Multiple sequence alignment - TraesCS3A01G333000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G333000 chr3A 100.000 4527 0 0 1 4527 577566510 577561984 0.000000e+00 8360.0
1 TraesCS3A01G333000 chr3A 88.278 691 42 23 2817 3473 591692646 591691961 0.000000e+00 791.0
2 TraesCS3A01G333000 chr3B 90.137 3802 187 74 192 3887 574684447 574680728 0.000000e+00 4771.0
3 TraesCS3A01G333000 chr3B 94.330 194 11 0 4334 4527 574680144 574679951 9.520000e-77 298.0
4 TraesCS3A01G333000 chr3B 94.350 177 10 0 3112 3288 740379587 740379763 5.770000e-69 272.0
5 TraesCS3A01G333000 chr3B 95.385 130 6 0 3366 3495 740380375 740380504 1.650000e-49 207.0
6 TraesCS3A01G333000 chr3D 90.463 2485 102 58 1213 3610 438609938 438607502 0.000000e+00 3151.0
7 TraesCS3A01G333000 chr3D 88.597 1219 76 33 2 1189 438611107 438609921 0.000000e+00 1423.0
8 TraesCS3A01G333000 chr3D 96.000 200 8 0 4328 4527 438568883 438568684 4.370000e-85 326.0
9 TraesCS3A01G333000 chr3D 83.562 219 10 13 3660 3877 438607486 438607293 1.000000e-41 182.0
10 TraesCS3A01G333000 chr3D 86.260 131 9 8 4207 4333 438569036 438568911 2.840000e-27 134.0
11 TraesCS3A01G333000 chr7A 88.865 943 65 18 2114 3021 199441765 199440828 0.000000e+00 1123.0
12 TraesCS3A01G333000 chr7A 100.000 31 0 0 3868 3898 727858902 727858872 1.760000e-04 58.4
13 TraesCS3A01G333000 chr7D 86.971 921 66 22 2627 3511 70219789 70220691 0.000000e+00 987.0
14 TraesCS3A01G333000 chr7D 87.080 387 31 11 3112 3496 556663310 556662941 1.950000e-113 420.0
15 TraesCS3A01G333000 chr7D 100.000 31 0 0 3868 3898 568457985 568457955 1.760000e-04 58.4
16 TraesCS3A01G333000 chrUn 88.242 842 66 15 2165 2977 295946086 295945249 0.000000e+00 976.0
17 TraesCS3A01G333000 chr4A 88.242 842 66 15 2165 2977 611287372 611288209 0.000000e+00 976.0
18 TraesCS3A01G333000 chr6A 87.302 693 43 19 2817 3473 165817079 165817762 0.000000e+00 750.0
19 TraesCS3A01G333000 chr5D 87.080 387 33 8 3112 3496 561348647 561348276 5.410000e-114 422.0
20 TraesCS3A01G333000 chr5D 83.486 218 31 5 2820 3033 495402517 495402301 9.930000e-47 198.0
21 TraesCS3A01G333000 chr2A 87.047 386 35 8 3112 3496 272967808 272967437 5.410000e-114 422.0
22 TraesCS3A01G333000 chr2A 86.269 386 38 8 3112 3496 272956440 272956811 5.450000e-109 405.0
23 TraesCS3A01G333000 chr1A 86.822 387 34 9 3112 3496 346785341 346785712 2.520000e-112 416.0
24 TraesCS3A01G333000 chr2B 93.785 177 11 0 3112 3288 762185598 762185422 2.680000e-67 267.0
25 TraesCS3A01G333000 chr5B 91.071 56 2 2 4331 4383 543293183 543293238 6.280000e-09 73.1
26 TraesCS3A01G333000 chr4B 85.938 64 7 2 3041 3103 624108550 624108612 2.920000e-07 67.6
27 TraesCS3A01G333000 chr1D 100.000 31 0 0 3868 3898 66759317 66759287 1.760000e-04 58.4
28 TraesCS3A01G333000 chr1D 100.000 30 0 0 3869 3898 370168359 370168330 6.330000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G333000 chr3A 577561984 577566510 4526 True 8360.000000 8360 100.000000 1 4527 1 chr3A.!!$R1 4526
1 TraesCS3A01G333000 chr3A 591691961 591692646 685 True 791.000000 791 88.278000 2817 3473 1 chr3A.!!$R2 656
2 TraesCS3A01G333000 chr3B 574679951 574684447 4496 True 2534.500000 4771 92.233500 192 4527 2 chr3B.!!$R1 4335
3 TraesCS3A01G333000 chr3B 740379587 740380504 917 False 239.500000 272 94.867500 3112 3495 2 chr3B.!!$F1 383
4 TraesCS3A01G333000 chr3D 438607293 438611107 3814 True 1585.333333 3151 87.540667 2 3877 3 chr3D.!!$R2 3875
5 TraesCS3A01G333000 chr7A 199440828 199441765 937 True 1123.000000 1123 88.865000 2114 3021 1 chr7A.!!$R1 907
6 TraesCS3A01G333000 chr7D 70219789 70220691 902 False 987.000000 987 86.971000 2627 3511 1 chr7D.!!$F1 884
7 TraesCS3A01G333000 chrUn 295945249 295946086 837 True 976.000000 976 88.242000 2165 2977 1 chrUn.!!$R1 812
8 TraesCS3A01G333000 chr4A 611287372 611288209 837 False 976.000000 976 88.242000 2165 2977 1 chr4A.!!$F1 812
9 TraesCS3A01G333000 chr6A 165817079 165817762 683 False 750.000000 750 87.302000 2817 3473 1 chr6A.!!$F1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 822 0.033109 CCCCAATCCCTCCAAGAACC 60.033 60.0 0.0 0.0 0.00 3.62 F
1854 1940 0.321671 TCAAGAACGCCCAGGAGAAG 59.678 55.0 0.0 0.0 0.00 2.85 F
2727 2838 0.315886 TCGCCTGCAAGTACGAAGAA 59.684 50.0 0.0 0.0 37.63 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2283 0.107945 GGCTCCTTGCACAGGTCTAG 60.108 60.0 12.71 6.38 44.37 2.43 R
2746 2857 0.545646 AGCAGAGGGATTCTTCAGCC 59.454 55.0 0.00 0.00 32.41 4.85 R
4268 5199 0.035881 TCTGGCAGAGCTGTCAAAGG 59.964 55.0 14.43 0.00 45.38 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.727123 TTTTGTCCAGAGTTCCTGCA 57.273 45.000 0.00 0.00 41.57 4.41
45 46 2.727123 TTTGTCCAGAGTTCCTGCAA 57.273 45.000 0.00 0.00 41.57 4.08
50 51 1.081892 CCAGAGTTCCTGCAATGTCG 58.918 55.000 0.00 0.00 41.57 4.35
55 56 0.874390 GTTCCTGCAATGTCGAAGCA 59.126 50.000 0.00 0.00 36.72 3.91
58 59 1.089112 CCTGCAATGTCGAAGCATCA 58.911 50.000 3.98 0.00 37.68 3.07
67 68 6.507456 GCAATGTCGAAGCATCATGAAATTTC 60.507 38.462 11.41 11.41 0.00 2.17
71 72 5.287035 GTCGAAGCATCATGAAATTTCCAAC 59.713 40.000 15.48 1.22 0.00 3.77
75 76 5.962433 AGCATCATGAAATTTCCAACTGAG 58.038 37.500 15.48 8.23 0.00 3.35
76 77 4.565564 GCATCATGAAATTTCCAACTGAGC 59.434 41.667 15.48 12.66 0.00 4.26
80 81 7.523293 TCATGAAATTTCCAACTGAGCTAAA 57.477 32.000 15.48 0.00 0.00 1.85
85 86 4.911514 TTTCCAACTGAGCTAAAACCAC 57.088 40.909 0.00 0.00 0.00 4.16
86 87 3.569194 TCCAACTGAGCTAAAACCACA 57.431 42.857 0.00 0.00 0.00 4.17
88 89 5.235850 TCCAACTGAGCTAAAACCACATA 57.764 39.130 0.00 0.00 0.00 2.29
90 91 5.705441 TCCAACTGAGCTAAAACCACATAAG 59.295 40.000 0.00 0.00 0.00 1.73
103 104 8.496872 AAAACCACATAAGTTATTTTCGAACG 57.503 30.769 0.00 0.00 31.85 3.95
104 105 6.173191 ACCACATAAGTTATTTTCGAACGG 57.827 37.500 0.00 0.00 31.85 4.44
107 108 6.456449 CCACATAAGTTATTTTCGAACGGAGG 60.456 42.308 0.00 0.00 31.85 4.30
114 115 8.953368 AGTTATTTTCGAACGGAGGTTATATT 57.047 30.769 0.00 0.00 36.24 1.28
118 143 4.126208 TCGAACGGAGGTTATATTGCAA 57.874 40.909 0.00 0.00 36.24 4.08
123 148 6.293407 CGAACGGAGGTTATATTGCAAATGAT 60.293 38.462 1.71 0.00 36.24 2.45
127 152 5.774690 GGAGGTTATATTGCAAATGATCCCA 59.225 40.000 1.71 0.00 0.00 4.37
131 156 6.239402 GGTTATATTGCAAATGATCCCAAGCT 60.239 38.462 1.71 0.00 0.00 3.74
132 157 3.814005 ATTGCAAATGATCCCAAGCTC 57.186 42.857 1.71 0.00 0.00 4.09
133 158 1.097232 TGCAAATGATCCCAAGCTCG 58.903 50.000 0.00 0.00 0.00 5.03
161 186 2.364324 CCGCCCTGTATAGAAACTGCTA 59.636 50.000 0.00 0.00 0.00 3.49
178 203 8.743085 AAACTGCTATATTCACATGACTTGAT 57.257 30.769 0.00 0.00 0.00 2.57
242 271 8.793592 TGGCTTTAGGAAAGAGTTAAAGAATTC 58.206 33.333 0.00 0.00 41.02 2.17
260 289 5.179368 AGAATTCGACATTTTCTCGCTTTCA 59.821 36.000 0.00 0.00 30.50 2.69
270 299 4.452890 TTCTCGCTTTCAGAAAAAGTCG 57.547 40.909 0.00 0.00 0.00 4.18
289 318 3.354055 GTCGAAGAATTTCACGTTTTCGC 59.646 43.478 10.96 5.32 43.62 4.70
378 410 5.069516 GGCCAGTGAATGAATGAACCATAAT 59.930 40.000 0.00 0.00 0.00 1.28
379 411 6.265196 GGCCAGTGAATGAATGAACCATAATA 59.735 38.462 0.00 0.00 0.00 0.98
380 412 7.201902 GGCCAGTGAATGAATGAACCATAATAA 60.202 37.037 0.00 0.00 0.00 1.40
400 436 6.822073 ATAAAAAGAAAGAAAACCACACGC 57.178 33.333 0.00 0.00 0.00 5.34
415 451 3.325870 CACACGCCAAAGAGATCTTGTA 58.674 45.455 0.00 0.00 36.12 2.41
432 468 6.441093 TCTTGTAAATCCGTCGTACATACT 57.559 37.500 0.00 0.00 0.00 2.12
433 469 7.552458 TCTTGTAAATCCGTCGTACATACTA 57.448 36.000 0.00 0.00 0.00 1.82
436 472 7.082700 TGTAAATCCGTCGTACATACTACAA 57.917 36.000 0.00 0.00 0.00 2.41
437 473 6.966632 TGTAAATCCGTCGTACATACTACAAC 59.033 38.462 0.00 0.00 0.00 3.32
439 475 5.565592 ATCCGTCGTACATACTACAACAA 57.434 39.130 0.00 0.00 0.00 2.83
440 476 4.722194 TCCGTCGTACATACTACAACAAC 58.278 43.478 0.00 0.00 0.00 3.32
441 477 4.215185 TCCGTCGTACATACTACAACAACA 59.785 41.667 0.00 0.00 0.00 3.33
442 478 4.321745 CCGTCGTACATACTACAACAACAC 59.678 45.833 0.00 0.00 0.00 3.32
443 479 4.911033 CGTCGTACATACTACAACAACACA 59.089 41.667 0.00 0.00 0.00 3.72
535 571 1.669760 CACAACTCGCGCCCCTTTA 60.670 57.895 0.00 0.00 0.00 1.85
715 756 2.663196 CACCCCGACAGGACCTTC 59.337 66.667 0.00 0.00 41.02 3.46
737 778 2.358015 CCGTCCTCGTCCTATATCTCC 58.642 57.143 0.00 0.00 35.01 3.71
781 822 0.033109 CCCCAATCCCTCCAAGAACC 60.033 60.000 0.00 0.00 0.00 3.62
963 1024 0.739112 GCTTCTTCTCCTCGGTGCTG 60.739 60.000 0.00 0.00 0.00 4.41
1083 1147 2.851588 GGGATCCTGCCCTCCCTC 60.852 72.222 12.58 0.00 46.55 4.30
1088 1152 2.655077 ATCCTGCCCTCCCTCTCTCG 62.655 65.000 0.00 0.00 0.00 4.04
1106 1170 5.182380 TCTCTCGTCTTCTTCTTCTTCTTCC 59.818 44.000 0.00 0.00 0.00 3.46
1133 1201 2.690734 GGTTCCCCCTGGGTGGATC 61.691 68.421 19.71 18.16 44.74 3.36
1192 1260 1.792651 AGATGGGTTCTTGGGGGAAAA 59.207 47.619 0.00 0.00 0.00 2.29
1199 1267 0.709992 TCTTGGGGGAAAAGATGGGG 59.290 55.000 0.00 0.00 0.00 4.96
1205 1273 2.179427 GGGGAAAAGATGGGGTTCTTG 58.821 52.381 0.00 0.00 36.12 3.02
1250 1319 1.301479 GTTCGTTTCGGCCCTGACT 60.301 57.895 0.00 0.00 0.00 3.41
1299 1377 7.993821 TGATGCGTTTTTGTTTGATTTCTTA 57.006 28.000 0.00 0.00 0.00 2.10
1305 1383 7.336975 CGTTTTTGTTTGATTTCTTAGCAAGG 58.663 34.615 0.00 0.00 0.00 3.61
1351 1430 3.181497 TGGCTTTCTCTGCGATTAATTGC 60.181 43.478 19.20 19.20 37.70 3.56
1391 1470 4.150451 CGTTTTTGGTCTGAATTGATTGCC 59.850 41.667 0.00 0.00 0.00 4.52
1443 1522 0.740149 TGATGGCGATTTGATGTGGC 59.260 50.000 0.00 0.00 0.00 5.01
1464 1543 3.549794 CTTGATTTGATCCACCTCCTCC 58.450 50.000 0.00 0.00 0.00 4.30
1495 1574 3.214328 TGACTTCTTCTTGTTTCTGCCC 58.786 45.455 0.00 0.00 0.00 5.36
1520 1599 0.893727 CTTTAGGTGGTGGTGGTGGC 60.894 60.000 0.00 0.00 0.00 5.01
1747 1833 5.594777 TCTTCTTCTTCCTATGGAACTCCT 58.405 41.667 0.00 0.00 36.71 3.69
1845 1931 1.743252 CCAGCTCCTCAAGAACGCC 60.743 63.158 0.00 0.00 0.00 5.68
1854 1940 0.321671 TCAAGAACGCCCAGGAGAAG 59.678 55.000 0.00 0.00 0.00 2.85
1867 1953 1.810030 GAGAAGGCCAAGGTACGCG 60.810 63.158 5.01 3.53 0.00 6.01
1905 1994 4.063689 CTCCCTCATCCTGATTTGAATCG 58.936 47.826 0.00 0.00 38.26 3.34
2191 2283 3.695816 GACAGTCAAACACTTTGCTTCC 58.304 45.455 0.00 0.00 40.43 3.46
2366 2459 9.250624 GATATCTACAAATTCTACAAAGTCGCT 57.749 33.333 0.00 0.00 0.00 4.93
2386 2479 4.092968 CGCTGAGGTAAAAACATGTACTCC 59.907 45.833 0.00 0.00 0.00 3.85
2389 2482 6.195600 TGAGGTAAAAACATGTACTCCCTT 57.804 37.500 0.00 0.00 0.00 3.95
2398 2491 3.961408 ACATGTACTCCCTTAGGCAGTAG 59.039 47.826 1.65 0.00 30.91 2.57
2399 2492 4.215908 CATGTACTCCCTTAGGCAGTAGA 58.784 47.826 1.65 1.57 30.91 2.59
2504 2615 2.775890 CTGTTGACAGAATGAGTGCCT 58.224 47.619 5.19 0.00 46.59 4.75
2511 2622 1.078848 GAATGAGTGCCTCGCCAGT 60.079 57.895 0.00 0.00 32.35 4.00
2526 2637 2.159043 CGCCAGTGATTACATGGACTCT 60.159 50.000 9.35 0.00 36.09 3.24
2583 2694 1.475403 TCGACTGGATCCTGGAAGTC 58.525 55.000 21.40 18.76 36.52 3.01
2727 2838 0.315886 TCGCCTGCAAGTACGAAGAA 59.684 50.000 0.00 0.00 37.63 2.52
2730 2841 2.222819 CGCCTGCAAGTACGAAGAAATC 60.223 50.000 0.00 0.00 33.98 2.17
2739 2850 0.984230 ACGAAGAAATCTGGGCTCCA 59.016 50.000 0.00 0.00 0.00 3.86
2748 2859 2.365635 TGGGCTCCAGAGGTAGGC 60.366 66.667 0.00 0.00 37.55 3.93
2749 2860 2.041405 GGGCTCCAGAGGTAGGCT 60.041 66.667 0.00 0.00 38.30 4.58
2750 2861 2.439104 GGGCTCCAGAGGTAGGCTG 61.439 68.421 0.00 0.00 38.30 4.85
2767 2887 2.171448 GGCTGAAGAATCCCTCTGCTTA 59.829 50.000 10.19 0.00 33.37 3.09
2768 2888 3.202097 GCTGAAGAATCCCTCTGCTTAC 58.798 50.000 5.10 0.00 33.37 2.34
2770 2890 3.181329 TGAAGAATCCCTCTGCTTACCA 58.819 45.455 0.00 0.00 33.37 3.25
2771 2891 3.198635 TGAAGAATCCCTCTGCTTACCAG 59.801 47.826 0.00 0.00 43.17 4.00
3034 3201 9.660180 TTTACATTTACATACAGACACAGCATA 57.340 29.630 0.00 0.00 0.00 3.14
3079 3277 3.544684 TGTGTGCTGATGTTTCTCTTGT 58.455 40.909 0.00 0.00 0.00 3.16
3330 4079 4.696479 ACTGAATCCCTATTGTAGCCTG 57.304 45.455 0.00 0.00 0.00 4.85
3331 4080 4.298626 ACTGAATCCCTATTGTAGCCTGA 58.701 43.478 0.00 0.00 0.00 3.86
3334 4094 6.558775 ACTGAATCCCTATTGTAGCCTGAATA 59.441 38.462 0.00 0.00 0.00 1.75
3353 4113 2.202236 ATCATTCAGGGGCACGCACT 62.202 55.000 0.00 0.00 46.88 4.40
3354 4114 2.360350 ATTCAGGGGCACGCACTG 60.360 61.111 6.62 6.62 46.88 3.66
3355 4115 2.894257 ATTCAGGGGCACGCACTGA 61.894 57.895 10.46 10.46 46.88 3.41
3356 4116 3.825160 TTCAGGGGCACGCACTGAC 62.825 63.158 13.18 0.00 46.88 3.51
3357 4117 4.624364 CAGGGGCACGCACTGACA 62.624 66.667 7.04 0.00 46.88 3.58
3358 4118 4.320456 AGGGGCACGCACTGACAG 62.320 66.667 0.00 0.00 46.88 3.51
3359 4119 4.314440 GGGGCACGCACTGACAGA 62.314 66.667 10.08 0.00 42.57 3.41
3360 4120 2.740055 GGGCACGCACTGACAGAG 60.740 66.667 10.08 1.80 0.00 3.35
3361 4121 2.340078 GGCACGCACTGACAGAGA 59.660 61.111 10.08 0.00 0.00 3.10
3362 4122 2.024319 GGCACGCACTGACAGAGAC 61.024 63.158 10.08 0.00 0.00 3.36
3363 4123 1.300156 GCACGCACTGACAGAGACA 60.300 57.895 10.08 0.00 0.00 3.41
3364 4124 0.875908 GCACGCACTGACAGAGACAA 60.876 55.000 10.08 0.00 0.00 3.18
3536 4309 4.842091 GCAAATGAGCTGCCCGCG 62.842 66.667 0.00 0.00 45.59 6.46
3607 4381 0.030101 CATTTCGCCGTGTTGGTTGT 59.970 50.000 0.00 0.00 41.21 3.32
3635 4409 4.906437 CGTTTCTTGCTTTTAGAAGAGTGC 59.094 41.667 0.00 0.00 34.71 4.40
3636 4410 4.732285 TTCTTGCTTTTAGAAGAGTGCG 57.268 40.909 0.00 0.00 34.71 5.34
3637 4411 3.728845 TCTTGCTTTTAGAAGAGTGCGT 58.271 40.909 0.00 0.00 34.71 5.24
3638 4412 3.494626 TCTTGCTTTTAGAAGAGTGCGTG 59.505 43.478 0.00 0.00 34.71 5.34
3643 4417 2.812358 TTAGAAGAGTGCGTGCAAGA 57.188 45.000 2.99 0.00 0.00 3.02
3652 4426 0.749818 TGCGTGCAAGAAGGGTTTGA 60.750 50.000 2.99 0.00 0.00 2.69
3653 4427 0.383949 GCGTGCAAGAAGGGTTTGAA 59.616 50.000 2.99 0.00 0.00 2.69
3654 4428 1.000274 GCGTGCAAGAAGGGTTTGAAT 60.000 47.619 2.99 0.00 0.00 2.57
3656 4430 3.305064 GCGTGCAAGAAGGGTTTGAATAA 60.305 43.478 2.99 0.00 0.00 1.40
3657 4431 4.226761 CGTGCAAGAAGGGTTTGAATAAC 58.773 43.478 0.00 0.00 0.00 1.89
3658 4432 4.261405 CGTGCAAGAAGGGTTTGAATAACA 60.261 41.667 0.00 0.00 0.00 2.41
3669 4446 6.070481 AGGGTTTGAATAACAGTTGTTTGGTT 60.070 34.615 2.46 0.00 39.31 3.67
3703 4480 7.611467 AGGCATATTATCTGACTTGTTGACAAA 59.389 33.333 0.00 0.00 35.15 2.83
3704 4481 7.698130 GGCATATTATCTGACTTGTTGACAAAC 59.302 37.037 0.00 0.00 35.15 2.93
3705 4482 8.454106 GCATATTATCTGACTTGTTGACAAACT 58.546 33.333 0.00 0.00 37.19 2.66
3762 4539 8.945193 ACCTTGGTCTTGGTGTATATATATGTT 58.055 33.333 5.44 0.00 34.90 2.71
3785 4562 2.554462 TCTGGATGCTATCTACGACAGC 59.446 50.000 0.00 0.00 35.82 4.40
3845 4622 8.246871 GTCCTTCTGAATTTCCTCCTAAAAATG 58.753 37.037 0.00 0.00 0.00 2.32
3887 4665 9.994432 CTATCTGTTATTCAAAATCTGAACCAC 57.006 33.333 0.00 0.00 46.80 4.16
3889 4667 7.874940 TCTGTTATTCAAAATCTGAACCACAG 58.125 34.615 15.49 15.49 46.80 3.66
3890 4668 7.502226 TCTGTTATTCAAAATCTGAACCACAGT 59.498 33.333 18.41 0.00 46.80 3.55
3892 4670 7.920151 TGTTATTCAAAATCTGAACCACAGTTG 59.080 33.333 0.00 0.00 46.80 3.16
3894 4672 3.698539 TCAAAATCTGAACCACAGTTGCA 59.301 39.130 0.00 0.00 45.86 4.08
3895 4673 3.996150 AAATCTGAACCACAGTTGCAG 57.004 42.857 0.00 0.00 45.86 4.41
3896 4674 2.645838 ATCTGAACCACAGTTGCAGT 57.354 45.000 0.00 0.00 45.86 4.40
3897 4675 1.667236 TCTGAACCACAGTTGCAGTG 58.333 50.000 0.00 0.00 45.86 3.66
3899 4677 1.745087 CTGAACCACAGTTGCAGTGTT 59.255 47.619 1.16 0.00 41.30 3.32
3972 4802 0.523072 AACTAGCCGCACTGCAATTG 59.477 50.000 0.00 0.00 0.00 2.32
3973 4803 1.226491 CTAGCCGCACTGCAATTGC 60.226 57.895 23.69 23.69 42.50 3.56
3974 4804 1.651240 CTAGCCGCACTGCAATTGCT 61.651 55.000 29.37 9.23 42.66 3.91
3975 4805 1.925415 TAGCCGCACTGCAATTGCTG 61.925 55.000 29.23 29.23 44.21 4.41
3977 4807 1.509463 CCGCACTGCAATTGCTGAT 59.491 52.632 35.13 20.50 41.71 2.90
3979 4809 1.132834 CCGCACTGCAATTGCTGATAA 59.867 47.619 35.13 14.64 41.71 1.75
3980 4810 2.415759 CCGCACTGCAATTGCTGATAAA 60.416 45.455 35.13 13.96 41.71 1.40
3981 4811 3.244156 CGCACTGCAATTGCTGATAAAA 58.756 40.909 35.13 13.28 41.71 1.52
3982 4812 3.674281 CGCACTGCAATTGCTGATAAAAA 59.326 39.130 35.13 12.59 41.71 1.94
3983 4813 4.201551 CGCACTGCAATTGCTGATAAAAAG 60.202 41.667 35.13 22.02 41.71 2.27
3984 4814 4.092383 GCACTGCAATTGCTGATAAAAAGG 59.908 41.667 35.13 15.56 41.71 3.11
3985 4815 4.092383 CACTGCAATTGCTGATAAAAAGGC 59.908 41.667 35.13 6.48 41.71 4.35
3986 4816 3.252400 TGCAATTGCTGATAAAAAGGCG 58.748 40.909 29.37 0.00 42.66 5.52
3987 4817 3.253230 GCAATTGCTGATAAAAAGGCGT 58.747 40.909 23.21 0.00 38.21 5.68
3988 4818 3.679502 GCAATTGCTGATAAAAAGGCGTT 59.320 39.130 23.21 0.00 38.21 4.84
4019 4850 7.652909 CACATTAATTTTTCTTCTCACAGGCAA 59.347 33.333 0.00 0.00 0.00 4.52
4020 4851 7.653311 ACATTAATTTTTCTTCTCACAGGCAAC 59.347 33.333 0.00 0.00 0.00 4.17
4021 4852 5.596836 AATTTTTCTTCTCACAGGCAACA 57.403 34.783 0.00 0.00 41.41 3.33
4022 4853 4.370364 TTTTTCTTCTCACAGGCAACAC 57.630 40.909 0.00 0.00 41.41 3.32
4023 4854 3.281727 TTTCTTCTCACAGGCAACACT 57.718 42.857 0.00 0.00 41.41 3.55
4024 4855 3.281727 TTCTTCTCACAGGCAACACTT 57.718 42.857 0.00 0.00 41.41 3.16
4025 4856 3.281727 TCTTCTCACAGGCAACACTTT 57.718 42.857 0.00 0.00 41.41 2.66
4027 4858 4.127171 TCTTCTCACAGGCAACACTTTAC 58.873 43.478 0.00 0.00 41.41 2.01
4028 4859 3.552132 TCTCACAGGCAACACTTTACA 57.448 42.857 0.00 0.00 41.41 2.41
4029 4860 3.879998 TCTCACAGGCAACACTTTACAA 58.120 40.909 0.00 0.00 41.41 2.41
4030 4861 3.625764 TCTCACAGGCAACACTTTACAAC 59.374 43.478 0.00 0.00 41.41 3.32
4031 4862 3.616219 TCACAGGCAACACTTTACAACT 58.384 40.909 0.00 0.00 41.41 3.16
4032 4863 3.376859 TCACAGGCAACACTTTACAACTG 59.623 43.478 0.00 0.00 41.41 3.16
4033 4864 3.128589 CACAGGCAACACTTTACAACTGT 59.871 43.478 0.00 0.00 38.35 3.55
4034 4865 3.128589 ACAGGCAACACTTTACAACTGTG 59.871 43.478 0.00 0.00 36.66 3.66
4039 4870 5.277825 GCAACACTTTACAACTGTGCAATA 58.722 37.500 0.00 0.00 35.33 1.90
4040 4871 5.746245 GCAACACTTTACAACTGTGCAATAA 59.254 36.000 0.00 0.00 35.33 1.40
4041 4872 6.254589 GCAACACTTTACAACTGTGCAATAAA 59.745 34.615 0.00 0.00 35.33 1.40
4042 4873 7.201478 GCAACACTTTACAACTGTGCAATAAAA 60.201 33.333 0.00 0.00 35.33 1.52
4043 4874 8.651588 CAACACTTTACAACTGTGCAATAAAAA 58.348 29.630 0.00 0.00 35.33 1.94
4080 4911 3.691575 TCGACTCTCTGTCCTTCTGAAT 58.308 45.455 0.00 0.00 42.49 2.57
4094 4925 7.950124 TGTCCTTCTGAATTTCCTCCTTATTTT 59.050 33.333 0.00 0.00 0.00 1.82
4095 4926 8.807118 GTCCTTCTGAATTTCCTCCTTATTTTT 58.193 33.333 0.00 0.00 0.00 1.94
4101 4932 9.639601 CTGAATTTCCTCCTTATTTTTAACACC 57.360 33.333 0.00 0.00 0.00 4.16
4102 4933 9.148879 TGAATTTCCTCCTTATTTTTAACACCA 57.851 29.630 0.00 0.00 0.00 4.17
4103 4934 9.639601 GAATTTCCTCCTTATTTTTAACACCAG 57.360 33.333 0.00 0.00 0.00 4.00
4105 4936 5.887754 TCCTCCTTATTTTTAACACCAGCT 58.112 37.500 0.00 0.00 0.00 4.24
4140 4979 7.557358 ACACATATTTGCACCTTCATATTCTGA 59.443 33.333 0.00 0.00 0.00 3.27
4142 4981 8.408601 ACATATTTGCACCTTCATATTCTGAAC 58.591 33.333 0.00 0.00 38.97 3.18
4144 4983 4.574674 TGCACCTTCATATTCTGAACCT 57.425 40.909 0.00 0.00 38.97 3.50
4146 4985 6.061022 TGCACCTTCATATTCTGAACCTTA 57.939 37.500 0.00 0.00 38.97 2.69
4147 4986 6.662755 TGCACCTTCATATTCTGAACCTTAT 58.337 36.000 0.00 0.00 38.97 1.73
4149 4988 7.615365 TGCACCTTCATATTCTGAACCTTATTT 59.385 33.333 0.00 0.00 38.97 1.40
4150 4989 7.917505 GCACCTTCATATTCTGAACCTTATTTG 59.082 37.037 0.00 0.00 38.97 2.32
4151 4990 7.917505 CACCTTCATATTCTGAACCTTATTTGC 59.082 37.037 0.00 0.00 38.97 3.68
4153 4992 7.917505 CCTTCATATTCTGAACCTTATTTGCAC 59.082 37.037 0.00 0.00 38.97 4.57
4155 4994 8.347004 TCATATTCTGAACCTTATTTGCACAA 57.653 30.769 0.00 0.00 0.00 3.33
4156 4995 8.461222 TCATATTCTGAACCTTATTTGCACAAG 58.539 33.333 0.00 0.00 0.00 3.16
4157 4996 6.655078 ATTCTGAACCTTATTTGCACAAGT 57.345 33.333 0.00 0.00 0.00 3.16
4158 4997 7.759489 ATTCTGAACCTTATTTGCACAAGTA 57.241 32.000 0.00 0.00 0.00 2.24
4160 4999 6.296026 TCTGAACCTTATTTGCACAAGTAGT 58.704 36.000 0.00 0.00 0.00 2.73
4161 5000 6.426937 TCTGAACCTTATTTGCACAAGTAGTC 59.573 38.462 0.00 0.00 0.00 2.59
4162 5001 6.296026 TGAACCTTATTTGCACAAGTAGTCT 58.704 36.000 0.00 0.00 0.00 3.24
4163 5002 6.770785 TGAACCTTATTTGCACAAGTAGTCTT 59.229 34.615 0.00 0.00 0.00 3.01
4164 5003 7.934665 TGAACCTTATTTGCACAAGTAGTCTTA 59.065 33.333 0.00 0.00 32.07 2.10
4165 5004 7.907214 ACCTTATTTGCACAAGTAGTCTTAG 57.093 36.000 0.00 0.00 32.07 2.18
4168 5007 9.167311 CCTTATTTGCACAAGTAGTCTTAGAAT 57.833 33.333 0.00 0.00 32.07 2.40
4176 5098 9.974750 GCACAAGTAGTCTTAGAATAATGAAAC 57.025 33.333 9.61 0.00 32.07 2.78
4186 5108 8.686334 TCTTAGAATAATGAAACCAAATGGCTC 58.314 33.333 0.00 0.00 39.32 4.70
4211 5133 4.984295 TGAGTTCAGGACAATGAATGGAA 58.016 39.130 0.00 0.00 41.05 3.53
4212 5134 5.005740 TGAGTTCAGGACAATGAATGGAAG 58.994 41.667 0.00 0.00 41.05 3.46
4213 5135 5.221904 TGAGTTCAGGACAATGAATGGAAGA 60.222 40.000 0.00 0.00 41.05 2.87
4220 5142 6.825213 CAGGACAATGAATGGAAGATACAAGA 59.175 38.462 0.00 0.00 0.00 3.02
4221 5143 7.337689 CAGGACAATGAATGGAAGATACAAGAA 59.662 37.037 0.00 0.00 0.00 2.52
4242 5171 4.261578 ACAATGAAACCAAATGGCTGAG 57.738 40.909 0.00 0.00 39.32 3.35
4268 5199 6.596888 TGAGTTCAGGACAATGAATTGAGATC 59.403 38.462 9.94 0.00 41.05 2.75
4269 5200 5.884792 AGTTCAGGACAATGAATTGAGATCC 59.115 40.000 9.94 6.55 41.05 3.36
4271 5202 6.070951 TCAGGACAATGAATTGAGATCCTT 57.929 37.500 9.94 0.00 38.18 3.36
4272 5203 6.487828 TCAGGACAATGAATTGAGATCCTTT 58.512 36.000 9.94 0.00 38.18 3.11
4273 5204 6.376299 TCAGGACAATGAATTGAGATCCTTTG 59.624 38.462 9.94 3.09 38.18 2.77
4274 5205 6.376299 CAGGACAATGAATTGAGATCCTTTGA 59.624 38.462 9.94 0.00 38.18 2.69
4277 5208 7.154435 ACAATGAATTGAGATCCTTTGACAG 57.846 36.000 9.94 0.00 40.14 3.51
4278 5209 5.831702 ATGAATTGAGATCCTTTGACAGC 57.168 39.130 0.00 0.00 0.00 4.40
4279 5210 4.914983 TGAATTGAGATCCTTTGACAGCT 58.085 39.130 0.00 0.00 0.00 4.24
4280 5211 4.940046 TGAATTGAGATCCTTTGACAGCTC 59.060 41.667 0.00 0.00 0.00 4.09
4281 5212 4.840716 ATTGAGATCCTTTGACAGCTCT 57.159 40.909 0.00 0.00 0.00 4.09
4282 5213 3.606595 TGAGATCCTTTGACAGCTCTG 57.393 47.619 0.00 0.00 0.00 3.35
4283 5214 2.278854 GAGATCCTTTGACAGCTCTGC 58.721 52.381 0.00 0.00 0.00 4.26
4284 5215 1.065564 AGATCCTTTGACAGCTCTGCC 60.066 52.381 0.00 0.00 0.00 4.85
4287 5218 0.035881 CCTTTGACAGCTCTGCCAGA 59.964 55.000 0.00 0.00 0.00 3.86
4288 5219 1.544093 CCTTTGACAGCTCTGCCAGAA 60.544 52.381 0.00 0.00 0.00 3.02
4290 5221 1.597742 TTGACAGCTCTGCCAGAAAC 58.402 50.000 0.00 0.00 0.00 2.78
4291 5222 0.250467 TGACAGCTCTGCCAGAAACC 60.250 55.000 0.00 0.00 0.00 3.27
4292 5223 1.294659 GACAGCTCTGCCAGAAACCG 61.295 60.000 0.00 0.00 0.00 4.44
4293 5224 1.302033 CAGCTCTGCCAGAAACCGT 60.302 57.895 0.00 0.00 0.00 4.83
4295 5226 0.247736 AGCTCTGCCAGAAACCGTAG 59.752 55.000 0.00 0.00 0.00 3.51
4296 5227 1.362406 GCTCTGCCAGAAACCGTAGC 61.362 60.000 0.00 0.00 0.00 3.58
4298 5229 0.246635 TCTGCCAGAAACCGTAGCTC 59.753 55.000 0.00 0.00 0.00 4.09
4299 5230 0.247736 CTGCCAGAAACCGTAGCTCT 59.752 55.000 0.00 0.00 0.00 4.09
4301 5232 0.460459 GCCAGAAACCGTAGCTCTCC 60.460 60.000 0.00 0.00 0.00 3.71
4302 5233 0.175989 CCAGAAACCGTAGCTCTCCC 59.824 60.000 0.00 0.00 0.00 4.30
4305 5236 1.757699 AGAAACCGTAGCTCTCCCATC 59.242 52.381 0.00 0.00 0.00 3.51
4306 5237 1.480954 GAAACCGTAGCTCTCCCATCA 59.519 52.381 0.00 0.00 0.00 3.07
4307 5238 1.568504 AACCGTAGCTCTCCCATCAA 58.431 50.000 0.00 0.00 0.00 2.57
4308 5239 1.568504 ACCGTAGCTCTCCCATCAAA 58.431 50.000 0.00 0.00 0.00 2.69
4309 5240 1.906574 ACCGTAGCTCTCCCATCAAAA 59.093 47.619 0.00 0.00 0.00 2.44
4310 5241 2.280628 CCGTAGCTCTCCCATCAAAAC 58.719 52.381 0.00 0.00 0.00 2.43
4311 5242 2.093447 CCGTAGCTCTCCCATCAAAACT 60.093 50.000 0.00 0.00 0.00 2.66
4313 5244 4.113354 CGTAGCTCTCCCATCAAAACTAC 58.887 47.826 0.00 0.00 0.00 2.73
4314 5245 4.381612 CGTAGCTCTCCCATCAAAACTACA 60.382 45.833 0.00 0.00 31.34 2.74
4315 5246 3.944087 AGCTCTCCCATCAAAACTACAC 58.056 45.455 0.00 0.00 0.00 2.90
4317 5248 3.935828 GCTCTCCCATCAAAACTACACTC 59.064 47.826 0.00 0.00 0.00 3.51
4318 5249 4.563580 GCTCTCCCATCAAAACTACACTCA 60.564 45.833 0.00 0.00 0.00 3.41
4319 5250 5.152623 TCTCCCATCAAAACTACACTCAG 57.847 43.478 0.00 0.00 0.00 3.35
4320 5251 4.838423 TCTCCCATCAAAACTACACTCAGA 59.162 41.667 0.00 0.00 0.00 3.27
4321 5252 4.894784 TCCCATCAAAACTACACTCAGAC 58.105 43.478 0.00 0.00 0.00 3.51
4324 5255 5.049405 CCCATCAAAACTACACTCAGACAAC 60.049 44.000 0.00 0.00 0.00 3.32
4326 5257 6.205464 CCATCAAAACTACACTCAGACAACAT 59.795 38.462 0.00 0.00 0.00 2.71
4327 5258 7.255242 CCATCAAAACTACACTCAGACAACATT 60.255 37.037 0.00 0.00 0.00 2.71
4328 5259 7.624360 TCAAAACTACACTCAGACAACATTT 57.376 32.000 0.00 0.00 0.00 2.32
4329 5260 7.471721 TCAAAACTACACTCAGACAACATTTG 58.528 34.615 0.00 0.00 0.00 2.32
4375 5320 3.916172 CAGTTTTGGAACATTGCTGATCG 59.084 43.478 0.00 0.00 39.30 3.69
4390 5335 1.202348 TGATCGAGTTCAGCACATCGT 59.798 47.619 0.00 0.00 36.58 3.73
4394 5339 1.667177 CGAGTTCAGCACATCGTGACT 60.667 52.381 0.00 0.00 35.23 3.41
4432 5377 8.996271 TGCATCAATGAACTGAGATTATCATAC 58.004 33.333 0.00 0.00 37.28 2.39
4446 5391 5.723672 TTATCATACGAAGATCCACCCTC 57.276 43.478 0.00 0.00 0.00 4.30
4450 5395 1.938585 ACGAAGATCCACCCTCTTCA 58.061 50.000 12.14 0.00 45.81 3.02
4509 5454 2.613223 GCCTCCTTATCGCCTTGGTATC 60.613 54.545 0.00 0.00 0.00 2.24
4511 5456 1.616865 TCCTTATCGCCTTGGTATCGG 59.383 52.381 0.00 0.00 0.00 4.18
4512 5457 1.616865 CCTTATCGCCTTGGTATCGGA 59.383 52.381 0.00 0.00 0.00 4.55
4519 5464 1.412710 GCCTTGGTATCGGACTCATCA 59.587 52.381 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.421268 ACATTGCAGGAACTCTGGACA 59.579 47.619 0.00 0.00 43.62 4.02
44 45 6.038356 GGAAATTTCATGATGCTTCGACATT 58.962 36.000 19.49 0.00 0.00 2.71
45 46 5.125900 TGGAAATTTCATGATGCTTCGACAT 59.874 36.000 19.49 0.00 0.00 3.06
50 51 6.392354 TCAGTTGGAAATTTCATGATGCTTC 58.608 36.000 19.49 0.00 0.00 3.86
55 56 7.707624 TTAGCTCAGTTGGAAATTTCATGAT 57.292 32.000 19.49 6.83 0.00 2.45
58 59 7.154656 GGTTTTAGCTCAGTTGGAAATTTCAT 58.845 34.615 19.49 0.03 0.00 2.57
67 68 5.473504 ACTTATGTGGTTTTAGCTCAGTTGG 59.526 40.000 0.00 0.00 0.00 3.77
75 76 9.615295 TTCGAAAATAACTTATGTGGTTTTAGC 57.385 29.630 0.00 0.00 0.00 3.09
80 81 6.427547 TCCGTTCGAAAATAACTTATGTGGTT 59.572 34.615 0.00 0.00 0.00 3.67
85 86 6.657836 ACCTCCGTTCGAAAATAACTTATG 57.342 37.500 0.00 0.00 0.00 1.90
86 87 8.953368 ATAACCTCCGTTCGAAAATAACTTAT 57.047 30.769 0.00 0.00 33.17 1.73
88 89 8.953368 ATATAACCTCCGTTCGAAAATAACTT 57.047 30.769 0.00 0.00 33.17 2.66
90 91 7.585210 GCAATATAACCTCCGTTCGAAAATAAC 59.415 37.037 0.00 0.00 33.17 1.89
103 104 5.774690 TGGGATCATTTGCAATATAACCTCC 59.225 40.000 0.00 0.89 0.00 4.30
104 105 6.899393 TGGGATCATTTGCAATATAACCTC 57.101 37.500 0.00 0.00 0.00 3.85
107 108 6.752168 AGCTTGGGATCATTTGCAATATAAC 58.248 36.000 0.00 0.00 0.00 1.89
114 115 1.097232 CGAGCTTGGGATCATTTGCA 58.903 50.000 0.00 0.00 0.00 4.08
118 143 2.741878 CGTTACCGAGCTTGGGATCATT 60.742 50.000 24.40 4.33 35.63 2.57
123 148 2.263540 GCGTTACCGAGCTTGGGA 59.736 61.111 24.40 13.84 35.63 4.37
133 158 0.319297 CTATACAGGGCGGCGTTACC 60.319 60.000 9.37 9.11 0.00 2.85
140 165 1.139058 AGCAGTTTCTATACAGGGCGG 59.861 52.381 0.00 0.00 0.00 6.13
188 213 9.632638 AATGTGAGGCTCTATACATTTTTACAT 57.367 29.630 20.07 12.35 39.88 2.29
189 214 9.461312 AAATGTGAGGCTCTATACATTTTTACA 57.539 29.630 26.31 15.14 46.00 2.41
217 246 7.963465 CGAATTCTTTAACTCTTTCCTAAAGCC 59.037 37.037 3.52 0.00 38.39 4.35
242 271 4.389664 TTCTGAAAGCGAGAAAATGTCG 57.610 40.909 0.00 0.00 40.50 4.35
260 289 6.359480 ACGTGAAATTCTTCGACTTTTTCT 57.641 33.333 14.91 0.00 33.94 2.52
265 294 5.195379 CGAAAACGTGAAATTCTTCGACTT 58.805 37.500 14.91 8.92 38.27 3.01
269 298 3.284914 TGCGAAAACGTGAAATTCTTCG 58.715 40.909 9.12 9.12 38.85 3.79
270 299 4.967575 TCTTGCGAAAACGTGAAATTCTTC 59.032 37.500 0.00 0.00 0.00 2.87
281 310 2.286833 TCAACCTCTTCTTGCGAAAACG 59.713 45.455 0.00 0.00 0.00 3.60
282 311 3.963383 TCAACCTCTTCTTGCGAAAAC 57.037 42.857 0.00 0.00 0.00 2.43
289 318 8.652810 AAACATTCAATTTCAACCTCTTCTTG 57.347 30.769 0.00 0.00 0.00 3.02
299 328 5.130145 ACCAGGTGGAAACATTCAATTTCAA 59.870 36.000 2.10 0.00 46.14 2.69
300 329 4.653341 ACCAGGTGGAAACATTCAATTTCA 59.347 37.500 2.10 0.00 46.14 2.69
301 330 4.990426 CACCAGGTGGAAACATTCAATTTC 59.010 41.667 12.40 0.00 46.14 2.17
302 331 4.743348 GCACCAGGTGGAAACATTCAATTT 60.743 41.667 21.77 0.00 46.14 1.82
303 332 3.244181 GCACCAGGTGGAAACATTCAATT 60.244 43.478 21.77 0.00 46.14 2.32
304 333 2.299867 GCACCAGGTGGAAACATTCAAT 59.700 45.455 21.77 0.00 46.14 2.57
378 410 5.103687 GGCGTGTGGTTTTCTTTCTTTTTA 58.896 37.500 0.00 0.00 0.00 1.52
379 411 3.930229 GGCGTGTGGTTTTCTTTCTTTTT 59.070 39.130 0.00 0.00 0.00 1.94
380 412 3.056465 TGGCGTGTGGTTTTCTTTCTTTT 60.056 39.130 0.00 0.00 0.00 2.27
400 436 5.005779 CGACGGATTTACAAGATCTCTTTGG 59.994 44.000 0.00 0.00 33.11 3.28
415 451 5.953183 TGTTGTAGTATGTACGACGGATTT 58.047 37.500 0.00 0.00 35.03 2.17
433 469 7.920160 ATTGGAAAGATTTTTGTGTTGTTGT 57.080 28.000 0.00 0.00 0.00 3.32
436 472 9.097257 CTGTTATTGGAAAGATTTTTGTGTTGT 57.903 29.630 0.00 0.00 0.00 3.32
437 473 9.097257 ACTGTTATTGGAAAGATTTTTGTGTTG 57.903 29.630 0.00 0.00 0.00 3.33
439 475 7.710475 CCACTGTTATTGGAAAGATTTTTGTGT 59.290 33.333 0.00 0.00 36.02 3.72
440 476 7.307337 GCCACTGTTATTGGAAAGATTTTTGTG 60.307 37.037 0.00 0.00 36.02 3.33
441 477 6.705825 GCCACTGTTATTGGAAAGATTTTTGT 59.294 34.615 0.00 0.00 36.02 2.83
442 478 6.147656 GGCCACTGTTATTGGAAAGATTTTTG 59.852 38.462 0.00 0.00 36.02 2.44
443 479 6.183361 TGGCCACTGTTATTGGAAAGATTTTT 60.183 34.615 0.00 0.00 36.02 1.94
451 487 6.865834 AATTAATGGCCACTGTTATTGGAA 57.134 33.333 8.16 0.00 36.02 3.53
535 571 4.021925 GGCTGGGTTCCGAGCTGT 62.022 66.667 21.34 0.00 35.42 4.40
715 756 1.004511 AGATATAGGACGAGGACGGGG 59.995 57.143 0.00 0.00 44.46 5.73
963 1024 1.452108 CTGGCCAAAGATCCCGGAC 60.452 63.158 7.01 0.00 0.00 4.79
1016 1077 3.036084 CGGCAGCGACGTTGTTCT 61.036 61.111 13.36 0.00 0.00 3.01
1017 1078 4.719616 GCGGCAGCGACGTTGTTC 62.720 66.667 13.36 5.50 35.91 3.18
1083 1147 5.183140 AGGAAGAAGAAGAAGAAGACGAGAG 59.817 44.000 0.00 0.00 0.00 3.20
1088 1152 5.049060 GCCAAAGGAAGAAGAAGAAGAAGAC 60.049 44.000 0.00 0.00 0.00 3.01
1133 1201 0.955919 GAACCAGGAACCAGCGAAGG 60.956 60.000 0.00 0.00 0.00 3.46
1192 1260 3.856093 CCCCCAAGAACCCCATCT 58.144 61.111 0.00 0.00 0.00 2.90
1250 1319 2.153401 CACCCCAACCAGACAGGGA 61.153 63.158 0.00 0.00 45.80 4.20
1305 1383 0.944386 TCGGAAGCTTGAAGCACAAC 59.056 50.000 20.45 7.11 45.56 3.32
1351 1430 5.886960 AAAACGAGGATTGGAATCTTGAG 57.113 39.130 0.00 0.00 35.73 3.02
1443 1522 3.549794 GGAGGAGGTGGATCAAATCAAG 58.450 50.000 0.00 0.00 0.00 3.02
1464 1543 1.746220 AGAAGAAGTCAGATCCGTCGG 59.254 52.381 4.39 4.39 0.00 4.79
1495 1574 0.250901 ACCACCACCTAAAGCTGCAG 60.251 55.000 10.11 10.11 0.00 4.41
1574 1656 4.323477 CGGCGGGTGTTCTTGGGA 62.323 66.667 0.00 0.00 0.00 4.37
1747 1833 3.015934 TCTAAGAACGCAACGTAAGCA 57.984 42.857 12.59 0.00 39.99 3.91
1845 1931 0.253327 GTACCTTGGCCTTCTCCTGG 59.747 60.000 3.32 0.00 0.00 4.45
1905 1994 1.103803 TCAGCACCGAGACCAGATAC 58.896 55.000 0.00 0.00 0.00 2.24
2191 2283 0.107945 GGCTCCTTGCACAGGTCTAG 60.108 60.000 12.71 6.38 44.37 2.43
2209 2301 6.167685 GGATCAGAATCAGAATCAGATCAGG 58.832 44.000 18.02 0.00 39.96 3.86
2366 2459 5.836024 AGGGAGTACATGTTTTTACCTCA 57.164 39.130 2.30 0.00 0.00 3.86
2386 2479 6.261381 CACTCTAGTACTTCTACTGCCTAAGG 59.739 46.154 0.00 0.00 34.79 2.69
2389 2482 6.114089 CACACTCTAGTACTTCTACTGCCTA 58.886 44.000 0.00 0.00 34.79 3.93
2398 2491 5.270812 GCTTTTGCACACTCTAGTACTTC 57.729 43.478 0.00 0.00 46.58 3.01
2504 2615 1.831106 AGTCCATGTAATCACTGGCGA 59.169 47.619 0.00 0.00 0.00 5.54
2511 2622 3.452264 CCACCTGAGAGTCCATGTAATCA 59.548 47.826 0.00 0.00 0.00 2.57
2526 2637 1.191489 TGGCGTTGATCTCCACCTGA 61.191 55.000 0.00 0.00 0.00 3.86
2583 2694 0.679505 TCAGGTCGAACTTCTGGTGG 59.320 55.000 0.00 0.00 0.00 4.61
2739 2850 2.022527 AGGGATTCTTCAGCCTACCTCT 60.023 50.000 0.00 0.00 0.00 3.69
2746 2857 0.545646 AGCAGAGGGATTCTTCAGCC 59.454 55.000 0.00 0.00 32.41 4.85
2748 2859 3.198635 TGGTAAGCAGAGGGATTCTTCAG 59.801 47.826 0.00 0.00 32.41 3.02
2749 2860 3.181329 TGGTAAGCAGAGGGATTCTTCA 58.819 45.455 0.00 0.00 32.41 3.02
2750 2861 3.452627 TCTGGTAAGCAGAGGGATTCTTC 59.547 47.826 0.00 0.00 32.41 2.87
2767 2887 5.430886 TCGATGAATGAATGAACATCTGGT 58.569 37.500 0.00 0.00 37.54 4.00
2768 2888 5.526479 ACTCGATGAATGAATGAACATCTGG 59.474 40.000 0.00 0.00 37.54 3.86
2770 2890 5.757320 GGACTCGATGAATGAATGAACATCT 59.243 40.000 0.00 0.00 37.54 2.90
2771 2891 5.525012 TGGACTCGATGAATGAATGAACATC 59.475 40.000 0.00 0.00 36.70 3.06
2772 2892 5.295292 GTGGACTCGATGAATGAATGAACAT 59.705 40.000 0.00 0.00 0.00 2.71
2773 2893 4.631377 GTGGACTCGATGAATGAATGAACA 59.369 41.667 0.00 0.00 0.00 3.18
2778 2911 3.526931 ACGTGGACTCGATGAATGAAT 57.473 42.857 0.48 0.00 34.70 2.57
3023 3190 6.233434 TCTGAAGAATTTGTATGCTGTGTCT 58.767 36.000 0.00 0.00 0.00 3.41
3024 3191 6.486253 TCTGAAGAATTTGTATGCTGTGTC 57.514 37.500 0.00 0.00 0.00 3.67
3025 3192 6.656270 TGATCTGAAGAATTTGTATGCTGTGT 59.344 34.615 0.00 0.00 0.00 3.72
3026 3193 7.080353 TGATCTGAAGAATTTGTATGCTGTG 57.920 36.000 0.00 0.00 0.00 3.66
3034 3201 4.573900 ACTCGCTGATCTGAAGAATTTGT 58.426 39.130 3.42 0.00 0.00 2.83
3079 3277 3.095332 CACACATCCAGGAGAAGAGAGA 58.905 50.000 0.00 0.00 0.00 3.10
3150 3352 2.584608 GACTGCACCAGCCCGTAT 59.415 61.111 0.00 0.00 41.13 3.06
3295 4044 2.549064 TTCAGTAGTGTGCACATGCT 57.451 45.000 24.69 18.46 42.66 3.79
3296 4045 2.096496 GGATTCAGTAGTGTGCACATGC 59.904 50.000 24.69 15.60 42.50 4.06
3297 4046 2.679837 GGGATTCAGTAGTGTGCACATG 59.320 50.000 24.69 17.12 0.00 3.21
3298 4047 2.573462 AGGGATTCAGTAGTGTGCACAT 59.427 45.455 24.69 14.26 0.00 3.21
3299 4048 1.977854 AGGGATTCAGTAGTGTGCACA 59.022 47.619 17.42 17.42 0.00 4.57
3300 4049 2.770164 AGGGATTCAGTAGTGTGCAC 57.230 50.000 10.75 10.75 0.00 4.57
3330 4079 1.537202 GCGTGCCCCTGAATGATATTC 59.463 52.381 0.00 0.00 0.00 1.75
3331 4080 1.133823 TGCGTGCCCCTGAATGATATT 60.134 47.619 0.00 0.00 0.00 1.28
3334 4094 1.750399 GTGCGTGCCCCTGAATGAT 60.750 57.895 0.00 0.00 0.00 2.45
3353 4113 3.947196 ACACAAAAGCATTGTCTCTGTCA 59.053 39.130 5.05 0.00 0.00 3.58
3354 4114 4.035558 TCACACAAAAGCATTGTCTCTGTC 59.964 41.667 5.05 0.00 0.00 3.51
3355 4115 3.947196 TCACACAAAAGCATTGTCTCTGT 59.053 39.130 5.05 0.00 0.00 3.41
3356 4116 4.556942 TCACACAAAAGCATTGTCTCTG 57.443 40.909 5.05 2.67 0.00 3.35
3357 4117 4.823442 TCATCACACAAAAGCATTGTCTCT 59.177 37.500 5.05 0.00 0.00 3.10
3358 4118 5.112220 TCATCACACAAAAGCATTGTCTC 57.888 39.130 5.05 0.00 0.00 3.36
3359 4119 5.717078 ATCATCACACAAAAGCATTGTCT 57.283 34.783 5.05 0.00 0.00 3.41
3360 4120 5.119588 CCAATCATCACACAAAAGCATTGTC 59.880 40.000 5.05 0.00 0.00 3.18
3361 4121 4.992319 CCAATCATCACACAAAAGCATTGT 59.008 37.500 2.38 2.38 0.00 2.71
3362 4122 4.992319 ACCAATCATCACACAAAAGCATTG 59.008 37.500 1.14 1.14 0.00 2.82
3363 4123 5.217978 ACCAATCATCACACAAAAGCATT 57.782 34.783 0.00 0.00 0.00 3.56
3364 4124 4.877378 ACCAATCATCACACAAAAGCAT 57.123 36.364 0.00 0.00 0.00 3.79
3515 4288 1.214589 GGGCAGCTCATTTGCACAG 59.785 57.895 0.00 0.00 44.32 3.66
3536 4309 2.418280 CCAAACCCAAAGCAACAAACAC 59.582 45.455 0.00 0.00 0.00 3.32
3607 4381 9.052759 ACTCTTCTAAAAGCAAGAAACGAATAA 57.947 29.630 0.00 0.00 32.77 1.40
3635 4409 4.226761 GTTATTCAAACCCTTCTTGCACG 58.773 43.478 0.00 0.00 0.00 5.34
3636 4410 5.195001 TGTTATTCAAACCCTTCTTGCAC 57.805 39.130 0.00 0.00 0.00 4.57
3637 4411 4.892934 ACTGTTATTCAAACCCTTCTTGCA 59.107 37.500 0.00 0.00 0.00 4.08
3638 4412 5.453567 ACTGTTATTCAAACCCTTCTTGC 57.546 39.130 0.00 0.00 0.00 4.01
3643 4417 6.070481 ACCAAACAACTGTTATTCAAACCCTT 60.070 34.615 0.00 0.00 37.25 3.95
3652 4426 5.729510 ACTTGCAACCAAACAACTGTTATT 58.270 33.333 0.00 0.00 37.25 1.40
3653 4427 5.105554 TGACTTGCAACCAAACAACTGTTAT 60.106 36.000 0.00 0.00 37.25 1.89
3654 4428 4.218635 TGACTTGCAACCAAACAACTGTTA 59.781 37.500 0.00 0.00 37.25 2.41
3656 4430 2.560542 TGACTTGCAACCAAACAACTGT 59.439 40.909 0.00 0.00 0.00 3.55
3657 4431 3.181397 CTGACTTGCAACCAAACAACTG 58.819 45.455 0.00 0.00 0.00 3.16
3658 4432 2.166254 CCTGACTTGCAACCAAACAACT 59.834 45.455 0.00 0.00 0.00 3.16
3669 4446 5.294734 TCAGATAATATGCCTGACTTGCA 57.705 39.130 0.00 0.00 43.97 4.08
3718 4495 6.183360 ACCAAGGTGTATTTTTCTCACACAAG 60.183 38.462 6.44 0.00 43.44 3.16
3727 4504 5.784578 ACCAAGACCAAGGTGTATTTTTC 57.215 39.130 0.00 0.00 36.60 2.29
3762 4539 5.188327 CTGTCGTAGATAGCATCCAGAAA 57.812 43.478 0.00 0.00 39.27 2.52
3845 4622 6.398234 ACAGATAGATATCTCACACACCAC 57.602 41.667 8.95 0.00 40.91 4.16
3864 4642 7.815840 TGTGGTTCAGATTTTGAATAACAGA 57.184 32.000 0.00 0.00 46.85 3.41
3887 4665 7.085746 TGAAATTATGATGAACACTGCAACTG 58.914 34.615 0.00 0.00 0.00 3.16
3889 4667 7.872163 TTGAAATTATGATGAACACTGCAAC 57.128 32.000 0.00 0.00 0.00 4.17
3890 4668 8.883954 TTTTGAAATTATGATGAACACTGCAA 57.116 26.923 0.00 0.00 0.00 4.08
3892 4670 9.362539 AGATTTTGAAATTATGATGAACACTGC 57.637 29.630 0.00 0.00 0.00 4.40
3957 4780 2.987547 AGCAATTGCAGTGCGGCT 60.988 55.556 30.89 13.48 46.86 5.52
3972 4802 2.917343 GCAGAAACGCCTTTTTATCAGC 59.083 45.455 0.00 0.00 0.00 4.26
3973 4803 3.914364 GTGCAGAAACGCCTTTTTATCAG 59.086 43.478 0.00 0.00 0.00 2.90
3974 4804 3.316588 TGTGCAGAAACGCCTTTTTATCA 59.683 39.130 0.00 0.00 0.00 2.15
3975 4805 3.896122 TGTGCAGAAACGCCTTTTTATC 58.104 40.909 0.00 0.00 0.00 1.75
3977 4807 4.314740 AATGTGCAGAAACGCCTTTTTA 57.685 36.364 0.00 0.00 0.00 1.52
3979 4809 2.888834 AATGTGCAGAAACGCCTTTT 57.111 40.000 0.00 0.00 0.00 2.27
3980 4810 4.519540 ATTAATGTGCAGAAACGCCTTT 57.480 36.364 0.00 0.00 0.00 3.11
3981 4811 4.519540 AATTAATGTGCAGAAACGCCTT 57.480 36.364 0.00 0.00 0.00 4.35
3982 4812 4.519540 AAATTAATGTGCAGAAACGCCT 57.480 36.364 0.00 0.00 0.00 5.52
3983 4813 5.405269 AGAAAAATTAATGTGCAGAAACGCC 59.595 36.000 0.00 0.00 0.00 5.68
3984 4814 6.452244 AGAAAAATTAATGTGCAGAAACGC 57.548 33.333 0.00 0.00 0.00 4.84
3985 4815 8.285776 AGAAGAAAAATTAATGTGCAGAAACG 57.714 30.769 0.00 0.00 0.00 3.60
3986 4816 9.248291 TGAGAAGAAAAATTAATGTGCAGAAAC 57.752 29.630 0.00 0.00 0.00 2.78
3987 4817 9.248291 GTGAGAAGAAAAATTAATGTGCAGAAA 57.752 29.630 0.00 0.00 0.00 2.52
3988 4818 8.412456 TGTGAGAAGAAAAATTAATGTGCAGAA 58.588 29.630 0.00 0.00 0.00 3.02
4061 4892 5.046663 AGGAAATTCAGAAGGACAGAGAGTC 60.047 44.000 0.00 0.00 46.83 3.36
4062 4893 4.843516 AGGAAATTCAGAAGGACAGAGAGT 59.156 41.667 0.00 0.00 0.00 3.24
4063 4894 5.418676 GAGGAAATTCAGAAGGACAGAGAG 58.581 45.833 0.00 0.00 0.00 3.20
4064 4895 4.223923 GGAGGAAATTCAGAAGGACAGAGA 59.776 45.833 0.00 0.00 0.00 3.10
4065 4896 4.224818 AGGAGGAAATTCAGAAGGACAGAG 59.775 45.833 0.00 0.00 0.00 3.35
4066 4897 4.171234 AGGAGGAAATTCAGAAGGACAGA 58.829 43.478 0.00 0.00 0.00 3.41
4067 4898 4.566426 AGGAGGAAATTCAGAAGGACAG 57.434 45.455 0.00 0.00 0.00 3.51
4068 4899 6.642733 ATAAGGAGGAAATTCAGAAGGACA 57.357 37.500 0.00 0.00 0.00 4.02
4080 4911 6.780522 AGCTGGTGTTAAAAATAAGGAGGAAA 59.219 34.615 0.00 0.00 0.00 3.13
4099 4930 9.150348 GCAAATATGTGTTAAAAATAAGCTGGT 57.850 29.630 0.00 0.00 0.00 4.00
4101 4932 9.956797 GTGCAAATATGTGTTAAAAATAAGCTG 57.043 29.630 0.00 0.00 0.00 4.24
4102 4933 9.150348 GGTGCAAATATGTGTTAAAAATAAGCT 57.850 29.630 0.00 0.00 0.00 3.74
4103 4934 9.150348 AGGTGCAAATATGTGTTAAAAATAAGC 57.850 29.630 0.00 0.00 0.00 3.09
4113 4952 8.192774 CAGAATATGAAGGTGCAAATATGTGTT 58.807 33.333 0.00 0.00 0.00 3.32
4115 4954 7.933396 TCAGAATATGAAGGTGCAAATATGTG 58.067 34.615 0.00 0.00 34.02 3.21
4116 4955 8.523915 TTCAGAATATGAAGGTGCAAATATGT 57.476 30.769 0.00 0.00 43.09 2.29
4135 4974 6.770785 ACTACTTGTGCAAATAAGGTTCAGAA 59.229 34.615 10.29 0.00 0.00 3.02
4137 4976 6.428159 AGACTACTTGTGCAAATAAGGTTCAG 59.572 38.462 10.29 5.50 0.00 3.02
4140 4979 8.154856 TCTAAGACTACTTGTGCAAATAAGGTT 58.845 33.333 10.29 0.00 37.53 3.50
4142 4981 8.547967 TTCTAAGACTACTTGTGCAAATAAGG 57.452 34.615 10.29 0.00 37.53 2.69
4147 4986 9.719355 TCATTATTCTAAGACTACTTGTGCAAA 57.281 29.630 0.00 0.00 37.53 3.68
4149 4988 9.719355 TTTCATTATTCTAAGACTACTTGTGCA 57.281 29.630 0.00 0.00 37.53 4.57
4150 4989 9.974750 GTTTCATTATTCTAAGACTACTTGTGC 57.025 33.333 0.00 0.00 37.53 4.57
4158 4997 8.470002 GCCATTTGGTTTCATTATTCTAAGACT 58.530 33.333 0.00 0.00 37.57 3.24
4160 4999 8.593945 AGCCATTTGGTTTCATTATTCTAAGA 57.406 30.769 0.00 0.00 37.57 2.10
4161 5000 8.469200 TGAGCCATTTGGTTTCATTATTCTAAG 58.531 33.333 0.00 0.00 37.57 2.18
4162 5001 8.359875 TGAGCCATTTGGTTTCATTATTCTAA 57.640 30.769 0.00 0.00 37.57 2.10
4163 5002 7.953005 TGAGCCATTTGGTTTCATTATTCTA 57.047 32.000 0.00 0.00 37.57 2.10
4164 5003 6.855763 TGAGCCATTTGGTTTCATTATTCT 57.144 33.333 0.00 0.00 37.57 2.40
4165 5004 7.765360 TCAATGAGCCATTTGGTTTCATTATTC 59.235 33.333 20.85 0.00 43.28 1.75
4168 5007 6.211184 ACTCAATGAGCCATTTGGTTTCATTA 59.789 34.615 20.85 13.42 43.28 1.90
4176 5098 3.119245 CCTGAACTCAATGAGCCATTTGG 60.119 47.826 10.62 3.39 31.05 3.28
4186 5108 5.416639 TCCATTCATTGTCCTGAACTCAATG 59.583 40.000 9.81 9.81 45.31 2.82
4208 5130 7.214467 TGGTTTCATTGTTCTTGTATCTTCC 57.786 36.000 0.00 0.00 0.00 3.46
4211 5133 8.090214 CCATTTGGTTTCATTGTTCTTGTATCT 58.910 33.333 0.00 0.00 0.00 1.98
4212 5134 7.148590 GCCATTTGGTTTCATTGTTCTTGTATC 60.149 37.037 0.00 0.00 37.57 2.24
4213 5135 6.650390 GCCATTTGGTTTCATTGTTCTTGTAT 59.350 34.615 0.00 0.00 37.57 2.29
4220 5142 4.101430 ACTCAGCCATTTGGTTTCATTGTT 59.899 37.500 0.00 0.00 37.57 2.83
4221 5143 3.642848 ACTCAGCCATTTGGTTTCATTGT 59.357 39.130 0.00 0.00 37.57 2.71
4242 5171 5.702670 TCTCAATTCATTGTCCTGAACTCAC 59.297 40.000 0.00 0.00 37.93 3.51
4268 5199 0.035881 TCTGGCAGAGCTGTCAAAGG 59.964 55.000 14.43 0.00 45.38 3.11
4269 5200 1.888215 TTCTGGCAGAGCTGTCAAAG 58.112 50.000 17.91 0.00 45.38 2.77
4271 5202 1.597742 GTTTCTGGCAGAGCTGTCAA 58.402 50.000 17.91 5.09 45.38 3.18
4272 5203 0.250467 GGTTTCTGGCAGAGCTGTCA 60.250 55.000 17.91 4.56 43.73 3.58
4273 5204 1.294659 CGGTTTCTGGCAGAGCTGTC 61.295 60.000 17.91 7.47 35.37 3.51
4274 5205 1.302033 CGGTTTCTGGCAGAGCTGT 60.302 57.895 17.91 0.00 0.00 4.40
4277 5208 1.362406 GCTACGGTTTCTGGCAGAGC 61.362 60.000 17.91 11.84 0.00 4.09
4278 5209 0.247736 AGCTACGGTTTCTGGCAGAG 59.752 55.000 17.91 8.60 0.00 3.35
4279 5210 0.246635 GAGCTACGGTTTCTGGCAGA 59.753 55.000 14.43 14.43 0.00 4.26
4280 5211 0.247736 AGAGCTACGGTTTCTGGCAG 59.752 55.000 8.58 8.58 0.00 4.85
4281 5212 0.246635 GAGAGCTACGGTTTCTGGCA 59.753 55.000 0.00 0.00 0.00 4.92
4282 5213 0.460459 GGAGAGCTACGGTTTCTGGC 60.460 60.000 0.00 0.00 0.00 4.85
4283 5214 0.175989 GGGAGAGCTACGGTTTCTGG 59.824 60.000 0.00 0.00 0.00 3.86
4284 5215 0.895530 TGGGAGAGCTACGGTTTCTG 59.104 55.000 0.00 0.00 0.00 3.02
4287 5218 1.568504 TGATGGGAGAGCTACGGTTT 58.431 50.000 0.00 0.00 0.00 3.27
4288 5219 1.568504 TTGATGGGAGAGCTACGGTT 58.431 50.000 0.00 0.00 0.00 4.44
4290 5221 2.093447 AGTTTTGATGGGAGAGCTACGG 60.093 50.000 0.00 0.00 0.00 4.02
4291 5222 3.252974 AGTTTTGATGGGAGAGCTACG 57.747 47.619 0.00 0.00 0.00 3.51
4292 5223 4.870991 GTGTAGTTTTGATGGGAGAGCTAC 59.129 45.833 0.00 0.00 0.00 3.58
4293 5224 4.777896 AGTGTAGTTTTGATGGGAGAGCTA 59.222 41.667 0.00 0.00 0.00 3.32
4295 5226 3.935828 GAGTGTAGTTTTGATGGGAGAGC 59.064 47.826 0.00 0.00 0.00 4.09
4296 5227 5.047021 TCTGAGTGTAGTTTTGATGGGAGAG 60.047 44.000 0.00 0.00 0.00 3.20
4298 5229 4.932200 GTCTGAGTGTAGTTTTGATGGGAG 59.068 45.833 0.00 0.00 0.00 4.30
4299 5230 4.346709 TGTCTGAGTGTAGTTTTGATGGGA 59.653 41.667 0.00 0.00 0.00 4.37
4301 5232 5.527214 TGTTGTCTGAGTGTAGTTTTGATGG 59.473 40.000 0.00 0.00 0.00 3.51
4302 5233 6.603237 TGTTGTCTGAGTGTAGTTTTGATG 57.397 37.500 0.00 0.00 0.00 3.07
4305 5236 7.471721 TCAAATGTTGTCTGAGTGTAGTTTTG 58.528 34.615 0.00 0.00 0.00 2.44
4306 5237 7.624360 TCAAATGTTGTCTGAGTGTAGTTTT 57.376 32.000 0.00 0.00 0.00 2.43
4307 5238 7.624360 TTCAAATGTTGTCTGAGTGTAGTTT 57.376 32.000 0.00 0.00 0.00 2.66
4308 5239 7.807977 ATTCAAATGTTGTCTGAGTGTAGTT 57.192 32.000 0.00 0.00 0.00 2.24
4309 5240 8.367911 TCTATTCAAATGTTGTCTGAGTGTAGT 58.632 33.333 0.00 0.00 0.00 2.73
4310 5241 8.763049 TCTATTCAAATGTTGTCTGAGTGTAG 57.237 34.615 0.00 0.00 0.00 2.74
4311 5242 9.154847 CATCTATTCAAATGTTGTCTGAGTGTA 57.845 33.333 0.00 0.00 0.00 2.90
4313 5244 8.260270 TCATCTATTCAAATGTTGTCTGAGTG 57.740 34.615 0.00 0.00 0.00 3.51
4314 5245 8.890718 CATCATCTATTCAAATGTTGTCTGAGT 58.109 33.333 0.00 0.00 0.00 3.41
4315 5246 7.856398 GCATCATCTATTCAAATGTTGTCTGAG 59.144 37.037 0.00 0.00 0.00 3.35
4317 5248 7.477494 TGCATCATCTATTCAAATGTTGTCTG 58.523 34.615 0.00 0.00 0.00 3.51
4318 5249 7.634671 TGCATCATCTATTCAAATGTTGTCT 57.365 32.000 0.00 0.00 0.00 3.41
4319 5250 8.867112 AATGCATCATCTATTCAAATGTTGTC 57.133 30.769 0.00 0.00 0.00 3.18
4320 5251 9.309516 GAAATGCATCATCTATTCAAATGTTGT 57.690 29.630 0.00 0.00 0.00 3.32
4321 5252 9.308318 TGAAATGCATCATCTATTCAAATGTTG 57.692 29.630 0.00 0.00 0.00 3.33
4324 5255 8.487970 GCTTGAAATGCATCATCTATTCAAATG 58.512 33.333 17.94 11.32 36.63 2.32
4326 5257 7.548967 TGCTTGAAATGCATCATCTATTCAAA 58.451 30.769 17.94 6.53 42.52 2.69
4327 5258 7.102847 TGCTTGAAATGCATCATCTATTCAA 57.897 32.000 16.91 16.91 42.52 2.69
4328 5259 6.702716 TGCTTGAAATGCATCATCTATTCA 57.297 33.333 0.00 2.02 42.52 2.57
4375 5320 1.989165 GAGTCACGATGTGCTGAACTC 59.011 52.381 0.00 2.17 32.98 3.01
4383 5328 1.200483 GGTATGCGAGTCACGATGTG 58.800 55.000 0.00 0.00 45.77 3.21
4390 5335 0.823460 TGCAGATGGTATGCGAGTCA 59.177 50.000 0.00 0.00 46.87 3.41
4394 5339 2.618442 TTGATGCAGATGGTATGCGA 57.382 45.000 0.00 0.00 46.87 5.10
4446 5391 0.873054 CTGTGGCAGAGCTGTTGAAG 59.127 55.000 0.00 0.00 32.44 3.02
4450 5395 4.787871 GTCTGTGGCAGAGCTGTT 57.212 55.556 6.80 0.00 41.46 3.16
4509 5454 2.981302 TGGCCTGTGATGAGTCCG 59.019 61.111 3.32 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.