACTGAACTGA 57.044 32.000 12.42 0.00 0.00 3.41
4076 5034 6.473397 AGAAATTTCGCTTACTGAACTGAG 57.527 37.500 12.42 0.00 0.00 3.35
4077 5035 4.670227 AATTTCGCTTACTGAACTGAGC 57.330 40.909 0.00 0.00 0.00 4.26
4078 5036 3.386768 TTTCGCTTACTGAACTGAGCT 57.613 42.857 0.00 0.00 33.09 4.09
4079 5037 3.386768 TTCGCTTACTGAACTGAGCTT 57.613 42.857 0.00 0.00 33.09 3.74
4080 5038 4.514781 TTCGCTTACTGAACTGAGCTTA 57.485 40.909 0.00 0.00 33.09 3.09
4081 5039 4.514781 TCGCTTACTGAACTGAGCTTAA 57.485 40.909 0.00 0.00 33.09 1.85
4082 5040 4.486090 TCGCTTACTGAACTGAGCTTAAG 58.514 43.478 0.00 0.00 33.09 1.85
4083 5041 4.022242 TCGCTTACTGAACTGAGCTTAAGT 60.022 41.667 4.02 0.00 33.09 2.24
4084 5042 4.090642 CGCTTACTGAACTGAGCTTAAGTG 59.909 45.833 4.02 1.08 33.09 3.16
4085 5043 4.143009 GCTTACTGAACTGAGCTTAAGTGC 60.143 45.833 4.02 3.04 32.54 4.40
4087 5045 4.078639 ACTGAACTGAGCTTAAGTGCTT 57.921 40.909 4.02 0.00 44.17 3.91
4088 5046 4.455606 ACTGAACTGAGCTTAAGTGCTTT 58.544 39.130 4.02 0.00 44.17 3.51
4089 5047 4.513318 ACTGAACTGAGCTTAAGTGCTTTC 59.487 41.667 4.02 2.38 44.17 2.62
4090 5048 3.815401 TGAACTGAGCTTAAGTGCTTTCC 59.185 43.478 4.02 0.00 44.17 3.13
4091 5049 3.492102 ACTGAGCTTAAGTGCTTTCCA 57.508 42.857 4.02 0.00 44.17 3.53
4092 5050 4.026356 ACTGAGCTTAAGTGCTTTCCAT 57.974 40.909 4.02 0.00 44.17 3.41
4093 5051 4.401925 ACTGAGCTTAAGTGCTTTCCATT 58.598 39.130 4.02 0.00 44.17 3.16
4094 5052 4.829492 ACTGAGCTTAAGTGCTTTCCATTT 59.171 37.500 4.02 0.00 44.17 2.32
4095 5053 5.302823 ACTGAGCTTAAGTGCTTTCCATTTT 59.697 36.000 4.02 0.00 44.17 1.82
4096 5054 6.160576 TGAGCTTAAGTGCTTTCCATTTTT 57.839 33.333 4.02 0.00 44.17 1.94
4097 5055 7.014230 ACTGAGCTTAAGTGCTTTCCATTTTTA 59.986 33.333 4.02 0.00 44.17 1.52
4098 5056 7.370383 TGAGCTTAAGTGCTTTCCATTTTTAG 58.630 34.615 4.02 0.00 44.17 1.85
4099 5057 6.691508 AGCTTAAGTGCTTTCCATTTTTAGG 58.308 36.000 4.02 0.00 40.93 2.69
4100 5058 5.348724 GCTTAAGTGCTTTCCATTTTTAGGC 59.651 40.000 4.02 0.00 0.00 3.93
4101 5059 4.953940 AAGTGCTTTCCATTTTTAGGCA 57.046 36.364 0.00 0.00 0.00 4.75
4102 5060 4.525912 AGTGCTTTCCATTTTTAGGCAG 57.474 40.909 0.00 0.00 0.00 4.85
4103 5061 4.151883 AGTGCTTTCCATTTTTAGGCAGA 58.848 39.130 0.00 0.00 0.00 4.26
4104 5062 4.219288 AGTGCTTTCCATTTTTAGGCAGAG 59.781 41.667 0.00 0.00 0.00 3.35
4105 5063 3.056607 TGCTTTCCATTTTTAGGCAGAGC 60.057 43.478 0.00 0.00 0.00 4.09
4106 5064 3.194329 GCTTTCCATTTTTAGGCAGAGCT 59.806 43.478 0.00 0.00 0.00 4.09
4107 5065 4.322273 GCTTTCCATTTTTAGGCAGAGCTT 60.322 41.667 0.00 0.00 0.00 3.74
4108 5066 5.105756 GCTTTCCATTTTTAGGCAGAGCTTA 60.106 40.000 0.00 0.00 0.00 3.09
4109 5067 6.572314 GCTTTCCATTTTTAGGCAGAGCTTAA 60.572 38.462 0.00 0.00 0.00 1.85
4110 5068 6.909550 TTCCATTTTTAGGCAGAGCTTAAA 57.090 33.333 2.70 2.70 38.09 1.52
4111 5069 6.267496 TCCATTTTTAGGCAGAGCTTAAAC 57.733 37.500 5.90 0.00 39.21 2.01
4112 5070 5.772672 TCCATTTTTAGGCAGAGCTTAAACA 59.227 36.000 5.90 1.24 39.21 2.83
4113 5071 6.437162 TCCATTTTTAGGCAGAGCTTAAACAT 59.563 34.615 5.90 3.34 39.21 2.71
4114 5072 7.039082 TCCATTTTTAGGCAGAGCTTAAACATT 60.039 33.333 5.90 0.00 39.21 2.71
4115 5073 7.603784 CCATTTTTAGGCAGAGCTTAAACATTT 59.396 33.333 5.90 0.00 39.21 2.32
4116 5074 8.992073 CATTTTTAGGCAGAGCTTAAACATTTT 58.008 29.630 5.90 0.00 39.21 1.82
4117 5075 7.945033 TTTTAGGCAGAGCTTAAACATTTTG 57.055 32.000 5.90 0.00 39.21 2.44
4118 5076 6.892658 TTAGGCAGAGCTTAAACATTTTGA 57.107 33.333 0.00 0.00 27.54 2.69
4119 5077 5.126396 AGGCAGAGCTTAAACATTTTGAC 57.874 39.130 0.00 0.00 0.00 3.18
4120 5078 4.829492 AGGCAGAGCTTAAACATTTTGACT 59.171 37.500 0.00 0.00 0.00 3.41
4121 5079 6.003950 AGGCAGAGCTTAAACATTTTGACTA 58.996 36.000 0.00 0.00 0.00 2.59
4122 5080 6.660949 AGGCAGAGCTTAAACATTTTGACTAT 59.339 34.615 0.00 0.00 0.00 2.12
4123 5081 7.177392 AGGCAGAGCTTAAACATTTTGACTATT 59.823 33.333 0.00 0.00 0.00 1.73
4159 5117 5.885449 ATTTGAAACAGTCATGGGGAAAA 57.115 34.783 0.00 0.00 35.70 2.29
4180 5138 5.897377 AACTCCCGACCTGAAAATATTTG 57.103 39.130 0.39 0.00 0.00 2.32
4187 5145 5.185056 CCGACCTGAAAATATTTGGAAAGGT 59.815 40.000 17.62 17.62 39.46 3.50
4198 5156 9.603921 AAATATTTGGAAAGGTAATTGATGCAG 57.396 29.630 0.00 0.00 0.00 4.41
4206 5164 7.769044 GGAAAGGTAATTGATGCAGAGTAACTA 59.231 37.037 0.00 0.00 0.00 2.24
4207 5165 8.723942 AAAGGTAATTGATGCAGAGTAACTAG 57.276 34.615 0.00 0.00 0.00 2.57
4208 5166 6.284459 AGGTAATTGATGCAGAGTAACTAGC 58.716 40.000 0.00 0.00 0.00 3.42
4210 5168 2.871182 TGATGCAGAGTAACTAGCGG 57.129 50.000 0.00 0.00 0.00 5.52
4224 5182 1.936547 CTAGCGGCCTCATGAGTTTTC 59.063 52.381 21.11 7.88 0.00 2.29
4231 5189 5.335127 CGGCCTCATGAGTTTTCTTATTTG 58.665 41.667 21.11 2.69 0.00 2.32
4259 5220 7.466804 ACACTCCTCATTATAGGAAAACCAAA 58.533 34.615 0.00 0.00 45.08 3.28
4272 5233 7.797121 AGGAAAACCAAATATTCATGAGGTT 57.203 32.000 8.57 8.57 40.81 3.50
4282 5243 9.726232 CAAATATTCATGAGGTTTGATGTACAG 57.274 33.333 17.61 0.00 32.93 2.74
4291 5252 4.844655 AGGTTTGATGTACAGTACTCCCTT 59.155 41.667 12.07 0.00 0.00 3.95
4293 5254 4.713824 TTGATGTACAGTACTCCCTTCG 57.286 45.455 12.07 0.00 0.00 3.79
4296 5257 4.954202 TGATGTACAGTACTCCCTTCGATT 59.046 41.667 12.07 0.00 0.00 3.34
4304 5265 8.423906 ACAGTACTCCCTTCGATTCATATTAT 57.576 34.615 0.00 0.00 0.00 1.28
4331 5303 8.857694 TGTATGGATGTATTCGTATCTAGACA 57.142 34.615 0.00 0.00 34.89 3.41
4332 5304 9.292195 TGTATGGATGTATTCGTATCTAGACAA 57.708 33.333 0.00 0.00 34.53 3.18
4335 5307 9.862371 ATGGATGTATTCGTATCTAGACAAATC 57.138 33.333 0.00 0.00 0.00 2.17
4336 5308 9.078990 TGGATGTATTCGTATCTAGACAAATCT 57.921 33.333 0.00 0.00 39.15 2.40
4369 5341 8.679725 AGTAATATGGATCAGAGGGAGTACTAA 58.320 37.037 0.00 0.00 0.00 2.24
4374 5346 6.023603 TGGATCAGAGGGAGTACTAAACTTT 58.976 40.000 0.00 0.00 39.07 2.66
4396 5368 4.478203 TCCATGAACAAATGTGAAAGGGA 58.522 39.130 0.00 0.00 0.00 4.20
4397 5369 4.898265 TCCATGAACAAATGTGAAAGGGAA 59.102 37.500 0.00 0.00 0.00 3.97
4398 5370 5.010922 TCCATGAACAAATGTGAAAGGGAAG 59.989 40.000 0.00 0.00 0.00 3.46
4399 5371 5.010922 CCATGAACAAATGTGAAAGGGAAGA 59.989 40.000 0.00 0.00 0.00 2.87
4400 5372 6.295462 CCATGAACAAATGTGAAAGGGAAGAT 60.295 38.462 0.00 0.00 0.00 2.40
4401 5373 7.093814 CCATGAACAAATGTGAAAGGGAAGATA 60.094 37.037 0.00 0.00 0.00 1.98
4402 5374 8.472413 CATGAACAAATGTGAAAGGGAAGATAT 58.528 33.333 0.00 0.00 0.00 1.63
4403 5375 8.421249 TGAACAAATGTGAAAGGGAAGATATT 57.579 30.769 0.00 0.00 0.00 1.28
4404 5376 8.522830 TGAACAAATGTGAAAGGGAAGATATTC 58.477 33.333 0.00 0.00 0.00 1.75
4405 5377 7.410120 ACAAATGTGAAAGGGAAGATATTCC 57.590 36.000 10.82 10.82 40.38 3.01
4406 5378 6.953520 ACAAATGTGAAAGGGAAGATATTCCA 59.046 34.615 20.35 0.00 42.89 3.53
4407 5379 7.123247 ACAAATGTGAAAGGGAAGATATTCCAG 59.877 37.037 20.35 0.00 42.89 3.86
4408 5380 6.581388 ATGTGAAAGGGAAGATATTCCAGA 57.419 37.500 20.35 0.00 42.89 3.86
4409 5381 5.745227 TGTGAAAGGGAAGATATTCCAGAC 58.255 41.667 20.35 9.21 42.89 3.51
4464 5436 6.057533 TGCATAACTCATTTGCAGTATAGCT 58.942 36.000 0.00 0.00 41.18 3.32
4493 5465 9.391006 GTTCCCAAACAGAGATATATTACACAA 57.609 33.333 0.00 0.00 35.36 3.33
4494 5466 8.958119 TCCCAAACAGAGATATATTACACAAC 57.042 34.615 0.00 0.00 0.00 3.32
4495 5467 7.709182 TCCCAAACAGAGATATATTACACAACG 59.291 37.037 0.00 0.00 0.00 4.10
4496 5468 7.345192 CCAAACAGAGATATATTACACAACGC 58.655 38.462 0.00 0.00 0.00 4.84
4497 5469 7.011016 CCAAACAGAGATATATTACACAACGCA 59.989 37.037 0.00 0.00 0.00 5.24
4498 5470 7.464830 AACAGAGATATATTACACAACGCAC 57.535 36.000 0.00 0.00 0.00 5.34
4508 5480 0.599991 CACAACGCACCAGTCTAGCA 60.600 55.000 0.00 0.00 0.00 3.49
4539 5511 3.184178 CCATGCGTTGTTTTTCCATGTTC 59.816 43.478 0.00 0.00 33.29 3.18
4540 5512 3.791973 TGCGTTGTTTTTCCATGTTCT 57.208 38.095 0.00 0.00 0.00 3.01
4541 5513 4.902443 TGCGTTGTTTTTCCATGTTCTA 57.098 36.364 0.00 0.00 0.00 2.10
4543 5515 5.038033 TGCGTTGTTTTTCCATGTTCTAAC 58.962 37.500 0.00 0.00 0.00 2.34
4544 5516 5.163602 TGCGTTGTTTTTCCATGTTCTAACT 60.164 36.000 0.00 0.00 0.00 2.24
4546 5518 6.913673 GCGTTGTTTTTCCATGTTCTAACTTA 59.086 34.615 0.00 0.00 0.00 2.24
4547 5519 7.096763 GCGTTGTTTTTCCATGTTCTAACTTAC 60.097 37.037 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.590451 CAAATGCTTTTAATTATGTGGACATCT 57.410 29.630 0.00 0.00 37.76 2.90
15 16 7.769970 CCCAAATGCTTTTAATTATGTGGACAT 59.230 33.333 0.00 0.00 40.22 3.06
18 19 7.038729 TGACCCAAATGCTTTTAATTATGTGGA 60.039 33.333 0.00 0.00 0.00 4.02
19 20 7.102346 TGACCCAAATGCTTTTAATTATGTGG 58.898 34.615 0.00 0.00 0.00 4.17
20 21 8.545229 TTGACCCAAATGCTTTTAATTATGTG 57.455 30.769 0.00 0.00 0.00 3.21
21 22 9.737844 AATTGACCCAAATGCTTTTAATTATGT 57.262 25.926 0.00 0.00 0.00 2.29
24 25 8.510505 GCAAATTGACCCAAATGCTTTTAATTA 58.489 29.630 0.00 0.00 37.32 1.40
25 26 7.231115 AGCAAATTGACCCAAATGCTTTTAATT 59.769 29.630 13.80 0.00 43.13 1.40
26 27 6.716173 AGCAAATTGACCCAAATGCTTTTAAT 59.284 30.769 13.80 0.00 43.13 1.40
27 28 6.060788 AGCAAATTGACCCAAATGCTTTTAA 58.939 32.000 13.80 0.00 43.13 1.52
28 29 5.619220 AGCAAATTGACCCAAATGCTTTTA 58.381 33.333 13.80 0.00 43.13 1.52
152 161 7.064966 CCTCTTTTGTTTTGCAGTCATCTTTTT 59.935 33.333 0.00 0.00 0.00 1.94
154 163 6.044682 CCTCTTTTGTTTTGCAGTCATCTTT 58.955 36.000 0.00 0.00 0.00 2.52
155 164 5.360714 TCCTCTTTTGTTTTGCAGTCATCTT 59.639 36.000 0.00 0.00 0.00 2.40
156 165 4.889409 TCCTCTTTTGTTTTGCAGTCATCT 59.111 37.500 0.00 0.00 0.00 2.90
157 166 4.978580 GTCCTCTTTTGTTTTGCAGTCATC 59.021 41.667 0.00 0.00 0.00 2.92
158 167 4.402155 TGTCCTCTTTTGTTTTGCAGTCAT 59.598 37.500 0.00 0.00 0.00 3.06
160 169 4.105486 GTGTCCTCTTTTGTTTTGCAGTC 58.895 43.478 0.00 0.00 0.00 3.51
190 202 3.305199 GGAACGTAGTACTGCTTGAGTGT 60.305 47.826 5.39 0.00 45.00 3.55
209 221 1.762957 GATTGAGTGAGGGGATCGGAA 59.237 52.381 0.00 0.00 0.00 4.30
314 335 0.475048 TTCTCCCCCTCCCGTCTTTT 60.475 55.000 0.00 0.00 0.00 2.27
464 486 3.195698 GGTCGGGTTCAGATGCGC 61.196 66.667 0.00 0.00 0.00 6.09
517 539 2.358125 TGCGTGGACCGTCATTGG 60.358 61.111 0.00 0.00 39.32 3.16
567 589 1.228398 TTGGGTCATTGCTTGCGGA 60.228 52.632 0.00 0.00 0.00 5.54
712 735 7.361286 GCTCGACCTTGAGTAAATTTGAAATCT 60.361 37.037 0.00 0.00 38.28 2.40
763 786 4.570874 GCGCTCCCCTCCAATCCC 62.571 72.222 0.00 0.00 0.00 3.85
764 787 4.918201 CGCGCTCCCCTCCAATCC 62.918 72.222 5.56 0.00 0.00 3.01
1011 1036 2.754552 CACGGTGACATTCCAAATCCAT 59.245 45.455 0.74 0.00 0.00 3.41
1029 1054 1.607713 CAGCAACTACTCGACTCACG 58.392 55.000 0.00 0.00 44.09 4.35
1034 1059 0.108756 GGACCCAGCAACTACTCGAC 60.109 60.000 0.00 0.00 0.00 4.20
1263 1290 6.716934 ACTCCAGAATATACCACACTACTG 57.283 41.667 0.00 0.00 0.00 2.74
1294 1321 6.903883 ATTAGTAATCTAACAAGTGCCACG 57.096 37.500 0.00 0.00 38.71 4.94
1299 1326 8.942338 TGCCACTATTAGTAATCTAACAAGTG 57.058 34.615 11.74 11.74 43.68 3.16
1313 1340 6.441274 CCAAACAATATGCTGCCACTATTAG 58.559 40.000 0.00 0.00 0.00 1.73
1323 1355 3.956199 AGTGGATCCCAAACAATATGCTG 59.044 43.478 9.90 0.00 34.18 4.41
1326 1358 4.273480 GTCGAGTGGATCCCAAACAATATG 59.727 45.833 9.90 0.00 34.18 1.78
1368 1403 4.032672 CAGATCTTCAAGACAATGACTCGC 59.967 45.833 0.00 0.00 0.00 5.03
1382 1417 0.745486 CATGCGCCACCAGATCTTCA 60.745 55.000 4.18 0.00 0.00 3.02
1429 1465 6.986817 CAGTAACAATGACTGGGGAACTATAG 59.013 42.308 0.00 0.00 40.58 1.31
1496 1532 3.071023 CCACTGAACTTCTACCCACTTGA 59.929 47.826 0.00 0.00 0.00 3.02
1497 1533 3.403038 CCACTGAACTTCTACCCACTTG 58.597 50.000 0.00 0.00 0.00 3.16
1498 1534 2.224548 GCCACTGAACTTCTACCCACTT 60.225 50.000 0.00 0.00 0.00 3.16
1499 1535 1.348036 GCCACTGAACTTCTACCCACT 59.652 52.381 0.00 0.00 0.00 4.00
1500 1536 1.071699 TGCCACTGAACTTCTACCCAC 59.928 52.381 0.00 0.00 0.00 4.61
1501 1537 1.429930 TGCCACTGAACTTCTACCCA 58.570 50.000 0.00 0.00 0.00 4.51
1502 1538 2.152016 GTTGCCACTGAACTTCTACCC 58.848 52.381 0.00 0.00 0.00 3.69
1503 1539 3.127425 AGTTGCCACTGAACTTCTACC 57.873 47.619 0.00 0.00 28.94 3.18
1514 1550 1.004044 CTTGAGATCCCAGTTGCCACT 59.996 52.381 0.00 0.00 0.00 4.00
1515 1551 1.457346 CTTGAGATCCCAGTTGCCAC 58.543 55.000 0.00 0.00 0.00 5.01
1516 1552 0.322816 GCTTGAGATCCCAGTTGCCA 60.323 55.000 0.00 0.00 0.00 4.92
1517 1553 1.034292 GGCTTGAGATCCCAGTTGCC 61.034 60.000 3.16 3.16 0.00 4.52
1518 1554 1.034292 GGGCTTGAGATCCCAGTTGC 61.034 60.000 0.00 0.00 42.18 4.17
1531 1589 2.051941 AAGCAACACATGGGGCTTG 58.948 52.632 10.26 2.52 44.29 4.01
1567 1625 7.148222 CCAAGGATGATTTCAGATCATATCAGC 60.148 40.741 0.00 1.19 38.73 4.26
1579 1646 5.569227 GCATGGAAAACCAAGGATGATTTCA 60.569 40.000 0.00 0.00 35.57 2.69
1580 1647 4.872124 GCATGGAAAACCAAGGATGATTTC 59.128 41.667 0.00 0.00 34.30 2.17
1581 1648 4.533311 AGCATGGAAAACCAAGGATGATTT 59.467 37.500 0.00 0.00 0.00 2.17
1583 1650 3.716431 AGCATGGAAAACCAAGGATGAT 58.284 40.909 0.00 0.00 0.00 2.45
1585 1652 3.007182 ACAAGCATGGAAAACCAAGGATG 59.993 43.478 0.00 0.00 0.00 3.51
1588 1655 3.132925 CAACAAGCATGGAAAACCAAGG 58.867 45.455 0.00 0.00 0.00 3.61
1590 1657 2.559440 GCAACAAGCATGGAAAACCAA 58.441 42.857 0.00 0.00 44.79 3.67
1613 1774 5.803461 CGCATGGCCAAATTAATATCAGATG 59.197 40.000 10.96 0.00 0.00 2.90
1658 1820 2.686915 GTGCAGGATTTCCCTCATCTTG 59.313 50.000 0.00 0.00 45.60 3.02
2122 2291 2.154462 GACACCACATAAGCTTGCACT 58.846 47.619 9.86 0.00 0.00 4.40
2170 2339 3.117926 ACCATCACAGCACTATTATGGCA 60.118 43.478 0.00 0.00 37.91 4.92
2183 2352 8.461222 ACATGTAAATATTCACAACCATCACAG 58.539 33.333 0.00 0.00 0.00 3.66
2240 2451 3.832490 TGAAGGATATATAGCGTGCACCT 59.168 43.478 12.15 11.92 0.00 4.00
2248 2459 6.317391 GGCCAACAATCTGAAGGATATATAGC 59.683 42.308 0.00 0.00 33.71 2.97
2269 2481 3.107402 TGCTAATTATTTGGTGGGCCA 57.893 42.857 0.00 0.00 44.38 5.36
2284 2496 5.299279 GCTGATAAAAGGGCTGTTATGCTAA 59.701 40.000 0.00 0.00 0.00 3.09
2293 2505 8.800332 AGAATATTTATGCTGATAAAAGGGCTG 58.200 33.333 0.00 0.00 37.53 4.85
2295 2507 9.415544 CAAGAATATTTATGCTGATAAAAGGGC 57.584 33.333 0.00 0.00 37.53 5.19
2397 2612 4.792528 GCAGACTTGCTAAGCAGAATAG 57.207 45.455 0.00 0.00 46.95 1.73
2428 2648 7.331687 ACAGGCATTAAAACAATACAGCAATTC 59.668 33.333 0.00 0.00 0.00 2.17
2446 2814 6.097270 ACATGATAAAATACAGCACAGGCATT 59.903 34.615 0.00 0.00 44.61 3.56
2505 3019 2.092212 AGTGGCATACTTGGAATCCTGG 60.092 50.000 0.00 0.00 35.67 4.45
3139 4078 2.046023 CGGAACATGGCAGAGGCA 60.046 61.111 0.00 0.00 43.71 4.75
3181 4120 0.842613 CGTTGATCATCTGCTCGTCG 59.157 55.000 0.00 0.00 0.00 5.12
3436 4375 1.344438 AGGTCGTTCATGTTGCTCTCA 59.656 47.619 0.00 0.00 0.00 3.27
3487 4426 2.134287 GCCCTCCTCATCGGCAGTA 61.134 63.158 0.00 0.00 42.52 2.74
3496 4435 1.451567 CTCGTACTCGCCCTCCTCA 60.452 63.158 0.00 0.00 36.96 3.86
3674 4615 6.665248 AGAAATACAAAGCTTAGGAAAGGCAT 59.335 34.615 0.00 0.00 32.98 4.40
3699 4653 2.752354 CCGAAAAGGTGCCATAACATGA 59.248 45.455 0.00 0.00 34.51 3.07
3700 4654 3.149436 CCGAAAAGGTGCCATAACATG 57.851 47.619 0.00 0.00 34.51 3.21
3740 4694 3.369471 CCTCAACACAGAACATACCGGAT 60.369 47.826 9.46 0.00 0.00 4.18
3742 4696 2.289444 ACCTCAACACAGAACATACCGG 60.289 50.000 0.00 0.00 0.00 5.28
3771 4725 0.393537 GCCATTCACCACCAGAGAGG 60.394 60.000 0.00 0.00 45.67 3.69
3782 4736 2.508526 ACCAACTCAGAAGCCATTCAC 58.491 47.619 0.00 0.00 37.94 3.18
3788 4742 4.379918 GCAAGAAATACCAACTCAGAAGCC 60.380 45.833 0.00 0.00 0.00 4.35
3789 4743 4.216257 TGCAAGAAATACCAACTCAGAAGC 59.784 41.667 0.00 0.00 0.00 3.86
3790 4744 5.947228 TGCAAGAAATACCAACTCAGAAG 57.053 39.130 0.00 0.00 0.00 2.85
3809 4767 5.940192 ACAGTCTGACGAAATAATTTGCA 57.060 34.783 6.91 0.00 0.00 4.08
3810 4768 6.412072 GCATACAGTCTGACGAAATAATTTGC 59.588 38.462 6.91 0.00 0.00 3.68
3811 4769 7.463544 TGCATACAGTCTGACGAAATAATTTG 58.536 34.615 6.91 0.00 0.00 2.32
3812 4770 7.201644 CCTGCATACAGTCTGACGAAATAATTT 60.202 37.037 6.91 0.00 42.81 1.82
3813 4771 6.258727 CCTGCATACAGTCTGACGAAATAATT 59.741 38.462 6.91 0.00 42.81 1.40
3815 4773 5.109210 CCTGCATACAGTCTGACGAAATAA 58.891 41.667 6.91 0.00 42.81 1.40
3817 4775 3.525537 CCTGCATACAGTCTGACGAAAT 58.474 45.455 6.91 0.00 42.81 2.17
3818 4776 2.353704 CCCTGCATACAGTCTGACGAAA 60.354 50.000 6.91 0.00 42.81 3.46
3821 4779 0.532573 ACCCTGCATACAGTCTGACG 59.467 55.000 6.91 0.34 42.81 4.35
3822 4780 5.531122 TTATACCCTGCATACAGTCTGAC 57.469 43.478 6.91 0.00 42.81 3.51
3823 4781 5.012046 CCATTATACCCTGCATACAGTCTGA 59.988 44.000 6.91 0.00 42.81 3.27
3824 4782 5.221722 ACCATTATACCCTGCATACAGTCTG 60.222 44.000 0.00 0.00 42.81 3.51
3825 4783 4.907875 ACCATTATACCCTGCATACAGTCT 59.092 41.667 0.00 0.00 42.81 3.24
3828 4786 5.003804 GGAACCATTATACCCTGCATACAG 58.996 45.833 0.00 0.00 44.05 2.74
3830 4788 4.980573 TGGAACCATTATACCCTGCATAC 58.019 43.478 0.00 0.00 0.00 2.39
3831 4789 5.103898 TGTTGGAACCATTATACCCTGCATA 60.104 40.000 0.00 0.00 0.00 3.14
3832 4790 4.215109 GTTGGAACCATTATACCCTGCAT 58.785 43.478 0.00 0.00 0.00 3.96
3833 4791 3.010696 TGTTGGAACCATTATACCCTGCA 59.989 43.478 0.00 0.00 0.00 4.41
3835 4793 5.468746 CGTATGTTGGAACCATTATACCCTG 59.531 44.000 15.57 5.51 0.00 4.45
3836 4794 5.455612 CCGTATGTTGGAACCATTATACCCT 60.456 44.000 15.57 0.08 0.00 4.34
3838 4796 5.613329 TCCGTATGTTGGAACCATTATACC 58.387 41.667 15.57 0.00 30.98 2.73
3839 4797 6.285990 ACTCCGTATGTTGGAACCATTATAC 58.714 40.000 13.26 13.26 34.44 1.47
3840 4798 6.488769 ACTCCGTATGTTGGAACCATTATA 57.511 37.500 0.00 0.00 34.44 0.98
3843 4801 3.713826 ACTCCGTATGTTGGAACCATT 57.286 42.857 0.00 0.00 34.44 3.16
3855 4813 9.751542 CTTGAGAATTTCAATACTACTCCGTAT 57.248 33.333 0.00 0.00 44.48 3.06
3858 4816 7.010552 CCACTTGAGAATTTCAATACTACTCCG 59.989 40.741 0.00 0.00 44.48 4.63
3859 4817 7.201652 GCCACTTGAGAATTTCAATACTACTCC 60.202 40.741 0.00 0.00 44.48 3.85
3861 4819 6.599638 GGCCACTTGAGAATTTCAATACTACT 59.400 38.462 0.00 0.00 44.48 2.57
3862 4820 6.599638 AGGCCACTTGAGAATTTCAATACTAC 59.400 38.462 5.01 0.00 44.48 2.73
3863 4821 6.721318 AGGCCACTTGAGAATTTCAATACTA 58.279 36.000 5.01 0.00 44.48 1.82
3864 4822 5.574188 AGGCCACTTGAGAATTTCAATACT 58.426 37.500 5.01 0.00 44.48 2.12
3865 4823 5.415701 TGAGGCCACTTGAGAATTTCAATAC 59.584 40.000 5.01 0.00 44.48 1.89
3866 4824 5.569355 TGAGGCCACTTGAGAATTTCAATA 58.431 37.500 5.01 0.00 44.48 1.90
3867 4825 4.410099 TGAGGCCACTTGAGAATTTCAAT 58.590 39.130 5.01 0.00 44.48 2.57
3868 4826 3.822735 CTGAGGCCACTTGAGAATTTCAA 59.177 43.478 5.01 3.95 43.40 2.69
3869 4827 3.415212 CTGAGGCCACTTGAGAATTTCA 58.585 45.455 5.01 0.00 0.00 2.69
3870 4828 2.163211 GCTGAGGCCACTTGAGAATTTC 59.837 50.000 5.01 0.00 0.00 2.17
3871 4829 2.165998 GCTGAGGCCACTTGAGAATTT 58.834 47.619 5.01 0.00 0.00 1.82
3889 4847 2.760385 GGGTCTAGCTGACGGGCT 60.760 66.667 0.00 5.28 46.24 5.19
3896 4854 0.687354 AACACACCAGGGTCTAGCTG 59.313 55.000 0.00 0.00 0.00 4.24
3901 4859 1.692519 GAGTACAACACACCAGGGTCT 59.307 52.381 0.00 0.00 0.00 3.85
3903 4861 0.763035 GGAGTACAACACACCAGGGT 59.237 55.000 0.00 0.00 37.79 4.34
3904 4862 0.036306 GGGAGTACAACACACCAGGG 59.964 60.000 0.00 0.00 39.51 4.45
3905 4863 1.056660 AGGGAGTACAACACACCAGG 58.943 55.000 0.00 0.00 39.51 4.45
3907 4865 2.240160 ACAAAGGGAGTACAACACACCA 59.760 45.455 0.00 0.00 39.51 4.17
3908 4866 2.876550 GACAAAGGGAGTACAACACACC 59.123 50.000 0.00 0.00 37.18 4.16
3909 4867 2.876550 GGACAAAGGGAGTACAACACAC 59.123 50.000 0.00 0.00 0.00 3.82
3910 4868 2.158726 GGGACAAAGGGAGTACAACACA 60.159 50.000 0.00 0.00 0.00 3.72
3912 4870 2.128535 TGGGACAAAGGGAGTACAACA 58.871 47.619 0.00 0.00 31.92 3.33
3971 4929 9.799106 CCTCTGTCCCATAATATAAGATGTTTT 57.201 33.333 0.00 0.00 0.00 2.43
3972 4930 8.386264 CCCTCTGTCCCATAATATAAGATGTTT 58.614 37.037 0.00 0.00 0.00 2.83
3973 4931 7.739444 TCCCTCTGTCCCATAATATAAGATGTT 59.261 37.037 0.00 0.00 0.00 2.71
3974 4932 7.181125 GTCCCTCTGTCCCATAATATAAGATGT 59.819 40.741 0.00 0.00 0.00 3.06
3975 4933 7.401493 AGTCCCTCTGTCCCATAATATAAGATG 59.599 40.741 0.00 0.00 0.00 2.90
3976 4934 7.491681 AGTCCCTCTGTCCCATAATATAAGAT 58.508 38.462 0.00 0.00 0.00 2.40
3977 4935 6.875469 AGTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
3978 4936 7.674348 TGTAGTCCCTCTGTCCCATAATATAAG 59.326 40.741 0.00 0.00 0.00 1.73
3979 4937 7.541074 TGTAGTCCCTCTGTCCCATAATATAA 58.459 38.462 0.00 0.00 0.00 0.98
3980 4938 7.111136 TGTAGTCCCTCTGTCCCATAATATA 57.889 40.000 0.00 0.00 0.00 0.86
3981 4939 5.977533 TGTAGTCCCTCTGTCCCATAATAT 58.022 41.667 0.00 0.00 0.00 1.28
3982 4940 5.412617 TGTAGTCCCTCTGTCCCATAATA 57.587 43.478 0.00 0.00 0.00 0.98
3983 4941 4.280789 TGTAGTCCCTCTGTCCCATAAT 57.719 45.455 0.00 0.00 0.00 1.28
3984 4942 3.769189 TGTAGTCCCTCTGTCCCATAA 57.231 47.619 0.00 0.00 0.00 1.90
3985 4943 3.967326 CAATGTAGTCCCTCTGTCCCATA 59.033 47.826 0.00 0.00 0.00 2.74
3986 4944 2.774234 CAATGTAGTCCCTCTGTCCCAT 59.226 50.000 0.00 0.00 0.00 4.00
3987 4945 2.187958 CAATGTAGTCCCTCTGTCCCA 58.812 52.381 0.00 0.00 0.00 4.37
3988 4946 2.188817 ACAATGTAGTCCCTCTGTCCC 58.811 52.381 0.00 0.00 0.00 4.46
3989 4947 4.024670 AGTACAATGTAGTCCCTCTGTCC 58.975 47.826 0.00 0.00 0.00 4.02
3990 4948 4.678309 GCAGTACAATGTAGTCCCTCTGTC 60.678 50.000 0.00 0.00 0.00 3.51
3991 4949 3.195825 GCAGTACAATGTAGTCCCTCTGT 59.804 47.826 0.00 0.00 0.00 3.41
3992 4950 3.449018 AGCAGTACAATGTAGTCCCTCTG 59.551 47.826 0.00 0.40 0.00 3.35
3993 4951 3.449018 CAGCAGTACAATGTAGTCCCTCT 59.551 47.826 0.00 0.00 0.00 3.69
3994 4952 3.195825 ACAGCAGTACAATGTAGTCCCTC 59.804 47.826 0.00 0.00 0.00 4.30
3995 4953 3.055819 CACAGCAGTACAATGTAGTCCCT 60.056 47.826 0.00 0.00 0.00 4.20
3996 4954 3.056107 TCACAGCAGTACAATGTAGTCCC 60.056 47.826 0.00 0.00 0.00 4.46
3997 4955 4.188247 TCACAGCAGTACAATGTAGTCC 57.812 45.455 0.00 0.00 0.00 3.85
3998 4956 4.033358 GCATCACAGCAGTACAATGTAGTC 59.967 45.833 0.00 0.00 0.00 2.59
3999 4957 3.935203 GCATCACAGCAGTACAATGTAGT 59.065 43.478 0.00 0.00 0.00 2.73
4000 4958 3.310774 GGCATCACAGCAGTACAATGTAG 59.689 47.826 0.00 0.00 35.83 2.74
4001 4959 3.055167 AGGCATCACAGCAGTACAATGTA 60.055 43.478 0.00 0.00 35.83 2.29
4002 4960 2.086869 GGCATCACAGCAGTACAATGT 58.913 47.619 0.00 0.00 35.83 2.71
4003 4961 2.353889 GAGGCATCACAGCAGTACAATG 59.646 50.000 0.00 0.00 35.83 2.82
4004 4962 2.238144 AGAGGCATCACAGCAGTACAAT 59.762 45.455 0.00 0.00 35.83 2.71
4005 4963 1.625315 AGAGGCATCACAGCAGTACAA 59.375 47.619 0.00 0.00 35.83 2.41
4006 4964 1.205655 GAGAGGCATCACAGCAGTACA 59.794 52.381 0.00 0.00 35.83 2.90
4007 4965 1.800655 CGAGAGGCATCACAGCAGTAC 60.801 57.143 0.00 0.00 35.83 2.73
4008 4966 0.457443 CGAGAGGCATCACAGCAGTA 59.543 55.000 0.00 0.00 35.83 2.74
4009 4967 1.217511 CGAGAGGCATCACAGCAGT 59.782 57.895 0.00 0.00 35.83 4.40
4010 4968 2.172372 GCGAGAGGCATCACAGCAG 61.172 63.158 0.00 0.00 42.87 4.24
4027 4985 1.003759 CAGAGCAGAATCAATGAGCGC 60.004 52.381 0.00 0.00 0.00 5.92
4037 4995 7.254727 GCGAAATTTCTAATCTCAGAGCAGAAT 60.255 37.037 15.92 0.00 0.00 2.40
4052 5010 6.090898 GCTCAGTTCAGTAAGCGAAATTTCTA 59.909 38.462 15.92 0.00 0.00 2.10
4053 5011 5.106908 GCTCAGTTCAGTAAGCGAAATTTCT 60.107 40.000 15.92 0.35 0.00 2.52
4054 5012 5.082723 GCTCAGTTCAGTAAGCGAAATTTC 58.917 41.667 8.20 8.20 0.00 2.17
4055 5013 4.757149 AGCTCAGTTCAGTAAGCGAAATTT 59.243 37.500 0.00 0.00 39.72 1.82
4056 5014 4.319177 AGCTCAGTTCAGTAAGCGAAATT 58.681 39.130 0.00 0.00 39.72 1.82
4057 5015 3.931578 AGCTCAGTTCAGTAAGCGAAAT 58.068 40.909 0.00 0.00 39.72 2.17
4058 5016 3.386768 AGCTCAGTTCAGTAAGCGAAA 57.613 42.857 0.00 0.00 39.72 3.46
4059 5017 3.386768 AAGCTCAGTTCAGTAAGCGAA 57.613 42.857 0.00 0.00 39.72 4.70
4060 5018 4.022242 ACTTAAGCTCAGTTCAGTAAGCGA 60.022 41.667 1.29 0.00 39.72 4.93
4061 5019 4.090642 CACTTAAGCTCAGTTCAGTAAGCG 59.909 45.833 1.29 0.00 39.72 4.68
4062 5020 4.143009 GCACTTAAGCTCAGTTCAGTAAGC 60.143 45.833 1.29 0.00 34.95 3.09
4063 5021 5.233988 AGCACTTAAGCTCAGTTCAGTAAG 58.766 41.667 1.29 0.00 42.18 2.34
4064 5022 5.215252 AGCACTTAAGCTCAGTTCAGTAA 57.785 39.130 1.29 0.00 42.18 2.24
4065 5023 4.873746 AGCACTTAAGCTCAGTTCAGTA 57.126 40.909 1.29 0.00 42.18 2.74
4066 5024 3.760580 AGCACTTAAGCTCAGTTCAGT 57.239 42.857 1.29 0.00 42.18 3.41
4067 5025 4.083590 GGAAAGCACTTAAGCTCAGTTCAG 60.084 45.833 1.29 0.00 45.89 3.02
4068 5026 3.815401 GGAAAGCACTTAAGCTCAGTTCA 59.185 43.478 1.29 0.00 45.89 3.18
4069 5027 3.815401 TGGAAAGCACTTAAGCTCAGTTC 59.185 43.478 1.29 0.67 45.89 3.01
4070 5028 3.820557 TGGAAAGCACTTAAGCTCAGTT 58.179 40.909 1.29 0.00 45.89 3.16
4071 5029 3.492102 TGGAAAGCACTTAAGCTCAGT 57.508 42.857 1.29 0.00 45.89 3.41
4072 5030 5.382618 AAATGGAAAGCACTTAAGCTCAG 57.617 39.130 1.29 0.00 45.89 3.35
4073 5031 5.789643 AAAATGGAAAGCACTTAAGCTCA 57.210 34.783 1.29 0.00 45.89 4.26
4074 5032 6.808704 CCTAAAAATGGAAAGCACTTAAGCTC 59.191 38.462 1.29 0.00 45.89 4.09
4076 5034 5.348724 GCCTAAAAATGGAAAGCACTTAAGC 59.651 40.000 1.29 0.00 0.00 3.09
4077 5035 6.454795 TGCCTAAAAATGGAAAGCACTTAAG 58.545 36.000 0.00 0.00 0.00 1.85
4078 5036 6.266558 TCTGCCTAAAAATGGAAAGCACTTAA 59.733 34.615 0.00 0.00 0.00 1.85
4079 5037 5.772672 TCTGCCTAAAAATGGAAAGCACTTA 59.227 36.000 0.00 0.00 0.00 2.24
4080 5038 4.588528 TCTGCCTAAAAATGGAAAGCACTT 59.411 37.500 0.00 0.00 0.00 3.16
4081 5039 4.151883 TCTGCCTAAAAATGGAAAGCACT 58.848 39.130 0.00 0.00 0.00 4.40
4082 5040 4.488879 CTCTGCCTAAAAATGGAAAGCAC 58.511 43.478 0.00 0.00 0.00 4.40
4083 5041 3.056607 GCTCTGCCTAAAAATGGAAAGCA 60.057 43.478 0.00 0.00 0.00 3.91
4084 5042 3.194329 AGCTCTGCCTAAAAATGGAAAGC 59.806 43.478 0.00 0.00 0.00 3.51
4085 5043 5.397142 AAGCTCTGCCTAAAAATGGAAAG 57.603 39.130 0.00 0.00 0.00 2.62
4086 5044 6.909550 TTAAGCTCTGCCTAAAAATGGAAA 57.090 33.333 0.00 0.00 0.00 3.13
4087 5045 6.266558 TGTTTAAGCTCTGCCTAAAAATGGAA 59.733 34.615 0.00 0.00 28.25 3.53
4088 5046 5.772672 TGTTTAAGCTCTGCCTAAAAATGGA 59.227 36.000 0.00 0.00 28.25 3.41
4089 5047 6.024552 TGTTTAAGCTCTGCCTAAAAATGG 57.975 37.500 0.00 0.00 28.25 3.16
4090 5048 8.538409 AAATGTTTAAGCTCTGCCTAAAAATG 57.462 30.769 0.00 0.00 27.09 2.32
4091 5049 8.992073 CAAAATGTTTAAGCTCTGCCTAAAAAT 58.008 29.630 0.00 0.00 27.39 1.82
4092 5050 8.200792 TCAAAATGTTTAAGCTCTGCCTAAAAA 58.799 29.630 0.00 0.00 28.25 1.94
4093 5051 7.651704 GTCAAAATGTTTAAGCTCTGCCTAAAA 59.348 33.333 0.00 0.00 28.25 1.52
4094 5052 7.014230 AGTCAAAATGTTTAAGCTCTGCCTAAA 59.986 33.333 0.00 0.00 0.00 1.85
4095 5053 6.490040 AGTCAAAATGTTTAAGCTCTGCCTAA 59.510 34.615 0.00 0.00 0.00 2.69
4096 5054 6.003950 AGTCAAAATGTTTAAGCTCTGCCTA 58.996 36.000 0.00 0.00 0.00 3.93
4097 5055 4.829492 AGTCAAAATGTTTAAGCTCTGCCT 59.171 37.500 0.00 0.00 0.00 4.75
4098 5056 5.126396 AGTCAAAATGTTTAAGCTCTGCC 57.874 39.130 0.00 0.00 0.00 4.85
4099 5057 8.748380 AAATAGTCAAAATGTTTAAGCTCTGC 57.252 30.769 0.00 0.00 0.00 4.26
4137 5095 5.366477 AGTTTTCCCCATGACTGTTTCAAAT 59.634 36.000 0.00 0.00 37.92 2.32
4159 5117 4.018779 TCCAAATATTTTCAGGTCGGGAGT 60.019 41.667 0.00 0.00 0.00 3.85
4180 5138 6.599638 AGTTACTCTGCATCAATTACCTTTCC 59.400 38.462 0.00 0.00 0.00 3.13
4187 5145 5.289595 CCGCTAGTTACTCTGCATCAATTA 58.710 41.667 9.99 0.00 0.00 1.40
4196 5154 1.103803 TGAGGCCGCTAGTTACTCTG 58.896 55.000 8.34 0.00 0.00 3.35
4198 5156 1.681793 TCATGAGGCCGCTAGTTACTC 59.318 52.381 8.34 0.00 0.00 2.59
4206 5164 0.326264 AGAAAACTCATGAGGCCGCT 59.674 50.000 26.08 14.63 0.00 5.52
4207 5165 1.168714 AAGAAAACTCATGAGGCCGC 58.831 50.000 26.08 12.71 0.00 6.53
4208 5166 5.123820 TCAAATAAGAAAACTCATGAGGCCG 59.876 40.000 26.08 2.75 0.00 6.13
4210 5168 7.867403 TGTTTCAAATAAGAAAACTCATGAGGC 59.133 33.333 26.08 12.38 39.05 4.70
4231 5189 7.610305 TGGTTTTCCTATAATGAGGAGTGTTTC 59.390 37.037 0.00 0.00 46.43 2.78
4247 5208 8.893563 AACCTCATGAATATTTGGTTTTCCTA 57.106 30.769 8.57 0.00 41.38 2.94
4259 5220 9.547753 GTACTGTACATCAAACCTCATGAATAT 57.452 33.333 12.89 0.00 0.00 1.28
4272 5233 4.338012 TCGAAGGGAGTACTGTACATCAA 58.662 43.478 19.27 0.00 0.00 2.57
4282 5243 9.490379 ACAAATAATATGAATCGAAGGGAGTAC 57.510 33.333 0.00 0.00 0.00 2.73
4337 5309 9.265862 CTCCCTCTGATCCATATTACTTATCTT 57.734 37.037 0.00 0.00 0.00 2.40
4338 5310 8.405850 ACTCCCTCTGATCCATATTACTTATCT 58.594 37.037 0.00 0.00 0.00 1.98
4341 5313 8.679725 AGTACTCCCTCTGATCCATATTACTTA 58.320 37.037 0.00 0.00 0.00 2.24
4352 5324 6.154706 TGGAAAGTTTAGTACTCCCTCTGATC 59.845 42.308 0.00 0.00 35.54 2.92
4356 5328 6.023603 TCATGGAAAGTTTAGTACTCCCTCT 58.976 40.000 0.00 0.00 35.54 3.69
4361 5333 9.612620 CATTTGTTCATGGAAAGTTTAGTACTC 57.387 33.333 0.00 0.00 35.54 2.59
4369 5341 6.762661 CCTTTCACATTTGTTCATGGAAAGTT 59.237 34.615 14.33 0.00 38.36 2.66
4374 5346 4.478203 TCCCTTTCACATTTGTTCATGGA 58.522 39.130 0.00 0.00 0.00 3.41
4405 5377 2.315176 CATCCTCCTACCCAGAGTCTG 58.685 57.143 13.56 13.56 0.00 3.51
4406 5378 1.412361 GCATCCTCCTACCCAGAGTCT 60.412 57.143 0.00 0.00 0.00 3.24
4407 5379 1.044611 GCATCCTCCTACCCAGAGTC 58.955 60.000 0.00 0.00 0.00 3.36
4408 5380 0.339859 TGCATCCTCCTACCCAGAGT 59.660 55.000 0.00 0.00 0.00 3.24
4409 5381 1.727062 ATGCATCCTCCTACCCAGAG 58.273 55.000 0.00 0.00 0.00 3.35
4459 5431 3.840666 TCTCTGTTTGGGAACTCAGCTAT 59.159 43.478 0.00 0.00 36.70 2.97
4464 5436 8.988060 TGTAATATATCTCTGTTTGGGAACTCA 58.012 33.333 0.00 0.00 36.70 3.41
4493 5465 2.650116 CCCTGCTAGACTGGTGCGT 61.650 63.158 0.00 0.00 35.64 5.24
4494 5466 2.185350 CCCTGCTAGACTGGTGCG 59.815 66.667 0.00 0.00 35.64 5.34
4495 5467 1.261238 ACTCCCTGCTAGACTGGTGC 61.261 60.000 0.00 0.00 35.64 5.01
4496 5468 1.205893 GAACTCCCTGCTAGACTGGTG 59.794 57.143 0.00 0.00 35.64 4.17
4497 5469 1.562783 GAACTCCCTGCTAGACTGGT 58.437 55.000 0.00 0.00 35.64 4.00
4498 5470 0.827368 GGAACTCCCTGCTAGACTGG 59.173 60.000 0.00 0.00 37.13 4.00
4518 5490 4.050553 AGAACATGGAAAAACAACGCATG 58.949 39.130 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.