Multiple sequence alignment - TraesCS3A01G331400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G331400 chr3A 100.000 3074 0 0 1 3074 575950002 575946929 0.000000e+00 5677
1 TraesCS3A01G331400 chr3B 91.845 2477 91 50 1 2435 572937906 572935499 0.000000e+00 3352
2 TraesCS3A01G331400 chr3B 89.740 653 37 14 2437 3074 572935450 572934813 0.000000e+00 808
3 TraesCS3A01G331400 chr3D 94.771 2161 58 29 307 2435 437780122 437777985 0.000000e+00 3314
4 TraesCS3A01G331400 chr3D 92.166 651 24 13 2437 3074 437777942 437777306 0.000000e+00 894
5 TraesCS3A01G331400 chr3D 93.860 114 7 0 1 114 437780485 437780372 4.080000e-39 172
6 TraesCS3A01G331400 chr1D 89.674 1075 101 9 997 2069 406973032 406974098 0.000000e+00 1362
7 TraesCS3A01G331400 chr1A 89.581 1075 102 9 997 2069 502677733 502678799 0.000000e+00 1356
8 TraesCS3A01G331400 chr1B 89.904 1040 98 7 1032 2069 547281831 547282865 0.000000e+00 1332
9 TraesCS3A01G331400 chr5A 84.632 937 123 17 1064 1985 308376760 308375830 0.000000e+00 913
10 TraesCS3A01G331400 chr5D 84.249 946 128 17 1055 1985 243219962 243220901 0.000000e+00 902
11 TraesCS3A01G331400 chr5B 84.278 935 128 15 1064 1984 255200455 255199526 0.000000e+00 894


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G331400 chr3A 575946929 575950002 3073 True 5677 5677 100.0000 1 3074 1 chr3A.!!$R1 3073
1 TraesCS3A01G331400 chr3B 572934813 572937906 3093 True 2080 3352 90.7925 1 3074 2 chr3B.!!$R1 3073
2 TraesCS3A01G331400 chr3D 437777306 437780485 3179 True 1460 3314 93.5990 1 3074 3 chr3D.!!$R1 3073
3 TraesCS3A01G331400 chr1D 406973032 406974098 1066 False 1362 1362 89.6740 997 2069 1 chr1D.!!$F1 1072
4 TraesCS3A01G331400 chr1A 502677733 502678799 1066 False 1356 1356 89.5810 997 2069 1 chr1A.!!$F1 1072
5 TraesCS3A01G331400 chr1B 547281831 547282865 1034 False 1332 1332 89.9040 1032 2069 1 chr1B.!!$F1 1037
6 TraesCS3A01G331400 chr5A 308375830 308376760 930 True 913 913 84.6320 1064 1985 1 chr5A.!!$R1 921
7 TraesCS3A01G331400 chr5D 243219962 243220901 939 False 902 902 84.2490 1055 1985 1 chr5D.!!$F1 930
8 TraesCS3A01G331400 chr5B 255199526 255200455 929 True 894 894 84.2780 1064 1984 1 chr5B.!!$R1 920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 89 0.036448 TCGGAGTCGGTGAAGAGAGT 59.964 55.0 0.0 0.0 36.95 3.24 F
82 91 0.109039 GGAGTCGGTGAAGAGAGTGC 60.109 60.0 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 1657 1.577729 AGGAGGATCTGGATGAGGACA 59.422 52.381 0.00 0.0 33.73 4.02 R
2090 2190 1.408969 TGTTGGATCGGATCGGATGA 58.591 50.000 19.43 4.3 0.00 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 85 2.341101 GCCTCGGAGTCGGTGAAGA 61.341 63.158 4.02 0.00 36.95 2.87
77 86 1.803943 CCTCGGAGTCGGTGAAGAG 59.196 63.158 4.02 0.00 36.95 2.85
78 87 0.677098 CCTCGGAGTCGGTGAAGAGA 60.677 60.000 4.02 0.00 36.95 3.10
79 88 0.730265 CTCGGAGTCGGTGAAGAGAG 59.270 60.000 0.00 0.00 36.95 3.20
80 89 0.036448 TCGGAGTCGGTGAAGAGAGT 59.964 55.000 0.00 0.00 36.95 3.24
81 90 0.169230 CGGAGTCGGTGAAGAGAGTG 59.831 60.000 0.00 0.00 0.00 3.51
82 91 0.109039 GGAGTCGGTGAAGAGAGTGC 60.109 60.000 0.00 0.00 0.00 4.40
83 92 0.885196 GAGTCGGTGAAGAGAGTGCT 59.115 55.000 0.00 0.00 0.00 4.40
128 157 2.267324 GCTCTCCTCTGTGCCCAC 59.733 66.667 0.00 0.00 0.00 4.61
130 159 1.979155 CTCTCCTCTGTGCCCACGA 60.979 63.158 0.00 0.00 0.00 4.35
178 207 3.737172 CAACCGCTCCCCGCTTTG 61.737 66.667 0.00 0.00 36.13 2.77
194 223 1.499913 TTTGCCCTGCCCTGATCTGA 61.500 55.000 0.38 0.00 0.00 3.27
198 227 2.503061 CTGCCCTGATCTGACCGG 59.497 66.667 0.00 0.00 0.00 5.28
203 232 0.394565 CCCTGATCTGACCGGAATCC 59.605 60.000 9.46 0.00 0.00 3.01
222 251 1.497991 CCGTTGTCGCTTCTCTTTGA 58.502 50.000 0.00 0.00 35.54 2.69
223 252 1.192534 CCGTTGTCGCTTCTCTTTGAC 59.807 52.381 0.00 0.00 35.54 3.18
266 314 1.136695 GGCAGAGGAGATGAGTGAGTG 59.863 57.143 0.00 0.00 0.00 3.51
275 323 3.439154 AGATGAGTGAGTGGACTGTGAT 58.561 45.455 0.00 0.00 0.00 3.06
305 354 1.735376 GATGAGCTCGTTCGCCCCTA 61.735 60.000 10.42 0.00 0.00 3.53
452 529 2.474410 AAAGGCTCCGTAACTCAAGG 57.526 50.000 0.00 0.00 0.00 3.61
454 531 0.896226 AGGCTCCGTAACTCAAGGAC 59.104 55.000 0.00 0.00 30.85 3.85
456 533 1.275573 GGCTCCGTAACTCAAGGACTT 59.724 52.381 0.00 0.00 30.85 3.01
485 562 3.350219 AATTAGGCACTGGTCGTGATT 57.650 42.857 0.00 0.00 46.81 2.57
487 564 0.391130 TAGGCACTGGTCGTGATTGC 60.391 55.000 0.00 0.00 46.81 3.56
613 693 1.297451 GCTCGTAGACCGCACGTAG 60.297 63.158 0.00 0.00 40.27 3.51
656 736 1.137404 CCATGCGGCCGAAAAAGAG 59.863 57.895 33.48 10.25 0.00 2.85
677 757 3.055719 AAAGCCACATCCGCACCG 61.056 61.111 0.00 0.00 0.00 4.94
825 905 1.178534 CCGTGCCAAGAAACCCACAT 61.179 55.000 0.00 0.00 0.00 3.21
833 913 0.112412 AGAAACCCACATCCACACCC 59.888 55.000 0.00 0.00 0.00 4.61
834 914 0.178975 GAAACCCACATCCACACCCA 60.179 55.000 0.00 0.00 0.00 4.51
836 916 1.650242 AACCCACATCCACACCCACA 61.650 55.000 0.00 0.00 0.00 4.17
837 917 1.603455 CCCACATCCACACCCACAC 60.603 63.158 0.00 0.00 0.00 3.82
865 945 1.359130 CCTCTCCAAAATCCCCCAACT 59.641 52.381 0.00 0.00 0.00 3.16
881 961 0.413832 AACTACCAGCCTCCTCCTCA 59.586 55.000 0.00 0.00 0.00 3.86
882 962 0.413832 ACTACCAGCCTCCTCCTCAA 59.586 55.000 0.00 0.00 0.00 3.02
883 963 1.008938 ACTACCAGCCTCCTCCTCAAT 59.991 52.381 0.00 0.00 0.00 2.57
884 964 2.122768 CTACCAGCCTCCTCCTCAATT 58.877 52.381 0.00 0.00 0.00 2.32
885 965 0.915364 ACCAGCCTCCTCCTCAATTC 59.085 55.000 0.00 0.00 0.00 2.17
889 969 1.207791 GCCTCCTCCTCAATTCCTCA 58.792 55.000 0.00 0.00 0.00 3.86
909 989 3.237741 CTCCTCCCAGATCCGCCC 61.238 72.222 0.00 0.00 0.00 6.13
910 990 4.088351 TCCTCCCAGATCCGCCCA 62.088 66.667 0.00 0.00 0.00 5.36
1251 1342 2.360852 GTCGACCTCCCGTCCTCA 60.361 66.667 3.51 0.00 38.36 3.86
2090 2190 2.284754 TAGAGCCGCTCATCTCATCT 57.715 50.000 22.29 1.58 32.06 2.90
2091 2191 0.961019 AGAGCCGCTCATCTCATCTC 59.039 55.000 22.29 0.00 32.06 2.75
2174 2274 1.341080 AGCAGGTTCCCCAAAATGTG 58.659 50.000 0.00 0.00 0.00 3.21
2175 2275 1.133199 AGCAGGTTCCCCAAAATGTGA 60.133 47.619 0.00 0.00 0.00 3.58
2176 2276 1.901833 GCAGGTTCCCCAAAATGTGAT 59.098 47.619 0.00 0.00 0.00 3.06
2177 2277 2.094026 GCAGGTTCCCCAAAATGTGATC 60.094 50.000 0.00 0.00 0.00 2.92
2178 2278 2.497273 CAGGTTCCCCAAAATGTGATCC 59.503 50.000 0.00 0.00 0.00 3.36
2233 2333 7.271511 TGTTCATTTCTTGCCTTAATTTGTGT 58.728 30.769 0.00 0.00 0.00 3.72
2329 2430 5.125739 AGACAGTGCTACTACCAGTATCAAC 59.874 44.000 0.00 0.00 29.82 3.18
2344 2445 6.472163 CCAGTATCAACAAAATTGTATTCGGC 59.528 38.462 0.00 0.00 41.31 5.54
2366 2476 6.648310 CGGCTGTCTATTGTATCATCATCTTT 59.352 38.462 0.00 0.00 0.00 2.52
2388 2504 4.503910 TGTACTAAGCATTGCATCGAGTT 58.496 39.130 11.91 0.00 0.00 3.01
2480 2643 6.209391 CCTAATTTATGATGGGATGTTGGACC 59.791 42.308 0.00 0.00 0.00 4.46
2590 2755 2.683742 CGCCTTGATTCCATTGGTAGGT 60.684 50.000 1.86 0.00 0.00 3.08
2598 2763 1.707989 TCCATTGGTAGGTGCTTGGAA 59.292 47.619 1.86 0.00 30.62 3.53
2741 2906 2.125832 TGTTACGGCCGCTAGTGC 60.126 61.111 28.58 10.40 0.00 4.40
2773 2939 4.980434 CAGTGTTTTCAATTGCTCAAGAGG 59.020 41.667 0.00 0.00 0.00 3.69
2777 2943 0.700564 TCAATTGCTCAAGAGGGCCT 59.299 50.000 5.25 5.25 0.00 5.19
2876 3046 2.682856 TGTGAATTTAATCCTGCCGAGC 59.317 45.455 0.00 0.00 0.00 5.03
2879 3049 2.717639 ATTTAATCCTGCCGAGCACT 57.282 45.000 0.00 0.00 33.79 4.40
2912 3082 5.236478 CACCGAGTCAAATTTCTTGTACTGT 59.764 40.000 0.00 0.00 0.00 3.55
2953 3123 3.423749 TCAGATTCTTGCATTGCCTTCA 58.576 40.909 6.12 0.00 0.00 3.02
2983 3161 3.472652 ACACTTGCACTACGGAATCAAA 58.527 40.909 0.00 0.00 0.00 2.69
3055 3235 5.625311 CAGATCGGAGCTTTGTGTTTTTAAC 59.375 40.000 0.00 0.00 0.00 2.01
3065 3245 6.402766 GCTTTGTGTTTTTAACCCTTTTCCAC 60.403 38.462 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.952497 ACATGCTCGTGTGCTTCTGG 60.952 55.000 0.00 0.00 0.00 3.86
76 85 2.729479 CCGCCTCCATCAGCACTCT 61.729 63.158 0.00 0.00 0.00 3.24
77 86 2.202987 CCGCCTCCATCAGCACTC 60.203 66.667 0.00 0.00 0.00 3.51
78 87 4.479993 GCCGCCTCCATCAGCACT 62.480 66.667 0.00 0.00 0.00 4.40
81 90 4.925861 GAGGCCGCCTCCATCAGC 62.926 72.222 26.79 2.05 44.36 4.26
128 157 2.811317 GAGCTCCGGTGCAACTCG 60.811 66.667 28.68 0.00 36.74 4.18
130 159 3.241530 TGGAGCTCCGGTGCAACT 61.242 61.111 28.68 9.86 39.43 3.16
177 206 2.285592 TCAGATCAGGGCAGGGCA 60.286 61.111 0.00 0.00 0.00 5.36
178 207 2.191641 GTCAGATCAGGGCAGGGC 59.808 66.667 0.00 0.00 0.00 5.19
182 211 0.982852 ATTCCGGTCAGATCAGGGCA 60.983 55.000 0.00 0.00 0.00 5.36
198 227 1.000145 GAGAAGCGACAACGGGATTC 59.000 55.000 0.00 0.00 40.15 2.52
203 232 1.192534 GTCAAAGAGAAGCGACAACGG 59.807 52.381 0.00 0.00 40.15 4.44
206 235 2.866156 CACAGTCAAAGAGAAGCGACAA 59.134 45.455 0.00 0.00 0.00 3.18
209 238 2.100749 TCACACAGTCAAAGAGAAGCGA 59.899 45.455 0.00 0.00 0.00 4.93
213 242 3.390967 TCCCATCACACAGTCAAAGAGAA 59.609 43.478 0.00 0.00 0.00 2.87
222 251 5.139727 TCATTTCTTTTCCCATCACACAGT 58.860 37.500 0.00 0.00 0.00 3.55
223 252 5.336213 CCTCATTTCTTTTCCCATCACACAG 60.336 44.000 0.00 0.00 0.00 3.66
266 314 3.955471 TCTCCATTTTCCATCACAGTCC 58.045 45.455 0.00 0.00 0.00 3.85
275 323 2.237143 ACGAGCTCATCTCCATTTTCCA 59.763 45.455 15.40 0.00 38.62 3.53
305 354 2.364324 TCTACTGTTGCCACGTCTTCTT 59.636 45.455 0.00 0.00 0.00 2.52
330 398 0.036952 CTGGTTGCACGGATCTCAGT 60.037 55.000 0.00 0.00 0.00 3.41
332 400 0.904649 ATCTGGTTGCACGGATCTCA 59.095 50.000 0.00 0.00 30.80 3.27
395 463 4.042311 TGGGAAATGTTAACTAGCTGACCA 59.958 41.667 7.22 4.36 0.00 4.02
427 495 4.901868 TGAGTTACGGAGCCTTTTTACAT 58.098 39.130 0.00 0.00 0.00 2.29
452 529 4.691216 AGTGCCTAATTTTCTCGACAAGTC 59.309 41.667 0.00 0.00 0.00 3.01
454 531 4.142816 CCAGTGCCTAATTTTCTCGACAAG 60.143 45.833 0.00 0.00 0.00 3.16
456 533 3.244422 ACCAGTGCCTAATTTTCTCGACA 60.244 43.478 0.00 0.00 0.00 4.35
485 562 2.040278 AGTGCCTAATCCTTCACTTGCA 59.960 45.455 0.00 0.00 36.48 4.08
487 564 3.012518 CCAGTGCCTAATCCTTCACTTG 58.987 50.000 0.00 0.00 37.66 3.16
618 698 3.788766 CGCTTCGTTTCGGGCTGG 61.789 66.667 0.00 0.00 0.00 4.85
621 701 4.148645 GCTCGCTTCGTTTCGGGC 62.149 66.667 2.65 2.65 45.24 6.13
623 703 2.100631 ATGGCTCGCTTCGTTTCGG 61.101 57.895 0.00 0.00 0.00 4.30
656 736 1.971167 TGCGGATGTGGCTTTGACC 60.971 57.895 0.00 0.00 0.00 4.02
677 757 0.736636 GGCGTGTTTTATAGGGGTGC 59.263 55.000 0.00 0.00 0.00 5.01
678 758 1.741145 GTGGCGTGTTTTATAGGGGTG 59.259 52.381 0.00 0.00 0.00 4.61
679 759 1.351683 TGTGGCGTGTTTTATAGGGGT 59.648 47.619 0.00 0.00 0.00 4.95
680 760 1.741145 GTGTGGCGTGTTTTATAGGGG 59.259 52.381 0.00 0.00 0.00 4.79
707 787 2.367202 GGAGAATGGGGTGCTCCGA 61.367 63.158 0.00 0.00 38.88 4.55
825 905 3.552384 GACGGGTGTGGGTGTGGA 61.552 66.667 0.00 0.00 0.00 4.02
833 913 2.352032 GGAGAGGAGGACGGGTGTG 61.352 68.421 0.00 0.00 0.00 3.82
834 914 2.037527 GGAGAGGAGGACGGGTGT 59.962 66.667 0.00 0.00 0.00 4.16
836 916 0.473117 TTTTGGAGAGGAGGACGGGT 60.473 55.000 0.00 0.00 0.00 5.28
837 917 0.912486 ATTTTGGAGAGGAGGACGGG 59.088 55.000 0.00 0.00 0.00 5.28
865 945 2.119495 GAATTGAGGAGGAGGCTGGTA 58.881 52.381 0.00 0.00 0.00 3.25
881 961 2.021639 TCTGGGAGGAGGATGAGGAATT 60.022 50.000 0.00 0.00 0.00 2.17
882 962 1.582624 TCTGGGAGGAGGATGAGGAAT 59.417 52.381 0.00 0.00 0.00 3.01
883 963 1.018840 TCTGGGAGGAGGATGAGGAA 58.981 55.000 0.00 0.00 0.00 3.36
884 964 1.148867 GATCTGGGAGGAGGATGAGGA 59.851 57.143 0.00 0.00 0.00 3.71
885 965 1.643310 GATCTGGGAGGAGGATGAGG 58.357 60.000 0.00 0.00 0.00 3.86
889 969 1.535202 GCGGATCTGGGAGGAGGAT 60.535 63.158 3.14 0.00 0.00 3.24
1566 1657 1.577729 AGGAGGATCTGGATGAGGACA 59.422 52.381 0.00 0.00 33.73 4.02
2090 2190 1.408969 TGTTGGATCGGATCGGATGA 58.591 50.000 19.43 4.30 0.00 2.92
2091 2191 1.867233 GTTGTTGGATCGGATCGGATG 59.133 52.381 19.43 0.00 0.00 3.51
2174 2274 5.991606 TCATCAAACATGTAAGGATCGGATC 59.008 40.000 9.54 9.54 0.00 3.36
2175 2275 5.928976 TCATCAAACATGTAAGGATCGGAT 58.071 37.500 0.00 0.00 0.00 4.18
2176 2276 5.351948 TCATCAAACATGTAAGGATCGGA 57.648 39.130 0.00 0.00 0.00 4.55
2177 2277 5.561532 GCATCATCAAACATGTAAGGATCGG 60.562 44.000 0.00 0.00 0.00 4.18
2178 2278 5.007921 TGCATCATCAAACATGTAAGGATCG 59.992 40.000 0.00 0.00 0.00 3.69
2233 2333 8.745590 GTTTCCTGTATTTATTTGCCTTCCTAA 58.254 33.333 0.00 0.00 0.00 2.69
2329 2430 7.250569 ACAATAGACAGCCGAATACAATTTTG 58.749 34.615 0.00 0.00 0.00 2.44
2366 2476 4.123497 ACTCGATGCAATGCTTAGTACA 57.877 40.909 6.82 0.00 0.00 2.90
2371 2481 5.356751 ACCAATTAACTCGATGCAATGCTTA 59.643 36.000 6.82 0.00 0.00 3.09
2388 2504 3.431626 CCACATCTCTACGGCACCAATTA 60.432 47.826 0.00 0.00 0.00 1.40
2431 2547 4.974888 CGCGAGGAGGAGTAAATAAGTTAC 59.025 45.833 0.00 0.00 42.22 2.50
2435 2551 2.395654 GCGCGAGGAGGAGTAAATAAG 58.604 52.381 12.10 0.00 0.00 1.73
2480 2643 2.111878 GATGGCACCAGATCCCGG 59.888 66.667 0.00 0.00 0.00 5.73
2576 2741 2.311542 TCCAAGCACCTACCAATGGAAT 59.688 45.455 6.16 0.00 34.21 3.01
2590 2755 1.808411 GATTCGTCTGGTTCCAAGCA 58.192 50.000 0.00 0.00 34.85 3.91
2598 2763 7.605410 AATTTAATTACACGATTCGTCTGGT 57.395 32.000 9.11 7.29 38.32 4.00
2655 2820 5.710513 TGCTCTGCACAGTAATCAATTTT 57.289 34.783 0.00 0.00 31.71 1.82
2656 2821 5.651139 AGATGCTCTGCACAGTAATCAATTT 59.349 36.000 8.65 0.00 43.04 1.82
2657 2822 5.066117 CAGATGCTCTGCACAGTAATCAATT 59.934 40.000 8.65 0.00 43.04 2.32
2658 2823 4.575236 CAGATGCTCTGCACAGTAATCAAT 59.425 41.667 8.65 0.00 43.04 2.57
2684 2849 0.761802 GCAGGTAGATCTGGGGGAAG 59.238 60.000 5.18 0.00 35.43 3.46
2685 2850 0.343372 AGCAGGTAGATCTGGGGGAA 59.657 55.000 5.18 0.00 35.43 3.97
2686 2851 0.399091 CAGCAGGTAGATCTGGGGGA 60.399 60.000 5.18 0.00 35.43 4.81
2687 2852 1.414061 CCAGCAGGTAGATCTGGGGG 61.414 65.000 5.18 0.00 42.70 5.40
2688 2853 0.399091 TCCAGCAGGTAGATCTGGGG 60.399 60.000 5.18 0.00 45.58 4.96
2741 2906 5.220643 GCAATTGAAAACACTGGAAAACTGG 60.221 40.000 10.34 0.00 0.00 4.00
2773 2939 4.754114 CACTTAATTAGCAGATCTCAGGCC 59.246 45.833 0.00 0.00 0.00 5.19
2777 2943 7.561722 AGTCCTACACTTAATTAGCAGATCTCA 59.438 37.037 0.00 0.00 26.56 3.27
2876 3046 2.669229 TCGGTGCACATGCCAGTG 60.669 61.111 20.43 1.56 42.37 3.66
2879 3049 2.358615 GACTCGGTGCACATGCCA 60.359 61.111 20.43 0.00 41.18 4.92
2912 3082 1.075542 GACATTGAACGATGCACCGA 58.924 50.000 7.92 0.00 0.00 4.69
2953 3123 2.186826 GTGCAAGTGTCGGCAGGTT 61.187 57.895 0.00 0.00 41.35 3.50
2996 3174 1.591863 GACGCCCGAATAGACCTGC 60.592 63.158 0.00 0.00 0.00 4.85
2999 3177 5.048852 GGATATATAGACGCCCGAATAGACC 60.049 48.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.