Multiple sequence alignment - TraesCS3A01G331500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G331500 chr3A 100.000 1533 0 0 1592 3124 576209546 576211078 0.000000e+00 2832.0
1 TraesCS3A01G331500 chr3A 100.000 1210 0 0 1 1210 576207955 576209164 0.000000e+00 2235.0
2 TraesCS3A01G331500 chr3A 97.450 549 12 1 1 547 7250731 7251279 0.000000e+00 935.0
3 TraesCS3A01G331500 chr3A 91.282 195 16 1 539 733 57085268 57085075 6.640000e-67 265.0
4 TraesCS3A01G331500 chr3A 90.674 193 14 2 541 733 460588343 460588531 1.440000e-63 254.0
5 TraesCS3A01G331500 chr7A 97.985 546 11 0 1 546 155970484 155969939 0.000000e+00 948.0
6 TraesCS3A01G331500 chr3B 97.982 545 11 0 1 545 443350985 443350441 0.000000e+00 946.0
7 TraesCS3A01G331500 chr3B 97.798 545 10 1 1 545 534981664 534982206 0.000000e+00 939.0
8 TraesCS3A01G331500 chr3B 94.872 468 22 2 744 1210 573403475 573403941 0.000000e+00 730.0
9 TraesCS3A01G331500 chr3B 90.877 559 24 12 2315 2859 573404042 573404587 0.000000e+00 725.0
10 TraesCS3A01G331500 chr3B 95.000 40 2 0 1754 1793 256586763 256586802 2.600000e-06 63.9
11 TraesCS3A01G331500 chr5B 97.802 546 10 1 1 546 121689985 121690528 0.000000e+00 941.0
12 TraesCS3A01G331500 chr5B 96.953 558 14 2 1 558 203501374 203500820 0.000000e+00 933.0
13 TraesCS3A01G331500 chr5B 100.000 30 0 0 1754 1783 352488687 352488716 4.350000e-04 56.5
14 TraesCS3A01G331500 chr5A 97.619 546 11 1 1 546 109294752 109294209 0.000000e+00 935.0
15 TraesCS3A01G331500 chr5A 91.192 193 16 1 541 733 553144271 553144080 8.590000e-66 261.0
16 TraesCS3A01G331500 chr5A 83.784 74 6 2 1716 1783 537923009 537922936 7.230000e-07 65.8
17 TraesCS3A01G331500 chr2B 97.615 545 11 1 1 545 74695502 74696044 0.000000e+00 933.0
18 TraesCS3A01G331500 chr2B 100.000 32 0 0 1754 1785 460432009 460431978 3.360000e-05 60.2
19 TraesCS3A01G331500 chr6B 96.942 556 15 1 1 554 247053602 247053047 0.000000e+00 931.0
20 TraesCS3A01G331500 chr6B 100.000 32 0 0 1754 1785 441220521 441220490 3.360000e-05 60.2
21 TraesCS3A01G331500 chr3D 90.688 494 25 9 1781 2272 437967024 437967498 3.400000e-179 638.0
22 TraesCS3A01G331500 chr3D 95.486 288 6 4 2323 2603 437967662 437967949 1.320000e-123 453.0
23 TraesCS3A01G331500 chr3D 95.763 236 10 0 975 1210 437966538 437966773 6.320000e-102 381.0
24 TraesCS3A01G331500 chr3D 89.247 279 16 3 2592 2865 437967969 437968238 1.390000e-88 337.0
25 TraesCS3A01G331500 chr3D 95.973 149 6 0 779 927 437966037 437966185 3.110000e-60 243.0
26 TraesCS3A01G331500 chr3D 92.174 115 7 2 1592 1704 437966911 437967025 8.970000e-36 161.0
27 TraesCS3A01G331500 chr3D 97.826 46 1 0 744 789 437961664 437961709 2.580000e-11 80.5
28 TraesCS3A01G331500 chr1A 91.237 194 15 2 541 733 399234808 399234616 2.390000e-66 263.0
29 TraesCS3A01G331500 chr1A 89.848 197 18 2 539 734 582840426 582840621 5.170000e-63 252.0
30 TraesCS3A01G331500 chr2A 90.722 194 16 2 541 733 762691830 762692022 1.110000e-64 257.0
31 TraesCS3A01G331500 chr4D 90.206 194 17 2 541 733 464142120 464142312 5.170000e-63 252.0
32 TraesCS3A01G331500 chr4D 87.037 54 2 2 1736 1784 214971813 214971866 4.350000e-04 56.5
33 TraesCS3A01G331500 chr6A 89.796 196 18 2 539 733 77775580 77775774 1.860000e-62 250.0
34 TraesCS3A01G331500 chr4A 90.155 193 17 2 541 733 518118311 518118121 1.860000e-62 250.0
35 TraesCS3A01G331500 chr7B 89.888 89 6 3 3027 3114 469466376 469466290 9.160000e-21 111.0
36 TraesCS3A01G331500 chr4B 100.000 32 0 0 1754 1785 357159390 357159359 3.360000e-05 60.2
37 TraesCS3A01G331500 chr4B 87.037 54 2 1 1735 1783 627254960 627254907 4.350000e-04 56.5
38 TraesCS3A01G331500 chr2D 85.455 55 3 2 1736 1785 133774436 133774382 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G331500 chr3A 576207955 576211078 3123 False 2533.500000 2832 100.000000 1 3124 2 chr3A.!!$F3 3123
1 TraesCS3A01G331500 chr3A 7250731 7251279 548 False 935.000000 935 97.450000 1 547 1 chr3A.!!$F1 546
2 TraesCS3A01G331500 chr7A 155969939 155970484 545 True 948.000000 948 97.985000 1 546 1 chr7A.!!$R1 545
3 TraesCS3A01G331500 chr3B 443350441 443350985 544 True 946.000000 946 97.982000 1 545 1 chr3B.!!$R1 544
4 TraesCS3A01G331500 chr3B 534981664 534982206 542 False 939.000000 939 97.798000 1 545 1 chr3B.!!$F2 544
5 TraesCS3A01G331500 chr3B 573403475 573404587 1112 False 727.500000 730 92.874500 744 2859 2 chr3B.!!$F3 2115
6 TraesCS3A01G331500 chr5B 121689985 121690528 543 False 941.000000 941 97.802000 1 546 1 chr5B.!!$F1 545
7 TraesCS3A01G331500 chr5B 203500820 203501374 554 True 933.000000 933 96.953000 1 558 1 chr5B.!!$R1 557
8 TraesCS3A01G331500 chr5A 109294209 109294752 543 True 935.000000 935 97.619000 1 546 1 chr5A.!!$R1 545
9 TraesCS3A01G331500 chr2B 74695502 74696044 542 False 933.000000 933 97.615000 1 545 1 chr2B.!!$F1 544
10 TraesCS3A01G331500 chr6B 247053047 247053602 555 True 931.000000 931 96.942000 1 554 1 chr6B.!!$R1 553
11 TraesCS3A01G331500 chr3D 437966037 437968238 2201 False 368.833333 638 93.221833 779 2865 6 chr3D.!!$F2 2086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 529 0.820074 AATTCGACCCCGTTGCAACA 60.820 50.000 28.01 7.4 37.05 3.33 F
961 964 1.237458 GTATCCCTCCTCCCCTGCT 59.763 63.158 0.00 0.0 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 2018 0.037877 TTTATTTTGGGACGGGCGGA 59.962 50.0 0.00 0.00 0.00 5.54 R
2912 3388 0.036388 CCCTCACCGAAGCTTAAGCA 60.036 55.0 28.39 5.75 45.16 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
330 331 5.308014 AGCTTGTGTGTGTGAAATAGATGA 58.692 37.500 0.00 0.00 0.00 2.92
526 529 0.820074 AATTCGACCCCGTTGCAACA 60.820 50.000 28.01 7.40 37.05 3.33
547 550 3.493503 CACACGGGTGTTCTTCTAGTTTC 59.506 47.826 10.41 0.00 42.83 2.78
551 554 5.577164 CACGGGTGTTCTTCTAGTTTCTATG 59.423 44.000 0.00 0.00 0.00 2.23
554 557 6.973474 CGGGTGTTCTTCTAGTTTCTATGTAG 59.027 42.308 0.00 0.00 0.00 2.74
555 558 7.266400 GGGTGTTCTTCTAGTTTCTATGTAGG 58.734 42.308 0.00 0.00 0.00 3.18
556 559 7.123847 GGGTGTTCTTCTAGTTTCTATGTAGGA 59.876 40.741 0.00 0.00 0.00 2.94
557 560 8.697292 GGTGTTCTTCTAGTTTCTATGTAGGAT 58.303 37.037 0.00 0.00 0.00 3.24
733 736 7.749377 TTTCTATCCTATGAACCAAAGGAGA 57.251 36.000 0.00 0.00 42.53 3.71
734 737 7.749377 TTCTATCCTATGAACCAAAGGAGAA 57.251 36.000 0.00 0.00 42.53 2.87
735 738 7.366847 TCTATCCTATGAACCAAAGGAGAAG 57.633 40.000 0.00 0.00 42.53 2.85
736 739 7.132805 TCTATCCTATGAACCAAAGGAGAAGA 58.867 38.462 0.00 0.00 42.53 2.87
737 740 6.642733 ATCCTATGAACCAAAGGAGAAGAA 57.357 37.500 0.00 0.00 42.53 2.52
738 741 5.805728 TCCTATGAACCAAAGGAGAAGAAC 58.194 41.667 0.00 0.00 34.46 3.01
739 742 4.944317 CCTATGAACCAAAGGAGAAGAACC 59.056 45.833 0.00 0.00 31.64 3.62
740 743 3.943671 TGAACCAAAGGAGAAGAACCA 57.056 42.857 0.00 0.00 0.00 3.67
741 744 4.243793 TGAACCAAAGGAGAAGAACCAA 57.756 40.909 0.00 0.00 0.00 3.67
742 745 4.605183 TGAACCAAAGGAGAAGAACCAAA 58.395 39.130 0.00 0.00 0.00 3.28
743 746 4.644685 TGAACCAAAGGAGAAGAACCAAAG 59.355 41.667 0.00 0.00 0.00 2.77
744 747 3.566351 ACCAAAGGAGAAGAACCAAAGG 58.434 45.455 0.00 0.00 0.00 3.11
745 748 3.204382 ACCAAAGGAGAAGAACCAAAGGA 59.796 43.478 0.00 0.00 0.00 3.36
746 749 3.823304 CCAAAGGAGAAGAACCAAAGGAG 59.177 47.826 0.00 0.00 0.00 3.69
747 750 4.446311 CCAAAGGAGAAGAACCAAAGGAGA 60.446 45.833 0.00 0.00 0.00 3.71
891 894 2.377628 TATTCCATCCGCTCCCGTGC 62.378 60.000 0.00 0.00 0.00 5.34
961 964 1.237458 GTATCCCTCCTCCCCTGCT 59.763 63.158 0.00 0.00 0.00 4.24
1026 1334 2.303163 TGTGGAAATATCGGGTCGTG 57.697 50.000 0.00 0.00 0.00 4.35
1035 1343 3.766691 CGGGTCGTGGGATCGGTT 61.767 66.667 0.00 0.00 0.00 4.44
1044 1352 2.514824 GGATCGGTTGCTGCCCTC 60.515 66.667 0.00 0.00 0.00 4.30
1107 1415 2.664851 CAGAGCGCACGGGACAAA 60.665 61.111 11.47 0.00 0.00 2.83
1151 1459 2.124403 GCTGGTGGGAGGCATCAG 60.124 66.667 0.00 0.00 34.11 2.90
1152 1460 2.976490 GCTGGTGGGAGGCATCAGT 61.976 63.158 0.00 0.00 33.55 3.41
1617 1925 7.704271 TCACTATTACACCGATCTAAGTTGAG 58.296 38.462 0.00 0.00 0.00 3.02
1622 1930 3.504906 ACACCGATCTAAGTTGAGTTCGA 59.495 43.478 5.66 0.00 39.81 3.71
1644 1952 5.405269 CGACCGCTGTAAATCATATGAATCA 59.595 40.000 9.99 6.01 0.00 2.57
1648 1956 6.203530 CCGCTGTAAATCATATGAATCAGTGT 59.796 38.462 24.29 6.80 32.57 3.55
1704 2014 9.993881 CGCAACAAAAAGAAAAATGAAGTATAG 57.006 29.630 0.00 0.00 0.00 1.31
1712 2022 8.421673 AAGAAAAATGAAGTATAGTACTCCGC 57.578 34.615 0.00 0.00 38.26 5.54
1713 2023 6.985059 AGAAAAATGAAGTATAGTACTCCGCC 59.015 38.462 0.00 0.00 38.26 6.13
1714 2024 4.868314 AATGAAGTATAGTACTCCGCCC 57.132 45.455 0.00 0.00 38.26 6.13
1715 2025 2.224606 TGAAGTATAGTACTCCGCCCG 58.775 52.381 0.00 0.00 38.26 6.13
1716 2026 2.225467 GAAGTATAGTACTCCGCCCGT 58.775 52.381 0.00 0.00 38.26 5.28
1717 2027 1.889545 AGTATAGTACTCCGCCCGTC 58.110 55.000 0.00 0.00 32.47 4.79
1718 2028 0.877743 GTATAGTACTCCGCCCGTCC 59.122 60.000 0.00 0.00 0.00 4.79
1719 2029 0.250901 TATAGTACTCCGCCCGTCCC 60.251 60.000 0.00 0.00 0.00 4.46
1720 2030 2.288642 ATAGTACTCCGCCCGTCCCA 62.289 60.000 0.00 0.00 0.00 4.37
1721 2031 2.497792 TAGTACTCCGCCCGTCCCAA 62.498 60.000 0.00 0.00 0.00 4.12
1722 2032 2.604079 TACTCCGCCCGTCCCAAA 60.604 61.111 0.00 0.00 0.00 3.28
1723 2033 2.215625 TACTCCGCCCGTCCCAAAA 61.216 57.895 0.00 0.00 0.00 2.44
1724 2034 1.555477 TACTCCGCCCGTCCCAAAAT 61.555 55.000 0.00 0.00 0.00 1.82
1725 2035 1.222387 CTCCGCCCGTCCCAAAATA 59.778 57.895 0.00 0.00 0.00 1.40
1726 2036 0.393267 CTCCGCCCGTCCCAAAATAA 60.393 55.000 0.00 0.00 0.00 1.40
1727 2037 0.037877 TCCGCCCGTCCCAAAATAAA 59.962 50.000 0.00 0.00 0.00 1.40
1728 2038 1.107945 CCGCCCGTCCCAAAATAAAT 58.892 50.000 0.00 0.00 0.00 1.40
1729 2039 1.202359 CCGCCCGTCCCAAAATAAATG 60.202 52.381 0.00 0.00 0.00 2.32
1730 2040 1.474879 CGCCCGTCCCAAAATAAATGT 59.525 47.619 0.00 0.00 0.00 2.71
1731 2041 2.478879 CGCCCGTCCCAAAATAAATGTC 60.479 50.000 0.00 0.00 0.00 3.06
1732 2042 2.159156 GCCCGTCCCAAAATAAATGTCC 60.159 50.000 0.00 0.00 0.00 4.02
1733 2043 2.429250 CCCGTCCCAAAATAAATGTCCC 59.571 50.000 0.00 0.00 0.00 4.46
1734 2044 3.361786 CCGTCCCAAAATAAATGTCCCT 58.638 45.455 0.00 0.00 0.00 4.20
1735 2045 3.767131 CCGTCCCAAAATAAATGTCCCTT 59.233 43.478 0.00 0.00 0.00 3.95
1736 2046 4.951094 CCGTCCCAAAATAAATGTCCCTTA 59.049 41.667 0.00 0.00 0.00 2.69
1737 2047 5.067283 CCGTCCCAAAATAAATGTCCCTTAG 59.933 44.000 0.00 0.00 0.00 2.18
1738 2048 5.650703 CGTCCCAAAATAAATGTCCCTTAGT 59.349 40.000 0.00 0.00 0.00 2.24
1739 2049 6.824704 CGTCCCAAAATAAATGTCCCTTAGTA 59.175 38.462 0.00 0.00 0.00 1.82
1740 2050 7.201670 CGTCCCAAAATAAATGTCCCTTAGTAC 60.202 40.741 0.00 0.00 0.00 2.73
1741 2051 7.612633 GTCCCAAAATAAATGTCCCTTAGTACA 59.387 37.037 0.00 0.00 0.00 2.90
1742 2052 8.171400 TCCCAAAATAAATGTCCCTTAGTACAA 58.829 33.333 0.00 0.00 0.00 2.41
1743 2053 8.248253 CCCAAAATAAATGTCCCTTAGTACAAC 58.752 37.037 0.00 0.00 0.00 3.32
1744 2054 9.020731 CCAAAATAAATGTCCCTTAGTACAACT 57.979 33.333 0.00 0.00 0.00 3.16
1748 2058 9.582648 AATAAATGTCCCTTAGTACAACTTTGT 57.417 29.630 0.00 0.00 44.86 2.83
1768 2078 9.490379 ACTTTGTACTAGAGACACTTATTTTGG 57.510 33.333 0.00 0.00 0.00 3.28
1769 2079 8.842358 TTTGTACTAGAGACACTTATTTTGGG 57.158 34.615 0.00 0.00 0.00 4.12
1770 2080 7.786046 TGTACTAGAGACACTTATTTTGGGA 57.214 36.000 0.00 0.00 0.00 4.37
1771 2081 8.375493 TGTACTAGAGACACTTATTTTGGGAT 57.625 34.615 0.00 0.00 0.00 3.85
1772 2082 9.483489 TGTACTAGAGACACTTATTTTGGGATA 57.517 33.333 0.00 0.00 0.00 2.59
1773 2083 9.968870 GTACTAGAGACACTTATTTTGGGATAG 57.031 37.037 0.00 0.00 0.00 2.08
1774 2084 8.840200 ACTAGAGACACTTATTTTGGGATAGA 57.160 34.615 0.00 0.00 0.00 1.98
1775 2085 8.919145 ACTAGAGACACTTATTTTGGGATAGAG 58.081 37.037 0.00 0.00 0.00 2.43
1776 2086 7.130681 AGAGACACTTATTTTGGGATAGAGG 57.869 40.000 0.00 0.00 0.00 3.69
1777 2087 6.100424 AGAGACACTTATTTTGGGATAGAGGG 59.900 42.308 0.00 0.00 0.00 4.30
1778 2088 5.970640 AGACACTTATTTTGGGATAGAGGGA 59.029 40.000 0.00 0.00 0.00 4.20
1779 2089 6.100424 AGACACTTATTTTGGGATAGAGGGAG 59.900 42.308 0.00 0.00 0.00 4.30
1780 2090 5.731678 ACACTTATTTTGGGATAGAGGGAGT 59.268 40.000 0.00 0.00 0.00 3.85
1781 2091 6.906901 ACACTTATTTTGGGATAGAGGGAGTA 59.093 38.462 0.00 0.00 0.00 2.59
1790 2100 5.102783 TGGGATAGAGGGAGTATTTGGTAGT 60.103 44.000 0.00 0.00 0.00 2.73
1795 2105 4.957327 AGAGGGAGTATTTGGTAGTCAGTC 59.043 45.833 0.00 0.00 34.91 3.51
1824 2134 5.468658 ACAGTGCTCCTCCTATATTTACCT 58.531 41.667 0.00 0.00 0.00 3.08
1826 2136 5.540337 CAGTGCTCCTCCTATATTTACCTGA 59.460 44.000 0.00 0.00 0.00 3.86
1827 2137 6.212388 CAGTGCTCCTCCTATATTTACCTGAT 59.788 42.308 0.00 0.00 0.00 2.90
1828 2138 6.789959 AGTGCTCCTCCTATATTTACCTGATT 59.210 38.462 0.00 0.00 0.00 2.57
1829 2139 7.293535 AGTGCTCCTCCTATATTTACCTGATTT 59.706 37.037 0.00 0.00 0.00 2.17
1830 2140 7.389053 GTGCTCCTCCTATATTTACCTGATTTG 59.611 40.741 0.00 0.00 0.00 2.32
1831 2141 7.072454 TGCTCCTCCTATATTTACCTGATTTGT 59.928 37.037 0.00 0.00 0.00 2.83
1832 2142 8.594550 GCTCCTCCTATATTTACCTGATTTGTA 58.405 37.037 0.00 0.00 0.00 2.41
1846 2156 7.895759 ACCTGATTTGTATTTGTATTTGTGCT 58.104 30.769 0.00 0.00 0.00 4.40
1869 2181 8.472413 TGCTAATAATTGTCCTAGTACGTTTCT 58.528 33.333 0.00 0.00 0.00 2.52
1871 2183 7.982371 AATAATTGTCCTAGTACGTTTCTCG 57.018 36.000 0.00 0.00 46.00 4.04
1872 2184 2.907910 TGTCCTAGTACGTTTCTCGC 57.092 50.000 0.00 0.00 44.19 5.03
1873 2185 1.470098 TGTCCTAGTACGTTTCTCGCC 59.530 52.381 0.00 0.00 44.19 5.54
1874 2186 1.470098 GTCCTAGTACGTTTCTCGCCA 59.530 52.381 0.00 0.00 44.19 5.69
1875 2187 2.098770 GTCCTAGTACGTTTCTCGCCAT 59.901 50.000 0.00 0.00 44.19 4.40
1876 2188 2.098607 TCCTAGTACGTTTCTCGCCATG 59.901 50.000 0.00 0.00 44.19 3.66
1877 2189 2.098607 CCTAGTACGTTTCTCGCCATGA 59.901 50.000 0.00 0.00 44.19 3.07
1878 2190 1.992170 AGTACGTTTCTCGCCATGAC 58.008 50.000 0.00 0.00 44.19 3.06
1879 2191 1.271379 AGTACGTTTCTCGCCATGACA 59.729 47.619 0.00 0.00 44.19 3.58
1901 2213 5.183140 ACAATGGAGGTTTTTAGTCCGATTG 59.817 40.000 0.00 0.00 36.26 2.67
1912 2224 9.634163 GTTTTTAGTCCGATTGATAATTTTGGT 57.366 29.630 0.00 0.00 0.00 3.67
1919 2231 3.608316 TTGATAATTTTGGTGCTGCCC 57.392 42.857 0.00 0.00 36.04 5.36
1952 2264 0.539051 CCCTGCTGGAGTTCGAGAAT 59.461 55.000 11.88 0.00 35.39 2.40
1962 2274 2.996621 GAGTTCGAGAATGTGGTGAAGG 59.003 50.000 0.00 0.00 0.00 3.46
1975 2287 2.687935 TGGTGAAGGTGAAGAAGCAAAC 59.312 45.455 0.00 0.00 0.00 2.93
2006 2318 4.518217 GCACGATGCACTACATTACAATC 58.482 43.478 0.00 0.00 44.26 2.67
2098 2410 0.972883 AAGCTCGAGGAGTTCAAGCT 59.027 50.000 15.58 0.00 31.39 3.74
2110 2422 1.407656 TTCAAGCTGGTGGAGGACGT 61.408 55.000 0.00 0.00 0.00 4.34
2112 2424 0.951040 CAAGCTGGTGGAGGACGTTC 60.951 60.000 0.00 0.00 0.00 3.95
2119 2431 3.119096 GGAGGACGTTCCAAGCGC 61.119 66.667 0.00 0.00 39.61 5.92
2120 2432 2.357034 GAGGACGTTCCAAGCGCA 60.357 61.111 11.47 0.00 39.61 6.09
2121 2433 1.741770 GAGGACGTTCCAAGCGCAT 60.742 57.895 11.47 0.00 39.61 4.73
2122 2434 0.459585 GAGGACGTTCCAAGCGCATA 60.460 55.000 11.47 0.00 39.61 3.14
2123 2435 0.036765 AGGACGTTCCAAGCGCATAA 60.037 50.000 11.47 0.00 39.61 1.90
2124 2436 0.096454 GGACGTTCCAAGCGCATAAC 59.904 55.000 11.47 7.14 36.28 1.89
2125 2437 1.076332 GACGTTCCAAGCGCATAACT 58.924 50.000 11.47 0.00 0.00 2.24
2140 2452 6.992715 AGCGCATAACTCATAAGGTAAGATTT 59.007 34.615 11.47 0.00 0.00 2.17
2160 2472 4.437682 TTCCCTCTGTTTCACACTGAAT 57.562 40.909 0.00 0.00 36.11 2.57
2161 2473 5.560722 TTCCCTCTGTTTCACACTGAATA 57.439 39.130 0.00 0.00 36.11 1.75
2162 2474 4.894784 TCCCTCTGTTTCACACTGAATAC 58.105 43.478 0.00 0.00 36.11 1.89
2167 2479 3.054166 TGTTTCACACTGAATACCGTCG 58.946 45.455 0.00 0.00 36.11 5.12
2170 2482 3.861276 TCACACTGAATACCGTCGAAT 57.139 42.857 0.00 0.00 0.00 3.34
2189 2501 7.582679 CGTCGAATAAAATTGCGTCTATTTCAT 59.417 33.333 0.00 0.00 0.00 2.57
2234 2546 8.618677 TGATTCTTGTTTCAAGAGCATATCATC 58.381 33.333 14.89 12.11 0.00 2.92
2238 2550 7.494952 TCTTGTTTCAAGAGCATATCATCTCAG 59.505 37.037 7.92 0.00 0.00 3.35
2243 2555 4.260139 AGAGCATATCATCTCAGCTGTG 57.740 45.455 14.67 11.96 35.36 3.66
2272 2584 1.135199 GGTTGAATCATGCAGGCTGTG 60.135 52.381 17.16 7.60 0.00 3.66
2278 2622 4.096833 TGAATCATGCAGGCTGTGAATAAC 59.903 41.667 17.16 4.58 0.00 1.89
2340 2768 9.679661 ACACATGATGTTAACCATGAATTACTA 57.320 29.630 23.47 0.00 38.98 1.82
2657 3131 2.040278 GCCTGCCCATTATATCTGACCA 59.960 50.000 0.00 0.00 0.00 4.02
2663 3137 6.950842 TGCCCATTATATCTGACCATTAGAG 58.049 40.000 0.00 0.00 0.00 2.43
2667 3141 9.224267 CCCATTATATCTGACCATTAGAGTTTG 57.776 37.037 0.00 0.00 0.00 2.93
2724 3198 5.163622 GCAGTTGATTTAGCTTTGCCTGATA 60.164 40.000 0.00 0.00 0.00 2.15
2725 3199 6.460676 GCAGTTGATTTAGCTTTGCCTGATAT 60.461 38.462 0.00 0.00 0.00 1.63
2726 3200 6.916387 CAGTTGATTTAGCTTTGCCTGATATG 59.084 38.462 0.00 0.00 0.00 1.78
2727 3201 6.040166 AGTTGATTTAGCTTTGCCTGATATGG 59.960 38.462 0.00 0.00 0.00 2.74
2729 3203 5.893255 TGATTTAGCTTTGCCTGATATGGTT 59.107 36.000 0.00 0.00 0.00 3.67
2733 3207 3.950395 AGCTTTGCCTGATATGGTTTCTC 59.050 43.478 0.00 0.00 0.00 2.87
2734 3208 3.067320 GCTTTGCCTGATATGGTTTCTCC 59.933 47.826 0.00 0.00 0.00 3.71
2812 3288 3.672361 GCAGCGAGCAGAAAAGAAG 57.328 52.632 0.00 0.00 44.79 2.85
2813 3289 0.871057 GCAGCGAGCAGAAAAGAAGT 59.129 50.000 0.00 0.00 44.79 3.01
2814 3290 2.069273 GCAGCGAGCAGAAAAGAAGTA 58.931 47.619 0.00 0.00 44.79 2.24
2815 3291 2.093467 GCAGCGAGCAGAAAAGAAGTAG 59.907 50.000 0.00 0.00 44.79 2.57
2816 3292 2.670414 CAGCGAGCAGAAAAGAAGTAGG 59.330 50.000 0.00 0.00 0.00 3.18
2817 3293 2.563179 AGCGAGCAGAAAAGAAGTAGGA 59.437 45.455 0.00 0.00 0.00 2.94
2818 3294 3.006967 AGCGAGCAGAAAAGAAGTAGGAA 59.993 43.478 0.00 0.00 0.00 3.36
2836 3312 2.236395 GGAAGTAGGAACTGGCTGCTTA 59.764 50.000 0.00 0.00 41.52 3.09
2865 3341 7.716560 TGATAACTGCATTAGTGTAGCAATGAT 59.283 33.333 3.21 0.00 41.22 2.45
2866 3342 9.208022 GATAACTGCATTAGTGTAGCAATGATA 57.792 33.333 3.21 0.00 41.22 2.15
2867 3343 6.851222 ACTGCATTAGTGTAGCAATGATAC 57.149 37.500 1.14 1.14 41.22 2.24
2868 3344 6.348498 ACTGCATTAGTGTAGCAATGATACA 58.652 36.000 7.31 7.31 41.22 2.29
2869 3345 6.994496 ACTGCATTAGTGTAGCAATGATACAT 59.006 34.615 14.64 6.71 41.22 2.29
2870 3346 7.041576 ACTGCATTAGTGTAGCAATGATACATG 60.042 37.037 14.64 9.71 41.22 3.21
2871 3347 6.082338 GCATTAGTGTAGCAATGATACATGC 58.918 40.000 14.64 15.34 36.80 4.06
2872 3348 6.293571 GCATTAGTGTAGCAATGATACATGCA 60.294 38.462 22.23 8.81 44.95 3.96
2873 3349 7.574404 GCATTAGTGTAGCAATGATACATGCAT 60.574 37.037 22.23 10.33 44.95 3.96
2874 3350 5.684550 AGTGTAGCAATGATACATGCATG 57.315 39.130 25.09 25.09 44.95 4.06
2875 3351 5.370679 AGTGTAGCAATGATACATGCATGA 58.629 37.500 32.75 16.49 44.95 3.07
2876 3352 5.824097 AGTGTAGCAATGATACATGCATGAA 59.176 36.000 32.75 14.98 44.95 2.57
2877 3353 6.319405 AGTGTAGCAATGATACATGCATGAAA 59.681 34.615 32.75 19.72 44.95 2.69
2878 3354 6.635641 GTGTAGCAATGATACATGCATGAAAG 59.364 38.462 32.75 14.78 44.95 2.62
2879 3355 6.543100 TGTAGCAATGATACATGCATGAAAGA 59.457 34.615 32.75 14.67 44.95 2.52
2880 3356 6.073327 AGCAATGATACATGCATGAAAGAG 57.927 37.500 32.75 15.73 44.95 2.85
2881 3357 5.009710 AGCAATGATACATGCATGAAAGAGG 59.990 40.000 32.75 16.03 44.95 3.69
2882 3358 5.009310 GCAATGATACATGCATGAAAGAGGA 59.991 40.000 32.75 9.86 42.12 3.71
2883 3359 6.460537 GCAATGATACATGCATGAAAGAGGAA 60.461 38.462 32.75 9.89 42.12 3.36
2884 3360 7.658261 CAATGATACATGCATGAAAGAGGAAT 58.342 34.615 32.75 9.69 0.00 3.01
2885 3361 6.628919 TGATACATGCATGAAAGAGGAATG 57.371 37.500 32.75 3.64 0.00 2.67
2886 3362 3.795623 ACATGCATGAAAGAGGAATGC 57.204 42.857 32.75 0.01 45.51 3.56
2890 3366 3.160777 GCATGAAAGAGGAATGCAAGG 57.839 47.619 0.00 0.00 44.83 3.61
2891 3367 2.756760 GCATGAAAGAGGAATGCAAGGA 59.243 45.455 0.00 0.00 44.83 3.36
2892 3368 3.194116 GCATGAAAGAGGAATGCAAGGAA 59.806 43.478 0.00 0.00 44.83 3.36
2893 3369 4.741342 CATGAAAGAGGAATGCAAGGAAC 58.259 43.478 0.00 0.00 0.00 3.62
2894 3370 3.831323 TGAAAGAGGAATGCAAGGAACA 58.169 40.909 0.00 0.00 0.00 3.18
2895 3371 4.410099 TGAAAGAGGAATGCAAGGAACAT 58.590 39.130 0.00 0.00 0.00 2.71
2896 3372 4.834496 TGAAAGAGGAATGCAAGGAACATT 59.166 37.500 0.00 0.00 40.37 2.71
2903 3379 3.947910 ATGCAAGGAACATTCAGGTTG 57.052 42.857 0.00 0.00 0.00 3.77
2904 3380 2.665165 TGCAAGGAACATTCAGGTTGT 58.335 42.857 0.00 0.00 0.00 3.32
2905 3381 3.030291 TGCAAGGAACATTCAGGTTGTT 58.970 40.909 0.00 0.00 39.91 2.83
2906 3382 3.181477 TGCAAGGAACATTCAGGTTGTTG 60.181 43.478 0.00 0.00 37.43 3.33
2907 3383 3.799917 GCAAGGAACATTCAGGTTGTTGG 60.800 47.826 0.00 0.00 37.43 3.77
2908 3384 3.312736 AGGAACATTCAGGTTGTTGGT 57.687 42.857 0.00 0.00 37.43 3.67
2909 3385 4.447138 AGGAACATTCAGGTTGTTGGTA 57.553 40.909 0.00 0.00 37.43 3.25
2910 3386 4.798882 AGGAACATTCAGGTTGTTGGTAA 58.201 39.130 0.00 0.00 37.43 2.85
2911 3387 4.583073 AGGAACATTCAGGTTGTTGGTAAC 59.417 41.667 0.00 0.00 37.43 2.50
2912 3388 4.583073 GGAACATTCAGGTTGTTGGTAACT 59.417 41.667 0.00 0.00 37.43 2.24
2913 3389 5.507315 GGAACATTCAGGTTGTTGGTAACTG 60.507 44.000 0.00 0.00 37.43 3.16
2914 3390 3.317993 ACATTCAGGTTGTTGGTAACTGC 59.682 43.478 0.00 0.00 37.61 4.40
2915 3391 3.290948 TTCAGGTTGTTGGTAACTGCT 57.709 42.857 0.00 0.00 37.61 4.24
2916 3392 3.290948 TCAGGTTGTTGGTAACTGCTT 57.709 42.857 0.00 0.00 37.61 3.91
2917 3393 4.425180 TCAGGTTGTTGGTAACTGCTTA 57.575 40.909 0.00 0.00 37.61 3.09
2918 3394 4.783055 TCAGGTTGTTGGTAACTGCTTAA 58.217 39.130 0.00 0.00 37.61 1.85
2919 3395 4.819630 TCAGGTTGTTGGTAACTGCTTAAG 59.180 41.667 0.00 0.00 37.61 1.85
2920 3396 3.568430 AGGTTGTTGGTAACTGCTTAAGC 59.432 43.478 20.84 20.84 42.50 3.09
2921 3397 3.568430 GGTTGTTGGTAACTGCTTAAGCT 59.432 43.478 26.90 10.75 42.66 3.74
2922 3398 4.037565 GGTTGTTGGTAACTGCTTAAGCTT 59.962 41.667 26.90 16.62 42.66 3.74
2923 3399 5.212934 GTTGTTGGTAACTGCTTAAGCTTC 58.787 41.667 26.90 12.59 42.66 3.86
2924 3400 3.496884 TGTTGGTAACTGCTTAAGCTTCG 59.503 43.478 26.90 17.26 42.66 3.79
2925 3401 2.695359 TGGTAACTGCTTAAGCTTCGG 58.305 47.619 26.90 16.24 42.66 4.30
2926 3402 2.038033 TGGTAACTGCTTAAGCTTCGGT 59.962 45.455 26.90 16.32 42.66 4.69
2927 3403 2.415512 GGTAACTGCTTAAGCTTCGGTG 59.584 50.000 26.90 12.61 42.66 4.94
2928 3404 2.543777 AACTGCTTAAGCTTCGGTGA 57.456 45.000 26.90 5.17 42.66 4.02
2929 3405 2.086054 ACTGCTTAAGCTTCGGTGAG 57.914 50.000 26.90 16.42 42.66 3.51
2930 3406 1.338200 ACTGCTTAAGCTTCGGTGAGG 60.338 52.381 26.90 8.99 42.66 3.86
2931 3407 0.036388 TGCTTAAGCTTCGGTGAGGG 60.036 55.000 26.90 0.00 42.66 4.30
2932 3408 0.249398 GCTTAAGCTTCGGTGAGGGA 59.751 55.000 20.38 0.00 38.21 4.20
2933 3409 1.740718 GCTTAAGCTTCGGTGAGGGAG 60.741 57.143 20.38 0.00 38.21 4.30
2934 3410 0.902531 TTAAGCTTCGGTGAGGGAGG 59.097 55.000 0.00 0.00 0.00 4.30
2935 3411 1.614241 TAAGCTTCGGTGAGGGAGGC 61.614 60.000 0.00 0.00 36.83 4.70
2936 3412 3.706373 GCTTCGGTGAGGGAGGCA 61.706 66.667 0.00 0.00 36.60 4.75
2937 3413 2.581354 CTTCGGTGAGGGAGGCAG 59.419 66.667 0.00 0.00 0.00 4.85
2938 3414 3.672295 CTTCGGTGAGGGAGGCAGC 62.672 68.421 0.00 0.00 0.00 5.25
2939 3415 4.704103 TCGGTGAGGGAGGCAGCT 62.704 66.667 0.00 0.00 0.00 4.24
2940 3416 2.759973 CGGTGAGGGAGGCAGCTA 60.760 66.667 0.00 0.00 0.00 3.32
2941 3417 2.790791 CGGTGAGGGAGGCAGCTAG 61.791 68.421 0.00 0.00 0.00 3.42
2942 3418 2.439104 GGTGAGGGAGGCAGCTAGG 61.439 68.421 0.00 0.00 0.00 3.02
2943 3419 2.041508 TGAGGGAGGCAGCTAGGG 60.042 66.667 0.00 0.00 0.00 3.53
2944 3420 2.041405 GAGGGAGGCAGCTAGGGT 60.041 66.667 0.00 0.00 0.00 4.34
2945 3421 1.690985 GAGGGAGGCAGCTAGGGTT 60.691 63.158 0.00 0.00 0.00 4.11
2946 3422 1.690985 AGGGAGGCAGCTAGGGTTC 60.691 63.158 0.00 0.00 0.00 3.62
2947 3423 2.747443 GGGAGGCAGCTAGGGTTCC 61.747 68.421 0.00 0.00 0.00 3.62
2948 3424 2.747443 GGAGGCAGCTAGGGTTCCC 61.747 68.421 0.00 0.00 0.00 3.97
2949 3425 2.692741 AGGCAGCTAGGGTTCCCC 60.693 66.667 4.02 0.00 45.90 4.81
2959 3435 4.040198 GGTTCCCCCTCCTCCCCT 62.040 72.222 0.00 0.00 0.00 4.79
2960 3436 2.367107 GTTCCCCCTCCTCCCCTC 60.367 72.222 0.00 0.00 0.00 4.30
2961 3437 3.707189 TTCCCCCTCCTCCCCTCC 61.707 72.222 0.00 0.00 0.00 4.30
2964 3440 4.825679 CCCCTCCTCCCCTCCCAC 62.826 77.778 0.00 0.00 0.00 4.61
2965 3441 4.825679 CCCTCCTCCCCTCCCACC 62.826 77.778 0.00 0.00 0.00 4.61
2999 3475 3.787001 CCTGCCTCCGTCCCCTTC 61.787 72.222 0.00 0.00 0.00 3.46
3000 3476 3.003173 CTGCCTCCGTCCCCTTCA 61.003 66.667 0.00 0.00 0.00 3.02
3001 3477 3.003173 TGCCTCCGTCCCCTTCAG 61.003 66.667 0.00 0.00 0.00 3.02
3002 3478 4.475135 GCCTCCGTCCCCTTCAGC 62.475 72.222 0.00 0.00 0.00 4.26
3003 3479 3.787001 CCTCCGTCCCCTTCAGCC 61.787 72.222 0.00 0.00 0.00 4.85
3004 3480 3.787001 CTCCGTCCCCTTCAGCCC 61.787 72.222 0.00 0.00 0.00 5.19
3005 3481 4.332543 TCCGTCCCCTTCAGCCCT 62.333 66.667 0.00 0.00 0.00 5.19
3006 3482 3.787001 CCGTCCCCTTCAGCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
3007 3483 3.787001 CGTCCCCTTCAGCCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
3008 3484 3.412408 GTCCCCTTCAGCCCTCCC 61.412 72.222 0.00 0.00 0.00 4.30
3009 3485 4.760220 TCCCCTTCAGCCCTCCCC 62.760 72.222 0.00 0.00 0.00 4.81
3011 3487 4.767892 CCCTTCAGCCCTCCCCCT 62.768 72.222 0.00 0.00 0.00 4.79
3012 3488 2.615288 CCTTCAGCCCTCCCCCTT 60.615 66.667 0.00 0.00 0.00 3.95
3013 3489 2.684499 CCTTCAGCCCTCCCCCTTC 61.684 68.421 0.00 0.00 0.00 3.46
3014 3490 2.614013 TTCAGCCCTCCCCCTTCC 60.614 66.667 0.00 0.00 0.00 3.46
3015 3491 4.760220 TCAGCCCTCCCCCTTCCC 62.760 72.222 0.00 0.00 0.00 3.97
3019 3495 4.371231 CCCTCCCCCTTCCCCTGT 62.371 72.222 0.00 0.00 0.00 4.00
3020 3496 2.692741 CCTCCCCCTTCCCCTGTC 60.693 72.222 0.00 0.00 0.00 3.51
3021 3497 2.692741 CTCCCCCTTCCCCTGTCC 60.693 72.222 0.00 0.00 0.00 4.02
3022 3498 3.547737 TCCCCCTTCCCCTGTCCA 61.548 66.667 0.00 0.00 0.00 4.02
3023 3499 3.017581 CCCCCTTCCCCTGTCCAG 61.018 72.222 0.00 0.00 0.00 3.86
3024 3500 2.124996 CCCCTTCCCCTGTCCAGA 59.875 66.667 0.00 0.00 0.00 3.86
3025 3501 1.308216 CCCCTTCCCCTGTCCAGAT 60.308 63.158 0.00 0.00 0.00 2.90
3026 3502 1.348775 CCCCTTCCCCTGTCCAGATC 61.349 65.000 0.00 0.00 0.00 2.75
3027 3503 1.348775 CCCTTCCCCTGTCCAGATCC 61.349 65.000 0.00 0.00 0.00 3.36
3028 3504 1.690219 CCTTCCCCTGTCCAGATCCG 61.690 65.000 0.00 0.00 0.00 4.18
3029 3505 2.317149 CTTCCCCTGTCCAGATCCGC 62.317 65.000 0.00 0.00 0.00 5.54
3030 3506 3.866582 CCCCTGTCCAGATCCGCC 61.867 72.222 0.00 0.00 0.00 6.13
3031 3507 2.765807 CCCTGTCCAGATCCGCCT 60.766 66.667 0.00 0.00 0.00 5.52
3032 3508 2.801631 CCCTGTCCAGATCCGCCTC 61.802 68.421 0.00 0.00 0.00 4.70
3033 3509 2.801631 CCTGTCCAGATCCGCCTCC 61.802 68.421 0.00 0.00 0.00 4.30
3034 3510 1.760086 CTGTCCAGATCCGCCTCCT 60.760 63.158 0.00 0.00 0.00 3.69
3035 3511 1.743321 CTGTCCAGATCCGCCTCCTC 61.743 65.000 0.00 0.00 0.00 3.71
3036 3512 2.519541 TCCAGATCCGCCTCCTCG 60.520 66.667 0.00 0.00 0.00 4.63
3072 3548 4.613929 GCTCAAGCTCCTCACCTG 57.386 61.111 0.00 0.00 38.21 4.00
3073 3549 1.744741 GCTCAAGCTCCTCACCTGC 60.745 63.158 0.00 0.00 38.21 4.85
3074 3550 1.447489 CTCAAGCTCCTCACCTGCG 60.447 63.158 0.00 0.00 0.00 5.18
3075 3551 2.435586 CAAGCTCCTCACCTGCGG 60.436 66.667 0.00 0.00 0.00 5.69
3076 3552 3.710722 AAGCTCCTCACCTGCGGG 61.711 66.667 11.02 11.02 38.88 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.716195 CAGGGTCACGGCCATGGA 61.716 66.667 18.40 0.00 36.74 3.41
208 209 0.530744 ACAGCTCCAAGAATACGCGA 59.469 50.000 15.93 0.00 0.00 5.87
510 513 2.589442 GTGTTGCAACGGGGTCGA 60.589 61.111 23.79 2.11 40.11 4.20
511 514 2.897846 TGTGTTGCAACGGGGTCG 60.898 61.111 23.79 0.00 43.02 4.79
707 710 9.447279 TCTCCTTTGGTTCATAGGATAGAAATA 57.553 33.333 7.38 0.00 39.94 1.40
708 711 8.337118 TCTCCTTTGGTTCATAGGATAGAAAT 57.663 34.615 7.38 0.00 39.94 2.17
709 712 7.749377 TCTCCTTTGGTTCATAGGATAGAAA 57.251 36.000 7.38 0.00 39.94 2.52
710 713 7.623677 TCTTCTCCTTTGGTTCATAGGATAGAA 59.376 37.037 7.38 7.72 39.94 2.10
711 714 7.132805 TCTTCTCCTTTGGTTCATAGGATAGA 58.867 38.462 7.38 9.80 39.94 1.98
712 715 7.366847 TCTTCTCCTTTGGTTCATAGGATAG 57.633 40.000 7.38 8.18 39.94 2.08
713 716 7.365652 GGTTCTTCTCCTTTGGTTCATAGGATA 60.366 40.741 7.38 0.00 39.94 2.59
714 717 6.418946 GTTCTTCTCCTTTGGTTCATAGGAT 58.581 40.000 7.38 0.00 39.94 3.24
715 718 5.280521 GGTTCTTCTCCTTTGGTTCATAGGA 60.281 44.000 6.86 6.86 38.81 2.94
716 719 4.944317 GGTTCTTCTCCTTTGGTTCATAGG 59.056 45.833 0.00 0.00 34.61 2.57
717 720 5.560724 TGGTTCTTCTCCTTTGGTTCATAG 58.439 41.667 0.00 0.00 0.00 2.23
718 721 5.576563 TGGTTCTTCTCCTTTGGTTCATA 57.423 39.130 0.00 0.00 0.00 2.15
719 722 4.453480 TGGTTCTTCTCCTTTGGTTCAT 57.547 40.909 0.00 0.00 0.00 2.57
720 723 3.943671 TGGTTCTTCTCCTTTGGTTCA 57.056 42.857 0.00 0.00 0.00 3.18
721 724 4.038042 CCTTTGGTTCTTCTCCTTTGGTTC 59.962 45.833 0.00 0.00 0.00 3.62
722 725 3.960755 CCTTTGGTTCTTCTCCTTTGGTT 59.039 43.478 0.00 0.00 0.00 3.67
723 726 3.204382 TCCTTTGGTTCTTCTCCTTTGGT 59.796 43.478 0.00 0.00 0.00 3.67
724 727 3.823304 CTCCTTTGGTTCTTCTCCTTTGG 59.177 47.826 0.00 0.00 0.00 3.28
725 728 4.718961 TCTCCTTTGGTTCTTCTCCTTTG 58.281 43.478 0.00 0.00 0.00 2.77
726 729 5.380900 CTTCTCCTTTGGTTCTTCTCCTTT 58.619 41.667 0.00 0.00 0.00 3.11
727 730 4.202514 CCTTCTCCTTTGGTTCTTCTCCTT 60.203 45.833 0.00 0.00 0.00 3.36
728 731 3.329225 CCTTCTCCTTTGGTTCTTCTCCT 59.671 47.826 0.00 0.00 0.00 3.69
729 732 3.328050 TCCTTCTCCTTTGGTTCTTCTCC 59.672 47.826 0.00 0.00 0.00 3.71
730 733 4.625607 TCCTTCTCCTTTGGTTCTTCTC 57.374 45.455 0.00 0.00 0.00 2.87
731 734 4.202514 CCTTCCTTCTCCTTTGGTTCTTCT 60.203 45.833 0.00 0.00 0.00 2.85
732 735 4.075682 CCTTCCTTCTCCTTTGGTTCTTC 58.924 47.826 0.00 0.00 0.00 2.87
733 736 3.722101 TCCTTCCTTCTCCTTTGGTTCTT 59.278 43.478 0.00 0.00 0.00 2.52
734 737 3.327439 TCCTTCCTTCTCCTTTGGTTCT 58.673 45.455 0.00 0.00 0.00 3.01
735 738 3.790089 TCCTTCCTTCTCCTTTGGTTC 57.210 47.619 0.00 0.00 0.00 3.62
736 739 4.509302 GGATTCCTTCCTTCTCCTTTGGTT 60.509 45.833 0.00 0.00 41.78 3.67
737 740 3.010696 GGATTCCTTCCTTCTCCTTTGGT 59.989 47.826 0.00 0.00 41.78 3.67
738 741 3.010584 TGGATTCCTTCCTTCTCCTTTGG 59.989 47.826 3.95 0.00 45.68 3.28
739 742 4.268359 CTGGATTCCTTCCTTCTCCTTTG 58.732 47.826 3.95 0.00 45.68 2.77
740 743 3.308760 GCTGGATTCCTTCCTTCTCCTTT 60.309 47.826 3.95 0.00 45.68 3.11
741 744 2.240921 GCTGGATTCCTTCCTTCTCCTT 59.759 50.000 3.95 0.00 45.68 3.36
742 745 1.843206 GCTGGATTCCTTCCTTCTCCT 59.157 52.381 3.95 0.00 45.68 3.69
743 746 1.133945 GGCTGGATTCCTTCCTTCTCC 60.134 57.143 3.95 0.00 45.68 3.71
744 747 1.561542 TGGCTGGATTCCTTCCTTCTC 59.438 52.381 3.95 0.00 45.68 2.87
745 748 1.673767 TGGCTGGATTCCTTCCTTCT 58.326 50.000 3.95 0.00 45.68 2.85
746 749 2.305009 CATGGCTGGATTCCTTCCTTC 58.695 52.381 3.95 0.00 45.68 3.46
747 750 1.063417 CCATGGCTGGATTCCTTCCTT 60.063 52.381 0.00 0.97 46.37 3.36
830 833 3.053896 CCGTGCCGACTTTTCCCC 61.054 66.667 0.00 0.00 0.00 4.81
942 945 1.074471 GCAGGGGAGGAGGGATACA 60.074 63.158 0.00 0.00 39.74 2.29
949 952 3.478274 GGCAGAGCAGGGGAGGAG 61.478 72.222 0.00 0.00 0.00 3.69
1026 1334 4.115199 AGGGCAGCAACCGATCCC 62.115 66.667 0.00 0.00 37.24 3.85
1035 1343 1.613332 TAGCAAGAGGAGGGCAGCA 60.613 57.895 0.00 0.00 0.00 4.41
1107 1415 3.720601 TCTTCCGCCATGGCAGCT 61.721 61.111 34.93 0.00 42.06 4.24
1135 1443 1.077930 CACTGATGCCTCCCACCAG 60.078 63.158 0.00 0.00 0.00 4.00
1173 1481 3.396491 GATGACGTCGAGGTCGTTT 57.604 52.632 28.11 17.82 41.64 3.60
1593 1901 7.481642 ACTCAACTTAGATCGGTGTAATAGTG 58.518 38.462 0.00 0.00 0.00 2.74
1597 1905 6.034591 CGAACTCAACTTAGATCGGTGTAAT 58.965 40.000 0.00 0.00 37.91 1.89
1617 1925 4.743151 TCATATGATTTACAGCGGTCGAAC 59.257 41.667 0.00 0.00 0.00 3.95
1622 1930 6.203530 CACTGATTCATATGATTTACAGCGGT 59.796 38.462 6.17 2.25 0.00 5.68
1644 1952 5.563592 TCATGGTTCAGATCAAATCACACT 58.436 37.500 0.00 0.00 0.00 3.55
1648 1956 6.420638 AGACATCATGGTTCAGATCAAATCA 58.579 36.000 0.00 0.00 0.00 2.57
1690 1998 6.053650 GGGCGGAGTACTATACTTCATTTTT 58.946 40.000 0.00 0.00 39.59 1.94
1693 2001 3.255149 CGGGCGGAGTACTATACTTCATT 59.745 47.826 0.00 0.00 39.59 2.57
1704 2014 2.453379 TTTTGGGACGGGCGGAGTAC 62.453 60.000 0.00 0.00 0.00 2.73
1705 2015 1.555477 ATTTTGGGACGGGCGGAGTA 61.555 55.000 0.00 0.00 0.00 2.59
1706 2016 1.555477 TATTTTGGGACGGGCGGAGT 61.555 55.000 0.00 0.00 0.00 3.85
1707 2017 0.393267 TTATTTTGGGACGGGCGGAG 60.393 55.000 0.00 0.00 0.00 4.63
1708 2018 0.037877 TTTATTTTGGGACGGGCGGA 59.962 50.000 0.00 0.00 0.00 5.54
1709 2019 1.107945 ATTTATTTTGGGACGGGCGG 58.892 50.000 0.00 0.00 0.00 6.13
1710 2020 1.474879 ACATTTATTTTGGGACGGGCG 59.525 47.619 0.00 0.00 0.00 6.13
1711 2021 2.159156 GGACATTTATTTTGGGACGGGC 60.159 50.000 0.00 0.00 0.00 6.13
1712 2022 2.429250 GGGACATTTATTTTGGGACGGG 59.571 50.000 0.00 0.00 0.00 5.28
1713 2023 3.361786 AGGGACATTTATTTTGGGACGG 58.638 45.455 0.00 0.00 0.00 4.79
1714 2024 5.650703 ACTAAGGGACATTTATTTTGGGACG 59.349 40.000 0.00 0.00 0.00 4.79
1715 2025 7.612633 TGTACTAAGGGACATTTATTTTGGGAC 59.387 37.037 0.00 0.00 0.00 4.46
1716 2026 7.700846 TGTACTAAGGGACATTTATTTTGGGA 58.299 34.615 0.00 0.00 0.00 4.37
1717 2027 7.948034 TGTACTAAGGGACATTTATTTTGGG 57.052 36.000 0.00 0.00 0.00 4.12
1718 2028 9.020731 AGTTGTACTAAGGGACATTTATTTTGG 57.979 33.333 0.00 0.00 0.00 3.28
1722 2032 9.582648 ACAAAGTTGTACTAAGGGACATTTATT 57.417 29.630 0.00 0.00 40.16 1.40
1742 2052 9.490379 CCAAAATAAGTGTCTCTAGTACAAAGT 57.510 33.333 0.00 0.00 0.00 2.66
1743 2053 8.936864 CCCAAAATAAGTGTCTCTAGTACAAAG 58.063 37.037 0.00 0.00 0.00 2.77
1744 2054 8.653191 TCCCAAAATAAGTGTCTCTAGTACAAA 58.347 33.333 0.00 0.00 0.00 2.83
1745 2055 8.197592 TCCCAAAATAAGTGTCTCTAGTACAA 57.802 34.615 0.00 0.00 0.00 2.41
1746 2056 7.786046 TCCCAAAATAAGTGTCTCTAGTACA 57.214 36.000 0.00 0.00 0.00 2.90
1747 2057 9.968870 CTATCCCAAAATAAGTGTCTCTAGTAC 57.031 37.037 0.00 0.00 0.00 2.73
1748 2058 9.931698 TCTATCCCAAAATAAGTGTCTCTAGTA 57.068 33.333 0.00 0.00 0.00 1.82
1749 2059 8.840200 TCTATCCCAAAATAAGTGTCTCTAGT 57.160 34.615 0.00 0.00 0.00 2.57
1750 2060 8.364142 CCTCTATCCCAAAATAAGTGTCTCTAG 58.636 40.741 0.00 0.00 0.00 2.43
1751 2061 7.290248 CCCTCTATCCCAAAATAAGTGTCTCTA 59.710 40.741 0.00 0.00 0.00 2.43
1752 2062 6.100424 CCCTCTATCCCAAAATAAGTGTCTCT 59.900 42.308 0.00 0.00 0.00 3.10
1753 2063 6.099845 TCCCTCTATCCCAAAATAAGTGTCTC 59.900 42.308 0.00 0.00 0.00 3.36
1754 2064 5.970640 TCCCTCTATCCCAAAATAAGTGTCT 59.029 40.000 0.00 0.00 0.00 3.41
1755 2065 6.126739 ACTCCCTCTATCCCAAAATAAGTGTC 60.127 42.308 0.00 0.00 0.00 3.67
1756 2066 5.731678 ACTCCCTCTATCCCAAAATAAGTGT 59.268 40.000 0.00 0.00 0.00 3.55
1757 2067 6.253946 ACTCCCTCTATCCCAAAATAAGTG 57.746 41.667 0.00 0.00 0.00 3.16
1758 2068 8.582891 AATACTCCCTCTATCCCAAAATAAGT 57.417 34.615 0.00 0.00 0.00 2.24
1759 2069 9.289782 CAAATACTCCCTCTATCCCAAAATAAG 57.710 37.037 0.00 0.00 0.00 1.73
1760 2070 8.224720 CCAAATACTCCCTCTATCCCAAAATAA 58.775 37.037 0.00 0.00 0.00 1.40
1761 2071 7.352522 ACCAAATACTCCCTCTATCCCAAAATA 59.647 37.037 0.00 0.00 0.00 1.40
1762 2072 6.162241 ACCAAATACTCCCTCTATCCCAAAAT 59.838 38.462 0.00 0.00 0.00 1.82
1763 2073 5.494706 ACCAAATACTCCCTCTATCCCAAAA 59.505 40.000 0.00 0.00 0.00 2.44
1764 2074 5.043762 ACCAAATACTCCCTCTATCCCAAA 58.956 41.667 0.00 0.00 0.00 3.28
1765 2075 4.641868 ACCAAATACTCCCTCTATCCCAA 58.358 43.478 0.00 0.00 0.00 4.12
1766 2076 4.295905 ACCAAATACTCCCTCTATCCCA 57.704 45.455 0.00 0.00 0.00 4.37
1767 2077 5.404395 ACTACCAAATACTCCCTCTATCCC 58.596 45.833 0.00 0.00 0.00 3.85
1768 2078 6.075984 TGACTACCAAATACTCCCTCTATCC 58.924 44.000 0.00 0.00 0.00 2.59
1769 2079 6.778559 ACTGACTACCAAATACTCCCTCTATC 59.221 42.308 0.00 0.00 0.00 2.08
1770 2080 6.684538 ACTGACTACCAAATACTCCCTCTAT 58.315 40.000 0.00 0.00 0.00 1.98
1771 2081 6.088541 ACTGACTACCAAATACTCCCTCTA 57.911 41.667 0.00 0.00 0.00 2.43
1772 2082 4.949121 ACTGACTACCAAATACTCCCTCT 58.051 43.478 0.00 0.00 0.00 3.69
1773 2083 4.099727 GGACTGACTACCAAATACTCCCTC 59.900 50.000 0.00 0.00 0.00 4.30
1774 2084 4.031611 GGACTGACTACCAAATACTCCCT 58.968 47.826 0.00 0.00 0.00 4.20
1775 2085 3.773119 TGGACTGACTACCAAATACTCCC 59.227 47.826 0.00 0.00 32.93 4.30
1776 2086 5.046520 AGTTGGACTGACTACCAAATACTCC 60.047 44.000 0.00 0.00 45.75 3.85
1777 2087 6.038997 AGTTGGACTGACTACCAAATACTC 57.961 41.667 0.00 0.00 45.75 2.59
1780 2090 6.495872 ACTGTAGTTGGACTGACTACCAAATA 59.504 38.462 10.80 0.00 45.59 1.40
1781 2091 5.307196 ACTGTAGTTGGACTGACTACCAAAT 59.693 40.000 10.80 0.00 45.59 2.32
1790 2100 1.618837 GGAGCACTGTAGTTGGACTGA 59.381 52.381 0.00 0.00 0.00 3.41
1795 2105 1.270907 AGGAGGAGCACTGTAGTTGG 58.729 55.000 0.00 0.00 0.00 3.77
1844 2154 8.868635 AGAAACGTACTAGGACAATTATTAGC 57.131 34.615 5.80 0.00 0.00 3.09
1846 2156 7.645340 GCGAGAAACGTACTAGGACAATTATTA 59.355 37.037 5.80 0.00 44.60 0.98
1849 2159 5.335127 GCGAGAAACGTACTAGGACAATTA 58.665 41.667 5.80 0.00 44.60 1.40
1873 2185 5.391950 CGGACTAAAAACCTCCATTGTCATG 60.392 44.000 0.00 0.00 0.00 3.07
1874 2186 4.700213 CGGACTAAAAACCTCCATTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
1875 2187 4.069304 CGGACTAAAAACCTCCATTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
1876 2188 4.320870 TCGGACTAAAAACCTCCATTGTC 58.679 43.478 0.00 0.00 0.00 3.18
1877 2189 4.360951 TCGGACTAAAAACCTCCATTGT 57.639 40.909 0.00 0.00 0.00 2.71
1878 2190 5.414454 TCAATCGGACTAAAAACCTCCATTG 59.586 40.000 0.00 0.00 31.12 2.82
1879 2191 5.566469 TCAATCGGACTAAAAACCTCCATT 58.434 37.500 0.00 0.00 0.00 3.16
1901 2213 2.110578 AGGGGCAGCACCAAAATTATC 58.889 47.619 18.55 0.00 42.05 1.75
1919 2231 2.110967 CAGGGCATTCTGCGACAGG 61.111 63.158 6.95 0.00 46.21 4.00
1952 2264 1.211703 TGCTTCTTCACCTTCACCACA 59.788 47.619 0.00 0.00 0.00 4.17
1975 2287 2.177531 GCATCGTGCCAGCAACAG 59.822 61.111 0.00 0.00 37.42 3.16
1996 2308 2.569853 TCAGTGACCCGGATTGTAATGT 59.430 45.455 0.73 0.00 0.00 2.71
2098 2410 1.752198 CTTGGAACGTCCTCCACCA 59.248 57.895 8.51 0.13 45.37 4.17
2110 2422 3.876914 CCTTATGAGTTATGCGCTTGGAA 59.123 43.478 9.73 0.00 0.00 3.53
2112 2424 3.206150 ACCTTATGAGTTATGCGCTTGG 58.794 45.455 9.73 0.00 0.00 3.61
2116 2428 6.787085 AATCTTACCTTATGAGTTATGCGC 57.213 37.500 0.00 0.00 0.00 6.09
2119 2431 9.495572 GAGGGAAATCTTACCTTATGAGTTATG 57.504 37.037 0.00 0.00 34.02 1.90
2120 2432 9.453830 AGAGGGAAATCTTACCTTATGAGTTAT 57.546 33.333 0.00 0.00 34.02 1.89
2121 2433 8.705594 CAGAGGGAAATCTTACCTTATGAGTTA 58.294 37.037 0.00 0.00 34.02 2.24
2122 2434 7.182930 ACAGAGGGAAATCTTACCTTATGAGTT 59.817 37.037 9.60 0.00 34.02 3.01
2123 2435 6.674419 ACAGAGGGAAATCTTACCTTATGAGT 59.326 38.462 9.60 0.00 34.02 3.41
2124 2436 7.130681 ACAGAGGGAAATCTTACCTTATGAG 57.869 40.000 9.60 0.00 34.02 2.90
2125 2437 7.510675 AACAGAGGGAAATCTTACCTTATGA 57.489 36.000 9.60 0.00 34.02 2.15
2160 2472 4.175516 AGACGCAATTTTATTCGACGGTA 58.824 39.130 0.00 0.00 0.00 4.02
2161 2473 2.997986 AGACGCAATTTTATTCGACGGT 59.002 40.909 0.00 0.00 0.00 4.83
2162 2474 3.651562 AGACGCAATTTTATTCGACGG 57.348 42.857 0.00 0.00 0.00 4.79
2167 2479 7.357532 CCGCATGAAATAGACGCAATTTTATTC 60.358 37.037 0.00 0.00 0.00 1.75
2170 2482 5.270083 CCGCATGAAATAGACGCAATTTTA 58.730 37.500 0.00 0.00 0.00 1.52
2189 2501 1.539388 CAACCTTGATACTTTGCCGCA 59.461 47.619 0.00 0.00 0.00 5.69
2234 2546 1.521450 CCAGGGCAAACACAGCTGAG 61.521 60.000 23.35 16.23 0.00 3.35
2238 2550 1.067916 CAACCAGGGCAAACACAGC 59.932 57.895 0.00 0.00 0.00 4.40
2243 2555 2.932187 GCATGATTCAACCAGGGCAAAC 60.932 50.000 0.00 0.00 0.00 2.93
2586 3023 6.238814 GGGTAAAACAAGTCGATCAAAGGAAA 60.239 38.462 0.00 0.00 0.00 3.13
2597 3066 0.879090 GCCCAGGGTAAAACAAGTCG 59.121 55.000 7.55 0.00 0.00 4.18
2636 3110 2.040278 TGGTCAGATATAATGGGCAGGC 59.960 50.000 0.00 0.00 0.00 4.85
2657 3131 9.959721 TTAAGCTAAACCATCTCAAACTCTAAT 57.040 29.630 0.00 0.00 0.00 1.73
2694 3168 6.536224 GGCAAAGCTAAATCAACTGCAATAAT 59.464 34.615 0.00 0.00 0.00 1.28
2698 3172 3.321682 AGGCAAAGCTAAATCAACTGCAA 59.678 39.130 0.00 0.00 0.00 4.08
2726 3200 6.295405 GCTATCCCTCTTATACTGGAGAAACC 60.295 46.154 0.00 0.00 39.54 3.27
2727 3201 6.295405 GGCTATCCCTCTTATACTGGAGAAAC 60.295 46.154 0.00 0.00 0.00 2.78
2729 3203 5.334421 GGCTATCCCTCTTATACTGGAGAA 58.666 45.833 0.00 0.00 0.00 2.87
2733 3207 2.166664 GCGGCTATCCCTCTTATACTGG 59.833 54.545 0.00 0.00 0.00 4.00
2734 3208 2.826128 TGCGGCTATCCCTCTTATACTG 59.174 50.000 0.00 0.00 0.00 2.74
2735 3209 2.826725 GTGCGGCTATCCCTCTTATACT 59.173 50.000 0.00 0.00 0.00 2.12
2740 3216 0.978146 ACAGTGCGGCTATCCCTCTT 60.978 55.000 0.00 0.00 0.00 2.85
2812 3288 2.418884 GCAGCCAGTTCCTACTTCCTAC 60.419 54.545 0.00 0.00 30.26 3.18
2813 3289 1.831736 GCAGCCAGTTCCTACTTCCTA 59.168 52.381 0.00 0.00 30.26 2.94
2814 3290 0.615850 GCAGCCAGTTCCTACTTCCT 59.384 55.000 0.00 0.00 30.26 3.36
2815 3291 0.615850 AGCAGCCAGTTCCTACTTCC 59.384 55.000 0.00 0.00 30.26 3.46
2816 3292 2.481289 AAGCAGCCAGTTCCTACTTC 57.519 50.000 0.00 0.00 30.26 3.01
2817 3293 4.576330 AATAAGCAGCCAGTTCCTACTT 57.424 40.909 0.00 0.00 30.26 2.24
2818 3294 4.019321 TCAAATAAGCAGCCAGTTCCTACT 60.019 41.667 0.00 0.00 34.00 2.57
2836 3312 7.864108 TGCTACACTAATGCAGTTATCAAAT 57.136 32.000 0.00 0.00 34.26 2.32
2865 3341 4.271661 TGCATTCCTCTTTCATGCATGTA 58.728 39.130 25.43 14.44 46.53 2.29
2866 3342 3.093814 TGCATTCCTCTTTCATGCATGT 58.906 40.909 25.43 0.46 46.53 3.21
2867 3343 3.793797 TGCATTCCTCTTTCATGCATG 57.206 42.857 21.07 21.07 46.53 4.06
2870 3346 2.756760 TCCTTGCATTCCTCTTTCATGC 59.243 45.455 0.00 0.00 43.13 4.06
2871 3347 4.219070 TGTTCCTTGCATTCCTCTTTCATG 59.781 41.667 0.00 0.00 0.00 3.07
2872 3348 4.410099 TGTTCCTTGCATTCCTCTTTCAT 58.590 39.130 0.00 0.00 0.00 2.57
2873 3349 3.831323 TGTTCCTTGCATTCCTCTTTCA 58.169 40.909 0.00 0.00 0.00 2.69
2874 3350 5.047802 TGAATGTTCCTTGCATTCCTCTTTC 60.048 40.000 13.32 0.00 46.87 2.62
2875 3351 4.834496 TGAATGTTCCTTGCATTCCTCTTT 59.166 37.500 13.32 0.00 46.87 2.52
2876 3352 4.410099 TGAATGTTCCTTGCATTCCTCTT 58.590 39.130 13.32 0.00 46.87 2.85
2877 3353 4.015084 CTGAATGTTCCTTGCATTCCTCT 58.985 43.478 13.32 0.00 46.87 3.69
2878 3354 3.129988 CCTGAATGTTCCTTGCATTCCTC 59.870 47.826 13.32 0.00 46.87 3.71
2879 3355 3.094572 CCTGAATGTTCCTTGCATTCCT 58.905 45.455 13.32 0.00 46.87 3.36
2880 3356 2.827921 ACCTGAATGTTCCTTGCATTCC 59.172 45.455 13.32 0.30 46.87 3.01
2882 3358 3.642848 ACAACCTGAATGTTCCTTGCATT 59.357 39.130 0.00 0.00 39.04 3.56
2883 3359 3.233507 ACAACCTGAATGTTCCTTGCAT 58.766 40.909 0.00 0.00 0.00 3.96
2884 3360 2.665165 ACAACCTGAATGTTCCTTGCA 58.335 42.857 0.00 0.00 0.00 4.08
2885 3361 3.383761 CAACAACCTGAATGTTCCTTGC 58.616 45.455 0.00 0.00 38.90 4.01
2886 3362 3.384467 ACCAACAACCTGAATGTTCCTTG 59.616 43.478 0.00 0.00 38.90 3.61
2887 3363 3.642141 ACCAACAACCTGAATGTTCCTT 58.358 40.909 0.00 0.00 38.90 3.36
2888 3364 3.312736 ACCAACAACCTGAATGTTCCT 57.687 42.857 0.00 0.00 38.90 3.36
2889 3365 4.583073 AGTTACCAACAACCTGAATGTTCC 59.417 41.667 0.00 0.00 38.90 3.62
2890 3366 5.519722 CAGTTACCAACAACCTGAATGTTC 58.480 41.667 0.00 0.00 38.90 3.18
2891 3367 4.202111 GCAGTTACCAACAACCTGAATGTT 60.202 41.667 0.00 0.00 41.50 2.71
2892 3368 3.317993 GCAGTTACCAACAACCTGAATGT 59.682 43.478 0.00 0.00 0.00 2.71
2893 3369 3.569701 AGCAGTTACCAACAACCTGAATG 59.430 43.478 0.00 0.00 0.00 2.67
2894 3370 3.832527 AGCAGTTACCAACAACCTGAAT 58.167 40.909 0.00 0.00 0.00 2.57
2895 3371 3.290948 AGCAGTTACCAACAACCTGAA 57.709 42.857 0.00 0.00 0.00 3.02
2896 3372 3.290948 AAGCAGTTACCAACAACCTGA 57.709 42.857 0.00 0.00 0.00 3.86
2897 3373 4.556699 GCTTAAGCAGTTACCAACAACCTG 60.557 45.833 22.59 0.00 41.59 4.00
2898 3374 3.568430 GCTTAAGCAGTTACCAACAACCT 59.432 43.478 22.59 0.00 41.59 3.50
2899 3375 3.568430 AGCTTAAGCAGTTACCAACAACC 59.432 43.478 28.39 0.00 45.16 3.77
2900 3376 4.830826 AGCTTAAGCAGTTACCAACAAC 57.169 40.909 28.39 0.00 45.16 3.32
2901 3377 4.024387 CGAAGCTTAAGCAGTTACCAACAA 60.024 41.667 28.39 0.00 45.16 2.83
2902 3378 3.496884 CGAAGCTTAAGCAGTTACCAACA 59.503 43.478 28.39 0.00 45.16 3.33
2903 3379 3.120304 CCGAAGCTTAAGCAGTTACCAAC 60.120 47.826 28.39 8.09 45.16 3.77
2904 3380 3.071479 CCGAAGCTTAAGCAGTTACCAA 58.929 45.455 28.39 0.00 45.16 3.67
2905 3381 2.038033 ACCGAAGCTTAAGCAGTTACCA 59.962 45.455 28.39 0.00 45.16 3.25
2906 3382 2.415512 CACCGAAGCTTAAGCAGTTACC 59.584 50.000 28.39 9.79 45.16 2.85
2907 3383 3.323243 TCACCGAAGCTTAAGCAGTTAC 58.677 45.455 28.39 13.18 45.16 2.50
2908 3384 3.585862 CTCACCGAAGCTTAAGCAGTTA 58.414 45.455 28.39 10.93 45.16 2.24
2909 3385 2.417719 CTCACCGAAGCTTAAGCAGTT 58.582 47.619 28.39 15.42 45.16 3.16
2910 3386 1.338200 CCTCACCGAAGCTTAAGCAGT 60.338 52.381 28.39 16.19 45.16 4.40
2911 3387 1.363744 CCTCACCGAAGCTTAAGCAG 58.636 55.000 28.39 18.15 45.16 4.24
2912 3388 0.036388 CCCTCACCGAAGCTTAAGCA 60.036 55.000 28.39 5.75 45.16 3.91
2913 3389 0.249398 TCCCTCACCGAAGCTTAAGC 59.751 55.000 20.09 20.09 42.49 3.09
2914 3390 1.134670 CCTCCCTCACCGAAGCTTAAG 60.135 57.143 0.00 0.00 0.00 1.85
2915 3391 0.902531 CCTCCCTCACCGAAGCTTAA 59.097 55.000 0.00 0.00 0.00 1.85
2916 3392 1.614241 GCCTCCCTCACCGAAGCTTA 61.614 60.000 0.00 0.00 0.00 3.09
2917 3393 2.960688 GCCTCCCTCACCGAAGCTT 61.961 63.158 0.00 0.00 0.00 3.74
2918 3394 3.394836 GCCTCCCTCACCGAAGCT 61.395 66.667 0.00 0.00 0.00 3.74
2919 3395 3.672295 CTGCCTCCCTCACCGAAGC 62.672 68.421 0.00 0.00 0.00 3.86
2920 3396 2.581354 CTGCCTCCCTCACCGAAG 59.419 66.667 0.00 0.00 0.00 3.79
2921 3397 2.798445 TAGCTGCCTCCCTCACCGAA 62.798 60.000 0.00 0.00 0.00 4.30
2922 3398 3.296842 TAGCTGCCTCCCTCACCGA 62.297 63.158 0.00 0.00 0.00 4.69
2923 3399 2.759973 TAGCTGCCTCCCTCACCG 60.760 66.667 0.00 0.00 0.00 4.94
2924 3400 2.439104 CCTAGCTGCCTCCCTCACC 61.439 68.421 0.00 0.00 0.00 4.02
2925 3401 2.439104 CCCTAGCTGCCTCCCTCAC 61.439 68.421 0.00 0.00 0.00 3.51
2926 3402 2.041508 CCCTAGCTGCCTCCCTCA 60.042 66.667 0.00 0.00 0.00 3.86
2927 3403 1.690985 AACCCTAGCTGCCTCCCTC 60.691 63.158 0.00 0.00 0.00 4.30
2928 3404 1.690985 GAACCCTAGCTGCCTCCCT 60.691 63.158 0.00 0.00 0.00 4.20
2929 3405 2.747443 GGAACCCTAGCTGCCTCCC 61.747 68.421 0.00 0.00 0.00 4.30
2930 3406 2.911928 GGAACCCTAGCTGCCTCC 59.088 66.667 0.00 0.00 0.00 4.30
2943 3419 2.367107 GAGGGGAGGAGGGGGAAC 60.367 72.222 0.00 0.00 0.00 3.62
2944 3420 3.707189 GGAGGGGAGGAGGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
2947 3423 4.825679 GTGGGAGGGGAGGAGGGG 62.826 77.778 0.00 0.00 0.00 4.79
2948 3424 4.825679 GGTGGGAGGGGAGGAGGG 62.826 77.778 0.00 0.00 0.00 4.30
2982 3458 3.787001 GAAGGGGACGGAGGCAGG 61.787 72.222 0.00 0.00 0.00 4.85
2983 3459 3.003173 TGAAGGGGACGGAGGCAG 61.003 66.667 0.00 0.00 0.00 4.85
2984 3460 3.003173 CTGAAGGGGACGGAGGCA 61.003 66.667 0.00 0.00 0.00 4.75
2985 3461 4.475135 GCTGAAGGGGACGGAGGC 62.475 72.222 0.00 0.00 0.00 4.70
2986 3462 3.787001 GGCTGAAGGGGACGGAGG 61.787 72.222 0.00 0.00 0.00 4.30
2987 3463 3.787001 GGGCTGAAGGGGACGGAG 61.787 72.222 0.00 0.00 0.00 4.63
2988 3464 4.332543 AGGGCTGAAGGGGACGGA 62.333 66.667 0.00 0.00 0.00 4.69
2989 3465 3.787001 GAGGGCTGAAGGGGACGG 61.787 72.222 0.00 0.00 0.00 4.79
2990 3466 3.787001 GGAGGGCTGAAGGGGACG 61.787 72.222 0.00 0.00 0.00 4.79
2991 3467 3.412408 GGGAGGGCTGAAGGGGAC 61.412 72.222 0.00 0.00 0.00 4.46
2992 3468 4.760220 GGGGAGGGCTGAAGGGGA 62.760 72.222 0.00 0.00 0.00 4.81
2994 3470 4.767892 AGGGGGAGGGCTGAAGGG 62.768 72.222 0.00 0.00 0.00 3.95
2995 3471 2.615288 AAGGGGGAGGGCTGAAGG 60.615 66.667 0.00 0.00 0.00 3.46
2996 3472 2.684499 GGAAGGGGGAGGGCTGAAG 61.684 68.421 0.00 0.00 0.00 3.02
2997 3473 2.614013 GGAAGGGGGAGGGCTGAA 60.614 66.667 0.00 0.00 0.00 3.02
2998 3474 4.760220 GGGAAGGGGGAGGGCTGA 62.760 72.222 0.00 0.00 0.00 4.26
3002 3478 4.371231 ACAGGGGAAGGGGGAGGG 62.371 72.222 0.00 0.00 0.00 4.30
3003 3479 2.692741 GACAGGGGAAGGGGGAGG 60.693 72.222 0.00 0.00 0.00 4.30
3004 3480 2.692741 GGACAGGGGAAGGGGGAG 60.693 72.222 0.00 0.00 0.00 4.30
3005 3481 3.547737 TGGACAGGGGAAGGGGGA 61.548 66.667 0.00 0.00 0.00 4.81
3006 3482 2.865183 ATCTGGACAGGGGAAGGGGG 62.865 65.000 0.00 0.00 0.00 5.40
3007 3483 1.308216 ATCTGGACAGGGGAAGGGG 60.308 63.158 0.00 0.00 0.00 4.79
3008 3484 1.348775 GGATCTGGACAGGGGAAGGG 61.349 65.000 0.00 0.00 0.00 3.95
3009 3485 1.690219 CGGATCTGGACAGGGGAAGG 61.690 65.000 0.00 0.00 0.00 3.46
3010 3486 1.826024 CGGATCTGGACAGGGGAAG 59.174 63.158 0.00 0.00 0.00 3.46
3011 3487 2.367202 GCGGATCTGGACAGGGGAA 61.367 63.158 3.14 0.00 0.00 3.97
3012 3488 2.764128 GCGGATCTGGACAGGGGA 60.764 66.667 3.14 0.00 0.00 4.81
3013 3489 3.866582 GGCGGATCTGGACAGGGG 61.867 72.222 3.14 0.00 0.00 4.79
3014 3490 2.765807 AGGCGGATCTGGACAGGG 60.766 66.667 3.14 0.00 0.00 4.45
3015 3491 2.801631 GGAGGCGGATCTGGACAGG 61.802 68.421 3.14 0.00 0.00 4.00
3016 3492 1.743321 GAGGAGGCGGATCTGGACAG 61.743 65.000 3.14 0.00 0.00 3.51
3017 3493 1.758514 GAGGAGGCGGATCTGGACA 60.759 63.158 3.14 0.00 0.00 4.02
3018 3494 2.851071 CGAGGAGGCGGATCTGGAC 61.851 68.421 3.14 0.00 0.00 4.02
3019 3495 2.519541 CGAGGAGGCGGATCTGGA 60.520 66.667 3.14 0.00 0.00 3.86
3055 3531 1.744741 GCAGGTGAGGAGCTTGAGC 60.745 63.158 0.00 0.00 42.49 4.26
3056 3532 1.447489 CGCAGGTGAGGAGCTTGAG 60.447 63.158 0.00 0.00 0.00 3.02
3057 3533 2.659016 CGCAGGTGAGGAGCTTGA 59.341 61.111 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.