Multiple sequence alignment - TraesCS3A01G331800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G331800 chr3A 100.000 3702 0 0 1 3702 576280386 576284087 0.000000e+00 6837.0
1 TraesCS3A01G331800 chr3B 91.286 2410 116 48 405 2785 573496991 573499335 0.000000e+00 3201.0
2 TraesCS3A01G331800 chr3B 86.744 694 64 14 3021 3702 573607705 573608382 0.000000e+00 747.0
3 TraesCS3A01G331800 chr3B 93.567 171 8 2 2791 2958 573499373 573499543 6.140000e-63 252.0
4 TraesCS3A01G331800 chr3B 81.853 259 16 9 1 256 573496769 573496999 4.880000e-44 189.0
5 TraesCS3A01G331800 chr3D 92.073 1375 58 22 564 1932 438060345 438061674 0.000000e+00 1888.0
6 TraesCS3A01G331800 chr3D 91.675 949 39 12 2034 2959 438061723 438062654 0.000000e+00 1279.0
7 TraesCS3A01G331800 chr3D 87.701 748 55 16 2983 3702 438246371 438247109 0.000000e+00 837.0
8 TraesCS3A01G331800 chr3D 88.710 248 15 10 3 244 438054827 438055067 1.300000e-74 291.0
9 TraesCS3A01G331800 chr3D 88.732 71 7 1 3428 3498 573390009 573389940 6.590000e-13 86.1
10 TraesCS3A01G331800 chr1D 85.063 636 93 2 2052 2686 405807099 405807733 0.000000e+00 647.0
11 TraesCS3A01G331800 chr1D 84.337 415 61 4 1072 1484 405803406 405803818 1.600000e-108 403.0
12 TraesCS3A01G331800 chr1A 84.394 660 101 2 2052 2710 501030470 501031128 0.000000e+00 647.0
13 TraesCS3A01G331800 chr1A 84.856 416 57 6 1072 1484 501026546 501026958 7.400000e-112 414.0
14 TraesCS3A01G331800 chr1A 97.973 148 3 0 272 419 582831712 582831859 1.320000e-64 257.0
15 TraesCS3A01G331800 chr1B 84.427 655 100 2 2052 2705 546149796 546150449 0.000000e+00 643.0
16 TraesCS3A01G331800 chr1B 85.060 415 58 4 1072 1484 546146389 546146801 1.590000e-113 420.0
17 TraesCS3A01G331800 chr5A 83.586 396 61 4 1091 1484 706217424 706217817 5.840000e-98 368.0
18 TraesCS3A01G331800 chr4B 83.333 396 62 4 1094 1487 667903411 667903018 2.720000e-96 363.0
19 TraesCS3A01G331800 chrUn 82.576 396 65 4 1091 1484 29730518 29730911 2.740000e-91 346.0
20 TraesCS3A01G331800 chrUn 82.071 396 67 4 1091 1484 29746523 29746916 5.920000e-88 335.0
21 TraesCS3A01G331800 chr2D 93.827 162 9 1 258 419 606119222 606119062 3.690000e-60 243.0
22 TraesCS3A01G331800 chr6A 90.270 185 16 2 257 441 579794601 579794419 1.330000e-59 241.0
23 TraesCS3A01G331800 chr2A 81.343 268 39 8 3438 3702 27278222 27277963 1.350000e-49 207.0
24 TraesCS3A01G331800 chr7B 90.323 62 6 0 3429 3490 137370287 137370348 8.520000e-12 82.4
25 TraesCS3A01G331800 chr4A 95.455 44 2 0 257 300 270101474 270101517 1.840000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G331800 chr3A 576280386 576284087 3701 False 6837.0 6837 100.0000 1 3702 1 chr3A.!!$F1 3701
1 TraesCS3A01G331800 chr3B 573496769 573499543 2774 False 1214.0 3201 88.9020 1 2958 3 chr3B.!!$F2 2957
2 TraesCS3A01G331800 chr3B 573607705 573608382 677 False 747.0 747 86.7440 3021 3702 1 chr3B.!!$F1 681
3 TraesCS3A01G331800 chr3D 438060345 438062654 2309 False 1583.5 1888 91.8740 564 2959 2 chr3D.!!$F3 2395
4 TraesCS3A01G331800 chr3D 438246371 438247109 738 False 837.0 837 87.7010 2983 3702 1 chr3D.!!$F2 719
5 TraesCS3A01G331800 chr1D 405803406 405807733 4327 False 525.0 647 84.7000 1072 2686 2 chr1D.!!$F1 1614
6 TraesCS3A01G331800 chr1A 501026546 501031128 4582 False 530.5 647 84.6250 1072 2710 2 chr1A.!!$F2 1638
7 TraesCS3A01G331800 chr1B 546146389 546150449 4060 False 531.5 643 84.7435 1072 2705 2 chr1B.!!$F1 1633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 402 0.035439 CCAACATCAGCCCGTAACCT 60.035 55.0 0.0 0.0 0.0 3.50 F
402 406 0.179073 CATCAGCCCGTAACCTCCTG 60.179 60.0 0.0 0.0 0.0 3.86 F
1854 4393 0.108756 GGGACAAGTACGACCTCAGC 60.109 60.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1389 1401 0.170561 GCGTGAAGAGCTCGAGGTTA 59.829 55.0 19.66 3.26 35.64 2.85 R
2042 4681 0.319383 ATCATGTCCTGCTCGATCGC 60.319 55.0 11.09 0.00 0.00 4.58 R
3508 6659 0.313672 TGTGCCGGCAAATCTCAAAC 59.686 50.0 34.66 16.23 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.636647 TGACCATGAACAAGAGCACA 57.363 45.000 0.00 0.00 0.00 4.57
42 43 3.608474 GCACACGACATTTAGTTGTTCCC 60.608 47.826 0.00 0.00 42.31 3.97
43 44 2.803956 ACACGACATTTAGTTGTTCCCG 59.196 45.455 0.00 0.00 42.31 5.14
44 45 2.803956 CACGACATTTAGTTGTTCCCGT 59.196 45.455 0.00 0.00 42.31 5.28
45 46 3.989167 CACGACATTTAGTTGTTCCCGTA 59.011 43.478 0.00 0.00 42.31 4.02
46 47 3.989817 ACGACATTTAGTTGTTCCCGTAC 59.010 43.478 0.00 0.00 42.31 3.67
47 48 4.240096 CGACATTTAGTTGTTCCCGTACT 58.760 43.478 0.00 0.00 0.00 2.73
48 49 4.687483 CGACATTTAGTTGTTCCCGTACTT 59.313 41.667 0.00 0.00 0.00 2.24
49 50 5.389098 CGACATTTAGTTGTTCCCGTACTTG 60.389 44.000 0.00 0.00 0.00 3.16
51 52 6.523840 ACATTTAGTTGTTCCCGTACTTGTA 58.476 36.000 0.00 0.00 0.00 2.41
52 53 6.991531 ACATTTAGTTGTTCCCGTACTTGTAA 59.008 34.615 0.00 0.00 0.00 2.41
53 54 7.662669 ACATTTAGTTGTTCCCGTACTTGTAAT 59.337 33.333 0.00 0.00 0.00 1.89
54 55 7.424227 TTTAGTTGTTCCCGTACTTGTAATG 57.576 36.000 0.00 0.00 0.00 1.90
55 56 4.320870 AGTTGTTCCCGTACTTGTAATGG 58.679 43.478 0.00 0.00 0.00 3.16
56 57 4.040706 AGTTGTTCCCGTACTTGTAATGGA 59.959 41.667 0.00 0.39 0.00 3.41
57 58 4.829872 TGTTCCCGTACTTGTAATGGAT 57.170 40.909 0.00 0.00 0.00 3.41
58 59 4.509616 TGTTCCCGTACTTGTAATGGATG 58.490 43.478 0.00 0.00 0.00 3.51
59 60 4.020039 TGTTCCCGTACTTGTAATGGATGT 60.020 41.667 0.00 0.00 0.00 3.06
60 61 4.131649 TCCCGTACTTGTAATGGATGTG 57.868 45.455 0.00 0.00 0.00 3.21
61 62 3.770388 TCCCGTACTTGTAATGGATGTGA 59.230 43.478 0.00 0.00 0.00 3.58
62 63 4.223255 TCCCGTACTTGTAATGGATGTGAA 59.777 41.667 0.00 0.00 0.00 3.18
63 64 4.331717 CCCGTACTTGTAATGGATGTGAAC 59.668 45.833 0.00 0.00 0.00 3.18
64 65 5.175859 CCGTACTTGTAATGGATGTGAACT 58.824 41.667 0.00 0.00 0.00 3.01
65 66 5.291128 CCGTACTTGTAATGGATGTGAACTC 59.709 44.000 0.00 0.00 0.00 3.01
66 67 5.291128 CGTACTTGTAATGGATGTGAACTCC 59.709 44.000 0.00 0.00 0.00 3.85
67 68 5.241403 ACTTGTAATGGATGTGAACTCCA 57.759 39.130 0.00 0.00 46.45 3.86
68 69 5.630121 ACTTGTAATGGATGTGAACTCCAA 58.370 37.500 0.00 0.00 45.57 3.53
69 70 6.248433 ACTTGTAATGGATGTGAACTCCAAT 58.752 36.000 0.00 0.00 45.57 3.16
74 75 4.280436 TGGATGTGAACTCCAATAACGT 57.720 40.909 0.00 0.00 39.83 3.99
139 140 8.429237 AAAAGGAAATATGTTAACATGGTCCA 57.571 30.769 29.61 15.94 37.15 4.02
151 152 7.285629 TGTTAACATGGTCCATGAAAACAGTTA 59.714 33.333 33.99 18.53 43.81 2.24
152 153 6.916360 AACATGGTCCATGAAAACAGTTAT 57.084 33.333 33.99 8.49 43.81 1.89
202 206 5.117592 GCAAACAGTGAAAAATCTGATTCCG 59.882 40.000 2.92 0.00 35.84 4.30
203 207 4.425577 ACAGTGAAAAATCTGATTCCGC 57.574 40.909 2.92 3.62 35.84 5.54
204 208 3.120199 ACAGTGAAAAATCTGATTCCGCG 60.120 43.478 0.00 0.00 35.84 6.46
205 209 2.159517 AGTGAAAAATCTGATTCCGCGC 60.160 45.455 0.00 0.00 0.00 6.86
206 210 1.132262 TGAAAAATCTGATTCCGCGCC 59.868 47.619 0.00 0.00 0.00 6.53
227 231 5.462068 CGCCTGAATCTCGTAAAATATGTGA 59.538 40.000 0.00 0.00 0.00 3.58
229 233 6.480320 GCCTGAATCTCGTAAAATATGTGACT 59.520 38.462 0.00 0.00 0.00 3.41
252 256 2.029666 ACAGGTCAGACGCTGCAC 59.970 61.111 15.33 0.00 0.00 4.57
256 260 0.038159 AGGTCAGACGCTGCACTAAC 60.038 55.000 0.00 0.00 0.00 2.34
257 261 0.319555 GGTCAGACGCTGCACTAACA 60.320 55.000 0.00 0.00 0.00 2.41
258 262 1.497991 GTCAGACGCTGCACTAACAA 58.502 50.000 0.00 0.00 0.00 2.83
259 263 1.864711 GTCAGACGCTGCACTAACAAA 59.135 47.619 0.00 0.00 0.00 2.83
260 264 2.286833 GTCAGACGCTGCACTAACAAAA 59.713 45.455 0.00 0.00 0.00 2.44
261 265 2.939756 TCAGACGCTGCACTAACAAAAA 59.060 40.909 0.00 0.00 0.00 1.94
262 266 3.563808 TCAGACGCTGCACTAACAAAAAT 59.436 39.130 0.00 0.00 0.00 1.82
263 267 3.908382 CAGACGCTGCACTAACAAAAATC 59.092 43.478 0.00 0.00 0.00 2.17
264 268 2.902484 GACGCTGCACTAACAAAAATCG 59.098 45.455 0.00 0.00 0.00 3.34
265 269 2.289547 ACGCTGCACTAACAAAAATCGT 59.710 40.909 0.00 0.00 0.00 3.73
266 270 3.495377 ACGCTGCACTAACAAAAATCGTA 59.505 39.130 0.00 0.00 0.00 3.43
267 271 3.838550 CGCTGCACTAACAAAAATCGTAC 59.161 43.478 0.00 0.00 0.00 3.67
268 272 4.609559 CGCTGCACTAACAAAAATCGTACA 60.610 41.667 0.00 0.00 0.00 2.90
269 273 4.611366 GCTGCACTAACAAAAATCGTACAC 59.389 41.667 0.00 0.00 0.00 2.90
270 274 5.560183 GCTGCACTAACAAAAATCGTACACT 60.560 40.000 0.00 0.00 0.00 3.55
271 275 6.366315 TGCACTAACAAAAATCGTACACTT 57.634 33.333 0.00 0.00 0.00 3.16
272 276 7.479897 TGCACTAACAAAAATCGTACACTTA 57.520 32.000 0.00 0.00 0.00 2.24
273 277 7.346695 TGCACTAACAAAAATCGTACACTTAC 58.653 34.615 0.00 0.00 0.00 2.34
286 290 6.838897 CGTACACTTACGGAAAACTACTAC 57.161 41.667 0.00 0.00 46.18 2.73
287 291 6.370593 CGTACACTTACGGAAAACTACTACA 58.629 40.000 0.00 0.00 46.18 2.74
288 292 6.521133 CGTACACTTACGGAAAACTACTACAG 59.479 42.308 0.00 0.00 46.18 2.74
289 293 5.776744 ACACTTACGGAAAACTACTACAGG 58.223 41.667 0.00 0.00 0.00 4.00
290 294 4.624452 CACTTACGGAAAACTACTACAGGC 59.376 45.833 0.00 0.00 0.00 4.85
291 295 4.525874 ACTTACGGAAAACTACTACAGGCT 59.474 41.667 0.00 0.00 0.00 4.58
292 296 3.314541 ACGGAAAACTACTACAGGCTG 57.685 47.619 14.16 14.16 0.00 4.85
293 297 2.028385 ACGGAAAACTACTACAGGCTGG 60.028 50.000 20.34 4.16 0.00 4.85
294 298 2.028385 CGGAAAACTACTACAGGCTGGT 60.028 50.000 20.34 10.50 0.00 4.00
295 299 3.556423 CGGAAAACTACTACAGGCTGGTT 60.556 47.826 20.34 9.77 0.00 3.67
296 300 4.001652 GGAAAACTACTACAGGCTGGTTC 58.998 47.826 20.34 8.30 0.00 3.62
297 301 4.262938 GGAAAACTACTACAGGCTGGTTCT 60.263 45.833 20.34 0.00 0.00 3.01
298 302 5.046807 GGAAAACTACTACAGGCTGGTTCTA 60.047 44.000 20.34 0.63 0.00 2.10
299 303 5.402997 AAACTACTACAGGCTGGTTCTAC 57.597 43.478 20.34 0.00 0.00 2.59
300 304 3.015327 ACTACTACAGGCTGGTTCTACG 58.985 50.000 20.34 3.40 0.00 3.51
301 305 1.183549 ACTACAGGCTGGTTCTACGG 58.816 55.000 20.34 2.09 0.00 4.02
302 306 1.272313 ACTACAGGCTGGTTCTACGGA 60.272 52.381 20.34 0.00 0.00 4.69
303 307 1.134560 CTACAGGCTGGTTCTACGGAC 59.865 57.143 20.34 0.00 0.00 4.79
304 308 1.153823 CAGGCTGGTTCTACGGACG 60.154 63.158 6.61 0.00 0.00 4.79
305 309 2.183555 GGCTGGTTCTACGGACGG 59.816 66.667 0.00 0.00 0.00 4.79
306 310 2.345760 GGCTGGTTCTACGGACGGA 61.346 63.158 0.00 0.00 0.00 4.69
307 311 1.673808 GGCTGGTTCTACGGACGGAT 61.674 60.000 0.00 0.00 0.00 4.18
308 312 0.175073 GCTGGTTCTACGGACGGATT 59.825 55.000 0.00 0.00 0.00 3.01
309 313 1.405121 GCTGGTTCTACGGACGGATTT 60.405 52.381 0.00 0.00 0.00 2.17
310 314 2.268298 CTGGTTCTACGGACGGATTTG 58.732 52.381 0.00 0.00 0.00 2.32
311 315 1.619827 TGGTTCTACGGACGGATTTGT 59.380 47.619 0.00 0.00 0.00 2.83
312 316 2.265683 GGTTCTACGGACGGATTTGTC 58.734 52.381 0.00 0.00 38.17 3.18
321 325 2.894902 GACGGATTTGTCCTTCTCTCC 58.105 52.381 0.00 0.00 32.61 3.71
322 326 2.233922 GACGGATTTGTCCTTCTCTCCA 59.766 50.000 0.00 0.00 32.61 3.86
323 327 2.028020 ACGGATTTGTCCTTCTCTCCAC 60.028 50.000 0.00 0.00 0.00 4.02
324 328 2.678190 CGGATTTGTCCTTCTCTCCACC 60.678 54.545 0.00 0.00 0.00 4.61
325 329 2.622436 GATTTGTCCTTCTCTCCACCG 58.378 52.381 0.00 0.00 0.00 4.94
326 330 1.420430 TTTGTCCTTCTCTCCACCGT 58.580 50.000 0.00 0.00 0.00 4.83
327 331 2.297698 TTGTCCTTCTCTCCACCGTA 57.702 50.000 0.00 0.00 0.00 4.02
328 332 1.835494 TGTCCTTCTCTCCACCGTAG 58.165 55.000 0.00 0.00 0.00 3.51
329 333 1.353358 TGTCCTTCTCTCCACCGTAGA 59.647 52.381 0.00 0.00 0.00 2.59
330 334 2.025226 TGTCCTTCTCTCCACCGTAGAT 60.025 50.000 0.00 0.00 0.00 1.98
331 335 3.025262 GTCCTTCTCTCCACCGTAGATT 58.975 50.000 0.00 0.00 0.00 2.40
332 336 3.067040 GTCCTTCTCTCCACCGTAGATTC 59.933 52.174 0.00 0.00 0.00 2.52
333 337 3.053544 TCCTTCTCTCCACCGTAGATTCT 60.054 47.826 0.00 0.00 0.00 2.40
334 338 3.316868 CCTTCTCTCCACCGTAGATTCTC 59.683 52.174 0.00 0.00 0.00 2.87
335 339 2.933573 TCTCTCCACCGTAGATTCTCC 58.066 52.381 0.00 0.00 0.00 3.71
336 340 2.510382 TCTCTCCACCGTAGATTCTCCT 59.490 50.000 0.00 0.00 0.00 3.69
337 341 2.882137 CTCTCCACCGTAGATTCTCCTC 59.118 54.545 0.00 0.00 0.00 3.71
338 342 1.957877 CTCCACCGTAGATTCTCCTCC 59.042 57.143 0.00 0.00 0.00 4.30
339 343 1.569548 TCCACCGTAGATTCTCCTCCT 59.430 52.381 0.00 0.00 0.00 3.69
340 344 1.957877 CCACCGTAGATTCTCCTCCTC 59.042 57.143 0.00 0.00 0.00 3.71
341 345 1.604755 CACCGTAGATTCTCCTCCTCG 59.395 57.143 0.00 0.00 0.00 4.63
342 346 1.212441 ACCGTAGATTCTCCTCCTCGT 59.788 52.381 0.00 0.00 0.00 4.18
343 347 1.604755 CCGTAGATTCTCCTCCTCGTG 59.395 57.143 0.00 0.00 0.00 4.35
344 348 2.562635 CGTAGATTCTCCTCCTCGTGA 58.437 52.381 0.00 0.00 0.00 4.35
345 349 3.142951 CGTAGATTCTCCTCCTCGTGAT 58.857 50.000 0.00 0.00 0.00 3.06
346 350 3.566322 CGTAGATTCTCCTCCTCGTGATT 59.434 47.826 0.00 0.00 0.00 2.57
347 351 4.036971 CGTAGATTCTCCTCCTCGTGATTT 59.963 45.833 0.00 0.00 0.00 2.17
348 352 5.450688 CGTAGATTCTCCTCCTCGTGATTTT 60.451 44.000 0.00 0.00 0.00 1.82
349 353 6.238676 CGTAGATTCTCCTCCTCGTGATTTTA 60.239 42.308 0.00 0.00 0.00 1.52
350 354 6.546428 AGATTCTCCTCCTCGTGATTTTAA 57.454 37.500 0.00 0.00 0.00 1.52
351 355 6.342111 AGATTCTCCTCCTCGTGATTTTAAC 58.658 40.000 0.00 0.00 0.00 2.01
352 356 5.740290 TTCTCCTCCTCGTGATTTTAACT 57.260 39.130 0.00 0.00 0.00 2.24
353 357 5.073311 TCTCCTCCTCGTGATTTTAACTG 57.927 43.478 0.00 0.00 0.00 3.16
354 358 4.770531 TCTCCTCCTCGTGATTTTAACTGA 59.229 41.667 0.00 0.00 0.00 3.41
355 359 4.817517 TCCTCCTCGTGATTTTAACTGAC 58.182 43.478 0.00 0.00 0.00 3.51
356 360 3.933332 CCTCCTCGTGATTTTAACTGACC 59.067 47.826 0.00 0.00 0.00 4.02
357 361 3.933332 CTCCTCGTGATTTTAACTGACCC 59.067 47.826 0.00 0.00 0.00 4.46
358 362 3.007635 CCTCGTGATTTTAACTGACCCC 58.992 50.000 0.00 0.00 0.00 4.95
359 363 3.558321 CCTCGTGATTTTAACTGACCCCA 60.558 47.826 0.00 0.00 0.00 4.96
360 364 3.404899 TCGTGATTTTAACTGACCCCAC 58.595 45.455 0.00 0.00 0.00 4.61
361 365 3.071892 TCGTGATTTTAACTGACCCCACT 59.928 43.478 0.00 0.00 0.00 4.00
362 366 3.818773 CGTGATTTTAACTGACCCCACTT 59.181 43.478 0.00 0.00 0.00 3.16
363 367 4.083484 CGTGATTTTAACTGACCCCACTTC 60.083 45.833 0.00 0.00 0.00 3.01
364 368 4.217767 GTGATTTTAACTGACCCCACTTCC 59.782 45.833 0.00 0.00 0.00 3.46
365 369 4.105697 TGATTTTAACTGACCCCACTTCCT 59.894 41.667 0.00 0.00 0.00 3.36
366 370 3.502123 TTTAACTGACCCCACTTCCTG 57.498 47.619 0.00 0.00 0.00 3.86
367 371 2.409064 TAACTGACCCCACTTCCTGA 57.591 50.000 0.00 0.00 0.00 3.86
368 372 1.747444 AACTGACCCCACTTCCTGAT 58.253 50.000 0.00 0.00 0.00 2.90
369 373 1.747444 ACTGACCCCACTTCCTGATT 58.253 50.000 0.00 0.00 0.00 2.57
370 374 2.065799 ACTGACCCCACTTCCTGATTT 58.934 47.619 0.00 0.00 0.00 2.17
371 375 2.447047 ACTGACCCCACTTCCTGATTTT 59.553 45.455 0.00 0.00 0.00 1.82
372 376 3.655777 ACTGACCCCACTTCCTGATTTTA 59.344 43.478 0.00 0.00 0.00 1.52
373 377 4.105697 ACTGACCCCACTTCCTGATTTTAA 59.894 41.667 0.00 0.00 0.00 1.52
374 378 5.222337 ACTGACCCCACTTCCTGATTTTAAT 60.222 40.000 0.00 0.00 0.00 1.40
375 379 5.650283 TGACCCCACTTCCTGATTTTAATT 58.350 37.500 0.00 0.00 0.00 1.40
376 380 5.480073 TGACCCCACTTCCTGATTTTAATTG 59.520 40.000 0.00 0.00 0.00 2.32
377 381 4.777366 ACCCCACTTCCTGATTTTAATTGG 59.223 41.667 0.00 0.00 0.00 3.16
378 382 4.162131 CCCCACTTCCTGATTTTAATTGGG 59.838 45.833 0.00 0.00 40.82 4.12
379 383 4.383010 CCCACTTCCTGATTTTAATTGGGC 60.383 45.833 0.00 0.00 36.61 5.36
380 384 4.383010 CCACTTCCTGATTTTAATTGGGCC 60.383 45.833 0.00 0.00 0.00 5.80
381 385 4.222588 CACTTCCTGATTTTAATTGGGCCA 59.777 41.667 0.00 0.00 0.00 5.36
382 386 4.843516 ACTTCCTGATTTTAATTGGGCCAA 59.156 37.500 23.33 23.33 0.00 4.52
383 387 4.817318 TCCTGATTTTAATTGGGCCAAC 57.183 40.909 23.59 7.52 0.00 3.77
384 388 4.163427 TCCTGATTTTAATTGGGCCAACA 58.837 39.130 23.59 12.12 0.00 3.33
385 389 4.782156 TCCTGATTTTAATTGGGCCAACAT 59.218 37.500 23.59 16.16 0.00 2.71
386 390 5.104982 TCCTGATTTTAATTGGGCCAACATC 60.105 40.000 23.59 16.99 0.00 3.06
387 391 5.338219 CCTGATTTTAATTGGGCCAACATCA 60.338 40.000 23.59 20.16 0.00 3.07
388 392 5.732633 TGATTTTAATTGGGCCAACATCAG 58.267 37.500 23.59 0.00 0.00 2.90
389 393 3.608316 TTTAATTGGGCCAACATCAGC 57.392 42.857 23.59 0.00 0.00 4.26
394 398 2.270850 GGCCAACATCAGCCCGTA 59.729 61.111 0.00 0.00 43.76 4.02
395 399 1.377987 GGCCAACATCAGCCCGTAA 60.378 57.895 0.00 0.00 43.76 3.18
396 400 1.654023 GGCCAACATCAGCCCGTAAC 61.654 60.000 0.00 0.00 43.76 2.50
397 401 1.654023 GCCAACATCAGCCCGTAACC 61.654 60.000 0.00 0.00 0.00 2.85
398 402 0.035439 CCAACATCAGCCCGTAACCT 60.035 55.000 0.00 0.00 0.00 3.50
399 403 1.369625 CAACATCAGCCCGTAACCTC 58.630 55.000 0.00 0.00 0.00 3.85
400 404 0.252197 AACATCAGCCCGTAACCTCC 59.748 55.000 0.00 0.00 0.00 4.30
401 405 0.617820 ACATCAGCCCGTAACCTCCT 60.618 55.000 0.00 0.00 0.00 3.69
402 406 0.179073 CATCAGCCCGTAACCTCCTG 60.179 60.000 0.00 0.00 0.00 3.86
403 407 0.617820 ATCAGCCCGTAACCTCCTGT 60.618 55.000 0.00 0.00 0.00 4.00
404 408 1.218316 CAGCCCGTAACCTCCTGTC 59.782 63.158 0.00 0.00 0.00 3.51
405 409 1.078710 AGCCCGTAACCTCCTGTCT 59.921 57.895 0.00 0.00 0.00 3.41
406 410 1.218316 GCCCGTAACCTCCTGTCTG 59.782 63.158 0.00 0.00 0.00 3.51
407 411 1.542187 GCCCGTAACCTCCTGTCTGT 61.542 60.000 0.00 0.00 0.00 3.41
408 412 1.843368 CCCGTAACCTCCTGTCTGTA 58.157 55.000 0.00 0.00 0.00 2.74
409 413 1.749634 CCCGTAACCTCCTGTCTGTAG 59.250 57.143 0.00 0.00 0.00 2.74
410 414 2.444421 CCGTAACCTCCTGTCTGTAGT 58.556 52.381 0.00 0.00 0.00 2.73
411 415 3.614092 CCGTAACCTCCTGTCTGTAGTA 58.386 50.000 0.00 0.00 0.00 1.82
412 416 4.012374 CCGTAACCTCCTGTCTGTAGTAA 58.988 47.826 0.00 0.00 0.00 2.24
413 417 4.643784 CCGTAACCTCCTGTCTGTAGTAAT 59.356 45.833 0.00 0.00 0.00 1.89
414 418 5.126707 CCGTAACCTCCTGTCTGTAGTAATT 59.873 44.000 0.00 0.00 0.00 1.40
415 419 6.264088 CGTAACCTCCTGTCTGTAGTAATTC 58.736 44.000 0.00 0.00 0.00 2.17
423 427 6.153000 TCCTGTCTGTAGTAATTCTCCACTTC 59.847 42.308 0.00 0.00 0.00 3.01
439 443 1.667724 ACTTCAGATATTGCACAGCGC 59.332 47.619 0.00 0.00 42.89 5.92
539 543 0.832135 ATAGATCCGACGGCCACCAT 60.832 55.000 9.66 0.00 0.00 3.55
552 556 2.278857 ACCATGCGCGATCGACTC 60.279 61.111 21.57 7.02 38.10 3.36
560 564 1.715862 CGCGATCGACTCCAGAGGAA 61.716 60.000 21.57 0.00 38.10 3.36
562 566 1.095600 CGATCGACTCCAGAGGAACA 58.904 55.000 10.26 0.00 0.00 3.18
570 574 2.896685 ACTCCAGAGGAACAGAACAGAG 59.103 50.000 0.00 0.00 0.00 3.35
599 603 0.888619 TCCTGAGAAGACGACGCATT 59.111 50.000 0.00 0.00 0.00 3.56
610 614 3.088552 GACGACGCATTAACCGATTTTG 58.911 45.455 0.00 0.00 0.00 2.44
634 639 1.466167 CCCTCTCGATGCAAACAACAG 59.534 52.381 0.00 0.00 0.00 3.16
643 648 3.213206 TGCAAACAACAGACCTGAGAT 57.787 42.857 3.76 0.00 0.00 2.75
750 762 0.892755 TTATGAAGGACCACGCTCGT 59.107 50.000 0.00 0.00 0.00 4.18
753 765 1.444553 GAAGGACCACGCTCGTCAG 60.445 63.158 0.00 0.00 31.55 3.51
754 766 1.863662 GAAGGACCACGCTCGTCAGA 61.864 60.000 0.00 0.00 31.55 3.27
755 767 2.126424 GGACCACGCTCGTCAGAC 60.126 66.667 0.00 0.00 31.55 3.51
759 771 0.885879 ACCACGCTCGTCAGACATTA 59.114 50.000 0.41 0.00 0.00 1.90
762 774 2.734606 CCACGCTCGTCAGACATTAAAA 59.265 45.455 0.41 0.00 0.00 1.52
763 775 3.423123 CCACGCTCGTCAGACATTAAAAC 60.423 47.826 0.41 0.00 0.00 2.43
764 776 2.735134 ACGCTCGTCAGACATTAAAACC 59.265 45.455 0.41 0.00 0.00 3.27
765 777 2.734606 CGCTCGTCAGACATTAAAACCA 59.265 45.455 0.41 0.00 0.00 3.67
766 778 3.181530 CGCTCGTCAGACATTAAAACCAG 60.182 47.826 0.41 0.00 0.00 4.00
767 779 3.424962 GCTCGTCAGACATTAAAACCAGC 60.425 47.826 0.41 0.00 0.00 4.85
768 780 2.734606 TCGTCAGACATTAAAACCAGCG 59.265 45.455 0.41 0.00 0.00 5.18
808 820 1.284657 CTACCATGAGCTCAAGCACG 58.715 55.000 22.50 6.32 45.16 5.34
818 830 1.081892 CTCAAGCACGGATGAACCAG 58.918 55.000 0.00 0.00 38.90 4.00
819 831 0.321564 TCAAGCACGGATGAACCAGG 60.322 55.000 0.00 0.00 38.90 4.45
820 832 0.321564 CAAGCACGGATGAACCAGGA 60.322 55.000 0.00 0.00 38.90 3.86
821 833 0.400213 AAGCACGGATGAACCAGGAA 59.600 50.000 0.00 0.00 38.90 3.36
822 834 0.400213 AGCACGGATGAACCAGGAAA 59.600 50.000 0.00 0.00 38.90 3.13
823 835 1.004745 AGCACGGATGAACCAGGAAAT 59.995 47.619 0.00 0.00 38.90 2.17
840 852 5.476599 CAGGAAATGGAATGGTTGTGAAGTA 59.523 40.000 0.00 0.00 0.00 2.24
841 853 6.153340 CAGGAAATGGAATGGTTGTGAAGTAT 59.847 38.462 0.00 0.00 0.00 2.12
842 854 7.339212 CAGGAAATGGAATGGTTGTGAAGTATA 59.661 37.037 0.00 0.00 0.00 1.47
847 859 6.346096 TGGAATGGTTGTGAAGTATACTAGC 58.654 40.000 5.65 2.32 0.00 3.42
870 882 2.908796 GGTGGTAGGTAGCCAGGC 59.091 66.667 1.84 1.84 36.57 4.85
871 883 1.993391 GGTGGTAGGTAGCCAGGCA 60.993 63.158 15.80 0.00 36.57 4.75
872 884 1.522569 GTGGTAGGTAGCCAGGCAG 59.477 63.158 15.80 0.00 36.57 4.85
874 886 1.382695 GGTAGGTAGCCAGGCAGGA 60.383 63.158 15.80 0.00 41.22 3.86
877 889 0.687757 TAGGTAGCCAGGCAGGAGTG 60.688 60.000 15.80 0.00 41.22 3.51
878 890 2.294078 GGTAGCCAGGCAGGAGTGT 61.294 63.158 15.80 0.00 41.22 3.55
986 998 3.453679 ACTCCGGGCGAGAAGAGC 61.454 66.667 0.00 0.00 41.63 4.09
998 1010 1.206849 GAGAAGAGCCCAAGAGTCAGG 59.793 57.143 0.00 0.00 0.00 3.86
1070 1082 4.504916 CACGGCGCTCCTCCTCAG 62.505 72.222 6.90 0.00 0.00 3.35
1410 1422 2.202676 CTCGAGCTCTTCACGCCC 60.203 66.667 12.85 0.00 0.00 6.13
1477 1489 3.626680 ATGGTCGAGTCCGTGCACG 62.627 63.158 31.77 31.77 37.05 5.34
1530 4069 0.389757 GGGAGTTCCTCGCTATGGTC 59.610 60.000 0.00 0.00 39.79 4.02
1854 4393 0.108756 GGGACAAGTACGACCTCAGC 60.109 60.000 0.00 0.00 0.00 4.26
1884 4423 1.077212 CATTGGCCTCCTCTGGGTG 60.077 63.158 3.32 0.00 0.00 4.61
1885 4424 2.311854 ATTGGCCTCCTCTGGGTGG 61.312 63.158 3.32 0.00 46.12 4.61
1889 4428 1.615424 GCCTCCTCTGGGTGGGTAA 60.615 63.158 5.48 0.00 44.19 2.85
1890 4429 0.988678 GCCTCCTCTGGGTGGGTAAT 60.989 60.000 5.48 0.00 44.19 1.89
1891 4430 1.132500 CCTCCTCTGGGTGGGTAATC 58.868 60.000 0.00 0.00 41.28 1.75
1892 4431 1.625228 CCTCCTCTGGGTGGGTAATCA 60.625 57.143 0.00 0.00 41.28 2.57
1893 4432 2.196595 CTCCTCTGGGTGGGTAATCAA 58.803 52.381 0.00 0.00 0.00 2.57
1894 4433 2.780010 CTCCTCTGGGTGGGTAATCAAT 59.220 50.000 0.00 0.00 0.00 2.57
1896 4435 2.509548 CCTCTGGGTGGGTAATCAATCA 59.490 50.000 0.00 0.00 0.00 2.57
1897 4436 3.053693 CCTCTGGGTGGGTAATCAATCAA 60.054 47.826 0.00 0.00 0.00 2.57
1900 4439 4.955450 TCTGGGTGGGTAATCAATCAATTG 59.045 41.667 0.00 0.00 39.10 2.32
1932 4475 4.568072 ATGCCGCCATTCCATATTAGTA 57.432 40.909 0.00 0.00 0.00 1.82
1933 4476 3.937814 TGCCGCCATTCCATATTAGTAG 58.062 45.455 0.00 0.00 0.00 2.57
1935 4478 4.528987 TGCCGCCATTCCATATTAGTAGTA 59.471 41.667 0.00 0.00 0.00 1.82
1936 4479 5.012251 TGCCGCCATTCCATATTAGTAGTAA 59.988 40.000 0.00 0.00 0.00 2.24
1938 4481 6.258068 GCCGCCATTCCATATTAGTAGTAATC 59.742 42.308 6.08 0.00 31.04 1.75
1940 4483 7.277981 CCGCCATTCCATATTAGTAGTAATCAC 59.722 40.741 6.08 0.00 31.04 3.06
1947 4490 9.445878 TCCATATTAGTAGTAATCACTAGACCG 57.554 37.037 6.08 0.00 37.94 4.79
1948 4491 9.445878 CCATATTAGTAGTAATCACTAGACCGA 57.554 37.037 6.08 0.00 37.94 4.69
1951 4494 4.764172 AGTAGTAATCACTAGACCGACGT 58.236 43.478 0.00 0.00 37.94 4.34
1952 4495 4.569966 AGTAGTAATCACTAGACCGACGTG 59.430 45.833 0.00 0.00 37.94 4.49
1953 4496 3.603532 AGTAATCACTAGACCGACGTGA 58.396 45.455 0.00 0.00 41.36 4.35
1970 4513 4.312443 ACGTGATAACCACTACACCAAAG 58.688 43.478 0.00 0.00 43.53 2.77
1971 4514 3.124636 CGTGATAACCACTACACCAAAGC 59.875 47.826 0.00 0.00 43.53 3.51
1972 4515 4.069304 GTGATAACCACTACACCAAAGCA 58.931 43.478 0.00 0.00 42.44 3.91
1976 4519 2.028876 ACCACTACACCAAAGCAAACC 58.971 47.619 0.00 0.00 0.00 3.27
1981 4524 4.803613 CACTACACCAAAGCAAACCTTTTC 59.196 41.667 0.00 0.00 41.75 2.29
1984 4527 5.869649 ACACCAAAGCAAACCTTTTCTAT 57.130 34.783 0.00 0.00 41.75 1.98
1986 4529 6.280643 ACACCAAAGCAAACCTTTTCTATTC 58.719 36.000 0.00 0.00 41.75 1.75
1987 4530 5.696270 CACCAAAGCAAACCTTTTCTATTCC 59.304 40.000 0.00 0.00 41.75 3.01
1988 4531 4.923281 CCAAAGCAAACCTTTTCTATTCCG 59.077 41.667 0.00 0.00 41.75 4.30
1991 4534 7.312899 CAAAGCAAACCTTTTCTATTCCGTAT 58.687 34.615 0.00 0.00 41.75 3.06
1994 4537 8.747538 AGCAAACCTTTTCTATTCCGTATTAT 57.252 30.769 0.00 0.00 0.00 1.28
1996 4539 9.233232 GCAAACCTTTTCTATTCCGTATTATTG 57.767 33.333 0.00 0.00 0.00 1.90
2015 4654 5.937165 ATTGTCGCGATTTGATTTGATTG 57.063 34.783 14.06 0.00 0.00 2.67
2017 4656 5.233957 TGTCGCGATTTGATTTGATTGAT 57.766 34.783 14.06 0.00 0.00 2.57
2019 4658 5.738693 TGTCGCGATTTGATTTGATTGATTC 59.261 36.000 14.06 0.00 0.00 2.52
2025 4664 7.325338 GCGATTTGATTTGATTGATTCGATCAT 59.675 33.333 15.76 3.95 39.39 2.45
2034 4673 9.887406 TTTGATTGATTCGATCATTCATATGTG 57.113 29.630 15.76 0.00 44.38 3.21
2035 4674 8.611654 TGATTGATTCGATCATTCATATGTGT 57.388 30.769 11.83 0.00 41.84 3.72
2040 4679 4.440880 TCGATCATTCATATGTGTGTGCA 58.559 39.130 1.90 0.00 33.34 4.57
2041 4680 4.270808 TCGATCATTCATATGTGTGTGCAC 59.729 41.667 10.75 10.75 45.44 4.57
2233 5298 1.227380 CTACCTGCAGGCCATCGTC 60.227 63.158 33.06 0.00 39.32 4.20
2440 5505 2.009774 GACAACATCGACATCAAGGGG 58.990 52.381 0.00 0.00 0.00 4.79
2710 5775 1.226802 CGAGATGTGAGCGACCTGG 60.227 63.158 0.00 0.00 0.00 4.45
2712 5777 1.305297 AGATGTGAGCGACCTGGGA 60.305 57.895 0.00 0.00 0.00 4.37
2730 5813 1.343069 GACTCCTGGTGGTTCAGAGT 58.657 55.000 0.33 0.00 36.93 3.24
2788 5874 4.690096 CGAGTTCTTCGTAGCTACTATCG 58.310 47.826 21.20 12.08 44.27 2.92
2789 5875 4.376210 CGAGTTCTTCGTAGCTACTATCGG 60.376 50.000 21.20 5.89 44.27 4.18
2922 6045 2.167693 ACACAAGTTCTCAACGTCCTCA 59.832 45.455 0.00 0.00 36.23 3.86
2959 6082 2.920647 GCCAAACAACACTACGATTGCC 60.921 50.000 0.00 0.00 0.00 4.52
2960 6083 2.292016 CCAAACAACACTACGATTGCCA 59.708 45.455 0.00 0.00 0.00 4.92
2961 6084 3.057596 CCAAACAACACTACGATTGCCAT 60.058 43.478 0.00 0.00 0.00 4.40
2962 6085 3.829886 AACAACACTACGATTGCCATG 57.170 42.857 0.00 0.00 0.00 3.66
2963 6086 2.778299 ACAACACTACGATTGCCATGT 58.222 42.857 0.00 0.00 0.00 3.21
2964 6087 2.742053 ACAACACTACGATTGCCATGTC 59.258 45.455 0.00 0.00 0.00 3.06
2965 6088 3.002791 CAACACTACGATTGCCATGTCT 58.997 45.455 0.00 0.00 0.00 3.41
2966 6089 2.893637 ACACTACGATTGCCATGTCTC 58.106 47.619 0.00 0.00 0.00 3.36
2967 6090 2.205074 CACTACGATTGCCATGTCTCC 58.795 52.381 0.00 0.00 0.00 3.71
2968 6091 1.831106 ACTACGATTGCCATGTCTCCA 59.169 47.619 0.00 0.00 0.00 3.86
2969 6092 2.159043 ACTACGATTGCCATGTCTCCAG 60.159 50.000 0.00 0.00 0.00 3.86
2970 6093 0.904649 ACGATTGCCATGTCTCCAGA 59.095 50.000 0.00 0.00 0.00 3.86
2971 6094 1.278985 ACGATTGCCATGTCTCCAGAA 59.721 47.619 0.00 0.00 0.00 3.02
2972 6095 2.290260 ACGATTGCCATGTCTCCAGAAA 60.290 45.455 0.00 0.00 0.00 2.52
2973 6096 2.353889 CGATTGCCATGTCTCCAGAAAG 59.646 50.000 0.00 0.00 0.00 2.62
2974 6097 2.205022 TTGCCATGTCTCCAGAAAGG 57.795 50.000 0.00 0.00 39.47 3.11
2975 6098 1.067295 TGCCATGTCTCCAGAAAGGT 58.933 50.000 0.00 0.00 39.02 3.50
2976 6099 1.003580 TGCCATGTCTCCAGAAAGGTC 59.996 52.381 0.00 0.00 39.02 3.85
2977 6100 1.280421 GCCATGTCTCCAGAAAGGTCT 59.720 52.381 0.00 0.00 39.02 3.85
2978 6101 2.290577 GCCATGTCTCCAGAAAGGTCTT 60.291 50.000 0.00 0.00 39.02 3.01
2979 6102 3.341823 CCATGTCTCCAGAAAGGTCTTG 58.658 50.000 0.00 0.00 39.02 3.02
2980 6103 2.550830 TGTCTCCAGAAAGGTCTTGC 57.449 50.000 0.00 0.00 39.02 4.01
2981 6104 1.072331 TGTCTCCAGAAAGGTCTTGCC 59.928 52.381 0.00 0.00 39.02 4.52
2996 6119 4.000325 GTCTTGCCTCTTCTTCTTCTTCC 59.000 47.826 0.00 0.00 0.00 3.46
2998 6121 3.409026 TGCCTCTTCTTCTTCTTCCAC 57.591 47.619 0.00 0.00 0.00 4.02
3045 6168 3.217626 CTTCAAGGTGAATAGGGCCATC 58.782 50.000 6.18 1.10 35.59 3.51
3065 6188 2.705658 TCGCACCAATTCAGGGATAGAT 59.294 45.455 0.00 0.00 0.00 1.98
3081 6204 4.651962 GGATAGATCCATACCTTCCCTAGC 59.348 50.000 3.54 0.00 46.38 3.42
3147 6270 1.276421 CTGTCAGGGAAGTCGTGGAAT 59.724 52.381 0.00 0.00 32.53 3.01
3157 6280 6.383147 AGGGAAGTCGTGGAATATAAGAGAAA 59.617 38.462 0.00 0.00 0.00 2.52
3158 6281 6.702282 GGGAAGTCGTGGAATATAAGAGAAAG 59.298 42.308 0.00 0.00 0.00 2.62
3241 6376 5.326069 AGCTGTAGGATACACATAGGTAGG 58.674 45.833 0.00 0.00 46.14 3.18
3261 6396 6.014156 GGTAGGCAGACATATAACAAGGATCT 60.014 42.308 0.00 0.00 0.00 2.75
3274 6409 1.399714 AGGATCTGCGGACGTATTCA 58.600 50.000 0.00 0.00 0.00 2.57
3306 6441 8.997621 ATATACATGTACATTGTCCCGTATTC 57.002 34.615 7.96 0.00 0.00 1.75
3307 6442 5.092554 ACATGTACATTGTCCCGTATTCA 57.907 39.130 5.37 0.00 0.00 2.57
3365 6500 1.948834 TCTGTCCAAACATGTGCACAG 59.051 47.619 25.84 18.42 34.13 3.66
3392 6527 0.454452 CGCAGATCGACGACAACAGA 60.454 55.000 0.00 0.00 41.67 3.41
3455 6606 6.572519 AGCTAGTTCAGATCAAGTTCATCTC 58.427 40.000 0.00 0.00 0.00 2.75
3475 6626 7.879677 TCATCTCTTCTAAAGATCAACTTGCAA 59.120 33.333 0.00 0.00 38.98 4.08
3485 6636 6.585695 AGATCAACTTGCAAACATCTTCAT 57.414 33.333 0.00 0.00 0.00 2.57
3498 6649 3.385755 ACATCTTCATAAAGCCATTGCCC 59.614 43.478 0.00 0.00 38.69 5.36
3499 6650 3.098774 TCTTCATAAAGCCATTGCCCA 57.901 42.857 0.00 0.00 38.69 5.36
3501 6652 4.032310 TCTTCATAAAGCCATTGCCCATT 58.968 39.130 0.00 0.00 38.69 3.16
3502 6653 5.207354 TCTTCATAAAGCCATTGCCCATTA 58.793 37.500 0.00 0.00 38.69 1.90
3503 6654 4.935352 TCATAAAGCCATTGCCCATTAC 57.065 40.909 0.00 0.00 38.69 1.89
3508 6659 1.832998 AGCCATTGCCCATTACCTTTG 59.167 47.619 0.00 0.00 38.69 2.77
3509 6660 1.554617 GCCATTGCCCATTACCTTTGT 59.445 47.619 0.00 0.00 0.00 2.83
3515 6666 3.838565 TGCCCATTACCTTTGTTTGAGA 58.161 40.909 0.00 0.00 0.00 3.27
3531 6682 2.441410 TGAGATTTGCCGGCACAATAA 58.559 42.857 32.95 22.02 0.00 1.40
3574 6725 0.606604 TTGAGGGAGCGTGTTAGACC 59.393 55.000 0.00 0.00 0.00 3.85
3576 6727 1.005097 TGAGGGAGCGTGTTAGACCTA 59.995 52.381 0.00 0.00 0.00 3.08
3581 6732 3.252944 GGGAGCGTGTTAGACCTAGTATC 59.747 52.174 0.00 0.00 0.00 2.24
3588 6739 7.603404 AGCGTGTTAGACCTAGTATCTATACTG 59.397 40.741 11.99 0.52 43.10 2.74
3597 6748 8.937207 ACCTAGTATCTATACTGGTTTGTAGG 57.063 38.462 11.99 10.70 43.10 3.18
3614 6765 5.082633 TGTAGGTTCTGGCATATACCCTA 57.917 43.478 8.63 2.86 0.00 3.53
3658 6809 1.533625 AATACATGTGCAACGCCACT 58.466 45.000 9.11 0.00 42.39 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.866601 TGTCGTGTGCTCTTGTTCATG 59.133 47.619 0.00 0.00 0.00 3.07
24 25 3.116079 ACGGGAACAACTAAATGTCGT 57.884 42.857 0.00 0.00 31.81 4.34
42 43 5.291128 GGAGTTCACATCCATTACAAGTACG 59.709 44.000 0.00 0.00 36.79 3.67
43 44 6.170506 TGGAGTTCACATCCATTACAAGTAC 58.829 40.000 0.00 0.00 41.96 2.73
44 45 6.367374 TGGAGTTCACATCCATTACAAGTA 57.633 37.500 0.00 0.00 41.96 2.24
45 46 5.241403 TGGAGTTCACATCCATTACAAGT 57.759 39.130 0.00 0.00 41.96 3.16
46 47 6.764308 ATTGGAGTTCACATCCATTACAAG 57.236 37.500 0.00 0.00 46.06 3.16
47 48 7.148323 CGTTATTGGAGTTCACATCCATTACAA 60.148 37.037 0.00 0.00 46.06 2.41
48 49 6.315144 CGTTATTGGAGTTCACATCCATTACA 59.685 38.462 0.00 0.00 46.06 2.41
49 50 6.315393 ACGTTATTGGAGTTCACATCCATTAC 59.685 38.462 0.00 0.00 46.06 1.89
51 52 5.253330 ACGTTATTGGAGTTCACATCCATT 58.747 37.500 0.00 0.00 46.06 3.16
52 53 4.843728 ACGTTATTGGAGTTCACATCCAT 58.156 39.130 0.00 0.00 46.06 3.41
53 54 4.280436 ACGTTATTGGAGTTCACATCCA 57.720 40.909 0.00 0.00 45.15 3.41
54 55 5.416947 ACTACGTTATTGGAGTTCACATCC 58.583 41.667 0.00 0.00 37.35 3.51
55 56 7.758528 AGTTACTACGTTATTGGAGTTCACATC 59.241 37.037 0.00 0.00 0.00 3.06
56 57 7.544566 CAGTTACTACGTTATTGGAGTTCACAT 59.455 37.037 0.00 0.00 0.00 3.21
57 58 6.864685 CAGTTACTACGTTATTGGAGTTCACA 59.135 38.462 0.00 0.00 0.00 3.58
58 59 6.865205 ACAGTTACTACGTTATTGGAGTTCAC 59.135 38.462 0.00 0.00 0.00 3.18
59 60 6.985117 ACAGTTACTACGTTATTGGAGTTCA 58.015 36.000 0.00 0.00 0.00 3.18
60 61 7.217070 CGTACAGTTACTACGTTATTGGAGTTC 59.783 40.741 0.00 0.00 33.74 3.01
61 62 7.023575 CGTACAGTTACTACGTTATTGGAGTT 58.976 38.462 0.00 0.00 33.74 3.01
62 63 6.149474 ACGTACAGTTACTACGTTATTGGAGT 59.851 38.462 7.41 0.00 46.15 3.85
63 64 6.546395 ACGTACAGTTACTACGTTATTGGAG 58.454 40.000 7.41 0.00 46.15 3.86
64 65 6.494893 ACGTACAGTTACTACGTTATTGGA 57.505 37.500 7.41 0.00 46.15 3.53
74 75 6.510157 GCATAAGCGTAGACGTACAGTTACTA 60.510 42.308 3.73 0.00 42.22 1.82
116 117 7.838696 TCATGGACCATGTTAACATATTTCCTT 59.161 33.333 29.44 22.03 41.98 3.36
118 119 7.581213 TCATGGACCATGTTAACATATTTCC 57.419 36.000 29.44 22.29 41.98 3.13
124 125 6.267471 ACTGTTTTCATGGACCATGTTAACAT 59.733 34.615 32.72 25.44 40.83 2.71
171 175 1.623359 TTTCACTGTTTGCGTTGCAC 58.377 45.000 0.00 0.00 38.71 4.57
177 181 5.117592 GGAATCAGATTTTTCACTGTTTGCG 59.882 40.000 0.00 0.00 35.84 4.85
178 182 5.117592 CGGAATCAGATTTTTCACTGTTTGC 59.882 40.000 0.00 0.00 35.84 3.68
179 183 5.117592 GCGGAATCAGATTTTTCACTGTTTG 59.882 40.000 0.00 0.00 35.84 2.93
180 184 5.222631 GCGGAATCAGATTTTTCACTGTTT 58.777 37.500 0.00 0.00 35.84 2.83
181 185 4.613622 CGCGGAATCAGATTTTTCACTGTT 60.614 41.667 0.00 0.00 35.84 3.16
182 186 3.120199 CGCGGAATCAGATTTTTCACTGT 60.120 43.478 0.00 0.00 35.84 3.55
183 187 3.419915 CGCGGAATCAGATTTTTCACTG 58.580 45.455 0.00 0.00 35.72 3.66
184 188 2.159517 GCGCGGAATCAGATTTTTCACT 60.160 45.455 8.83 0.00 0.00 3.41
185 189 2.177173 GCGCGGAATCAGATTTTTCAC 58.823 47.619 8.83 0.00 0.00 3.18
186 190 1.132262 GGCGCGGAATCAGATTTTTCA 59.868 47.619 8.83 0.00 0.00 2.69
187 191 1.401905 AGGCGCGGAATCAGATTTTTC 59.598 47.619 8.83 0.00 0.00 2.29
188 192 1.133025 CAGGCGCGGAATCAGATTTTT 59.867 47.619 8.83 0.00 0.00 1.94
202 206 4.211374 ACATATTTTACGAGATTCAGGCGC 59.789 41.667 0.00 0.00 0.00 6.53
203 207 5.462068 TCACATATTTTACGAGATTCAGGCG 59.538 40.000 0.00 0.00 0.00 5.52
204 208 6.480320 AGTCACATATTTTACGAGATTCAGGC 59.520 38.462 0.00 0.00 0.00 4.85
205 209 7.517417 GCAGTCACATATTTTACGAGATTCAGG 60.517 40.741 0.00 0.00 0.00 3.86
206 210 7.340699 GCAGTCACATATTTTACGAGATTCAG 58.659 38.462 0.00 0.00 0.00 3.02
229 233 2.335011 CGTCTGACCTGTGACGCA 59.665 61.111 1.55 0.00 46.94 5.24
264 268 6.803807 CCTGTAGTAGTTTTCCGTAAGTGTAC 59.196 42.308 0.00 0.00 0.00 2.90
265 269 6.570378 GCCTGTAGTAGTTTTCCGTAAGTGTA 60.570 42.308 0.00 0.00 0.00 2.90
266 270 5.776744 CCTGTAGTAGTTTTCCGTAAGTGT 58.223 41.667 0.00 0.00 0.00 3.55
267 271 4.624452 GCCTGTAGTAGTTTTCCGTAAGTG 59.376 45.833 0.00 0.00 0.00 3.16
268 272 4.525874 AGCCTGTAGTAGTTTTCCGTAAGT 59.474 41.667 0.00 0.00 0.00 2.24
269 273 4.863131 CAGCCTGTAGTAGTTTTCCGTAAG 59.137 45.833 0.00 0.00 0.00 2.34
270 274 4.322198 CCAGCCTGTAGTAGTTTTCCGTAA 60.322 45.833 0.00 0.00 0.00 3.18
271 275 3.194116 CCAGCCTGTAGTAGTTTTCCGTA 59.806 47.826 0.00 0.00 0.00 4.02
272 276 2.028385 CCAGCCTGTAGTAGTTTTCCGT 60.028 50.000 0.00 0.00 0.00 4.69
273 277 2.028385 ACCAGCCTGTAGTAGTTTTCCG 60.028 50.000 0.00 0.00 0.00 4.30
274 278 3.697619 ACCAGCCTGTAGTAGTTTTCC 57.302 47.619 0.00 0.00 0.00 3.13
275 279 4.895961 AGAACCAGCCTGTAGTAGTTTTC 58.104 43.478 0.00 0.00 0.00 2.29
276 280 4.976540 AGAACCAGCCTGTAGTAGTTTT 57.023 40.909 0.00 0.00 0.00 2.43
277 281 4.082354 CGTAGAACCAGCCTGTAGTAGTTT 60.082 45.833 0.00 0.00 0.00 2.66
278 282 3.442977 CGTAGAACCAGCCTGTAGTAGTT 59.557 47.826 0.00 0.00 0.00 2.24
279 283 3.015327 CGTAGAACCAGCCTGTAGTAGT 58.985 50.000 0.00 0.00 0.00 2.73
280 284 2.358267 CCGTAGAACCAGCCTGTAGTAG 59.642 54.545 0.00 0.00 0.00 2.57
281 285 2.025981 TCCGTAGAACCAGCCTGTAGTA 60.026 50.000 0.00 0.00 0.00 1.82
282 286 1.183549 CCGTAGAACCAGCCTGTAGT 58.816 55.000 0.00 0.00 0.00 2.73
283 287 1.134560 GTCCGTAGAACCAGCCTGTAG 59.865 57.143 0.00 0.00 0.00 2.74
284 288 1.180029 GTCCGTAGAACCAGCCTGTA 58.820 55.000 0.00 0.00 0.00 2.74
285 289 1.874345 CGTCCGTAGAACCAGCCTGT 61.874 60.000 0.00 0.00 0.00 4.00
286 290 1.153823 CGTCCGTAGAACCAGCCTG 60.154 63.158 0.00 0.00 0.00 4.85
287 291 2.348888 CCGTCCGTAGAACCAGCCT 61.349 63.158 0.00 0.00 0.00 4.58
288 292 1.673808 ATCCGTCCGTAGAACCAGCC 61.674 60.000 0.00 0.00 0.00 4.85
289 293 0.175073 AATCCGTCCGTAGAACCAGC 59.825 55.000 0.00 0.00 0.00 4.85
290 294 2.268298 CAAATCCGTCCGTAGAACCAG 58.732 52.381 0.00 0.00 0.00 4.00
291 295 1.619827 ACAAATCCGTCCGTAGAACCA 59.380 47.619 0.00 0.00 0.00 3.67
292 296 2.265683 GACAAATCCGTCCGTAGAACC 58.734 52.381 0.00 0.00 0.00 3.62
293 297 2.265683 GGACAAATCCGTCCGTAGAAC 58.734 52.381 0.00 0.00 45.77 3.01
294 298 2.660189 GGACAAATCCGTCCGTAGAA 57.340 50.000 0.00 0.00 45.77 2.10
304 308 2.678190 CGGTGGAGAGAAGGACAAATCC 60.678 54.545 0.00 0.00 46.69 3.01
305 309 2.028020 ACGGTGGAGAGAAGGACAAATC 60.028 50.000 0.00 0.00 0.00 2.17
306 310 1.978580 ACGGTGGAGAGAAGGACAAAT 59.021 47.619 0.00 0.00 0.00 2.32
307 311 1.420430 ACGGTGGAGAGAAGGACAAA 58.580 50.000 0.00 0.00 0.00 2.83
308 312 2.168496 CTACGGTGGAGAGAAGGACAA 58.832 52.381 0.00 0.00 0.00 3.18
309 313 1.353358 TCTACGGTGGAGAGAAGGACA 59.647 52.381 0.00 0.00 0.00 4.02
310 314 2.125773 TCTACGGTGGAGAGAAGGAC 57.874 55.000 0.00 0.00 0.00 3.85
311 315 3.053544 AGAATCTACGGTGGAGAGAAGGA 60.054 47.826 0.00 0.00 0.00 3.36
312 316 3.292460 AGAATCTACGGTGGAGAGAAGG 58.708 50.000 0.00 0.00 0.00 3.46
313 317 3.316868 GGAGAATCTACGGTGGAGAGAAG 59.683 52.174 0.00 0.00 33.73 2.85
314 318 3.053544 AGGAGAATCTACGGTGGAGAGAA 60.054 47.826 0.00 0.00 33.73 2.87
315 319 2.510382 AGGAGAATCTACGGTGGAGAGA 59.490 50.000 0.00 0.00 33.73 3.10
316 320 2.882137 GAGGAGAATCTACGGTGGAGAG 59.118 54.545 0.00 0.00 33.73 3.20
317 321 2.423088 GGAGGAGAATCTACGGTGGAGA 60.423 54.545 0.00 0.00 33.73 3.71
318 322 1.957877 GGAGGAGAATCTACGGTGGAG 59.042 57.143 0.00 0.00 33.73 3.86
319 323 1.569548 AGGAGGAGAATCTACGGTGGA 59.430 52.381 0.00 0.00 33.73 4.02
320 324 1.957877 GAGGAGGAGAATCTACGGTGG 59.042 57.143 0.00 0.00 33.73 4.61
321 325 1.604755 CGAGGAGGAGAATCTACGGTG 59.395 57.143 0.00 0.00 33.73 4.94
322 326 1.212441 ACGAGGAGGAGAATCTACGGT 59.788 52.381 0.00 0.00 33.73 4.83
323 327 1.604755 CACGAGGAGGAGAATCTACGG 59.395 57.143 0.00 0.00 33.73 4.02
324 328 2.562635 TCACGAGGAGGAGAATCTACG 58.437 52.381 0.00 0.00 33.73 3.51
325 329 5.523438 AAATCACGAGGAGGAGAATCTAC 57.477 43.478 0.00 0.00 33.73 2.59
326 330 7.342284 AGTTAAAATCACGAGGAGGAGAATCTA 59.658 37.037 0.00 0.00 33.73 1.98
327 331 6.155393 AGTTAAAATCACGAGGAGGAGAATCT 59.845 38.462 0.00 0.00 33.73 2.40
328 332 6.256757 CAGTTAAAATCACGAGGAGGAGAATC 59.743 42.308 0.00 0.00 0.00 2.52
329 333 6.070767 TCAGTTAAAATCACGAGGAGGAGAAT 60.071 38.462 0.00 0.00 0.00 2.40
330 334 5.245301 TCAGTTAAAATCACGAGGAGGAGAA 59.755 40.000 0.00 0.00 0.00 2.87
331 335 4.770531 TCAGTTAAAATCACGAGGAGGAGA 59.229 41.667 0.00 0.00 0.00 3.71
332 336 4.865365 GTCAGTTAAAATCACGAGGAGGAG 59.135 45.833 0.00 0.00 0.00 3.69
333 337 4.322499 GGTCAGTTAAAATCACGAGGAGGA 60.322 45.833 0.00 0.00 0.00 3.71
334 338 3.933332 GGTCAGTTAAAATCACGAGGAGG 59.067 47.826 0.00 0.00 0.00 4.30
335 339 3.933332 GGGTCAGTTAAAATCACGAGGAG 59.067 47.826 0.00 0.00 0.00 3.69
336 340 3.307199 GGGGTCAGTTAAAATCACGAGGA 60.307 47.826 0.00 0.00 0.00 3.71
337 341 3.007635 GGGGTCAGTTAAAATCACGAGG 58.992 50.000 0.00 0.00 0.00 4.63
338 342 3.435671 GTGGGGTCAGTTAAAATCACGAG 59.564 47.826 0.00 0.00 0.00 4.18
339 343 3.071892 AGTGGGGTCAGTTAAAATCACGA 59.928 43.478 0.00 0.00 0.00 4.35
340 344 3.408634 AGTGGGGTCAGTTAAAATCACG 58.591 45.455 0.00 0.00 0.00 4.35
341 345 4.217767 GGAAGTGGGGTCAGTTAAAATCAC 59.782 45.833 0.00 0.00 36.73 3.06
342 346 4.105697 AGGAAGTGGGGTCAGTTAAAATCA 59.894 41.667 0.00 0.00 36.73 2.57
343 347 4.459337 CAGGAAGTGGGGTCAGTTAAAATC 59.541 45.833 0.00 0.00 36.73 2.17
344 348 4.105697 TCAGGAAGTGGGGTCAGTTAAAAT 59.894 41.667 0.00 0.00 36.73 1.82
345 349 3.460340 TCAGGAAGTGGGGTCAGTTAAAA 59.540 43.478 0.00 0.00 36.73 1.52
346 350 3.050089 TCAGGAAGTGGGGTCAGTTAAA 58.950 45.455 0.00 0.00 36.73 1.52
347 351 2.696775 TCAGGAAGTGGGGTCAGTTAA 58.303 47.619 0.00 0.00 36.73 2.01
348 352 2.409064 TCAGGAAGTGGGGTCAGTTA 57.591 50.000 0.00 0.00 36.73 2.24
349 353 1.747444 ATCAGGAAGTGGGGTCAGTT 58.253 50.000 0.00 0.00 39.09 3.16
350 354 1.747444 AATCAGGAAGTGGGGTCAGT 58.253 50.000 0.00 0.00 0.00 3.41
351 355 2.887151 AAATCAGGAAGTGGGGTCAG 57.113 50.000 0.00 0.00 0.00 3.51
352 356 4.733077 TTAAAATCAGGAAGTGGGGTCA 57.267 40.909 0.00 0.00 0.00 4.02
353 357 5.105351 CCAATTAAAATCAGGAAGTGGGGTC 60.105 44.000 0.00 0.00 35.26 4.46
354 358 4.777366 CCAATTAAAATCAGGAAGTGGGGT 59.223 41.667 0.00 0.00 35.26 4.95
355 359 5.343307 CCAATTAAAATCAGGAAGTGGGG 57.657 43.478 0.00 0.00 35.26 4.96
357 361 4.383010 GGCCCAATTAAAATCAGGAAGTGG 60.383 45.833 0.00 0.00 37.91 4.00
358 362 4.222588 TGGCCCAATTAAAATCAGGAAGTG 59.777 41.667 0.00 0.00 0.00 3.16
359 363 4.424842 TGGCCCAATTAAAATCAGGAAGT 58.575 39.130 0.00 0.00 0.00 3.01
360 364 5.178061 GTTGGCCCAATTAAAATCAGGAAG 58.822 41.667 0.00 0.00 0.00 3.46
361 365 4.594920 TGTTGGCCCAATTAAAATCAGGAA 59.405 37.500 0.00 0.00 0.00 3.36
362 366 4.163427 TGTTGGCCCAATTAAAATCAGGA 58.837 39.130 0.00 0.00 0.00 3.86
363 367 4.550076 TGTTGGCCCAATTAAAATCAGG 57.450 40.909 0.00 0.00 0.00 3.86
364 368 5.732633 TGATGTTGGCCCAATTAAAATCAG 58.267 37.500 0.00 0.00 0.00 2.90
365 369 5.732633 CTGATGTTGGCCCAATTAAAATCA 58.267 37.500 0.00 2.69 0.00 2.57
366 370 4.571984 GCTGATGTTGGCCCAATTAAAATC 59.428 41.667 0.00 0.00 0.00 2.17
367 371 4.516323 GCTGATGTTGGCCCAATTAAAAT 58.484 39.130 0.00 0.00 0.00 1.82
368 372 3.307339 GGCTGATGTTGGCCCAATTAAAA 60.307 43.478 0.00 0.00 42.30 1.52
369 373 2.235898 GGCTGATGTTGGCCCAATTAAA 59.764 45.455 0.00 0.00 42.30 1.52
370 374 1.830477 GGCTGATGTTGGCCCAATTAA 59.170 47.619 0.00 0.00 42.30 1.40
371 375 1.484038 GGCTGATGTTGGCCCAATTA 58.516 50.000 0.00 0.00 42.30 1.40
372 376 2.289840 GGCTGATGTTGGCCCAATT 58.710 52.632 0.00 0.00 42.30 2.32
373 377 4.039042 GGCTGATGTTGGCCCAAT 57.961 55.556 0.00 0.00 42.30 3.16
377 381 1.377987 TTACGGGCTGATGTTGGCC 60.378 57.895 0.00 0.00 46.89 5.36
378 382 1.654023 GGTTACGGGCTGATGTTGGC 61.654 60.000 0.00 0.00 0.00 4.52
379 383 0.035439 AGGTTACGGGCTGATGTTGG 60.035 55.000 0.00 0.00 0.00 3.77
380 384 1.369625 GAGGTTACGGGCTGATGTTG 58.630 55.000 0.00 0.00 0.00 3.33
381 385 0.252197 GGAGGTTACGGGCTGATGTT 59.748 55.000 0.00 0.00 0.00 2.71
382 386 0.617820 AGGAGGTTACGGGCTGATGT 60.618 55.000 0.00 0.00 0.00 3.06
383 387 0.179073 CAGGAGGTTACGGGCTGATG 60.179 60.000 0.00 0.00 0.00 3.07
384 388 0.617820 ACAGGAGGTTACGGGCTGAT 60.618 55.000 0.00 0.00 0.00 2.90
385 389 1.229082 ACAGGAGGTTACGGGCTGA 60.229 57.895 0.00 0.00 0.00 4.26
386 390 1.218316 GACAGGAGGTTACGGGCTG 59.782 63.158 0.00 0.00 0.00 4.85
387 391 1.078710 AGACAGGAGGTTACGGGCT 59.921 57.895 0.00 0.00 0.00 5.19
388 392 1.218316 CAGACAGGAGGTTACGGGC 59.782 63.158 0.00 0.00 0.00 6.13
389 393 1.749634 CTACAGACAGGAGGTTACGGG 59.250 57.143 0.00 0.00 0.00 5.28
390 394 2.444421 ACTACAGACAGGAGGTTACGG 58.556 52.381 0.00 0.00 0.00 4.02
391 395 5.831702 ATTACTACAGACAGGAGGTTACG 57.168 43.478 0.00 0.00 0.00 3.18
392 396 7.407393 AGAATTACTACAGACAGGAGGTTAC 57.593 40.000 0.00 0.00 0.00 2.50
393 397 6.606395 GGAGAATTACTACAGACAGGAGGTTA 59.394 42.308 0.00 0.00 0.00 2.85
394 398 5.422650 GGAGAATTACTACAGACAGGAGGTT 59.577 44.000 0.00 0.00 0.00 3.50
395 399 4.957327 GGAGAATTACTACAGACAGGAGGT 59.043 45.833 0.00 0.00 0.00 3.85
396 400 4.956700 TGGAGAATTACTACAGACAGGAGG 59.043 45.833 0.00 0.00 34.04 4.30
397 401 5.654650 AGTGGAGAATTACTACAGACAGGAG 59.345 44.000 0.00 0.00 40.52 3.69
398 402 5.580998 AGTGGAGAATTACTACAGACAGGA 58.419 41.667 0.00 0.00 40.52 3.86
399 403 5.923733 AGTGGAGAATTACTACAGACAGG 57.076 43.478 0.00 0.00 40.52 4.00
400 404 6.925211 TGAAGTGGAGAATTACTACAGACAG 58.075 40.000 0.00 0.00 40.52 3.51
401 405 6.719829 TCTGAAGTGGAGAATTACTACAGACA 59.280 38.462 0.00 0.00 40.52 3.41
402 406 7.159322 TCTGAAGTGGAGAATTACTACAGAC 57.841 40.000 0.00 0.00 40.52 3.51
403 407 7.962995 ATCTGAAGTGGAGAATTACTACAGA 57.037 36.000 0.00 0.00 40.52 3.41
406 410 8.983724 GCAATATCTGAAGTGGAGAATTACTAC 58.016 37.037 0.00 0.00 0.00 2.73
407 411 8.704668 TGCAATATCTGAAGTGGAGAATTACTA 58.295 33.333 0.00 0.00 0.00 1.82
408 412 7.497249 GTGCAATATCTGAAGTGGAGAATTACT 59.503 37.037 0.00 0.00 0.00 2.24
409 413 7.280876 TGTGCAATATCTGAAGTGGAGAATTAC 59.719 37.037 0.00 0.00 0.00 1.89
410 414 7.337938 TGTGCAATATCTGAAGTGGAGAATTA 58.662 34.615 0.00 0.00 0.00 1.40
411 415 6.182627 TGTGCAATATCTGAAGTGGAGAATT 58.817 36.000 0.00 0.00 0.00 2.17
412 416 5.748402 TGTGCAATATCTGAAGTGGAGAAT 58.252 37.500 0.00 0.00 0.00 2.40
413 417 5.164620 TGTGCAATATCTGAAGTGGAGAA 57.835 39.130 0.00 0.00 0.00 2.87
414 418 4.763073 CTGTGCAATATCTGAAGTGGAGA 58.237 43.478 0.00 0.00 0.00 3.71
415 419 3.311871 GCTGTGCAATATCTGAAGTGGAG 59.688 47.826 0.00 0.00 0.00 3.86
468 472 1.641192 GGGGTGATCCTCCTCCTTTTT 59.359 52.381 4.44 0.00 35.33 1.94
498 502 2.304069 TGGCATCTCCATCTGCACT 58.696 52.632 0.00 0.00 40.72 4.40
539 543 3.113386 CTCTGGAGTCGATCGCGCA 62.113 63.158 11.09 0.00 37.46 6.09
552 556 3.829601 ACTACTCTGTTCTGTTCCTCTGG 59.170 47.826 0.00 0.00 0.00 3.86
560 564 3.194542 GGATGCAGACTACTCTGTTCTGT 59.805 47.826 0.00 0.00 45.30 3.41
562 566 3.446873 CAGGATGCAGACTACTCTGTTCT 59.553 47.826 0.00 0.00 45.30 3.01
570 574 3.488384 CGTCTTCTCAGGATGCAGACTAC 60.488 52.174 0.00 0.00 36.10 2.73
599 603 3.119029 CGAGAGGGGTACAAAATCGGTTA 60.119 47.826 0.00 0.00 0.00 2.85
610 614 1.066430 TGTTTGCATCGAGAGGGGTAC 60.066 52.381 0.00 0.00 0.00 3.34
634 639 2.625314 TCCACGATGATCATCTCAGGTC 59.375 50.000 28.48 7.09 37.28 3.85
695 700 3.066190 TGTACGCAGGAGACCCGG 61.066 66.667 0.00 0.00 37.58 5.73
699 704 0.454620 CTCACGTGTACGCAGGAGAC 60.455 60.000 16.51 0.00 44.43 3.36
724 733 3.432782 CGTGGTCCTTCATAAGTCGTAC 58.567 50.000 0.00 0.00 0.00 3.67
750 762 2.734606 CGACGCTGGTTTTAATGTCTGA 59.265 45.455 0.00 0.00 0.00 3.27
753 765 1.465187 GGCGACGCTGGTTTTAATGTC 60.465 52.381 20.77 0.00 0.00 3.06
754 766 0.519961 GGCGACGCTGGTTTTAATGT 59.480 50.000 20.77 0.00 0.00 2.71
755 767 3.306206 GGCGACGCTGGTTTTAATG 57.694 52.632 20.77 0.00 0.00 1.90
784 796 0.621571 TTGAGCTCATGGTAGGCCCT 60.622 55.000 19.04 0.00 0.00 5.19
808 820 3.385755 CCATTCCATTTCCTGGTTCATCC 59.614 47.826 0.00 0.00 46.08 3.51
818 830 4.871933 ACTTCACAACCATTCCATTTCC 57.128 40.909 0.00 0.00 0.00 3.13
819 831 8.281212 AGTATACTTCACAACCATTCCATTTC 57.719 34.615 0.00 0.00 0.00 2.17
820 832 9.396022 CTAGTATACTTCACAACCATTCCATTT 57.604 33.333 11.40 0.00 0.00 2.32
821 833 7.499232 GCTAGTATACTTCACAACCATTCCATT 59.501 37.037 11.40 0.00 0.00 3.16
822 834 6.992715 GCTAGTATACTTCACAACCATTCCAT 59.007 38.462 11.40 0.00 0.00 3.41
823 835 6.346096 GCTAGTATACTTCACAACCATTCCA 58.654 40.000 11.40 0.00 0.00 3.53
840 852 4.280494 CCACCGCGCGGCTAGTAT 62.280 66.667 46.22 25.47 39.32 2.12
847 859 4.564116 CTACCTACCACCGCGCGG 62.564 72.222 44.88 44.88 42.03 6.46
878 890 5.820423 GCCTGTGTATTTATGTGTATGGACA 59.180 40.000 0.00 0.00 0.00 4.02
986 998 0.393537 GTCCATGCCTGACTCTTGGG 60.394 60.000 0.00 0.00 31.75 4.12
987 999 0.325933 TGTCCATGCCTGACTCTTGG 59.674 55.000 2.85 0.00 33.83 3.61
988 1000 1.446907 GTGTCCATGCCTGACTCTTG 58.553 55.000 2.85 0.00 33.83 3.02
1039 1051 4.175337 CGTGACGGGGATGGCCAT 62.175 66.667 20.96 20.96 35.15 4.40
1389 1401 0.170561 GCGTGAAGAGCTCGAGGTTA 59.829 55.000 19.66 3.26 35.64 2.85
1530 4069 0.725784 GCGTGATGTTGTTGAAGCCG 60.726 55.000 0.00 0.00 0.00 5.52
1635 4174 2.920964 CGACGCGCCGATCTTGATG 61.921 63.158 9.96 0.00 0.00 3.07
1894 4433 5.523188 GGCGGCATTAATTCAATTCAATTGA 59.477 36.000 8.85 8.85 46.77 2.57
1896 4435 5.426504 TGGCGGCATTAATTCAATTCAATT 58.573 33.333 7.97 0.00 0.00 2.32
1897 4436 5.021033 TGGCGGCATTAATTCAATTCAAT 57.979 34.783 7.97 0.00 0.00 2.57
1900 4439 4.448732 GGAATGGCGGCATTAATTCAATTC 59.551 41.667 33.90 19.95 31.92 2.17
1932 4475 3.603532 TCACGTCGGTCTAGTGATTACT 58.396 45.455 0.00 0.00 39.63 2.24
1938 4481 2.421073 TGGTTATCACGTCGGTCTAGTG 59.579 50.000 0.00 0.00 37.24 2.74
1940 4483 3.062323 GTGGTTATCACGTCGGTCTAG 57.938 52.381 0.00 0.00 36.56 2.43
1951 4494 4.359434 TGCTTTGGTGTAGTGGTTATCA 57.641 40.909 0.00 0.00 0.00 2.15
1952 4495 5.458015 GTTTGCTTTGGTGTAGTGGTTATC 58.542 41.667 0.00 0.00 0.00 1.75
1953 4496 4.279922 GGTTTGCTTTGGTGTAGTGGTTAT 59.720 41.667 0.00 0.00 0.00 1.89
1970 4513 9.233232 CAATAATACGGAATAGAAAAGGTTTGC 57.767 33.333 0.00 0.00 0.00 3.68
1976 4519 7.001922 CGCGACAATAATACGGAATAGAAAAG 58.998 38.462 0.00 0.00 0.00 2.27
1981 4524 6.627690 AATCGCGACAATAATACGGAATAG 57.372 37.500 12.93 0.00 0.00 1.73
1984 4527 4.804665 TCAAATCGCGACAATAATACGGAA 59.195 37.500 12.93 0.00 0.00 4.30
1986 4529 4.702247 TCAAATCGCGACAATAATACGG 57.298 40.909 12.93 0.00 0.00 4.02
1987 4530 6.843779 TCAAATCAAATCGCGACAATAATACG 59.156 34.615 12.93 0.00 0.00 3.06
1988 4531 8.713765 ATCAAATCAAATCGCGACAATAATAC 57.286 30.769 12.93 0.00 0.00 1.89
1991 4534 7.247019 TCAATCAAATCAAATCGCGACAATAA 58.753 30.769 12.93 0.00 0.00 1.40
1994 4537 5.040715 TCAATCAAATCAAATCGCGACAA 57.959 34.783 12.93 0.00 0.00 3.18
1996 4539 5.109002 CGAATCAATCAAATCAAATCGCGAC 60.109 40.000 12.93 0.00 0.00 5.19
2015 4654 6.075918 GCACACACATATGAATGATCGAATC 58.924 40.000 10.38 0.00 36.54 2.52
2017 4656 4.874966 TGCACACACATATGAATGATCGAA 59.125 37.500 10.38 0.00 36.54 3.71
2019 4658 4.521010 GTGCACACACATATGAATGATCG 58.479 43.478 13.17 3.35 46.61 3.69
2032 4671 3.059472 CTCGATCGCGTGCACACAC 62.059 63.158 18.64 4.47 43.76 3.82
2033 4672 2.804931 CTCGATCGCGTGCACACA 60.805 61.111 18.64 0.00 38.98 3.72
2040 4679 2.775856 ATGTCCTGCTCGATCGCGT 61.776 57.895 11.09 0.00 38.98 6.01
2041 4680 2.026734 ATGTCCTGCTCGATCGCG 59.973 61.111 11.09 5.24 39.35 5.87
2042 4681 0.319383 ATCATGTCCTGCTCGATCGC 60.319 55.000 11.09 0.00 0.00 4.58
2043 4682 1.000938 TGATCATGTCCTGCTCGATCG 60.001 52.381 9.36 9.36 36.17 3.69
2044 4683 2.402305 GTGATCATGTCCTGCTCGATC 58.598 52.381 0.00 0.00 34.40 3.69
2045 4684 1.069823 GGTGATCATGTCCTGCTCGAT 59.930 52.381 0.00 0.00 0.00 3.59
2046 4685 0.461548 GGTGATCATGTCCTGCTCGA 59.538 55.000 0.00 0.00 0.00 4.04
2140 5205 1.376942 CAGCTCCTCCTGCACCTTG 60.377 63.158 0.00 0.00 0.00 3.61
2228 5293 1.810532 GGAGCGACTCCTTGACGAT 59.189 57.895 15.90 0.00 46.41 3.73
2710 5775 0.610687 CTCTGAACCACCAGGAGTCC 59.389 60.000 0.00 0.00 38.69 3.85
2712 5777 1.694696 GAACTCTGAACCACCAGGAGT 59.305 52.381 0.00 0.00 38.69 3.85
2730 5813 6.636447 CGTCAACACTTAATTTGAAGCATGAA 59.364 34.615 0.00 0.00 33.58 2.57
2785 5871 7.817418 ACAAAATAAATGCATAGGTACCGAT 57.183 32.000 6.18 3.48 0.00 4.18
2786 5872 7.121463 ACAACAAAATAAATGCATAGGTACCGA 59.879 33.333 6.18 0.38 0.00 4.69
2788 5874 8.996024 AACAACAAAATAAATGCATAGGTACC 57.004 30.769 2.73 2.73 0.00 3.34
2922 6045 2.405618 TGGCTATATGCTCTGGTCCT 57.594 50.000 0.00 0.00 42.39 3.85
2959 6082 2.746362 GCAAGACCTTTCTGGAGACATG 59.254 50.000 0.00 0.00 41.51 3.21
2960 6083 2.290577 GGCAAGACCTTTCTGGAGACAT 60.291 50.000 0.00 0.00 39.71 3.06
2961 6084 1.072331 GGCAAGACCTTTCTGGAGACA 59.928 52.381 0.00 0.00 39.71 3.41
2962 6085 1.814793 GGCAAGACCTTTCTGGAGAC 58.185 55.000 0.00 0.00 39.71 3.36
2973 6096 3.694043 AGAAGAAGAAGAGGCAAGACC 57.306 47.619 0.00 0.00 39.61 3.85
2974 6097 4.000325 GGAAGAAGAAGAAGAGGCAAGAC 59.000 47.826 0.00 0.00 0.00 3.01
2975 6098 3.648067 TGGAAGAAGAAGAAGAGGCAAGA 59.352 43.478 0.00 0.00 0.00 3.02
2976 6099 3.750652 GTGGAAGAAGAAGAAGAGGCAAG 59.249 47.826 0.00 0.00 0.00 4.01
2977 6100 3.744660 GTGGAAGAAGAAGAAGAGGCAA 58.255 45.455 0.00 0.00 0.00 4.52
2978 6101 2.289072 CGTGGAAGAAGAAGAAGAGGCA 60.289 50.000 0.00 0.00 0.00 4.75
2979 6102 2.342179 CGTGGAAGAAGAAGAAGAGGC 58.658 52.381 0.00 0.00 0.00 4.70
2980 6103 2.289072 TGCGTGGAAGAAGAAGAAGAGG 60.289 50.000 0.00 0.00 0.00 3.69
2981 6104 3.032017 TGCGTGGAAGAAGAAGAAGAG 57.968 47.619 0.00 0.00 0.00 2.85
2996 6119 1.452110 TTGGAGATGGTGAATGCGTG 58.548 50.000 0.00 0.00 0.00 5.34
2998 6121 1.811965 TGTTTGGAGATGGTGAATGCG 59.188 47.619 0.00 0.00 0.00 4.73
3045 6168 2.620251 TCTATCCCTGAATTGGTGCG 57.380 50.000 0.00 0.00 0.00 5.34
3065 6188 1.343985 TGCAGCTAGGGAAGGTATGGA 60.344 52.381 0.00 0.00 33.59 3.41
3081 6204 4.502016 TCTAGAAGCTGAGTTGATTGCAG 58.498 43.478 0.00 0.00 0.00 4.41
3157 6280 7.060383 TCACTGTTCATCTTCTTCTTCTTCT 57.940 36.000 0.00 0.00 0.00 2.85
3158 6281 7.095271 CCTTCACTGTTCATCTTCTTCTTCTTC 60.095 40.741 0.00 0.00 0.00 2.87
3200 6335 1.608055 CTCCCATTCTGTTGCACACA 58.392 50.000 0.00 0.00 0.00 3.72
3203 6338 0.524862 CAGCTCCCATTCTGTTGCAC 59.475 55.000 0.00 0.00 0.00 4.57
3206 6341 2.237143 TCCTACAGCTCCCATTCTGTTG 59.763 50.000 0.01 0.00 42.81 3.33
3208 6343 2.254152 TCCTACAGCTCCCATTCTGT 57.746 50.000 0.00 0.00 44.76 3.41
3241 6376 5.604010 GCAGATCCTTGTTATATGTCTGC 57.396 43.478 8.45 8.45 46.66 4.26
3261 6396 9.857957 TGTATATTTTATATGAATACGTCCGCA 57.142 29.630 0.00 0.00 0.00 5.69
3292 6427 3.861840 ACTGTCTGAATACGGGACAATG 58.138 45.455 0.00 0.00 39.11 2.82
3336 6471 6.347079 GCACATGTTTGGACAGAAAATGATTG 60.347 38.462 0.00 0.00 39.58 2.67
3365 6500 1.612469 CGTCGATCTGCGCCATGATC 61.612 60.000 18.87 18.87 40.61 2.92
3436 6587 8.994429 TTAGAAGAGATGAACTTGATCTGAAC 57.006 34.615 0.00 0.00 29.97 3.18
3455 6606 8.295288 AGATGTTTGCAAGTTGATCTTTAGAAG 58.705 33.333 7.16 0.00 33.63 2.85
3475 6626 4.141869 GGGCAATGGCTTTATGAAGATGTT 60.142 41.667 6.78 0.00 40.87 2.71
3485 6636 3.396685 AGGTAATGGGCAATGGCTTTA 57.603 42.857 6.78 2.94 40.87 1.85
3498 6649 5.345741 CGGCAAATCTCAAACAAAGGTAATG 59.654 40.000 0.00 0.00 0.00 1.90
3499 6650 5.469479 CGGCAAATCTCAAACAAAGGTAAT 58.531 37.500 0.00 0.00 0.00 1.89
3501 6652 3.254657 CCGGCAAATCTCAAACAAAGGTA 59.745 43.478 0.00 0.00 0.00 3.08
3502 6653 2.035832 CCGGCAAATCTCAAACAAAGGT 59.964 45.455 0.00 0.00 0.00 3.50
3503 6654 2.676076 CCGGCAAATCTCAAACAAAGG 58.324 47.619 0.00 0.00 0.00 3.11
3508 6659 0.313672 TGTGCCGGCAAATCTCAAAC 59.686 50.000 34.66 16.23 0.00 2.93
3509 6660 1.035923 TTGTGCCGGCAAATCTCAAA 58.964 45.000 34.66 6.49 0.00 2.69
3515 6666 2.611722 GGTTGTTATTGTGCCGGCAAAT 60.612 45.455 34.66 30.20 31.63 2.32
3576 6727 8.915036 CAGAACCTACAAACCAGTATAGATACT 58.085 37.037 0.00 0.00 44.03 2.12
3581 6732 5.116882 GCCAGAACCTACAAACCAGTATAG 58.883 45.833 0.00 0.00 0.00 1.31
3588 6739 4.820173 GGTATATGCCAGAACCTACAAACC 59.180 45.833 4.76 0.00 0.00 3.27
3597 6748 9.379791 GTACAAATATAGGGTATATGCCAGAAC 57.620 37.037 12.29 0.00 31.96 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.